Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012595
(1020 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537523.2| PREDICTED: similar to Activator of 90 kDa heat ... 554 e-158
Alignment gi|XP_868259.1| PREDICTED: similar to Activator of 90 kDa heat ... 543 e-155
Alignment gi|XP_868283.1| PREDICTED: similar to Activator of 90 kDa heat ... 541 e-154
Alignment gi|XP_868290.1| PREDICTED: similar to Activator of 90 kDa heat ... 515 e-146
Alignment gi|XP_868279.1| PREDICTED: similar to Activator of 90 kDa heat ... 321 8e-88
Alignment gi|XP_868274.1| PREDICTED: similar to Activator of 90 kDa heat ... 320 2e-87
Alignment gi|XP_868270.1| PREDICTED: similar to Activator of 90 kDa heat ... 278 5e-75
Alignment gi|XP_868266.1| PREDICTED: similar to Activator of 90 kDa heat ... 250 2e-66
>ref|XP_537523.2| PREDICTED: similar to Activator of 90 kDa heat shock protein ATPase
homolog 1 (AHA1) (p38) isoform 1 [Canis familiaris].
Length = 338
Score = 554 bits (1428), Expect = e-158
Identities = 272/278 (97%), Positives = 276/278 (99%)
Frame = +3
Query: 177 MAKWGEGDPRWIVEERADATNVNNWHWTERDASNWSTDKLKTLFLAVRVQNEEGKCEVTE 356
MAKWGEGDPRWIVEERADATNVNNWHWTERDASNWSTDKLKTLFLAV+VQNEEGKCEVTE
Sbjct: 1 MAKWGEGDPRWIVEERADATNVNNWHWTERDASNWSTDKLKTLFLAVQVQNEEGKCEVTE 60
Query: 357 VNKLDGEASINNRKGKLIFFYEWSIKLNWTGTSKSGVQYKGHVDIPNLSDENSVDEVEIS 536
VNKLDGEASINNRKGKLIFFYEWSIKLNWTGTSKSGVQYKGHV+IPNLSDENSVDEVEIS
Sbjct: 61 VNKLDGEASINNRKGKLIFFYEWSIKLNWTGTSKSGVQYKGHVEIPNLSDENSVDEVEIS 120
Query: 537 VSLAKDEPDTNLVALMKEEGVRLLREAMGIYISTLKTEFTQGMILPTMNGESVDPAGQPA 716
VSLAKDEPDTNLVALMKEEGV+LLREAMGIYISTLKTEFTQGMILPTMNGESVDPAGQPA
Sbjct: 121 VSLAKDEPDTNLVALMKEEGVKLLREAMGIYISTLKTEFTQGMILPTMNGESVDPAGQPA 180
Query: 717 LKTEERKAKSAPSKTQARPVGVKIPTCKITLRETFLTSPEELYRVFTNQELVQAFTHAPA 896
LKTEERKAKSAPSKTQARPVGVKIPTCKITLRETFLTSPEELYRVFT QELVQAFTHAPA
Sbjct: 181 LKTEERKAKSAPSKTQARPVGVKIPTCKITLRETFLTSPEELYRVFTTQELVQAFTHAPA 240
Query: 897 MLEADKGGKFHLVDGNVSGEFTDLVPEKHIVMKWRFKS 1010
MLEAD+GGKFHLVDGNVSGEFTDLVPEK IVMKWRFKS
Sbjct: 241 MLEADRGGKFHLVDGNVSGEFTDLVPEKLIVMKWRFKS 278
>ref|XP_868259.1| PREDICTED: similar to Activator of 90 kDa heat shock protein ATPase
homolog 1 (AHA1) (p38) isoform 2 [Canis familiaris].
Length = 338
Score = 543 bits (1400), Expect = e-155
Identities = 267/278 (96%), Positives = 272/278 (97%)
Frame = +3
Query: 177 MAKWGEGDPRWIVEERADATNVNNWHWTERDASNWSTDKLKTLFLAVRVQNEEGKCEVTE 356
MAKWGEGDPRWIVEERADATNVNNWHWTERDASNWSTDKLKTLFLAV+VQNEEGKCEVTE
Sbjct: 1 MAKWGEGDPRWIVEERADATNVNNWHWTERDASNWSTDKLKTLFLAVQVQNEEGKCEVTE 60
Query: 357 VNKLDGEASINNRKGKLIFFYEWSIKLNWTGTSKSGVQYKGHVDIPNLSDENSVDEVEIS 536
VNKLDGEASINNRKGKLIFFYEWSIKLNWTG S +QYKGHV+IPNLSDENSVDEVEIS
Sbjct: 61 VNKLDGEASINNRKGKLIFFYEWSIKLNWTGKSMLDLQYKGHVEIPNLSDENSVDEVEIS 120
Query: 537 VSLAKDEPDTNLVALMKEEGVRLLREAMGIYISTLKTEFTQGMILPTMNGESVDPAGQPA 716
VSLAKDEPDTNLVALMKEEGV+LLREAMGIYISTLKTEFTQGMILPTMNGESVDPAGQPA
Sbjct: 121 VSLAKDEPDTNLVALMKEEGVKLLREAMGIYISTLKTEFTQGMILPTMNGESVDPAGQPA 180
Query: 717 LKTEERKAKSAPSKTQARPVGVKIPTCKITLRETFLTSPEELYRVFTNQELVQAFTHAPA 896
LKTEERKAKSAPSKTQARPVGVKIPTCKITLRETFLTSPEELYRVFT QELVQAFTHAPA
Sbjct: 181 LKTEERKAKSAPSKTQARPVGVKIPTCKITLRETFLTSPEELYRVFTTQELVQAFTHAPA 240
Query: 897 MLEADKGGKFHLVDGNVSGEFTDLVPEKHIVMKWRFKS 1010
MLEAD+GGKFHLVDGNVSGEFTDLVPEK IVMKWRFKS
Sbjct: 241 MLEADRGGKFHLVDGNVSGEFTDLVPEKLIVMKWRFKS 278
>ref|XP_868283.1| PREDICTED: similar to Activator of 90 kDa heat shock protein ATPase
homolog 1 (AHA1) (p38) isoform 7 [Canis familiaris].
