Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012598
(1486 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531907.1| PREDICTED: similar to Voltage-dependent anion-s... 573 e-163
Alignment gi|XP_536597.1| PREDICTED: similar to Voltage-dependent anion-s... 487 e-137
Alignment gi|XP_536398.2| PREDICTED: similar to voltage-dependent anion c... 461 e-130
Alignment gi|XP_851742.1| PREDICTED: similar to voltage-dependent anion c... 461 e-130
Alignment gi|XP_848519.1| PREDICTED: similar to Voltage-dependent anion-s... 408 e-114
Alignment gi|XP_532686.2| PREDICTED: similar to Voltage-dependent anion-s... 408 e-114
Alignment gi|XP_856263.1| PREDICTED: similar to Voltage-dependent anion-s... 343 2e-94
Alignment gi|XP_867456.1| PREDICTED: similar to Voltage-dependent anion-s... 343 2e-94
Alignment gi|XP_855226.1| PREDICTED: similar to Voltage-dependent anion-s... 302 5e-82
Alignment gi|XP_864350.1| PREDICTED: similar to voltage-dependent anion c... 155 7e-38
>ref|XP_531907.1| PREDICTED: similar to Voltage-dependent anion-selective channel
protein 1 (VDAC-1) (hVDAC1) (Outer mitochondrial
membrane protein porin 1) (Plasmalemmal porin) (Porin
31HL) (Porin 31HM) [Canis familiaris].
Length = 283
Score = 573 bits (1477), Expect = e-163
Identities = 282/283 (99%), Positives = 283/283 (100%)
Frame = +2
Query: 71 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 250
MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET
Sbjct: 1 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 60
Query: 251 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 430
KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR
Sbjct: 61 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 120
Query: 431 EHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 610
EH+NLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL
Sbjct: 121 EHINLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 180
Query: 611 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 790
HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS
Sbjct: 181 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 240
Query: 791 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 919
SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA
Sbjct: 241 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 283
>ref|XP_536597.1| PREDICTED: similar to Voltage-dependent anion-selective channel
protein 1 (VDAC-1) (hVDAC1) (Outer mitochondrial
membrane protein porin 1) (Plasmalemmal porin) (Porin
31HL) (Porin 31HM) [Canis familiaris].
Length = 256
Score = 487 bits (1254), Expect = e-137
Identities = 239/250 (95%), Positives = 243/250 (97%)
Frame = +2
Query: 71 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 250
M VPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTS GSANTETTKVTGSLET
Sbjct: 1 MPVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSWGSANTETTKVTGSLET 60
Query: 251 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 430
KYRWTEYGLTFTEK +TDNTLGTEITVEDQLARGLKLTFDSSFSPNTG KNAKIKTGYKR
Sbjct: 61 KYRWTEYGLTFTEKRDTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGGKNAKIKTGYKR 120
Query: 431 EHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 610
EH+NLGCD+DFDIAGPSIRGALVLGYEGWLAGYQ+NFETAKSRVTQSNF VGYKTDEFQL
Sbjct: 121 EHINLGCDMDFDIAGPSIRGALVLGYEGWLAGYQVNFETAKSRVTQSNFVVGYKTDEFQL 180
Query: 611 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 790
HTNVNDGTEFGGSIYQKVNKKLET VNLAWTAGNSNTRFGI AKYQIDPDACFSAKVNNS
Sbjct: 181 HTNVNDGTEFGGSIYQKVNKKLETTVNLAWTAGNSNTRFGIVAKYQIDPDACFSAKVNNS 240
Query: 791 SLIGLGYTQT 820
SLIGLGYTQT
Sbjct: 241 SLIGLGYTQT 250
>ref|XP_536398.2| PREDICTED: similar to voltage-dependent anion channel 2 isoform 1
[Canis familiaris].
