Animal-Genome cDNA 20110601C-012596


Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012596
         (1129 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_531907.1| PREDICTED: similar to Voltage-dependent anion-s...   573   e-163
Alignment   gi|XP_536597.1| PREDICTED: similar to Voltage-dependent anion-s...   487   e-138
Alignment   gi|XP_536398.2| PREDICTED: similar to voltage-dependent anion c...   461   e-130
Alignment   gi|XP_851742.1| PREDICTED: similar to voltage-dependent anion c...   461   e-130
Alignment   gi|XP_848519.1| PREDICTED: similar to Voltage-dependent anion-s...   408   e-114
Alignment   gi|XP_532686.2| PREDICTED: similar to Voltage-dependent anion-s...   408   e-114
Alignment   gi|XP_856263.1| PREDICTED: similar to Voltage-dependent anion-s...   343   1e-94
Alignment   gi|XP_867456.1| PREDICTED: similar to Voltage-dependent anion-s...   343   1e-94
Alignment   gi|XP_855226.1| PREDICTED: similar to Voltage-dependent anion-s...   302   3e-82
Alignment   gi|XP_864350.1| PREDICTED: similar to voltage-dependent anion c...   155   5e-38

>ref|XP_531907.1| PREDICTED: similar to Voltage-dependent anion-selective channel
           protein 1 (VDAC-1) (hVDAC1) (Outer mitochondrial
           membrane protein porin 1) (Plasmalemmal porin) (Porin
           31HL) (Porin 31HM) [Canis familiaris].
          Length = 283

 Score =  573 bits (1477), Expect = e-163
 Identities = 282/283 (99%), Positives = 283/283 (100%)
 Frame = +2

Query: 83  MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 262
           MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET
Sbjct: 1   MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 60

Query: 263 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 442
           KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR
Sbjct: 61  KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 120

Query: 443 EHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 622
           EH+NLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL
Sbjct: 121 EHINLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 180

Query: 623 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 802
           HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS
Sbjct: 181 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 240

Query: 803 SLIGLGYTQTLKPGIKLTLSALLDGKN

Animal-Genome cDNA 20110601C-012596


Animal-Genome cDNA 20110601C-012596


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012596
         (1129 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_776910.2| voltage-dependent anion-selective channel prote...   570   e-163
Alignment   gi|NP_776911.2| voltage-dependent anion-selective channel prote...   461   e-130
Alignment   gi|XP_001252363.1| PREDICTED: voltage-dependent anion-selective...   456   e-128
Alignment   gi|XP_002687714.1| PREDICTED: voltage-dependent anion-selective...   454   e-128
Alignment   gi|NP_777154.1| voltage-dependent anion-selective channel prote...   412   e-115
Alignment   gi|XP_001788121.1| PREDICTED: voltage-dependent anion channel 2...   288   5e-78

>ref|NP_776910.2| voltage-dependent anion-selective channel protein 1 [Bos taurus].
          Length = 283

 Score =  570 bits (1469), Expect = e-163
 Identities = 281/283 (99%), Positives = 282/283 (99%)
 Frame = +2

Query: 83  MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 262
           MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET
Sbjct: 1   MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 60

Query: 263 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 442
           KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR
Sbjct: 61  KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 120

Query: 443 EHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 622
           EH+NLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL
Sbjct: 121 EHINLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 180

Query: 623 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 802
           HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS
Sbjct: 181 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 240

Query: 803 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 931
           SLIGL YTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA
Sbjct: 241 SLIGLRYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 283


>ref|NP_776911.2| voltage-dependent anion-selective channel protein 2 [Bos taurus].
          Length = 294

 Score =  461 bits (1185), Expect = e-130
 Identities = 212/283 (74%), Positives = 258/283 (91%)
 Frame = +2

Query: 83  MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 262
           M +PP+YADLGK+ARD+F KG+GFGL+KLD+KTKS +G+EF++SGS+NT+T KVTG+LET
Sbjct: 12  MCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLET 71

Query: 263 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 442
           KY+W EYGLTFTEKWNTDNTLGTEI +EDQ+ +GLKLTFD++FSPNTGKK+ KIK+ YKR
Sbjct: 72  KYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGKKSGKIKSSYKR 131

Query: 443 EHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 622
           E +NLGCDVDFD AGP+I G+ V GYEGWLAGYQM F++AKS++T++NFAVGY+T +FQL
Sbjct: 132 ECINLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQL 191

Query: 623 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 802
           HTNVNDGTEFGGSIYQKV + L+T+VNLAWT+G + TRFGIAAKYQ+DP A  SAKVNNS
Sbjct: 192 HTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNS 251

Query: 803 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 931
           SLIG+GYTQTL+PG+KLTLSAL+DGK++NAGGHKLGL LE +A
Sbjct: 252 SLIGVGYTQTLRPGVKLTLSALVDGKSINAGGHKLGLALELEA 294


>ref|XP_001252363.1| PREDICTED: voltage-dependent anion-selective channel protein 2-like
           [Bos taurus].
          Length = 294

 Score =  456 bits (1172), Expect = e-128
 Identities = 210/283 (74%), Positives = 257/283 (90%)
 Frame = +2

Query: 83  MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 262
           + +PP+YADLGK+ARD+F KG+GFGL+KLD+KTKS +G+EF++SGS+NT+T KVTG+LET
Sbjct: 12  VCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLET 71

Query: 263 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 442
           KY+W EYGLTFTEKWNTDNTLGTEI ++DQ+ +GLKLTFD++FSPNTGKK+ KIK+ YKR
Sbjct: 72  KYKWCEYGLTFTEKWNTDNTLGTEIAIKDQICQGLKLTFDTTFSPNTGKKSGKIKSSYKR 131

Query: 443 EHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 622
           E +NLGCDVDFD AGP+I G+ V GYEGWLAGYQM F++AKS++T++NFAVGY+T +FQL
Sbjct: 132 ECINLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQL 191

Query: 623 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 802
           HTNVNDGTEFGGSIYQKV + L+T+VNLAWT+G + TRFGIAAKYQ+DP A  SAKVNNS
Sbjct: 192 HTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNS 251

Query: 803 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 931
           SLIG+G TQTL+PG+KLTLSAL+DGKN+NAGGHKLGL LE +A
Sbjct: 252 SLIGVGDTQTLRPGVKLTLSALVDGKNINAGGHKLGLALELEA 294


>ref|XP_002687714.1| PREDICTED: voltage-dependent anion-selective channel protein 2-like
           [Bos taurus].
          Length = 294

 Score =  454 bits (1168), Expect = e-128
 Identities = 209/283 (73%), Positives = 257/283 (90%)
 Frame = +2

Query: 83  MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 262
           + +PP+YADLGK+ARD+F KG+GFGL+KLD+KTKS +G+EF++SGS+NT+T KVTG+LET
Sbjct: 12  VCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLET 71

Query: 263 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 442
           KY+W EYGLTFTEKWNTDNTLGTEI ++DQ+ +GLKLTFD++FSPNTGKK+ KIK+ YKR
Sbjct: 72  KYKWCEYGLTFTEKWNTDNTLGTEIAIKDQICQGLKLTFDTTFSPNTGKKSGKIKSSYKR 131

Query: 443 EHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 622
           E +NLGCDVDFD AGP+I G+ V GY+GWLAGYQM F++AKS++T++NFAVGY+T +FQL
Sbjct: 132 ECINLGCDVDFDFAGPAIHGSAVFGYKGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQL 191

Query: 623 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 802
           HTNVNDGTEFGGSIYQKV + L+T+VNLAWT+G + TRFGIAAKYQ+DP A  SAKVNNS
Sbjct: 192 HTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNS 251

Query: 803 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 931
           SLIG+G TQTL+PG+KLTLSAL+DGKN+NAGGHKLGL LE +A
Sbjct: 252 SLIGVGDTQTLRPGVKLTLSALVDGKNINAGGHKLGLALELEA 294