Length = 354
Score = 541 bits (1394), Expect = e-154
Identities = 270/294 (91%), Positives = 275/294 (93%), Gaps = 16/294 (5%)
Frame = +3
Query: 177 MAKWGEGDPRWIVEERADATNVNNWHWTERDASNWSTDKLKTLFLAVRVQNEEGKCEVTE 356
MAKWGEGDPRWIVEERADATNVNNWHWTERDASNWSTDKLKTLFLAV+VQNEEGKCEVTE
Sbjct: 1 MAKWGEGDPRWIVEERADATNVNNWHWTERDASNWSTDKLKTLFLAVQVQNEEGKCEVTE 60
Query: 357 VNKLDGEASINNRKGKLIFFYEWSIKLNWTGTSKSGVQYKGHVDIPNLSDENSVDEVE-- 530
VNKLDGEASINNRKGKLIFFYEWSIKLNWTGTSKSGVQYKGHV+IPNLSDENSVDEVE
Sbjct: 61 VNKLDGEASINNRKGKLIFFYEWSIKLNWTGTSKSGVQYKGHVEIPNLSDENSVDEVEAG 120
Query: 531 --------------ISVSLAKDEPDTNLVALMKEEGVRLLREAMGIYISTLKTEFTQGMI 668
+ VSLAKDEPDTNLVALMKEEGV+LLREAMGIYISTLKTEFTQGMI
Sbjct: 121 SNHSEPHSADNLLGLCVSLAKDEPDTNLVALMKEEGVKLLREAMGIYISTLKTEFTQGMI 180
Query: 669 LPTMNGESVDPAGQPALKTEERKAKSAPSKTQARPVGVKIPTCKITLRETFLTSPEELYR 848
LPTMNGESVDPAGQPALKTEERKAKSAPSKTQARPVGVKIPTCKITLRETFLTSPEELYR
Sbjct: 181 LPTMNGESVDPAGQPALKTEERKAKSAPSKTQARPVGVKIPTCKITLRETFLTSPEELYR 240
Query: 849 VFTNQELVQAFTHAPAMLEADKGGKFHLVDGNVSGEFTDLVPEKHIVMKWRFKS 1010
VFT QELVQAFTHAPAMLEAD+GGKFHLVDGNVSGEFTDLVPEK IVMKWRFKS
Sbjct: 241 VFTTQELVQAFTHAPAMLEADRGGKFHLVDGNVSGEFTDLVPEKLIVMKWRFKS 294
>ref|XP_868290.1| PREDICTED: similar to Activator of 90 kDa heat shock protein ATPase
homolog 1 (AHA1) (p38) isoform 8 [Canis familiaris].
Length = 336
Score = 515 bits (1327), Expect = e-146
Identities = 257/278 (92%), Positives = 262/278 (94%)
Frame = +3
Query: 177 MAKWGEGDPRWIVEERADATNVNNWHWTERDASNWSTDKLKTLFLAVRVQNEEGKCEVTE 356
MAKWGEGDPRWIVEERADATNVNNWHWTERDASNWSTDKLKTLFLAV+VQNEEGKCEVTE
Sbjct: 1 MAKWGEGDPRWIVEERADATNVNNWHWTERDASNWSTDKLKTLFLAVQVQNEEGKCEVTE 60
Query: 357 VNKLDGEASINNRKGKLIFFYEWSIKLNWTGTSKSGVQYKGHVDIPNLSDENSVDEVEIS 536
VNKLDGEASINNRKGKLIFFYEWSIKLNWTGTSKSGVQYKGHV+IPNLSDENSVDEVEIS
Sbjct: 61 VNKLDGEASINNRKGKLIFFYEWSIKLNWTGTSKSGVQYKGHVEIPNLSDENSVDEVEIS 120
Query: 537 VSLAKDEPDTNLVALMKEEGVRLLREAMGIYISTLKTEFTQGMILPTMNGESVDPAGQPA 716
VSLAKDEPDTNLVALMKEEGV+LLREAMGIYISTLKTEFTQGMILPTMNGE P
Sbjct: 121 VSLAKDEPDTNLVALMKEEGVKLLREAMGIYISTLKTEFTQGMILPTMNGEF--PHHSKP 178
Query: 717 LKTEERKAKSAPSKTQARPVGVKIPTCKITLRETFLTSPEELYRVFTNQELVQAFTHAPA 896
+AKSAPSKTQARPVGVKIPTCKITLRETFLTSPEELYRVFT QELVQAFTHAPA
Sbjct: 179 FSLPLPQAKSAPSKTQARPVGVKIPTCKITLRETFLTSPEELYRVFTTQELVQAFTHAPA 238
Query: 897 MLEADKGGKFHLVDGNVSGEFTDLVPEKHIVMKWRFKS 1010
MLEAD+GGKFHLVDGNVSGEFTDLVPEK IVMKWRFKS
Sbjct: 239 MLEADRGGKFHLVDGNVSGEFTDLVPEKLIVMKWRFKS 276
>ref|XP_868279.1| PREDICTED: similar to Activator of 90 kDa heat shock protein ATPase
homolog 1 (AHA1) (p38) isoform 6 [Canis familiaris].
Length = 214
Score = 321 bits (822), Expect = 8e-88
Identities = 162/192 (84%), Positives = 172/192 (89%), Gaps = 5/192 (2%)
Frame = +3
Query: 177 MAKWGEGDPRWIVEERADATNVNNWHWTERDASNWSTDKLKTLFLAVRVQNEEGKCEVTE 356
MAKWGEGDPRWIVEERADATNVNNWHWTERDASNWSTDKLKTLFLAV+VQNEEGKCEVTE
Sbjct: 1 MAKWGEGDPRWIVEERADATNVNNWHWTERDASNWSTDKLKTLFLAVQVQNEEGKCEVTE 60
Query: 357 VNKLDGEASINNRKGKLIFFYEWSIKLNWTGTSKSGVQYKGHVDIPNLSDENSVDEVEIS 536
VNKLDGEASINNRKGKLIFFYEWSIKLNWTGTSKSGVQYKGHV+IPNLSDENSVDEVEIS
Sbjct: 61 VNKLDGEASINNRKGKLIFFYEWSIKLNWTGTSKSGVQYKGHVEIPNLSDENSVDEVEIS 120
Query: 537 VSLAKDEPDTNLVALMKEEGVRLLREAMGIYISTLKTEFTQGMILPTM--NGES---VDP 701
VSLAKDEPDTNLVALMKEEGV+LLREAMGIYISTLKT + L + NGE+ ++
Sbjct: 121 VSLAKDEPDTNLVALMKEEGVKLLREAMGIYISTLKTGHFATITLTFLDKNGETELCMEG 180
Query: 702 AGQPALKTEERK 737
G PA + E +
Sbjct: 181 RGIPAPEEERTR 192
>ref|XP_868274.1| PREDICTED: similar to Activator of 90 kDa heat shock protein ATPase
homolog 1 (AHA1) (p38) isoform 5 [Canis familiaris].