Length = 294
Score = 461 bits (1186), Expect = e-130
Identities = 213/283 (75%), Positives = 258/283 (91%)
Frame = +2
Query: 71 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 250
M VPP+YADLGK+ARD+F KG+GFGL+KLD+KTKS +G+EF++SGS+NT+T KVTG+LET
Sbjct: 12 MCVPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLET 71
Query: 251 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 430
KY+W EYGLTFTEKWNTDNTLGTEI +EDQ+ +GLKLTFD++FSPNTGKK+ KIK+ YKR
Sbjct: 72 KYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGKKSGKIKSSYKR 131
Query: 431 EHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 610
E +NLGCDVDFD AGP+I G+ V GYEGWLAGYQM F++AKS++T++NFAVGY+T +FQL
Sbjct: 132 ECINLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQL 191
Query: 611 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 790
HTNVNDGTEFGGSIYQKV + L+T+VNLAWT+G + TRFGIAAKYQ+DP A SAKVNNS
Sbjct: 192 HTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNS 251
Query: 791 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 919
SLIG+GYTQTL+PG+KLTLSAL+DGK++NAGGHKLGL LE +A
Sbjct: 252 SLIGVGYTQTLRPGVKLTLSALVDGKSINAGGHKLGLALELEA 294
>ref|XP_851742.1| PREDICTED: similar to voltage-dependent anion channel 2 isoform 2
[Canis familiaris].
Length = 294
Score = 461 bits (1186), Expect = e-130
Identities = 213/283 (75%), Positives = 258/283 (91%)
Frame = +2
Query: 71 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 250
M VPP+YADLGK+ARD+F KG+GFGL+KLD+KTKS +G+EF++SGS+NT+T KVTG+LET
Sbjct: 12 MCVPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLET 71
Query: 251 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 430
KY+W EYGLTFTEKWNTDNTLGTEI +EDQ+ +GLKLTFD++FSPNTGKK+ KIK+ YKR
Sbjct: 72 KYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGKKSGKIKSSYKR 131
Query: 431 EHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 610
E +NLGCDVDFD AGP+I G+ V GYEGWLAGYQM F++AKS++T++NFAVGY+T +FQL
Sbjct: 132 ECINLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQL 191
Query: 611 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 790
HTNVNDGTEFGGSIYQKV + L+T+VNLAWT+G + TRFGIAAKYQ+DP A SAKVNNS
Sbjct: 192 HTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNS 251
Query: 791 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 919
SLIG+GYTQTL+PG+KLTLSAL+DGK++NAGGHKLGL LE +A
Sbjct: 252 SLIGVGYTQTLRPGVKLTLSALVDGKSINAGGHKLGLALELEA 294
>ref|XP_848519.1| PREDICTED: similar to Voltage-dependent anion-selective channel
protein 3 (VDAC-3) (mVDAC3) (Outer mitochondrial
membrane protein porin 3) isoform 1 [Canis familiaris].
Length = 284
Score = 408 bits (1048), Expect = e-114
Identities = 192/284 (67%), Positives = 244/284 (85%), Gaps = 1/284 (0%)
Frame = +2
Query: 71 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENG-LEFTSSGSANTETTKVTGSLE 247
M PTY DLGK+A+DVF KGYGFG++K+DL+TKS +G +EF++SG A T+T K +G+LE
Sbjct: 1 MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLRTKSCSGVMEFSTSGHAYTDTGKASGNLE 60
Query: 248 TKYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYK 427
TKY+ YGLTFT+KWNTDNTLGTEI++E++LA GLKLT D+ F PNTGKK+ K+K YK
Sbjct: 61 TKYKVCNYGLTFTQKWNTDNTLGTEISLENKLAEGLKLTLDTIFVPNTGKKSGKLKASYK 120
Query: 428 REHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQ 607
R+ ++G +VD D +GP+I G VL +EGWLAGYQM+F+TAKS+++Q+NFA+GYK +FQ
Sbjct: 121 RDCFSVGSNVDIDFSGPTIYGWAVLAFEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQ 180
Query: 608 LHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNN 787
LHT+VNDGTEFGGSIYQKVN+K+ET++NLAWTAG++NTRFGIAAKY++D SAKVNN
Sbjct: 181 LHTHVNDGTEFGGSIYQKVNEKIETSINLAWTAGSNNTRFGIAAKYKLDCRTSLSAKVNN 240
Query: 788 SSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 919
+SLIGLGYTQTL+PG+KLTLSAL+DGKN NAGGHK+GLG E +A
Sbjct: 241 ASLIGLGYTQTLRPGVKLTLSALIDGKNFNAGGHKVGLGFELEA 284
>ref|XP_532686.2| PREDICTED: similar to Voltage-dependent anion-selective channel
protein 3 (VDAC-3) (mVDAC3) (Outer mitochondrial
membrane protein porin 3) isoform 1 [Canis familiaris].