>ref|NP_777154.1| voltage-dependent anion-selective channel protein 3 [Bos taurus].
          Length = 283

 Score =  412 bits (1058), Expect = e-115
 Identities = 193/283 (68%), Positives = 243/283 (85%)
 Frame = +2

Query: 83  MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 262
           M   PTY DLGK+A+DVF KGYGFG++K+DL+TKS +G+EF++SG A T+T K +G+LET
Sbjct: 1   MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLRTKSCSGVEFSTSGHAYTDTGKASGNLET 60

Query: 263 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 442
           KY+   YGLTFT+KWNTDNTLGTEI+ E++LA VNAGGHKLGLGLEFQA 931
           SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA
Sbjct: 241 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 283


>ref|XP_536597.1| PREDICTED: similar to Voltage-dependent anion-selective channel
           protein 1 (VDAC-1) (hVDAC1) (Outer mitochondrial
           membrane protein porin 1) (Plasmalemmal porin) (Porin
           31HL) (Porin 31HM) [Canis familiaris].
          Length = 256

 Score =  487 bits (1254), Expect = e-138
 Identities = 239/250 (95%), Positives = 243/250 (97%)
 Frame = +2

Query: 83  MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 262
           M VPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTS GSANTETTKVTGSLET
Sbjct: 1   MPVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSWGSANTETTKVTGSLET 60

Query: 263 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 442
           KYRWTEYGLTFTEK +TDNTLGTEITVEDQLARGLKLTFDSSFSPNTG KNAKIKTGYKR
Sbjct: 61  KYRWTEYGLTFTEKRDTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGGKNAKIKTGYKR 120

Query: 443 EHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 622
           EH+NLGCD+DFDIAGPSIRGALVLGYEGWLAGYQ+NFETAKSRVTQSNF VGYKTDEFQL
Sbjct: 121 EHINLGCDMDFDIAGPSIRGALVLGYEGWLAGYQVNFETAKSRVTQSNFVVGYKTDEFQL 180

Query: 623 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 802
           HTNVNDGTEFGGSIYQKVNKKLET VNLAWTAGNSNTRFGI AKYQIDPDACFSAKVNNS
Sbjct: 181 HTNVNDGTEFGGSIYQKVNKKLETTVNLAWTAGNSNTRFGIVAKYQIDPDACFSAKVNNS 240

Query: 803 SLIGLGYTQT 832
           SLIGLGYTQT
Sbjct: 241 SLIGLGYTQT 250


>ref|XP_536398.2| PREDICTED: similar to voltage-dependent anion channel 2 isoform 1
           [Canis familiaris].
          Length = 294

 Score =  461 bits (1186), Expect = e-130
 Identities = 213/283 (75%), Positives = 258/283 (91%)
 Frame = +2

Query: 83  MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 262
           M VPP+YADLGK+ARD+F KG+GFGL+KLD+KTKS +G+EF++SGS+NT+T KVTG+LET
Sbjct: 12  MCVPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLET 71

Query: 263 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 442
           KY+W EYGLTFTEKWNTDNTLGTEI +EDQ+ +GLKLTFD++FSPNTGKK+ KIK+ YKR
Sbjct: 72  KYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGKKSGKIKSSYKR 131

Query: 443 EHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 622
           E +NLGCDVDFD AGP+I G+ V GYEGWLAGYQM F++AKS++T++NFAVGY+T +FQL
Sbjct: 132 ECINLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQL 191

Query: 623 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 802
           HTNVNDGTEFGGSIYQKV + L+T+VNLAWT+G + TRFGIAAKYQ+DP A  SAKVNNS
Sbjct: 192 HTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNS 251

Query: 803 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 931
           SLIG+GYTQTL+PG+KLTLSAL+DGK++NAGGHKLGL LE +A
Sbjct: 252 SLIGVGYTQTLRPGVKLTLSALVDGKSINAGGHKLGLALELEA 294


>ref|XP_851742.1| PREDICTED: similar to voltage-dependent anion channel 2 isoform 2
           [Canis familiaris].
          Length = 294

 Score =  461 bits (1186), Expect = e-130
 Identities = 213/283 (75%), Positives = 258/283 (91%)
 Frame = +2

Query: 83  MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 262
           M VPP+YADLGK+ARD+F KG+GFGL+KLD+KTKS +G+EF++SGS+NT+T KVTG+LET
Sbjct: 12  MCVPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLET 71

Query: 263 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 442
           KY+W EYGLTFTEKWNTDNTLGTEI +EDQ+ +GLKLTFD++FSPNTGKK+ KIK+ YKR
Sbjct: 72  KYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGKKSGKIKSSYKR 131

Query: 443 EHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 622
           E +NLGCDVDFD AGP+I G+ V GYEGWLAGYQM F++AKS++T++NFAVGY+T +FQL
Sbjct: 132 ECINLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQL 191

Query: 623 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 802
       GLKLT D+ F PNTGKK+ K+K  YKR
Sbjct: 61  KYKICNYGLTFTQKWNTDNTLGTEISWENKLAEGLKLTLDTIFVPNTGKKSGKLKASYKR 120

Query: 443 EHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 622
           +  +LG +VD D +GP+I G  VL +EGWLAGYQM+F+TAKS+++Q+NFA+GYK  +FQL
Sbjct: 121 DCFSLGSNVDIDFSGPTIYGWAVLAFEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQL 180

Query: 623 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 802
           HT+VNDGTEFGGSIYQKVN+K+ET++NLAWTAG++NTRFGIAAKY++D     SAKVNN+
Sbjct: 181 HTHVNDGTEFGGSIYQKVNEKIETSINLAWTAGSNNTRFGIAAKYKLDCRTSLSAKVNNA 240

Query: 803 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 931
           SLIGLGYTQTL+PG+KLTLSAL+DGKN NAGGHK+GLG E +A
Sbjct: 241 SLIGLGYTQTLRPGVKLTLSALIDGKNFNAGGHKVGLGFELEA 283


>ref|XP_001788121.1| PREDICTED: voltage-dependent anion channel 2-like, partial [Bos
           taurus].
          Length = 179

 Score =  288 bits (738), Expect = 5e-78
 Identities = 135/179 (75%), Positives = 160/179 (89%)
 Frame = +2

Query: 395 PNTGKKNAKIKTGYKREHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRV 574
           PNTGKK+ KIK+ YKRE +NLGCDVDFD AGP+I G+ V GYEGWLAGYQM F++AKS++
Sbjct: 1   PNTGKKSGKIKSSYKRECINLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKL 60

Query: 575 TQSNFAVGYKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAK 754
           T++NFAVGY+T +FQLHTNVNDGTEFGGSIYQKV + L+T+VNLAWT+G + TRFGIAAK
Sbjct: 61  TRNNFAVGYRTGDFQLHTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAK 120

Query: 755 YQIDPDACFSAKVNNSSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 931
           YQ+DP A  SAKVNNSSLIG+G TQTL+PG+KLTLSAL+DGKN+NAGGHKLGL LE +A
Sbjct: 121 YQLDPTASISAKVNNSSLIGVGDTQTLRPGVKLTLSALVDGKNINAGGHKLGLALELEA 179