Length = 160
Score = 320 bits (819), Expect = 2e-87
Identities = 154/157 (98%), Positives = 157/157 (100%)
Frame = +3
Query: 177 MAKWGEGDPRWIVEERADATNVNNWHWTERDASNWSTDKLKTLFLAVRVQNEEGKCEVTE 356
MAKWGEGDPRWIVEERADATNVNNWHWTERDASNWSTDKLKTLFLAV+VQNEEGKCEVTE
Sbjct: 1 MAKWGEGDPRWIVEERADATNVNNWHWTERDASNWSTDKLKTLFLAVQVQNEEGKCEVTE 60
Query: 357 VNKLDGEASINNRKGKLIFFYEWSIKLNWTGTSKSGVQYKGHVDIPNLSDENSVDEVEIS 536
VNKLDGEASINNRKGKLIFFYEWSIKLNWTGTSKSGVQYKGHV+IPNLSDENSVDEVEIS
Sbjct: 61 VNKLDGEASINNRKGKLIFFYEWSIKLNWTGTSKSGVQYKGHVEIPNLSDENSVDEVEIS 120
Query: 537 VSLAKDEPDTNLVALMKEEGVRLLREAMGIYISTLKT 647
VSLAKDEPDTNLVALMKEEGV+LLREAMGIYISTLKT
Sbjct: 121 VSLAKDEPDTNLVALMKEEGVKLLREAMGIYISTLKT 157
>ref|XP_868270.1| PREDICTED: similar to Activator of 90 kDa heat shock protein ATPase
homolog 1 (AHA1) (p38) isoform 4 [Canis familiaris].
Length = 203
Score = 278 bits (712), Expect = 5e-75
Identities = 139/143 (97%), Positives = 141/143 (98%)
Frame = +3
Query: 582 MKEEGVRLLREAMGIYISTLKTEFTQGMILPTMNGESVDPAGQPALKTEERKAKSAPSKT 761
MKEEGV+LLREAMGIYISTLKTEFTQGMILPTMNGESVDPAGQPALKTEERKAKSAPSKT
Sbjct: 1 MKEEGVKLLREAMGIYISTLKTEFTQGMILPTMNGESVDPAGQPALKTEERKAKSAPSKT 60
Query: 762 QARPVGVKIPTCKITLRETFLTSPEELYRVFTNQELVQAFTHAPAMLEADKGGKFHLVDG 941
QARPVGVKIPTCKITLRETFLTSPEELYRVFT QELVQAFTHAPAMLEAD+GGKFHLVDG
Sbjct: 61 QARPVGVKIPTCKITLRETFLTSPEELYRVFTTQELVQAFTHAPAMLEADRGGKFHLVDG 120
Query: 942 NVSGEFTDLVPEKHIVMKWRFKS 1010
NVSGEFTDLVPEK IVMKWRFKS
Sbjct: 121 NVSGEFTDLVPEKLIVMKWRFKS 143
>ref|XP_868266.1| PREDICTED: similar to Activator of 90 kDa heat shock protein ATPase
homolog 1 (AHA1) (p38) isoform 3 [Canis familiaris].
Length = 123
Score = 250 bits (638), Expect = 2e-66
Identities = 117/120 (97%), Positives = 119/120 (99%)
Frame = +3
Query: 177 MAKWGEGDPRWIVEERADATNVNNWHWTERDASNWSTDKLKTLFLAVRVQNEEGKCEVTE 356
MAKWGEGDPRWIVEERADATNVNNWHWTERDASNWSTDKLKTLFLAV+VQNEEGKCEVTE
Sbjct: 1 MAKWGEGDPRWIVEERADATNVNNWHWTERDASNWSTDKLKTLFLAVQVQNEEGKCEVTE 60
Query: 357 VNKLDGEASINNRKGKLIFFYEWSIKLNWTGTSKSGVQYKGHVDIPNLSDENSVDEVEIS 536
VNKLDGEASINNRKGKLIFFYEWSIKLNWTGTSKSGVQYKGHV+IPNLSDENSVDEVE S
Sbjct: 61 VNKLDGEASINNRKGKLIFFYEWSIKLNWTGTSKSGVQYKGHVEIPNLSDENSVDEVESS 120
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,005,735
Number of extensions: 952082
Number of successful extensions: 2988
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 2982
Number of HSP's successfully gapped: 8
Length of query: 340
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 237
Effective length of database: 15,440,896
Effective search space: 3659492352
Effective search space used: 3659492352
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012595
(1020 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029838.1| activator of 90 kDa heat shock protein ATPas... 551 e-157
Alignment gi|NP_001095604.1| activator of 90 kDa heat shock protein ATPas... 265 5e-71
>ref|NP_001029838.1| activator of 90 kDa heat shock protein ATPase homolog 1 [Bos taurus].