Length = 283
Score = 408 bits (1048), Expect = e-114
Identities = 190/283 (67%), Positives = 242/283 (85%)
Frame = +2
Query: 71 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 250
M PTY DLGK+A+DVF KGYGFG++K+DL+TKS +G+EF++SG A T+T K +G+LET
Sbjct: 1 MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLRTKSCSGVEFSTSGHAYTDTGKASGNLET 60
Query: 251 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 430
KY+ YGLTFT+KWNTDNTLGTEI++E++LA GLKLT D+ F PNTGKK+ K+K YKR
Sbjct: 61 KYKVCNYGLTFTQKWNTDNTLGTEISLENKLAEGLKLTLDTIFVPNTGKKSGKLKASYKR 120
Query: 431 EHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 610
+ ++G +VD D +GP+I G VL +EGWLAGYQM+F+TAK +++Q+NFA+GYK +FQL
Sbjct: 121 DCFSVGSNVDIDFSGPTIYGWAVLAFEGWLAGYQMSFDTAKFKLSQNNFALGYKAADFQL 180
Query: 611 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 790
HT+VNDGTEFGGSIYQKVN+K+ET++NLAWTAG++NT FGIAAKY++D SAKVNN+
Sbjct: 181 HTHVNDGTEFGGSIYQKVNEKIETSINLAWTAGSNNTHFGIAAKYKLDCRTSLSAKVNNA 240
Query: 791 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 919
SLIGLGYTQTL+PG+KLTLSAL+DGKN NAGGHK+GLG E +A
Sbjct: 241 SLIGLGYTQTLRPGVKLTLSALIDGKNFNAGGHKVGLGFELEA 283
>ref|XP_856263.1| PREDICTED: similar to Voltage-dependent anion-selective channel
protein 3 (VDAC-3) (hVDAC3) (Outer mitochondrial
membrane protein porin 3) isoform 2 [Canis familiaris].
Length = 248
Score = 343 bits (881), Expect = 2e-94
Identities = 162/246 (65%), Positives = 209/246 (84%), Gaps = 1/246 (0%)
Frame = +2
Query: 71 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENG-LEFTSSGSANTETTKVTGSLE 247
M PTY DLGK+A+DVF KGYGFG++K+DL+TKS +G +EF++SG A T+T K +G+LE
Sbjct: 1 MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLRTKSCSGVMEFSTSGHAYTDTGKASGNLE 60
Query: 248 TKYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYK 427
TKY+ YGLTFT+KWNTDNTLGTEI++E++LA GLKLT D+ F PNTGKK+ K+K YK
Sbjct: 61 TKYKVCNYGLTFTQKWNTDNTLGTEISLENKLAEGLKLTLDTIFVPNTGKKSGKLKASYK 120
Query: 428 REHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQ 607
R+ ++G +VD D +GP+I G VL +EGWLAGYQM+F+TAKS+++Q+NFA+GYK +FQ
Sbjct: 121 RDCFSVGSNVDIDFSGPTIYGWAVLAFEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQ 180
Query: 608 LHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNN 787
LHT+VNDGTEFGGSIYQKVN+K+ET++NLAWTAG++NTRFGIAAKY++D SAKVNN
Sbjct: 181 LHTHVNDGTEFGGSIYQKVNEKIETSINLAWTAGSNNTRFGIAAKYKLDCRTSLSAKVNN 240
Query: 788 SSLIGL 805
+SLIGL
Sbjct: 241 ASLIGL 246
>ref|XP_867456.1| PREDICTED: similar to Voltage-dependent anion-selective channel
protein 3 (VDAC-3) (hVDAC3) (Outer mitochondrial
membrane protein porin 3) isoform 2 [Canis familiaris].