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,875,775
Number of extensions: 1032285
Number of successful extensions: 3063
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3061
Number of HSP's successfully gapped: 6
Length of query: 376
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 272
Effective length of database: 14,240,222
Effective search space: 3873340384
Effective search space used: 3873340384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
HTNVNDGTEFGGSIYQKV + L+T+VNLAWT+G + TRFGIAAKYQ+DP A SAKVNNS Sbjct: 192 HTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNS 251 Query: 803 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 931 SLIG+GYTQTL+PG+KLTLSAL+DGK++NAGGHKLGL LE +A Sbjct: 252 SLIGVGYTQTLRPGVKLTLSALVDGKSINAGGHKLGLALELEA 294 >ref|XP_848519.1| PREDICTED: similar to Voltage-dependent anion-selective channel protein 3 (VDAC-3) (mVDAC3) (Outer mitochondrial membrane protein porin 3) isoform 1 [Canis familiaris]. Length = 284 Score = 408 bits (1048), Expect = e-114 Identities = 192/284 (67%), Positives = 244/284 (85%), Gaps = 1/284 (0%) Frame = +2 Query: 83 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENG-LEFTSSGSANTETTKVTGSLE 259 M PTY DLGK+A+DVF KGYGFG++K+DL+TKS +G +EF++SG A T+T K +G+LE Sbjct: 1 MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLRTKSCSGVMEFSTSGHAYTDTGKASGNLE 60 Query: 260 TKYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYK 439 TKY+ YGLTFT+KWNTDNTLGTEI++E++LA GLKLT D+ F PNTGKK+ K+K YK Sbjct: 61 TKYKVCNYGLTFTQKWNTDNTLGTEISLENKLAEGLKLTLDTIFVPNTGKKSGKLKASYK 120 Query: 440 REHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQ 619 R+ ++G +VD D +GP+I G VL +EGWLAGYQM+F+TAKS+++Q+NFA+GYK +FQ Sbjct: 121 RDCFSVGSNVDIDFSGPTIYGWAVLAFEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQ 180 Query: 620 LHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNN 799 LHT+VNDGTEFGGSIYQKVN+K+ET++NLAWTAG++NTRFGIAAKY++D SAKVNN Sbjct: 181 LHTHVNDGTEFGGSIYQKVNEKIETSINLAWTAGSNNTRFGIAAKYKLDCRTSLSAKVNN 240 Query: 800 SSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 931 +SLIGLGYTQTL+PG+KLTLSAL+DGKN NAGGHK+GLG E +A Sbjct: 241 ASLIGLGYTQTLRPGVKLTLSALIDGKNFNAGGHKVGLGFELEA 284 >ref|XP_532686.2| PREDICTED: similar to Voltage-dependent anion-selective channel protein 3 (VDAC-3) (mVDAC3) (Outer mitochondrial membrane protein porin 3) isoform 1 [Canis familiaris]. Length = 283 Score = 408 bits (1048), Expect = e-114 Identities = 190/283 (67%), Positives = 242/283 (85%) Frame = +2 Query: 83 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 262 M PTY DLGK+A+DVF KGYGFG++K+DL+TKS +G+EF++SG A T+T K +G+LET Sbjct: 1 MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLRTKSCSGVEFSTSGHAYTDTGKASGNLET 60 Query: 263 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 442 KY+ YGLTFT+KWNTDNTLGTEI++E++LA GLKLT D+ F PNTGKK+ K+K YKR Sbjct: 61 KYKVCNYGLTFTQKWNTDNTLGTEISLENKLAEGLKLTLDTIFVPNTGKKSGKLKASYKR 120 Query: 443 EHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 622 + ++G +VD D +GP+I G VL +EGWLAGYQM+F+TAK +++Q+NFA+GYK +FQL Sbjct: 121 DCFSVGSNVDIDFSGPTIYGWAVLAFEGWLAGYQMSFDTAKFKLSQNNFALGYKAADFQL 180 Query: 623 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 802 HT+VNDGTEFGGSIYQKVN+K+ET++NLAWTAG++NT FGIAAKY++D SAKVNN+ Sbjct: 181 HTHVNDGTEFGGSIYQKVNEKIETSINLAWTAGSNNTHFGIAAKYKLDCRTSLSAKVNNA 240 Query: 803 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 931 SLIGLGYTQTL+PG+KLTLSAL+DGKN NAGGHK+GLG E +A Sbjct: 241 SLIGLGYTQTLRPGVKLTLSALIDGKNFNAGGHKVGLGFELEA 283 >ref|XP_856263.1| PREDICTED: similar to Voltage-dependent anion-selective channel protein 3 (VDAC-3) (hVDAC3) (Outer mitochondrial membrane protein porin 3) isoform 2 [Canis familiaris]. Length = 248 Score = 343 bits (881), Expect = 1e-94 Identities = 162/246 (65%), Positives = 209/246 (84%), Gaps = 1/246 (0%) Frame = +2 Query: 83 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENG-LEFTSSGSANTETTKVTGSLE 259 M PTY DLGK+A+DVF KGYGFG++K+DL+TKS +G +EF++SG A T+T K +G+LE Sbjct: 1 MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLRTKSCSGVMEFSTSGHAYTDTGKASGNLE 60 Query: 260 TKYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYK 439 TKY+ YGLTFT+KWNTDNTLGTEI++E++LA GLKLT D+ F PNTGKK+ K+K YK Sbjct: 61 TKYKVCNYGLTFTQKWNTDNTLGTEISLENKLAEGLKLTLDTIFVPNTGKKSGKLKASYK 120 Query: 440 REHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQ 619 R+ ++G +VD D +GP+I G VL +EGWLAGYQM+F+TAKS+++Q+NFA+GYK +FQ Sbjct: 121 RDCFSVGSNVDIDFSGPTIYGWAVLAFEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQ 180 Query: 620 LHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNN 799 LHT+VNDGTEFGGSIYQKVN+K+ET++NLAWTAG++NTRFGIAAKY++D SAKVNN Sbjct: 181 LHTHVNDGTEFGGSIYQKVNEKIETSINLAWTAGSNNTRFGIAAKYKLDCRTSLSAKVNN 240 Query: 800 SSLIGL 817 +SLIGL Sbjct: 241 ASLIGL 246 >ref|XP_867456.1| PREDICTED: similar to Voltage-dependent anion-selective channel protein 3 (VDAC-3) (hVDAC3) (Outer mitochondrial membrane protein porin 3) isoform 2 [Canis familiaris]. Length = 247 Score = 343 bits (881), Expect = 1e-94 Identities = 160/245 (65%), Positives = 207/245 (84%) Frame = +2 Query: 83 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 262 M PTY DLGK+A+DVF KGYGFG++K+DL+TKS +G+EF++SG A T+T K +G+LET Sbjct: 1 MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLRTKSCSGVEFSTSGHAYTDTGKASGNLET 60 Query: 263 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 442 KY+ YGLTFT+KWNTDNTLGTEI++E++LA GLKLT D+ F PNTGKK+ K+K YKR Sbjct: 61 KYKVCNYGLTFTQKWNTDNTLGTEISLENKLAEGLKLTLDTIFVPNTGKKSGKLKASYKR 120 Query: 443 EHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 622 + ++G +VD D +GP+I G VL +EGWLAGYQM+F+TAK +++Q+NFA+GYK +FQL Sbjct: 121 DCFSVGSNVDIDFSGPTIYGWAVLAFEGWLAGYQMSFDTAKFKLSQNNFALGYKAADFQL 180 Query: 623 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 802 HT+VNDGTEFGGSIYQKVN+K+ET++NLAWTAG++NT FGIAAKY++D SAKVNN+ Sbjct: 181 HTHVNDGTEFGGSIYQKVNEKIETSINLAWTAGSNNTHFGIAAKYKLDCRTSLSAKVNNA 240 Query: 803 SLIGL 817 SLIGL Sbjct: 241 SLIGL 245 >ref|XP_855226.1| PREDICTED: similar to Voltage-dependent anion-selective channel protein 3 (VDAC-3) (hVDAC3) (Outer mitochondrial membrane protein porin 3) [Canis familiaris]. Length = 368 Score = 302 bits (774), Expect = 3e-82 Identities = 152/277 (54%), Positives = 201/277 (72%) Frame = +2 Query: 98 TYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLETKYRWT 277 TY DLGK+A+DVF +GYGF ++K DL+TKS + +E ++S A T+T K +G+LETKY+ Sbjct: 44 TYRDLGKTAKDVFNEGYGFRVVKRDLRTKSCSRVELSTSSHAYTDTGKASGNLETKYKVC 103 Query: 278 EYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHVNL 457 Y LTFT+KWNTDNT T+I++E++LA LK T D+ F PNTGKK+ K+K YKR+ +L Sbjct: 104 NYRLTFTQKWNTDNTPATKISLENKLAEELKQTLDTIFVPNTGKKSGKLKASYKRDCFSL 163 Query: 458 GCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQLHTNVN 637 G +V D +G SI G VL +EGWLAGYQM+F+TAKS+++Q+NFA+GYK +FQLHT+VN Sbjct: 164 GSNVGRDFSGSSIYGWAVLAFEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQLHTHVN 223 Query: 638 DGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNSSLIGL 817 D TEFG ++NT FGIAAKY +D SA+VNN+SLI L Sbjct: 224 DDTEFG-------------------RPSSNNTHFGIAAKYMLDCRTSLSAEVNNASLIRL 264 Query: 818 GYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQ 928 GYT TL+PG+KLTLSAL++ KN +AGGHK+GLG E + Sbjct: 265 GYTPTLRPGVKLTLSALINRKNFSAGGHKVGLGFELE 301 >ref|XP_864350.1| PREDICTED: similar to voltage-dependent anion channel 2 isoform 3 [Canis familiaris]. Length = 104 Score = 155 bits (393), Expect = 5e-38 Identities = 69/91 (75%), Positives = 85/91 (93%) Frame = +2 Query: 83 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 262 M VPP+YADLGK+ARD+F KG+GFGL+KLD+KTKS +G+EF++SGS+NT+T KVTG+LET Sbjct: 12 MCVPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLET 71 Query: 263 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQL 355 KY+W EYGLTFTEKWNTDNTLGTEI +EDQ+ Sbjct: 72 KYKWCEYGLTFTEKWNTDNTLGTEIAIEDQV 102 Database: RefSeq49_CP.fasta Posted date: Oct 17, 2011 1:42 PM Number of letters in database: 18,874,504 Number of sequences in database: 33,336 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33336 Number of Hits to DB: 42,760,286 Number of extensions: 1072306 Number of successful extensions: 3224 Number of sequences better than 1.0e-05: 11 Number of HSP's gapped: 3216 Number of HSP's successfully gapped: 11 Length of query: 376 Length of database: 18,874,504 Length adjustment: 104 Effective length of query: 272 Effective length of database: 15,407,560 Effective search space: 4190856320 Effective search space used: 4190856320 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012596
         (1129 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_999125.1| voltage-dependent anion-selective channel prote...   573   e-164
Alignment   gi|NP_999534.1| voltage-dependent anion-selective channel prote...   461   e-130
Alignment   gi|XP_003134279.2| PREDICTED: voltage-dependent anion-selective...   412   e-115
Alignment   gi|NP_999529.1| voltage-dependent anion-selective channel prote...   410   e-115
Alignment   gi|XP_003361001.1| PREDICTED: voltage-dependent anion-selective...   408   e-114