Length = 338
Score = 551 bits (1420), Expect = e-157
Identities = 269/278 (96%), Positives = 275/278 (98%)
Frame = +3
Query: 177 MAKWGEGDPRWIVEERADATNVNNWHWTERDASNWSTDKLKTLFLAVRVQNEEGKCEVTE 356
MAKWGEGDPRWIVEERADATNVNNWHWTERDASNWSTDKLKTLFLAVRVQNEEGKCEVTE
Sbjct: 1 MAKWGEGDPRWIVEERADATNVNNWHWTERDASNWSTDKLKTLFLAVRVQNEEGKCEVTE 60
Query: 357 VNKLDGEASINNRKGKLIFFYEWSIKLNWTGTSKSGVQYKGHVDIPNLSDENSVDEVEIS 536
V+KLDGEASINNRKGKLIFFYEWS+KLNWTGTSKSGVQYKGHV+IPNLSDENSVDEVEIS
Sbjct: 61 VSKLDGEASINNRKGKLIFFYEWSVKLNWTGTSKSGVQYKGHVEIPNLSDENSVDEVEIS 120
Query: 537 VSLAKDEPDTNLVALMKEEGVRLLREAMGIYISTLKTEFTQGMILPTMNGESVDPAGQPA 716
VSLAKDEPDTNLVALMKEEGV+LLREAMGIYISTLKTEFTQGMILPTMNGESVDPAG PA
Sbjct: 121 VSLAKDEPDTNLVALMKEEGVKLLREAMGIYISTLKTEFTQGMILPTMNGESVDPAGPPA 180
Query: 717 LKTEERKAKSAPSKTQARPVGVKIPTCKITLRETFLTSPEELYRVFTNQELVQAFTHAPA 896
LKTEERKAKSAPSKTQARPVGVKIPTCKITLRE+FLTSPEELYRVFT QELVQAFTHAPA
Sbjct: 181 LKTEERKAKSAPSKTQARPVGVKIPTCKITLRESFLTSPEELYRVFTTQELVQAFTHAPA 240
Query: 897 MLEADKGGKFHLVDGNVSGEFTDLVPEKHIVMKWRFKS 1010
MLEADKGGKFHLVDGNVSGEFTDLVPEK+I MKWRFKS
Sbjct: 241 MLEADKGGKFHLVDGNVSGEFTDLVPEKYIAMKWRFKS 278
>ref|NP_001095604.1| activator of 90 kDa heat shock protein ATPase homolog 2 [Bos
taurus].
Length = 260
Score = 265 bits (677), Expect = 5e-71
Identities = 134/257 (52%), Positives = 182/257 (70%), Gaps = 4/257 (1%)
Frame = +3
Query: 177 MAKWGEGDPRWIVEERADATNVNNWHWTERDASNWSTDKLKTLFLAVRVQNEEGKCEVTE 356
MAKWG+GDPRWIVEER D TNVNNWHWTERDA++WS +L+ L + + V+NE G+CE++E
Sbjct: 1 MAKWGQGDPRWIVEEREDGTNVNNWHWTERDATSWSKGRLRELLVGITVENEAGRCEISE 60
Query: 357 VNKLDGEASINNRKGKLIFFYEWSIKLNWTG-TSKSGVQYKGHVDIPNLSDENSVDEVEI 533
+ +++GEAS ++RKGKLIFFYEW+IKL W G +SG ++KG ++IP+LS+EN VD+ E+
Sbjct: 61 LKQVEGEASCSSRKGKLIFFYEWNIKLGWKGIIRESGAKHKGLIEIPSLSEENEVDDTEV 120
Query: 534 SVSLAKDEPDTNLVALMKEEGVRLLREAMGIYISTLKTEFTQGMILPTMNGESVDPAGQP 713
+VS K + D L LMK G +REA+G Y+ LKTEFT GMILPT A
Sbjct: 121 NVSKKKGDGDI-LKDLMKTAGTAKVREALGDYLKALKTEFTMGMILPT-------KAMAA 172
Query: 714 ALKTEERKAKSAPSKTQAR---PVGVKIPTCKITLRETFLTSPEELYRVFTNQELVQAFT 884
T ERK + QA +GV+IPT + + E F T+ E+LYR+FT ++LVQ F+
Sbjct: 173 QELTVERKLSENALQIQASSRVALGVRIPTVALHMTELFDTAIEQLYRIFTVKDLVQKFS 232
Query: 885 HAPAMLEADKGGKFHLV 935
+PA+LEA+KGGKF ++
Sbjct: 233 KSPAVLEAEKGGKFQML 249
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,393,917
Number of extensions: 923389
Number of successful extensions: 2986
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2976
Number of HSP's successfully gapped: 2
Length of query: 340
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 237
Effective length of database: 14,273,310
Effective search space: 3382774470
Effective search space used: 3382774470
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012595
(1020 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928925.1| PREDICTED: activator of 90 kDa heat shock pr... 566 e-162
Alignment gi|XP_003356805.1| PREDICTED: activator of 90 kDa heat shock pr... 566 e-162
Alignment gi|XP_003125150.2| PREDICTED: activator of 90 kDa heat shock pr... 260 7e-70
>ref|XP_001928925.1| PREDICTED: activator of 90 kDa heat shock protein ATPase homolog 1
[Sus scrofa].
Length = 338
Score = 566 bits (1459), Expect = e-162
Identities = 278/278 (100%), Positives = 278/278 (100%)
Frame = +3
Query: 177 MAKWGEGDPRWIVEERADATNVNNWHWTERDASNWSTDKLKTLFLAVRVQNEEGKCEVTE 356
MAKWGEGDPRWIVEERADATNVNNWHWTERDASNWSTDKLKTLFLAVRVQNEEGKCEVTE
Sbjct: 1 MAKWGEGDPRWIVEERADATNVNNWHWTERDASNWSTDKLKTLFLAVRVQNEEGKCEVTE 60
Query: 357 VNKLDGEASINNRKGKLIFFYEWSIKLNWTGTSKSGVQYKGHVDIPNLSDENSVDEVEIS 536
VNKLDGEASINNRKGKLIFFYEWSIKLNWTGTSKSGVQYKGHVDIPNLSDENSVDEVEIS
Sbjct: 61 VNKLDGEASINNRKGKLIFFYEWSIKLNWTGTSKSGVQYKGHVDIPNLSDENSVDEVEIS 120
Query: 537 VSLAKDEPDTNLVALMKEEGVRLLREAMGIYISTLKTEFTQGMILPTMNGESVDPAGQPA 716
VSLAKDEPDTNLVALMKEEGVRLLREAMGIYISTLKTEFTQGMILPTMNGESVDPAGQPA
Sbjct: 121 VSLAKDEPDTNLVALMKEEGVRLLREAMGIYISTLKTEFTQGMILPTMNGESVDPAGQPA 180
Query: 717 LKTEERKAKSAPSKTQARPVGVKIPTCKITLRETFLTSPEELYRVFTNQELVQAFTHAPA 896
LKTEERKAKSAPSKTQARPVGVKIPTCKITLRETFLTSPEELYRVFTNQELVQAFTHAPA
Sbjct: 181 LKTEERKAKSAPSKTQARPVGVKIPTCKITLRETFLTSPEELYRVFTNQELVQAFTHAPA 240
Query: 897 MLEADKGGKFHLVDGNVSGEFTDLVPEKHIVMKWRFKS 1010
MLEADKGGKFHLVDGNVSGEFTDLVPEKHIVMKWRFKS
Sbjct: 241 MLEADKGGKFHLVDGNVSGEFTDLVPEKHIVMKWRFKS 278
>ref|XP_003356805.1| PREDICTED: activator of 90 kDa heat shock protein ATPase homolog
1-like [Sus scrofa].