Length = 247
Score = 343 bits (881), Expect = 2e-94
Identities = 160/245 (65%), Positives = 207/245 (84%)
Frame = +2
Query: 71 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 250
M PTY DLGK+A+DVF KGYGFG++K+DL+TKS +G+EF++SG A T+T K +G+LET
Sbjct: 1 MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLRTKSCSGVEFSTSGHAYTDTGKASGNLET 60
Query: 251 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 430
KY+ YGLTFT+KWNTDNTLGTEI++E++LA GLKLT D+ F PNTGKK+ K+K YKR
Sbjct: 61 KYKVCNYGLTFTQKWNTDNTLGTEISLENKLAEGLKLTLDTIFVPNTGKKSGKLKASYKR 120
Query: 431 EHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 610
+ ++G +VD D +GP+I G VL +EGWLAGYQM+F+TAK +++Q+NFA+GYK +FQL
Sbjct: 121 DCFSVGSNVDIDFSGPTIYGWAVLAFEGWLAGYQMSFDTAKFKLSQNNFALGYKAADFQL 180
Query: 611 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 790
HT+VNDGTEFGGSIYQKVN+K+ET++NLAWTAG++NT FGIAAKY++D SAKVNN+
Sbjct: 181 HTHVNDGTEFGGSIYQKVNEKIETSINLAWTAGSNNTHFGIAAKYKLDCRTSLSAKVNNA 240
Query: 791 SLIGL 805
SLIGL
Sbjct: 241 SLIGL 245
>ref|XP_855226.1| PREDICTED: similar to Voltage-dependent anion-selective channel
protein 3 (VDAC-3) (hVDAC3) (Outer mitochondrial
membrane protein porin 3) [Canis familiaris].
Length = 368
Score = 302 bits (774), Expect = 5e-82
Identities = 152/277 (54%), Positives = 201/277 (72%)
Frame = +2
Query: 86 TYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLETKYRWT 265
TY DLGK+A+DVF +GYGF ++K DL+TKS + +E ++S A T+T K +G+LETKY+
Sbjct: 44 TYRDLGKTAKDVFNEGYGFRVVKRDLRTKSCSRVELSTSSHAYTDTGKASGNLETKYKVC 103
Query: 266 EYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHVNL 445
Y LTFT+KWNTDNT T+I++E++LA LK T D+ F PNTGKK+ K+K YKR+ +L
Sbjct: 104 NYRLTFTQKWNTDNTPATKISLENKLAEELKQTLDTIFVPNTGKKSGKLKASYKRDCFSL 163
Query: 446 GCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQLHTNVN 625
G +V D +G SI G VL +EGWLAGYQM+F+TAKS+++Q+NFA+GYK +FQLHT+VN
Sbjct: 164 GSNVGRDFSGSSIYGWAVLAFEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQLHTHVN 223
Query: 626 DGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNSSLIGL 805
D TEFG ++NT FGIAAKY +D SA+VNN+SLI L
Sbjct: 224 DDTEFG-------------------RPSSNNTHFGIAAKYMLDCRTSLSAEVNNASLIRL 264
Query: 806 GYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQ 916
GYT TL+PG+KLTLSAL++ KN +AGGHK+GLG E +
Sbjct: 265 GYTPTLRPGVKLTLSALINRKNFSAGGHKVGLGFELE 301
>ref|XP_864350.1| PREDICTED: similar to voltage-dependent anion channel 2 isoform 3
[Canis familiaris].
Length = 104
Score = 155 bits (393), Expect = 7e-38
Identities = 69/91 (75%), Positives = 85/91 (93%)
Frame = +2
Query: 71 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 250
M VPP+YADLGK+ARD+F KG+GFGL+KLD+KTKS +G+EF++SGS+NT+T KVTG+LET
Sbjct: 12 MCVPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLET 71
Query: 251 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQL 343
KY+W EYGLTFTEKWNTDNTLGTEI +EDQ+
Sbjct: 72 KYKWCEYGLTFTEKWNTDNTLGTEIAIEDQV 102
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 60,656,796
Number of extensions: 1608451
Number of successful extensions: 5399
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 5379
Number of HSP's successfully gapped: 11
Length of query: 495
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 388
Effective length of database: 15,307,552
Effective search space: 5939330176
Effective search space used: 5939330176
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012598
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012598
(1486 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776910.2| voltage-dependent anion-selective channel prote... 570 e-162
Alignment gi|NP_776911.2| voltage-dependent anion-selective channel prote... 461 e-129
Alignment gi|XP_001252363.1| PREDICTED: voltage-dependent anion-selective... 456 e-128
Alignment gi|XP_002687714.1| PREDICTED: voltage-dependent anion-selective... 454 e-128
Alignment gi|NP_777154.1| voltage-dependent anion-selective channel prote... 412 e-115
Alignment gi|XP_001788121.1| PREDICTED: voltage-dependent anion channel 2... 288 7e-78
>ref|NP_776910.2| voltage-dependent anion-selective channel protein 1 [Bos taurus].