>ref|NP_999125.1| voltage-dependent anion-selective channel protein 1 [Sus scrofa].
          Length = 283

 Score =  573 bits (1478), Expect = e-164
 Identities = 283/283 (100%), Positives = 283/283 (100%)
 Frame = +2

Query: 83  MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 262
           MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET
Sbjct: 1   MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 60

Query: 263 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 442
           KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR
Sbjct: 61  KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 120

Query: 443 EHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 622
           EHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL
Sbjct: 121 EHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 180

Query: 623 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 802
           HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS
Sbjct: 181 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 240

Query: 803 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 931
           SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA
Sbjct: 241 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 283


>ref|NP_999534.1| voltage-dependent anion-selective channel protein 2 [Sus scrofa].
          Length = 294

 Score =  461 bits (1186), Expect = e-130
 Identities = 213/283 (75%), Positives = 258/283 (91%)
 Frame = +2

Query: 83  MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 262
           M +PP+YADLGK+ARD+F KG+GFGL+KLD+KTKS +G+EF++SGS+NT+T KVTG+LET
Sbjct: 12  MCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLET 71

Query: 263 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 442
           KY+W EYGLTFTEKWNTDNTLGTEI +EDQ+ +GLKLTFD++FSPNTGKK+ KIK+ YKR
Sbjct: 72  KYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGKKSGKIKSSYKR 131

Query: 443 EHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 622
           E VNLGCDVDFD AGP+I G+ V GYEGWLAGYQM F++AKS++T++NFAVGY+T +FQL
Sbjct: 132 ECVNLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQL 191

Query: 623 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 802
           HTNVNDGTEFGGSIYQKV + L+T+VNLAWT+G + TRFGIAAKYQ+DP A  SAKVNNS
Sbjct: 192 HTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNS 251

Query: 803 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 931
           SLIG+GYTQTL+PG+KLTLSAL+DGK++NAGGHKLGL LE +A
Sbjct: 252 SLIGVGYTQTLRPGVKLTLSALVDGKSINAGGHKLGLALELEA 294


>ref|XP_003134279.2| PREDICTED: voltage-dependent anion-selective channel protein 3-like
           isoform 1 [Sus scrofa].
          Length = 283

 Score =  412 bits (1059), Expect = e-115
 Identities = 193/283 (68%), Positives = 244/283 (86%)
 Frame = +2

Query: 83  MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 262
           M   PTY DLGK+A+DVF KGYGFG++K+DL+TKS +G+EF++SG A T+T K +G+LET
Sbjct: 1   MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLRTKSCSGVEFSTSGHAYTDTGKASGNLET 60

Query: 263 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 442
           KY+  +YGLTFT+KWNTDNTLGTEI++E++LA GLKLT D+ F PNTGKK+ K+K  YKR
Sbjct: 61  KYKICDYGLTFTQKWNTDNTLGTEISLENKLAEGLKLTLDTIFVPNTGKKSGKLKASYKR 120

Query: 443 EHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 622
           E  ++G +VD D AGP+I G  VL  EGWLAGYQM+F+TAKS+++Q+NFA+GYK  +FQL
Sbjct: 121 ECFSIGSNVDIDFAGPTIYGWAVLALEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQL 180

Query: 623 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 802
           HT+VNDGTEFGGSIYQKVN+K+ET++NLAWTAG++NTRFGIAAKY++D     SAKVNN+
Sbjct: 181 HTHVNDGTEFGGSIYQKVNEKIETSINLAWTAGSNNTRFGIAAKYKLDCRTSLSAKVNNA 240

Query: 803 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 931
           SLIGLGYTQTL+PG+KLTLSAL+DGKN +AGGHK+GLG E +A
Sbjct: 241 SLIGLGYTQTLRPGVKLTLSALIDGKNFSAGGHKVGLGFELEA 283


>ref|NP_999529.1| voltage-dependent anion-selective channel protein 3 [Sus scrofa].
          Length = 283

 Score =  410 bits (1054), Expect = e-115
 Identities = 192/283 (67%), Positives = 244/283 (86%)
 Frame = +2

Query: 83  MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 262
           M   PTY DLGK+A+DVF KGYGFG++K+DL+TKS +G+EF++SG A T+T K +G+LET
Sbjct: 1   MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLRTKSCSGVEFSTSGHAYTDTGKASGNLET 60

Query: 263 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 442
           KY+  ++GLTFT+KWNTDNTLGTEI++E++LA GLKLT D+ F PNTGKK+ K+K  YKR
Sbjct: 61  KYKICDHGLTFTQKWNTDNTLGTEISLENKLAEGLKLTLDTIFVPNTGKKSGKLKASYKR 120

Query: 443 EHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 622
           E  ++G +VD D AGP+I G  VL  EGWLAGYQM+F+TAKS+++Q+NFA+GYK  +FQL
Sbjct: 121 ECFSIGSNVDIDFAGPTIYGWAVLALEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQL 180