Length = 338
Score = 566 bits (1459), Expect = e-162
Identities = 278/278 (100%), Positives = 278/278 (100%)
Frame = +3
Query: 177 MAKWGEGDPRWIVEERADATNVNNWHWTERDASNWSTDKLKTLFLAVRVQNEEGKCEVTE 356
MAKWGEGDPRWIVEERADATNVNNWHWTERDASNWSTDKLKTLFLAVRVQNEEGKCEVTE
Sbjct: 1 MAKWGEGDPRWIVEERADATNVNNWHWTERDASNWSTDKLKTLFLAVRVQNEEGKCEVTE 60
Query: 357 VNKLDGEASINNRKGKLIFFYEWSIKLNWTGTSKSGVQYKGHVDIPNLSDENSVDEVEIS 536
VNKLDGEASINNRKGKLIFFYEWSIKLNWTGTSKSGVQYKGHVDIPNLSDENSVDEVEIS
Sbjct: 61 VNKLDGEASINNRKGKLIFFYEWSIKLNWTGTSKSGVQYKGHVDIPNLSDENSVDEVEIS 120
Query: 537 VSLAKDEPDTNLVALMKEEGVRLLREAMGIYISTLKTEFTQGMILPTMNGESVDPAGQPA 716
VSLAKDEPDTNLVALMKEEGVRLLREAMGIYISTLKTEFTQGMILPTMNGESVDPAGQPA
Sbjct: 121 VSLAKDEPDTNLVALMKEEGVRLLREAMGIYISTLKTEFTQGMILPTMNGESVDPAGQPA 180
Query: 717 LKTEERKAKSAPSKTQARPVGVKIPTCKITLRETFLTSPEELYRVFTNQELVQAFTHAPA 896
LKTEERKAKSAPSKTQARPVGVKIPTCKITLRETFLTSPEELYRVFTNQELVQAFTHAPA
Sbjct: 181 LKTEERKAKSAPSKTQARPVGVKIPTCKITLRETFLTSPEELYRVFTNQELVQAFTHAPA 240
Query: 897 MLEADKGGKFHLVDGNVSGEFTDLVPEKHIVMKWRFKS 1010
MLEADKGGKFHLVDGNVSGEFTDLVPEKHIVMKWRFKS
Sbjct: 241 MLEADKGGKFHLVDGNVSGEFTDLVPEKHIVMKWRFKS 278
>ref|XP_003125150.2| PREDICTED: activator of 90 kDa heat shock protein ATPase homolog
2-like [Sus scrofa].
Length = 295
Score = 260 bits (665), Expect = 7e-70
Identities = 138/279 (49%), Positives = 180/279 (64%), Gaps = 1/279 (0%)
Frame = +3
Query: 177 MAKWGEGDPRWIVEERADATNVNNWHWTERDASNWSTDKLKTLFLAVRVQNEEGKCEVTE 356
MAKWG+GDPRWIVEER D TNVNNWHWTERDA++WS KL+ L + + V+NE G CE++E
Sbjct: 1 MAKWGQGDPRWIVEEREDGTNVNNWHWTERDATSWSKGKLRELLVGITVENEAGHCEISE 60
Query: 357 VNKLDGEASINNRKGKLIFFYEWSIKLNWTGTSK-SGVQYKGHVDIPNLSDENSVDEVEI 533
+ +++GEAS ++RKGKLIFFYEW+IKL W G K SGV++KG ++IPNLS+EN VD+ E+
Sbjct: 61 LKQVEGEASCSSRKGKLIFFYEWNIKLGWKGIIKESGVKHKGLIEIPNLSEENEVDDTEV 120
Query: 534 SVSLAKDEPDTNLVALMKEEGVRLLREAMGIYISTLKTEFTQGMILPTMNGESVDPAGQP 713
+VS K + D L LMK G +REA+G Y+ LKTEFT GMILPT
Sbjct: 121 NVSKKKGDGDI-LKDLMKTAGTAKVREALGDYLKALKTEFTMGMILPTK----------- 168
Query: 714 ALKTEERKAKSAPSKTQARPVGVKIPTCKITLRETFLTSPEELYRVFTNQELVQAFTHAP 893
A+ T+E T K L E L +LVQ F+ +P
Sbjct: 169 AMATQEM-------------------TVKRKLSENTL-------------QLVQKFSKSP 196
Query: 894 AMLEADKGGKFHLVDGNVSGEFTDLVPEKHIVMKWRFKS 1010
A+LEA+KGGKF + DGN++GE+ +LV IVMKWR ++
Sbjct: 197 AILEAEKGGKFQMFDGNITGEYIELVSNLMIVMKWRCRN 235
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,456,034
Number of extensions: 592880
Number of successful extensions: 1773
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1766
Number of HSP's successfully gapped: 3
Length of query: 340
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 240
Effective length of database: 8,854,232
Effective search space: 2125015680
Effective search space used: 2125015680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012595
(1020 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_666148.1| activator of 90 kDa heat shock protein ATPase h... 535 e-152
Alignment gi|NP_765979.3| activator of 90 kDa heat shock protein ATPase h... 296 2e-80
>ref|NP_666148.1| activator of 90 kDa heat shock protein ATPase homolog 1 [Mus
musculus].