Length = 283
Score = 570 bits (1469), Expect = e-162
Identities = 281/283 (99%), Positives = 282/283 (99%)
Frame = +2
Query: 71 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 250
MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET
Sbjct: 1 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 60
Query: 251 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 430
KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR
Sbjct: 61 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 120
Query: 431 EHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 610
EH+NLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL
Sbjct: 121 EHINLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 180
Query: 611 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 790
HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS
Sbjct: 181 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 240
Query: 791 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 919
SLIGL YTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA
Sbjct: 241 SLIGLRYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 283
>ref|NP_776911.2| voltage-dependent anion-selective channel protein 2 [Bos taurus].
Length = 294
Score = 461 bits (1185), Expect = e-129
Identities = 212/283 (74%), Positives = 258/283 (91%)
Frame = +2
Query: 71 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 250
M +PP+YADLGK+ARD+F KG+GFGL+KLD+KTKS +G+EF++SGS+NT+T KVTG+LET
Sbjct: 12 MCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLET 71
Query: 251 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 430
KY+W EYGLTFTEKWNTDNTLGTEI +EDQ+ +GLKLTFD++FSPNTGKK+ KIK+ YKR
Sbjct: 72 KYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGKKSGKIKSSYKR 131
Query: 431 EHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 610
E +NLGCDVDFD AGP+I G+ V GYEGWLAGYQM F++AKS++T++NFAVGY+T +FQL
Sbjct: 132 ECINLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQL 191
Query: 611 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 790
HTNVNDGTEFGGSIYQKV + L+T+VNLAWT+G + TRFGIAAKYQ+DP A SAKVNNS
Sbjct: 192 HTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNS 251
Query: 791 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 919
SLIG+GYTQTL+PG+KLTLSAL+DGK++NAGGHKLGL LE +A
Sbjct: 252 SLIGVGYTQTLRPGVKLTLSALVDGKSINAGGHKLGLALELEA 294
>ref|XP_001252363.1| PREDICTED: voltage-dependent anion-selective channel protein 2-like
[Bos taurus].
Length = 294
Score = 456 bits (1172), Expect = e-128
Identities = 210/283 (74%), Positives = 257/283 (90%)
Frame = +2
Query: 71 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 250
+ +PP+YADLGK+ARD+F KG+GFGL+KLD+KTKS +G+EF++SGS+NT+T KVTG+LET
Sbjct: 12 VCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLET 71
Query: 251 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 430
KY+W EYGLTFTEKWNTDNTLGTEI ++DQ+ +GLKLTFD++FSPNTGKK+ KIK+ YKR
Sbjct: 72 KYKWCEYGLTFTEKWNTDNTLGTEIAIKDQICQGLKLTFDTTFSPNTGKKSGKIKSSYKR 131
Query: 431 EHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 610
E +NLGCDVDFD AGP+I G+ V GYEGWLAGYQM F++AKS++T++NFAVGY+T +FQL
Sbjct: 132 ECINLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQL 191
Query: 611 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 790
HTNVNDGTEFGGSIYQKV + L+T+VNLAWT+G + TRFGIAAKYQ+DP A SAKVNNS
Sbjct: 192 HTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNS 251
Query: 791 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 919
SLIG+G TQTL+PG+KLTLSAL+DGKN+NAGGHKLGL LE +A
Sbjct: 252 SLIGVGDTQTLRPGVKLTLSALVDGKNINAGGHKLGLALELEA 294
>ref|XP_002687714.1| PREDICTED: voltage-dependent anion-selective channel protein 2-like
[Bos taurus].