Query: 623 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 802
           HT+VNDGTEFGGSIYQKVN+K+ET++NLAWTAG++NTRFGIAAKY++D     SAKVNN+
Sbjct: 181 HTHVNDGTEFGGSIYQKVNEKIETSINLAWTAGSNNTRFGIAAKYKLDCRTSLSAKVNNA 240

Query: 803 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 931
           SLIGLGYTQTL+PG+KLTLSAL+DGKN +AGGHK+GLG E +A
Sbjct: 241 SLIGLGYTQTLRPGVKLTLSALIDGKNFSAGGHKVGLGFELEA 283


>ref|XP_003361001.1| PREDICTED: voltage-dependent anion-selective channel protein 3-like
           isoform 2 [Sus scrofa].
          Length = 284

 Score =  408 bits (1048), Expect = e-114
 Identities = 193/284 (67%), Positives = 244/284 (85%), Gaps = 1/284 (0%)
 Frame = +2

Query: 83  MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENG-LEFTSSGSANTETTKVTGSLE 259
           M   PTY DLGK+A+DVF KGYGFG++K+DL+TKS +G +EF++SG A T+T K +G+LE
Sbjct: 1   MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLRTKSCSGVMEFSTSGHAYTDTGKASGNLE 60

Query: 260 TKYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYK 439
           TKY+  +YGLTFT+KWNTDNTLGTEI++E++LA GLKLT D+ F PNTGKK+ K+K  YK
Sbjct: 61  TKYKICDYGLTFTQKWNTDNTLGTEISLENKLAEGLKLTLDTIFVPNTGKKSGKLKASYK 120

Query: 440 REHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQ 619
           RE  ++G +VD D AGP+I G  VL  EGWLAGYQM+F+TAKS+++Q+NFA+GYK  +FQ
Sbjct: 121 RECFSIGSNVDIDFAGPTIYGWAVLALEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQ 180

Query: 620 LHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNN 799
           LHT+VNDGTEFGGSIYQKVN+K+ET++NLAWTAG++NTRFGIAAKY++D     SAKVNN
Sbjct: 181 LHTHVNDGTEFGGSIYQKVNEKIETSINLAWTAGSNNTRFGIAAKYKLDCRTSLSAKVNN 240

Query: 800 SSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 931
           +SLIGLGYTQTL+PG+KLTLSAL+DGKN +AGGHK+GLG E +A
Sbjct: 241 ASLIGLGYTQTLRPGVKLTLSALIDGKNFSAGGHKVGLGFELEA 284


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,286,414
Number of extensions: 661987
Number of successful extensions: 1961
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1958
Number of HSP's successfully gapped: 5
Length of query: 376
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 275
Effective length of database: 8,829,335
Effective search space: 2428067125
Effective search space used: 2428067125
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012596
         (1129 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_035824.1| voltage-dependent anion-selective channel prote...   570   e-163
Alignment   gi|NP_035825.1| voltage-dependent anion-selective channel prote...   454   e-128
Alignment   gi|NP_035826.1| voltage-dependent anion-selective channel prote...   410   e-115
Alignment   gi|NP_001185927.1| voltage-dependent anion-selective channel pr...   406   e-113

>ref|NP_035824.1| voltage-dependent anion-selective channel protein 1 [Mus musculus].
          Length = 283

 Score =  570 bits (1468), Expect = e-163
 Identities = 279/283 (98%), Positives = 282/283 (99%)
 Frame = +2

Query: 83  MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 262
           MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKV GSLET
Sbjct: 1   MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVNGSLET 60

Query: 263 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 442
           KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR
Sbjct: 61  KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 120

Query: 443 EHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 622
           EH+NLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFET+KSRVTQSNFAVGYKTDEFQL
Sbjct: 121 EHINLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETSKSRVTQSNFAVGYKTDEFQL 180

Query: 623 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 802
           HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQ+DPDACFSAKVNNS
Sbjct: 181 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQVDPDACFSAKVNNS 240

Query: 803 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 931
           SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA
Sbjct: 241 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 283


>ref|NP_035825.1| voltage-dependent anion-selective channel protein 2 [Mus musculus].
          Length = 295

 Score =  454 bits (1169), Expect = e-128
 Identities = 210/283 (74%), Positives = 255/283 (90%)
 Frame = +2

Query: 83  MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 262
           M +PP YADLGK+ARD+F KG+GFGL+KLD+KTKS +G+EF++SGS+NT+T KV+G+LET
Sbjct: 13  MCIPPPYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVSGTLET 72

Query: 263 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 442
           KY+W EYGLTFTEKWNTDNTLGTEI +EDQ+ +GLKLTFD++FSPNTGKK+ KIK+ YKR
Sbjct: 73  KYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGKKSGKIKSAYKR 132

Query: 443 EHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 622
           E +NLGCDVDFD AGP+I G+ V GYEGWLAGYQM F++AKS++T+SNFAVGY+T +FQL
Sbjct: 133 ECINLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRSNFAVGYRTGDFQL 192

Query: 623 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 802
           HTNVN+GTEFGGSIYQKV +  +T+VNLAWT+G + TRFGIAAKYQ+DP A  SAKVNNS
Sbjct: 193 HTNVNNGTEFGGSIYQKVCEDFDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNS 252

Query: 803 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 931
           SLIG+GYTQTL+PG+KLTLSAL+DGK+ NAGGHKLGL LE +A
Sbjct: 253 SLIGVGYTQTLRPGVKLTLSALVDGKSFNAGGHKLGLALELEA 295


>ref|NP_035826.1| voltage-dependent anion-selective channel protein 3 isoform 2 [Mus
           musculus].
          Length = 283

 Score =  410 bits (1055), Expect = e-115
 Identities = 192/283 (67%), Positives = 243/283 (85%)
 Frame = +2

Query: 83  MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 262
           M   PTY DLGK+A+DVF KGYGFG++K+DLKTKS +G+EF++SG A T+T K +G+LET
Sbjct: 1   MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLKTKSCSGVEFSTSGHAYTDTGKASGNLET 60

Query: 263 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 442
           KY+   YGLTFT+KWNTDNTLGTEI+ E++LA GLKLT D+ F PNTGKK+ K+K  Y+R
Sbjct: 61  KYKVCNYGLTFTQKWNTDNTLGTEISWENKLAEGLKLTLDTIFVPNTGKKSGKLKASYRR 120

Query: 443 EHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 622
           +  +LG +VD D +GP+I G  VL +EGWLAGYQM+F+TAKS+++Q+NFA+GYK  +FQL
Sbjct: 121 DCFSLGSNVDIDFSGPTIYGWAVLAFEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQL 180

Query: 623 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 802
           HT+VNDGTEFGGSIYQKVN+++ET++NLAWTAG++NTRFGIAAKY++D     SAKVNN+
Sbjct: 181 HTHVNDGTEFGGSIYQKVNERIETSINLAWTAGSNNTRFGIAAKYKLDCRTSLSAKVNNA 240

Query: 803 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 931
           SLIGLGYTQTL+PG+KLTLSAL+DGKN NAGGHK+GLG E +A
Sbjct: 241 SLIGLGYTQTLRPGVKLTLSALIDGKNFNAGGHKVGLGFELEA 283


>ref|NP_001185927.1| voltage-dependent anion-selective channel protein 3 isoform 1 [Mus
           musculus].
          Length = 284

 Score =  406 bits (1044), Expect = e-113
 Identities = 192/284 (67%), Positives = 243/284 (85%), Gaps = 1/284 (0%)
 Frame = +2

Query: 83  MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENG-LEFTSSGSANTETTKVTGSLE 259
           M   PTY DLGK+A+DVF KGYGFG++K+DLKTKS +G +EF++SG A T+T K +G+LE
Sbjct: 1   MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLKTKSCSGVMEFSTSGHAYTDTGKASGNLE 60