Length = 338
Score = 535 bits (1379), Expect = e-152
Identities = 258/278 (92%), Positives = 272/278 (97%)
Frame = +3
Query: 177 MAKWGEGDPRWIVEERADATNVNNWHWTERDASNWSTDKLKTLFLAVRVQNEEGKCEVTE 356
MAKWGEGDPRWIVEERADATNVNNWHWTERDASNWST+KLKTLFLAVRV+NEEGKCEVTE
Sbjct: 1 MAKWGEGDPRWIVEERADATNVNNWHWTERDASNWSTEKLKTLFLAVRVENEEGKCEVTE 60
Query: 357 VNKLDGEASINNRKGKLIFFYEWSIKLNWTGTSKSGVQYKGHVDIPNLSDENSVDEVEIS 536
VNKLDGEASINNRKGKLIFFYEW+IKLNWTGTSKSGVQYKGHV+IPNLSDENSVDEVEIS
Sbjct: 61 VNKLDGEASINNRKGKLIFFYEWTIKLNWTGTSKSGVQYKGHVEIPNLSDENSVDEVEIS 120
Query: 537 VSLAKDEPDTNLVALMKEEGVRLLREAMGIYISTLKTEFTQGMILPTMNGESVDPAGQPA 716
VSLAKDEPDTNLVALMKE+GV+LLREA+GIYISTLKTEFTQGMILPT+NGESVDP GQPA
Sbjct: 121 VSLAKDEPDTNLVALMKEDGVKLLREAVGIYISTLKTEFTQGMILPTVNGESVDPVGQPA 180
Query: 717 LKTEERKAKSAPSKTQARPVGVKIPTCKITLRETFLTSPEELYRVFTNQELVQAFTHAPA 896
LKTE KAKSAPSK+QA+PVGVKIPTCKITL+ETFLTSPEELYRVFT QELVQAFTHAPA
Sbjct: 181 LKTETCKAKSAPSKSQAKPVGVKIPTCKITLKETFLTSPEELYRVFTTQELVQAFTHAPA 240
Query: 897 MLEADKGGKFHLVDGNVSGEFTDLVPEKHIVMKWRFKS 1010
LEAD+GGKFH+VDGNV+GEFTDLVPEKHI MKWRFKS
Sbjct: 241 ALEADRGGKFHMVDGNVTGEFTDLVPEKHIAMKWRFKS 278
>ref|NP_765979.3| activator of 90 kDa heat shock protein ATPase homolog 2 [Mus
musculus].
Length = 331
Score = 296 bits (758), Expect = 2e-80
Identities = 148/283 (52%), Positives = 204/283 (72%), Gaps = 5/283 (1%)
Frame = +3
Query: 177 MAKWGEGDPRWIVEERADATNVNNWHWTERDASNWSTDKLKTLFLAVRVQNEEGKCEVTE 356
MAKWG+GDPRWIVEER D TNVNNWHWTERDA+ WS KL+ L + + ++NE G+CE++E
Sbjct: 1 MAKWGQGDPRWIVEEREDGTNVNNWHWTERDATIWSKGKLRELLVGIAMENEAGRCEISE 60
Query: 357 VNKLDGEASINNRKGKLIFFYEWSIKLNWTGTSK-SGVQYKGHVDIPNLSDENSVDEVEI 533
+ +++GEAS N+RKGKLIFFYEW+IKL W GT K SG ++KG ++IP+LS+EN +++ E+
Sbjct: 61 LKQVEGEASCNSRKGKLIFFYEWNIKLAWKGTVKESGAKHKGLIEIPSLSEENEINDTEV 120
Query: 534 SVSLAKDEPDTNLVALMKEEGVRLLREAMGIYISTLKTEFTQGMILPTMNGESVDPAGQP 713
+VS K + + L LM+ G +REA+G Y+ LKTEFT GMILPT
Sbjct: 121 NVSKKKGDGEI-LKDLMRTTGTAKVREALGEYLKALKTEFTTGMILPT-----------K 168
Query: 714 ALKTEE--RKAKSAPSKTQARPV--GVKIPTCKITLRETFLTSPEELYRVFTNQELVQAF 881
A+ T+E + K +K QA PV GV+IPT + L E F T+ E+LY +FT +ELVQ F
Sbjct: 169 AVATQELTLQRKLNENKLQASPVALGVRIPTVALHLTELFDTTVEQLYSIFTVKELVQKF 228
Query: 882 THAPAMLEADKGGKFHLVDGNVSGEFTDLVPEKHIVMKWRFKS 1010
+ +PA+LEA++GGKF + DGN+SGE+ +LV + I+MKWR ++
Sbjct: 229 SKSPAVLEAERGGKFQMFDGNISGEYVELVTNRKIIMKWRCRN 271
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,565,383
Number of extensions: 790677
Number of successful extensions: 2336
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2332
Number of HSP's successfully gapped: 2
Length of query: 340
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 238
Effective length of database: 12,553,887
Effective search space: 2987825106
Effective search space used: 2987825106
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012595
(1020 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036243.1| activator of 90 kDa heat shock protein ATPase h... 548 e-156
>ref|NP_036243.1| activator of 90 kDa heat shock protein ATPase homolog 1 [Homo
sapiens].