Length = 294
Score = 454 bits (1168), Expect = e-128
Identities = 209/283 (73%), Positives = 257/283 (90%)
Frame = +2
Query: 71 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 250
+ +PP+YADLGK+ARD+F KG+GFGL+KLD+KTKS +G+EF++SGS+NT+T KVTG+LET
Sbjct: 12 VCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLET 71
Query: 251 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 430
KY+W EYGLTFTEKWNTDNTLGTEI ++DQ+ +GLKLTFD++FSPNTGKK+ KIK+ YKR
Sbjct: 72 KYKWCEYGLTFTEKWNTDNTLGTEIAIKDQICQGLKLTFDTTFSPNTGKKSGKIKSSYKR 131
Query: 431 EHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 610
E +NLGCDVDFD AGP+I G+ V GY+GWLAGYQM F++AKS++T++NFAVGY+T +FQL
Sbjct: 132 ECINLGCDVDFDFAGPAIHGSAVFGYKGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQL 191
Query: 611 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 790
HTNVNDGTEFGGSIYQKV + L+T+VNLAWT+G + TRFGIAAKYQ+DP A SAKVNNS
Sbjct: 192 HTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNS 251
Query: 791 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 919
SLIG+G TQTL+PG+KLTLSAL+DGKN+NAGGHKLGL LE +A
Sbjct: 252 SLIGVGDTQTLRPGVKLTLSALVDGKNINAGGHKLGLALELEA 294
>ref|NP_777154.1| voltage-dependent anion-selective channel protein 3 [Bos taurus].
Length = 283
Score = 412 bits (1058), Expect = e-115
Identities = 193/283 (68%), Positives = 243/283 (85%)
Frame = +2
Query: 71 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 250
M PTY DLGK+A+DVF KGYGFG++K+DL+TKS +G+EF++SG A T+T K +G+LET
Sbjct: 1 MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLRTKSCSGVEFSTSGHAYTDTGKASGNLET 60
Query: 251 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 430
KY+ YGLTFT+KWNTDNTLGTEI+ E++LA GLKLT D+ F PNTGKK+ K+K YKR
Sbjct: 61 KYKICNYGLTFTQKWNTDNTLGTEISWENKLAEGLKLTLDTIFVPNTGKKSGKLKASYKR 120
Query: 431 EHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 610
+ +LG +VD D +GP+I G VL +EGWLAGYQM+F+TAKS+++Q+NFA+GYK +FQL
Sbjct: 121 DCFSLGSNVDIDFSGPTIYGWAVLAFEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQL 180
Query: 611 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 790
HT+VNDGTEFGGSIYQKVN+K+ET++NLAWTAG++NTRFGIAAKY++D SAKVNN+
Sbjct: 181 HTHVNDGTEFGGSIYQKVNEKIETSINLAWTAGSNNTRFGIAAKYKLDCRTSLSAKVNNA 240
Query: 791 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 919
SLIGLGYTQTL+PG+KLTLSAL+DGKN NAGGHK+GLG E +A
Sbjct: 241 SLIGLGYTQTLRPGVKLTLSALIDGKNFNAGGHKVGLGFELEA 283
>ref|XP_001788121.1| PREDICTED: voltage-dependent anion channel 2-like, partial [Bos
taurus].
Length = 179
Score = 288 bits (738), Expect = 7e-78
Identities = 135/179 (75%), Positives = 160/179 (89%)
Frame = +2
Query: 383 PNTGKKNAKIKTGYKREHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRV 562
PNTGKK+ KIK+ YKRE +NLGCDVDFD AGP+I G+ V GYEGWLAGYQM F++AKS++
Sbjct: 1 PNTGKKSGKIKSSYKRECINLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKL 60
Query: 563 TQSNFAVGYKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAK 742
T++NFAVGY+T +FQLHTNVNDGTEFGGSIYQKV + L+T+VNLAWT+G + TRFGIAAK
Sbjct: 61 TRNNFAVGYRTGDFQLHTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAK 120
Query: 743 YQIDPDACFSAKVNNSSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 919
YQ+DP A SAKVNNSSLIG+G TQTL+PG+KLTLSAL+DGKN+NAGGHKLGL LE +A
Sbjct: 121 YQLDPTASISAKVNNSSLIGVGDTQTLRPGVKLTLSALVDGKNINAGGHKLGLALELEA 179
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 57,978,871
Number of extensions: 1549773
Number of successful extensions: 4959
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4938
Number of HSP's successfully gapped: 6
Length of query: 495
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 389
Effective length of database: 14,174,046
Effective search space: 5513703894
Effective search space used: 5513703894
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012598
(1486 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999125.1| voltage-dependent anion-selective channel prote... 573 e-164
Alignment gi|NP_999534.1| voltage-dependent anion-selective channel prote... 461 e-130
Alignment gi|XP_003134279.2| PREDICTED: voltage-dependent anion-selective... 412 e-115
Alignment gi|NP_999529.1| voltage-dependent anion-selective channel prote... 410 e-115
Alignment gi|XP_003361001.1| PREDICTED: voltage-dependent anion-selective... 408 e-114
>ref|NP_999125.1| voltage-dependent anion-selective channel protein 1 [Sus scrofa].