Query: 260 TKYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYK 439
           TKY+   YGLTFT+KWNTDNTLGTEI+ E++LA GLKLT D+ F PNTGKK+ K+K  Y+
Sbjct: 61  TKYKVCNYGLTFTQKWNTDNTLGTEISWENKLAEGLKLTLDTIFVPNTGKKSGKLKASYR 120

Query: 440 REHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQ 619
           R+  +LG +VD D +GP+I G  VL +EGWLAGYQM+F+TAKS+++Q+NFA+GYK  +FQ
Sbjct: 121 RDCFSLGSNVDIDFSGPTIYGWAVLAFEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQ 180

Query: 620 LHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNN 799
           LHT+VNDGTEFGGSIYQKVN+++ET++NLAWTAG++NTRFGIAAKY++D     SAKVNN
Sbjct: 181 LHTHVNDGTEFGGSIYQKVNERIETSINLAWTAGSNNTRFGIAAKYKLDCRTSLSAKVNN 240

Query: 800 SSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 931
           +SLIGLGYTQTL+PG+KLTLSAL+DGKN NAGGHK+GLG E +A
Sbjct: 241 ASLIGLGYTQTLRPGVKLTLSALIDGKNFNAGGHKVGLGFELEA 284


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,755,393
Number of extensions: 894579
Number of successful extensions: 2622
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2616
Number of HSP's successfully gapped: 4
Length of query: 376
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 273
Effective length of database: 12,523,851
Effective search space: 3419011323
Effective search space used: 3419011323
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012596
         (1129 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_003365.1| voltage-dependent anion-selective channel prote...   572   e-163
Alignment   gi|NP_001171752.1| voltage-dependent anion-selective channel pr...   459   e-129
Alignment   gi|NP_001171712.1| voltage-dependent anion-selective channel pr...   459   e-129
Alignment   gi|NP_003366.2| voltage-dependent anion-selective channel prote...   459   e-129
Alignment   gi|NP_005653.3| voltage-dependent anion-selective channel prote...   409   e-114
Alignment   gi|NP_001129166.1| voltage-dependent anion-selective channel pr...   405   e-113

>ref|NP_003365.1| voltage-dependent anion-selective channel protein 1 [Homo sapiens].
          Length = 283

 Score =  572 bits (1474), Expect = e-163
 Identities = 281/283 (99%), Positives = 283/283 (100%)
 Frame = +2

Query: 83  MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 262
           MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET
Sbjct: 1   MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 60

Query: 263 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 442
           KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR
Sbjct: 61  KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 120

Query: 443 EHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 622
           EH+NLGCD+DFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL
Sbjct: 121 EHINLGCDMDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 180

Query: 623 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 802
           HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS
Sbjct: 181 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 240

Query: 803 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 931
           SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA
Sbjct: 241 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 283


>ref|NP_001171752.1| voltage-dependent anion-selective channel protein 2 isoform 2 [Homo
           sapiens].
          Length = 294

 Score =  459 bits (1182), Expect = e-129
 Identities = 211/283 (74%), Positives = 258/283 (91%)
 Frame = +2

Query: 83  MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 262
           M +PP+YADLGK+ARD+F KG+GFGL+KLD+KTKS +G+EF++SGS+NT+T KVTG+LET
Sbjct: 12  MCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLET 71

Query: 263 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 442
           KY+W EYGLTFTEKWNTDNTLGTEI +EDQ+ +GLKLTFD++FSPNTGKK+ KIK+ YKR
Sbjct: 72  KYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGKKSGKIKSSYKR 131

Query: 443 EHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 622
           E +NLGCDVDFD AGP+I G+ V GYEGWLAGYQM F++AKS++T++NFAVGY+T +FQL
Sbjct: 132 ECINLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQL 191

Query: 623 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 802
           HTNVNDGTEFGGSIYQKV + L+T+VNLAWT+G + TRFGIAAKYQ+DP A  SAKVNNS
Sbjct: 192 HTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNS 251

Query: 803 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 931
           SLIG+GYTQTL+PG+KLTLSAL+DGK++NAGGHK+GL LE +A
Sbjct: 252 SLIGVGYTQTLRPGVKLTLSALVDGKSINAGGHKVGLALELEA 294


>ref|NP_001171712.1| voltage-dependent anion-selective channel protein 2 isoform 1 [Homo
           sapiens].
          Length = 309

 Score =  459 bits (1182), Expect = e-129
 Identities = 211/283 (74%), Positives = 258/283 (91%)
 Frame = +2

Query: 83  MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 262
           M +PP+YADLGK+ARD+F KG+GFGL+KLD+KTKS +G+EF++SGS+NT+T KVTG+LET
Sbjct: 27  MCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLET 86

Query: 263 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 442
           KY+W EYGLTFTEKWNTDNTLGTEI +EDQ+ +GLKLTFD++FSPNTGKK+ KIK+ YKR
Sbjct: 87  KYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGKKSGKIKSSYKR 146

Query: 443 EHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 622
           E +NLGCDVDFD AGP+I G+ V GYEGWLAGYQM F++AKS++T++NFAVGY+T +FQL
Sbjct: 147 ECINLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQL 206

Query: 623 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 802
           HTNVNDGTEFGGSIYQKV + L+T+VNLAWT+G + TRFGIAAKYQ+DP A  SAKVNNS
Sbjct: 207 HTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNS 266

Query: 803 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 931
           SLIG+GYTQTL+PG+KLTLSAL+DGK++NAGGHK+GL LE +A
Sbjct: 267 SLIGVGYTQTLRPGVKLTLSALVDGKSINAGGHKVGLALELEA 309


>ref|NP_003366.2| voltage-dependent anion-selective channel protein 2 isoform 2 [Homo
           sapiens].
          Length = 294

 Score =  459 bits (1182), Expect = e-129
 Identities = 211/283 (74%), Positives = 258/283 (91%)
 Frame = +2

Query: 83  MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 262
           M +PP+YADLGK+ARD+F KG+GFGL+KLD+KTKS +G+EF++SGS+NT+T KVTG+LET
Sbjct: 12  MCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLET 71

Query: 263 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 442
           KY+W EYGLTFTEKWNTDNTLGTEI +EDQ+ +GLKLTFD++FSPNTGKK+ KIK+ YKR
Sbjct: 72  KYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGKKSGKIKSSYKR 131

Query: 443 EHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 622
           E +NLGCDVDFD AGP+I G+ V GYEGWLAGYQM F++AKS++T++NFAVGY+T +FQL
Sbjct: 132 ECINLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQL 191

Query: 623 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 802
           HTNVNDGTEFGGSIYQKV + L+T+VNLAWT+G + TRFGIAAKYQ+DP A  SAKVNNS
Sbjct: 192 HTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNS 251

Query: 803 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 931
           SLIG+GYTQTL+PG+KLTLSAL+DGK++NAGGHK+GL LE +A
Sbjct: 252 SLIGVGYTQTLRPGVKLTLSALVDGKSINAGGHKVGLALELEA 294


>ref|NP_005653.3| voltage-dependent anion-selective channel protein 3 isoform b [Homo
           sapiens].
          Length = 283

 Score =  409 bits (1052), Expect = e-114
 Identities = 192/283 (67%), Positives = 242/283 (85%)
 Frame = +2

Query: 83  MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 262
           M   PTY DLGK+A+DVF KGYGFG++K+DLKTKS +G+EF++SG A T+T K +G+LET
Sbjct: 1   MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLKTKSCSGVEFSTSGHAYTDTGKASGNLET 60

Query: 263 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 442
           KY+   YGLTFT+KWNTDNTLGTEI+ E++LA GLKLT D+ F PNTGKK+ K+K  YKR
Sbjct: 61  KYKVCNYGLTFTQKWNTDNTLGTEISWENKLAEGLKLTLDTIFVPNTGKKSGKLKASYKR 120