Length = 338
Score = 548 bits (1413), Expect = e-156
Identities = 266/278 (95%), Positives = 274/278 (98%)
Frame = +3
Query: 177 MAKWGEGDPRWIVEERADATNVNNWHWTERDASNWSTDKLKTLFLAVRVQNEEGKCEVTE 356
MAKWGEGDPRWIVEERADATNVNNWHWTERDASNWSTDKLKTLFLAV+VQNEEGKCEVTE
Sbjct: 1 MAKWGEGDPRWIVEERADATNVNNWHWTERDASNWSTDKLKTLFLAVQVQNEEGKCEVTE 60
Query: 357 VNKLDGEASINNRKGKLIFFYEWSIKLNWTGTSKSGVQYKGHVDIPNLSDENSVDEVEIS 536
V+KLDGEASINNRKGKLIFFYEWS+KLNWTGTSKSGVQYKGHV+IPNLSDENSVDEVEIS
Sbjct: 61 VSKLDGEASINNRKGKLIFFYEWSVKLNWTGTSKSGVQYKGHVEIPNLSDENSVDEVEIS 120
Query: 537 VSLAKDEPDTNLVALMKEEGVRLLREAMGIYISTLKTEFTQGMILPTMNGESVDPAGQPA 716
VSLAKDEPDTNLVALMKEEGV+LLREAMGIYISTLKTEFTQGMILPTMNGESVDP GQPA
Sbjct: 121 VSLAKDEPDTNLVALMKEEGVKLLREAMGIYISTLKTEFTQGMILPTMNGESVDPVGQPA 180
Query: 717 LKTEERKAKSAPSKTQARPVGVKIPTCKITLRETFLTSPEELYRVFTNQELVQAFTHAPA 896
LKTEERKAK APSKTQARPVGVKIPTCKITL+ETFLTSPEELYRVFT QELVQAFTHAPA
Sbjct: 181 LKTEERKAKPAPSKTQARPVGVKIPTCKITLKETFLTSPEELYRVFTTQELVQAFTHAPA 240
Query: 897 MLEADKGGKFHLVDGNVSGEFTDLVPEKHIVMKWRFKS 1010
LEAD+GGKFH+VDGNVSGEFTDLVPEKHIVMKWRFKS
Sbjct: 241 TLEADRGGKFHMVDGNVSGEFTDLVPEKHIVMKWRFKS 278
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,291,061
Number of extensions: 939234
Number of successful extensions: 2983
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2982
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 237
Effective length of database: 14,901,872
Effective search space: 3531743664
Effective search space used: 3531743664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012595
(1020 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 432 e-118
Sscrofa_Chr03 82 7e-13
>Sscrofa_Chr07
|| Length = 134764511
Score = 432 bits (218), Expect = e-118
Identities = 218/218 (100%)
Strand = Plus / Minus
Query: 40 tggagggaaaagcaagctaggaggatctgcggccgcttctagtagtttccaggcgctgcc 99
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106765075 tggagggaaaagcaagctaggaggatctgcggccgcttctagtagtttccaggcgctgcc 106765016
Query: 100 gggcggctgggaccgggcggtcctgaggctgtggctgtggctgcttaggcgctggtggcg 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106765015 gggcggctgggaccgggcggtcctgaggctgtggctgtggctgcttaggcgctggtggcg 106764956
Query: 160 gcgcgataggcgagccgatggctaagtggggtgagggcgacccacgctggatcgtggagg 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106764955 gcgcgataggcgagccgatggctaagtggggtgagggcgacccacgctggatcgtggagg 106764896
Query: 220 agcgggcggacgccaccaacgtcaacaactggcattgg 257
||||||||||||||||||||||||||||||||||||||
Sbjct: 106764895 agcgggcggacgccaccaacgtcaacaactggcattgg 106764858
Score = 416 bits (210), Expect = e-113
Identities = 217/218 (99%), Gaps = 1/218 (0%)
Strand = Plus / Minus
Query: 40 tggagggaaaagcaagctaggaggatctgcggccgcttctagtagtttccaggcgctgcc 99
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 106444827 tggagggaaaagcaagctaggaggatctgcg-ccgcttctagtagtttccaggcgctgcc 106444769
Query: 100 gggcggctgggaccgggcggtcctgaggctgtggctgtggctgcttaggcgctggtggcg 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106444768 gggcggctgggaccgggcggtcctgaggctgtggctgtggctgcttaggcgctggtggcg 106444709
Query: 160 gcgcgataggcgagccgatggctaagtggggtgagggcgacccacgctggatcgtggagg 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106444708 gcgcgataggcgagccgatggctaagtggggtgagggcgacccacgctggatcgtggagg 106444649
Query: 220 agcgggcggacgccaccaacgtcaacaactggcattgg 257
||||||||||||||||||||||||||||||||||||||
Sbjct: 106444648 agcgggcggacgccaccaacgtcaacaactggcattgg 106444611
Score = 387 bits (195), Expect = e-105
Identities = 195/195 (100%)
Strand = Plus / Minus
Query: 256 ggacagagagggatgcttcaaattggtccacagataagctgaaaacactgttcctggcag 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106442972 ggacagagagggatgcttcaaattggtccacagataagctgaaaacactgttcctggcag 106442913
Query: 316 tgcgggtgcaaaatgaggaaggcaagtgcgaggtgacagaagtgaataagcttgatgggg 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106442912 tgcgggtgcaaaatgaggaaggcaagtgcgaggtgacagaagtgaataagcttgatgggg 106442853
Query: 376 aggcatccattaacaatcgtaaaggcaaacttatcttcttttatgagtggagcatcaaac 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106442852 aggcatccattaacaatcgtaaaggcaaacttatcttcttttatgagtggagcatcaaac 106442793
Query: 436 taaactggacaggta 450
|||||||||||||||
Sbjct: 106442792 taaactggacaggta 106442778
Score = 387 bits (195), Expect = e-105
Identities = 195/195 (100%)
Strand = Plus / Minus
Query: 256 ggacagagagggatgcttcaaattggtccacagataagctgaaaacactgttcctggcag 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106763219 ggacagagagggatgcttcaaattggtccacagataagctgaaaacactgttcctggcag 106763160
Query: 316 tgcgggtgcaaaatgaggaaggcaagtgcgaggtgacagaagtgaataagcttgatgggg 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106763159 tgcgggtgcaaaatgaggaaggcaagtgcgaggtgacagaagtgaataagcttgatgggg 106763100
Query: 376 aggcatccattaacaatcgtaaaggcaaacttatcttcttttatgagtggagcatcaaac 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106763099 aggcatccattaacaatcgtaaaggcaaacttatcttcttttatgagtggagcatcaaac 106763040
Query: 436 taaactggacaggta 450
|||||||||||||||
Sbjct: 106763039 taaactggacaggta 106763025
Score = 260 bits (131), Expect = 1e-66
Identities = 131/131 (100%)
Strand = Plus / Minus
Query: 736 aggctaagtctgctccttcaaaaacccaggccagacctgttggtgtcaaaatccccactt 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106436778 aggctaagtctgctccttcaaaaacccaggccagacctgttggtgtcaaaatccccactt 106436719
Query: 796 gtaaaatcacccttagagagaccttcctgacatcaccagaggagctctatagagttttca 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106436718 gtaaaatcacccttagagagaccttcctgacatcaccagaggagctctatagagttttca 106436659
Query: 856 ccaaccaagag 866
|||||||||||
Sbjct: 106436658 ccaaccaagag 106436648
Score = 260 bits (131), Expect = 1e-66
Identities = 131/131 (100%)
Strand = Plus / Minus
Query: 736 aggctaagtctgctccttcaaaaacccaggccagacctgttggtgtcaaaatccccactt 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106758603 aggctaagtctgctccttcaaaaacccaggccagacctgttggtgtcaaaatccccactt 106758544
Query: 796 gtaaaatcacccttagagagaccttcctgacatcaccagaggagctctatagagttttca 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106758543 gtaaaatcacccttagagagaccttcctgacatcaccagaggagctctatagagttttca 106758484
Query: 856 ccaaccaagag 866
|||||||||||
Sbjct: 106758483 ccaaccaagag 106758473
Score = 238 bits (120), Expect = 5e-60
Identities = 120/120 (100%)
Strand = Plus / Minus
Query: 529 agattagtgtgagccttgccaaagatgagcctgacacaaatctcgtggccttaatgaagg 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106439333 agattagtgtgagccttgccaaagatgagcctgacacaaatctcgtggccttaatgaagg 106439274
Query: 589 aagaaggggtgagactcctaagagaagcaatgggaatttacatcagcaccctcaaaacag 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106439273 aagaaggggtgagactcctaagagaagcaatgggaatttacatcagcaccctcaaaacag 106439214
Score = 238 bits (120), Expect = 5e-60
Identities = 120/120 (100%)
Strand = Plus / Minus
Query: 529 agattagtgtgagccttgccaaagatgagcctgacacaaatctcgtggccttaatgaagg 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106761158 agattagtgtgagccttgccaaagatgagcctgacacaaatctcgtggccttaatgaagg 106761099
Query: 589 aagaaggggtgagactcctaagagaagcaatgggaatttacatcagcaccctcaaaacag 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106761098 aagaaggggtgagactcctaagagaagcaatgggaatttacatcagcaccctcaaaacag 106761039
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Minus
Query: 865 agcttgttcaggcctttacccacgctcctgcgatgttagaagcagacaagggcggcaagt 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106436213 agcttgttcaggcctttacccacgctcctgcgatgttagaagcagacaagggcggcaagt 106436154
Query: 925 ttcacctggtcgatggcaatgtttctggagaattcactgatctggt 970
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106436153 ttcacctggtcgatggcaatgtttctggagaattcactgatctggt 106436108
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Minus
Query: 865 agcttgttcaggcctttacccacgctcctgcgatgttagaagcagacaagggcggcaagt 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106758038 agcttgttcaggcctttacccacgctcctgcgatgttagaagcagacaagggcggcaagt 106757979
Query: 925 ttcacctggtcgatggcaatgtttctggagaattcactgatctggt 970
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106757978 ttcacctggtcgatggcaatgtttctggagaattcactgatctggt 106757933
Score = 184 bits (93), Expect = 6e-44
Identities = 93/93 (100%)
Strand = Plus / Minus
Query: 646 cagagttcacgcagggtatgatcttgcctacaatgaatggagagtcggtagacccagccg 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106438142 cagagttcacgcagggtatgatcttgcctacaatgaatggagagtcggtagacccagccg 106438083
Query: 706 ggcagccagcactgaaaaccgaggagcgcaagg 738
|||||||||||||||||||||||||||||||||
Sbjct: 106438082 ggcagccagcactgaaaaccgaggagcgcaagg 106438050
Score = 184 bits (93), Expect = 6e-44
Identities = 93/93 (100%)
Strand = Plus / Minus
Query: 646 cagagttcacgcagggtatgatcttgcctacaatgaatggagagtcggtagacccagccg 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106759967 cagagttcacgcagggtatgatcttgcctacaatgaatggagagtcggtagacccagccg 106759908
Query: 706 ggcagccagcactgaaaaccgaggagcgcaagg 738
|||||||||||||||||||||||||||||||||
Sbjct: 106759907 ggcagccagcactgaaaaccgaggagcgcaagg 106759875
Score = 174 bits (88), Expect = 6e-41
Identities = 88/88 (100%)
Strand = Plus / Minus
Query: 443 gacaggtacctcgaagtctggagtgcagtacaagggccacgtggacatccccaacttgtc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106439821 gacaggtacctcgaagtctggagtgcagtacaagggccacgtggacatccccaacttgtc 106439762
Query: 503 tgatgaaaacagcgtggatgaagtggag 530
||||||||||||||||||||||||||||
Sbjct: 106439761 tgatgaaaacagcgtggatgaagtggag 106439734
Score = 174 bits (88), Expect = 6e-41
Identities = 88/88 (100%)
Strand = Plus / Minus
Query: 443 gacaggtacctcgaagtctggagtgcagtacaagggccacgtggacatccccaacttgtc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106761646 gacaggtacctcgaagtctggagtgcagtacaagggccacgtggacatccccaacttgtc 106761587
Query: 503 tgatgaaaacagcgtggatgaagtggag 530
||||||||||||||||||||||||||||
Sbjct: 106761586 tgatgaaaacagcgtggatgaagtggag 106761559
Score = 91.7 bits (46), Expect = 7e-16
Identities = 53/54 (98%), Gaps = 1/54 (1%)
Strand = Plus / Minus
Query: 968 ggtccctgagaaacatatcgtgatgaagtggaggtttaaatc-tggccagaagg 1020
|||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 106435656 ggtccctgagaaacatatcgtgatgaagtggaggtttaaatcttggccagaagg 106435603
Score = 91.7 bits (46), Expect = 7e-16
Identities = 53/54 (98%), Gaps = 1/54 (1%)
Strand = Plus / Minus
Query: 968 ggtccctgagaaacatatcgtgatgaagtggaggtttaaatc-tggccagaagg 1020
|||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 106757481 ggtccctgagaaacatatcgtgatgaagtggaggtttaaatcttggccagaagg 106757428
>Sscrofa_Chr03
|| Length = 144787322
Score = 81.8 bits (41), Expect = 7e-13
Identities = 68/77 (88%)
Strand = Plus / Plus
Query: 177 atggctaagtggggtgagggcgacccacgctggatcgtggaggagcgggcggacgccacc 236
||||| |||||||| |||| ||||| |||||||||||||||||||||| ||||| |||
Sbjct: 84528152 atggccaagtggggccagggggacccgcgctggatcgtggaggagcgggaggacgggacc 84528211
Query: 237 aacgtcaacaactggca 253
||||| |||||||||||
Sbjct: 84528212 aacgtgaacaactggca 84528228
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,597,617
Number of extensions: 655
Number of successful extensions: 655
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 654
Number of HSP's successfully gapped: 17
Length of query: 1020
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 999
Effective length of database: 2,808,413,156
Effective search space: 2805604742844
Effective search space used: 2805604742844
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)