Query: 443 EHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 622
           +  ++G +VD D +GP+I G  VL +EGWLAGYQM+F+TAKS+++Q+NFA+GYK  +FQL
Sbjct: 121 DCFSVGSNVDIDFSGPTIYGWAVLAFEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQL 180

Query: 623 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 802
           HT+VNDGTEFGGSIYQKVN+K+ET++NLAWTAG++NTRFGIAAKY +D     SAKVNN+
Sbjct: 181 HTHVNDGTEFGGSIYQKVNEKIETSINLAWTAGSNNTRFGIAAKYMLDCRTSLSAKVNNA 240

Query: 803 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 931
           SLIGLGYTQTL+PG+KLTLSAL+DGKN +AGGHK+GLG E +A
Sbjct: 241 SLIGLGYTQTLRPGVKLTLSALIDGKNFSAGGHKVGLGFELEA 283


>ref|NP_001129166.1| voltage-dependent anion-selective channel protein 3 isoform a [Homo
           sapiens].
          Length = 284

 Score =  405 bits (1041), Expect = e-113
 Identities = 192/284 (67%), Positives = 242/284 (85%), Gaps = 1/284 (0%)
 Frame = +2

Query: 83  MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENG-LEFTSSGSANTETTKVTGSLE 259
           M   PTY DLGK+A+DVF KGYGFG++K+DLKTKS +G +EF++SG A T+T K +G+LE
Sbjct: 1   MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLKTKSCSGVMEFSTSGHAYTDTGKASGNLE 60

Query: 260 TKYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYK 439
           TKY+   YGLTFT+KWNTDNTLGTEI+ E++LA GLKLT D+ F PNTGKK+ K+K  YK
Sbjct: 61  TKYKVCNYGLTFTQKWNTDNTLGTEISWENKLAEGLKLTLDTIFVPNTGKKSGKLKASYK 120

Query: 440 REHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQ 619
           R+  ++G +VD D +GP+I G  VL +EGWLAGYQM+F+TAKS+++Q+NFA+GYK  +FQ
Sbjct: 121 RDCFSVGSNVDIDFSGPTIYGWAVLAFEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQ 180

Query: 620 LHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNN 799
           LHT+VNDGTEFGGSIYQKVN+K+ET++NLAWTAG++NTRFGIAAKY +D     SAKVNN
Sbjct: 181 LHTHVNDGTEFGGSIYQKVNEKIETSINLAWTAGSNNTRFGIAAKYMLDCRTSLSAKVNN 240

Query: 800 SSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 931
           +SLIGLGYTQTL+PG+KLTLSAL+DGKN +AGGHK+GLG E +A
Sbjct: 241 ASLIGLGYTQTLRPGVKLTLSALIDGKNFSAGGHKVGLGFELEA 284


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,022,480
Number of extensions: 1056144
Number of successful extensions: 3022
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3018
Number of HSP's successfully gapped: 6
Length of query: 376
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 272
Effective length of database: 14,868,908
Effective search space: 4044342976
Effective search space used: 4044342976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-012596
         (1129 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr05                                                        1158   0.0  
Sscrofa_Chr02                                                         476   e-131

>Sscrofa_Chr05 
||          Length = 111506441

 Score = 1158 bits (584), Expect = 0.0
 Identities = 841/923 (91%), Gaps = 6/923 (0%)
 Strand = Plus / Plus

                                                                            
Query: 163      aaaacttgatttgaaaacaaaatctgagaatggactggaatttacaagctcaggttcagc 222
                |||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 65715183 aaaaattgatttgaaaatcaaatctgagaatggactggaatttacaagctcaggttcagc 65715242

                                                                            
Query: 223      caacacggagaccaccaaagtgacgggcagtctggaaaccaagtacagatggaccgaata 282
                |||| | || || |||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 65715243 caaccctgaaacaaccagagtgatgggcagtctggaaaccaagtacagatggaccgaata 65715302

                                                                            
Query: 283      tggtctgacgtttacagagaagtggaacaccgacaacaccctgggcacggagattaccgt 342
                ||||||||||||| |||||| || ||| || ||| |||| || ||||||||||||||  |
Sbjct: 65715303 tggtctgacgtttccagagacgtagaa-actgaccacacactaggcacggagattactct 65715361

                                                                            
Query: 343      ggaagatcagcttgcccgtggactgaagctgacctttgattcatccttctcaccgaacac 402
                ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 65715362 ggaagatcagcttgcacgtggactgaagctgacctttgattcatccttctcaccaaacac 65715421

                                                                            
Query: 403      tgggnnnnnnnnt-gccaaaatcaagaccgggtataagcgggagcacgtcaacctgggct 461
                ||||          |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 65715422 tggggggaaaaaaagccaaactcaagaccgggtataagcgggagcacgtcaacctgggct 65715481

                                                                            
Query: 462      gcgacgtggatttcgacatcgctgggccgtccatccgcggtgctctcgtgctgggttatg 521
                || ||||||||||| | || || || || ||||||| ||||||||||||||||| |||||
Sbjct: 65715482 gcaacgtggatttcaatattgccggaccttccatcctcggtgctctcgtgctggcttatg 65715541

                                                                            
Query: 522      agggctggctggcgggctaccagatgaattttgagaccgccaagtcccgagtgacccaga 581
                ||||||||||||| |||||||||||||||| ||||||| |||||||| ||||||||||||
Sbjct: 65715542 agggctggctggcaggctaccagatgaattctgagaccaccaagtccggagtgacccaga 65715601

                                                                            
Query: 582      gcaactttgcagtcggctacaagaccgatgaattccagcttcacactaatgtaaatgatg 641
                |||||||||| || ||||||||||| ||||| ||||||||||||||||| ||||||||||
Sbjct: 65715602 gcaactttgctgttggctacaagactgatgagttccagcttcacactaaagtaaatgatg 65715661

                                                                            
Query: 642      ggacggagtttggtggctccatttatcagaaggtgaacaagaagttggagaccgctgtta 701
                ||||  ||||||| ||||||||||||||||||||||||||||||||||||   ||| |||
Sbjct: 65715662 ggac--agtttggcggctccatttatcagaaggtgaacaagaagttggaggtggctctta 65715719

                                                                            
Query: 702      atcttgcctggacagcaggaaacagcaacacacgctttggaatagcagccaagtaccaga 761
                |||| | ||||||||||||| ||||||||||  |||||||||||||||||||||||||||
Sbjct: 65715720 atctcgtctggacagcaggagacagcaacacgggctttggaatagcagccaagtaccaga 65715779

                                                                            
Query: 762      tcgaccctgacgcctgcttctcggctaaagtgaacaactccagcctgataggcttaggat 821
                | |||||||||||||||||||| |||||||||||||||| |||||||||||  |||||||
Sbjct: 65715780 tggaccctgacgcctgcttctcagctaaagtgaacaactgcagcctgatagaattaggat 65715839

                                                                            
Query: 822      acactcagaccctaaagccaggtatcaaactgacgctgtccgctctgctggatggcaaga 881
                |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 65715840 acactcagaccctaaagccaggtatcaaactgacgctgtcagctctgctggctggcaaga 65715899

                                                                            
Query: 882      atgtcaacgccggtggccacaagcttggtctaggactggagtttcaagcataaacgaata 941
                 |||||| || |||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 65715900 gtgtcaatgctggtggccacacgcttggtctaggactggagtttcacgcataaacgaata 65715959

                                                                            
Query: 942      ctgtacaatcgtttaattttaaactattttgcagcatagctaccttcagaatctagtgta 1001
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65715960 ctgtacaatcgtttaattttaaactattttgcagcatagctaccttcagaatctagtgta 65716019

                                                                            
Query: 1002     ccttttactgttgtacgtctggggatgcaagtattgct-aatatcctgttagacttccag 1060
                ||||||| |||||||||||| | ||||||||||||||| |||||| || |||||||||||
Sbjct: 65716020 ccttttaatgttgtacgtct-gagatgcaagtattgctaaatatcatggtagacttccag 65716078

                                       
Query: 1061     gttcaagatgattcagctttagg 1083
                | | |||||||||||||||||||
Sbjct: 65716079 ggtaaagatgattcagctttagg 65716101



 Score =  190 bits (96), Expect = 1e-45
 Identities = 117/124 (94%)
 Strand = Plus / Plus

                                                                            
Query: 53       gagcccactgccaccgcttcggagcagaagatggctgtgcctcctacgtatgccgatctt 112
                ||||||||||| ||| |||| |||||||||||||||||||||||   |||||||||||||
Sbjct: 65714779 gagcccactgctacctcttctgagcagaagatggctgtgcctcccgtgtatgccgatctt 65714838

                                                                            
Query: 113      ggcaagtctgccagggatgtcttcaccaagggctatggatttggcctaataaaacttgat 172
                ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 65714839 ggcaagtctgccagggatgtcttcaccaagggctatggatttggcttaataaaacttgat 65714898

                    
Query: 173      ttga 176
                ||||
Sbjct: 65714899 ttga 65714902


>Sscrofa_Chr02 
||          Length = 162569375

 Score =  476 bits (240), Expect = e-131
 Identities = 259/264 (98%), Gaps = 1/264 (0%)
 Strand = Plus / Minus

                                                                             
Query: 840       caggtatcaaactgacgctgtccgctctgctggatggcaagaatgtcaacgccggtggcc 899
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141877753 caggtatcaaactgacgctgtccgctctgctggatggcaagaatgtcaacgccggtggcc 141877694

                                                                             
Query: 900       acaagcttggtctaggactggagtttcaagcataaacgaatactgtacaatcgtttaatt 959
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141877693 acaagcttggtctaggactggagtttcaagcataaacgaatactgtacaatcgtttaatt 141877634

                                                                             
Query: 960       ttaaactattttgcagcatagctaccttcagaatctagtgtaccttttactgttgtacgt 1019
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141877633 ttaaactattttgcagcatagctaccttcagaatctagtgtaccttttactgttgtacgt 141877574

                                                                             
Query: 1020      ctggggatgcaagtattgct-aatatcctgttagacttccaggttcaagatgattcagct 1078
                 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 141877573 ctggggatgcaagtattgctaaatatcctgttagacttccaggttcaagatgattcagct 141877514

                                         
Query: 1079      ttaggaatgtaccctttcaaaggt 1102
                 ||||||   |||||||||| ||||
Sbjct: 141877513 ttaggatgttaccctttcagaggt 141877490



 Score =  434 bits (219), Expect = e-119
 Identities = 219/219 (100%)
 Strand = Plus / Minus

                                                                             
Query: 415       tgccaaaatcaagaccgggtataagcgggagcacgtcaacctgggctgcgacgtggattt 474
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141886048 tgccaaaatcaagaccgggtataagcgggagcacgtcaacctgggctgcgacgtggattt 141885989

                                                                             
Query: 475       cgacatcgctgggccgtccatccgcggtgctctcgtgctgggttatgagggctggctggc 534
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141885988 cgacatcgctgggccgtccatccgcggtgctctcgtgctgggttatgagggctggctggc 141885929

                                                                             
Query: 535       gggctaccagatgaattttgagaccgccaagtcccgagtgacccagagcaactttgcagt 594
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141885928 gggctaccagatgaattttgagaccgccaagtcccgagtgacccagagcaactttgcagt 141885869

                                                        
Query: 595       cggctacaagaccgatgaattccagcttcacactaatgt 633
                 |||||||||||||||||||||||||||||||||||||||
Sbjct: 141885868 cggctacaagaccgatgaattccagcttcacactaatgt 141885830



 Score =  305 bits (154), Expect = 3e-80
 Identities = 154/154 (100%)
 Strand = Plus / Minus

                                                                             
Query: 199       ggaatttacaagctcaggttcagccaacacggagaccaccaaagtgacgggcagtctgga 258
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141893460 ggaatttacaagctcaggttcagccaacacggagaccaccaaagtgacgggcagtctgga 141893401

                                                                             
Query: 259       aaccaagtacagatggaccgaatatggtctgacgtttacagagaagtggaacaccgacaa 318
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141893400 aaccaagtacagatggaccgaatatggtctgacgtttacagagaagtggaacaccgacaa 141893341

                                                   
Query: 319       caccctgggcacggagattaccgtggaagatcag 352
                 ||||||||||||||||||||||||||||||||||
Sbjct: 141893340 caccctgggcacggagattaccgtggaagatcag 141893307



 Score =  301 bits (152), Expect = 4e-79
 Identities = 152/152 (100%)
 Strand = Plus / Minus

                                                                             
Query: 634       aaatgatgggacggagtttggtggctccatttatcagaaggtgaacaagaagttggagac 693
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141881314 aaatgatgggacggagtttggtggctccatttatcagaaggtgaacaagaagttggagac 141881255

                                                                             
Query: 694       cgctgttaatcttgcctggacagcaggaaacagcaacacacgctttggaatagcagccaa 753
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141881254 cgctgttaatcttgcctggacagcaggaaacagcaacacacgctttggaatagcagccaa 141881195

                                                 
Query: 754       gtaccagatcgaccctgacgcctgcttctcgg 785
                 ||||||||||||||||||||||||||||||||
Sbjct: 141881194 gtaccagatcgaccctgacgcctgcttctcgg 141881163



 Score =  151 bits (76), Expect = 1e-33
 Identities = 76/76 (100%)
 Strand = Plus / Minus

                                                                             
Query: 75        agcagaagatggctgtgcctcctacgtatgccgatcttggcaagtctgccagggatgtct 134
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141895224 agcagaagatggctgtgcctcctacgtatgccgatcttggcaagtctgccagggatgtct 141895165

                                 
Query: 135       tcaccaagggctatgg 150
                 ||||||||||||||||
Sbjct: 141895164 tcaccaagggctatgg 141895149



 Score =  149 bits (75), Expect = 4e-33
 Identities = 75/75 (100%)
 Strand = Plus / Minus

                                                                             
Query: 2         cccgccactggctcggttgctcacgctgcagcccccgccgtagtcgccgcggagcccact 61
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141909024 cccgccactggctcggttgctcacgctgcagcccccgccgtagtcgccgcggagcccact 141908965

                                
Query: 62        gccaccgcttcggag 76
                 |||||||||||||||
Sbjct: 141908964 gccaccgcttcggag 141908950



 Score =  125 bits (63), Expect = 6e-26
 Identities = 63/63 (100%)
 Strand = Plus / Minus

                                                                             
Query: 784       ggctaaagtgaacaactccagcctgataggcttaggatacactcagaccctaaagccagg 843
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141878414 ggctaaagtgaacaactccagcctgataggcttaggatacactcagaccctaaagccagg 141878355

                    
Query: 844       tat 846
                 |||
Sbjct: 141878354 tat 141878352



 Score =  115 bits (58), Expect = 5e-23
 Identities = 58/58 (100%)
 Strand = Plus / Minus

                                                                           
Query: 349       tcagcttgcccgtggactgaagctgacctttgattcatccttctcaccgaacactggg 406
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141893222 tcagcttgcccgtggactgaagctgacctttgattcatccttctcaccgaacactggg 141893165



 Score =  103 bits (52), Expect = 2e-19
 Identities = 52/52 (100%)
 Strand = Plus / Minus

                                                                     
Query: 149       ggatttggcctaataaaacttgatttgaaaacaaaatctgagaatggactgg 200
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141894623 ggatttggcctaataaaacttgatttgaaaacaaaatctgagaatggactgg 141894572


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,684,974
Number of extensions: 137
Number of successful extensions: 137
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 12
Length of query: 1129
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1108
Effective length of database: 2,808,413,156
Effective search space: 3111721776848
Effective search space used: 3111721776848
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)