Length = 283
Score = 573 bits (1478), Expect = e-164
Identities = 283/283 (100%), Positives = 283/283 (100%)
Frame = +2
Query: 71 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 250
MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET
Sbjct: 1 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 60
Query: 251 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 430
KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR
Sbjct: 61 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 120
Query: 431 EHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 610
EHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL
Sbjct: 121 EHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 180
Query: 611 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 790
HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS
Sbjct: 181 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 240
Query: 791 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 919
SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA
Sbjct: 241 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 283
>ref|NP_999534.1| voltage-dependent anion-selective channel protein 2 [Sus scrofa].
Length = 294
Score = 461 bits (1186), Expect = e-130
Identities = 213/283 (75%), Positives = 258/283 (91%)
Frame = +2
Query: 71 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 250
M +PP+YADLGK+ARD+F KG+GFGL+KLD+KTKS +G+EF++SGS+NT+T KVTG+LET
Sbjct: 12 MCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLET 71
Query: 251 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 430
KY+W EYGLTFTEKWNTDNTLGTEI +EDQ+ +GLKLTFD++FSPNTGKK+ KIK+ YKR
Sbjct: 72 KYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGKKSGKIKSSYKR 131
Query: 431 EHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 610
E VNLGCDVDFD AGP+I G+ V GYEGWLAGYQM F++AKS++T++NFAVGY+T +FQL
Sbjct: 132 ECVNLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQL 191
Query: 611 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 790
HTNVNDGTEFGGSIYQKV + L+T+VNLAWT+G + TRFGIAAKYQ+DP A SAKVNNS
Sbjct: 192 HTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNS 251
Query: 791 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 919
SLIG+GYTQTL+PG+KLTLSAL+DGK++NAGGHKLGL LE +A
Sbjct: 252 SLIGVGYTQTLRPGVKLTLSALVDGKSINAGGHKLGLALELEA 294
>ref|XP_003134279.2| PREDICTED: voltage-dependent anion-selective channel protein 3-like
isoform 1 [Sus scrofa].
Length = 283
Score = 412 bits (1059), Expect = e-115
Identities = 193/283 (68%), Positives = 244/283 (86%)
Frame = +2
Query: 71 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 250
M PTY DLGK+A+DVF KGYGFG++K+DL+TKS +G+EF++SG A T+T K +G+LET
Sbjct: 1 MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLRTKSCSGVEFSTSGHAYTDTGKASGNLET 60
Query: 251 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 430
KY+ +YGLTFT+KWNTDNTLGTEI++E++LA GLKLT D+ F PNTGKK+ K+K YKR
Sbjct: 61 KYKICDYGLTFTQKWNTDNTLGTEISLENKLAEGLKLTLDTIFVPNTGKKSGKLKASYKR 120
Query: 431 EHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 610
E ++G +VD D AGP+I G VL EGWLAGYQM+F+TAKS+++Q+NFA+GYK +FQL
Sbjct: 121 ECFSIGSNVDIDFAGPTIYGWAVLALEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQL 180
Query: 611 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 790
HT+VNDGTEFGGSIYQKVN+K+ET++NLAWTAG++NTRFGIAAKY++D SAKVNN+
Sbjct: 181 HTHVNDGTEFGGSIYQKVNEKIETSINLAWTAGSNNTRFGIAAKYKLDCRTSLSAKVNNA 240
Query: 791 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 919
SLIGLGYTQTL+PG+KLTLSAL+DGKN +AGGHK+GLG E +A
Sbjct: 241 SLIGLGYTQTLRPGVKLTLSALIDGKNFSAGGHKVGLGFELEA 283
>ref|NP_999529.1| voltage-dependent anion-selective channel protein 3 [Sus scrofa].
Length = 283
Score = 410 bits (1054), Expect = e-115
Identities = 192/283 (67%), Positives = 244/283 (86%)
Frame = +2
Query: 71 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 250
M PTY DLGK+A+DVF KGYGFG++K+DL+TKS +G+EF++SG A T+T K +G+LET
Sbjct: 1 MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLRTKSCSGVEFSTSGHAYTDTGKASGNLET 60
Query: 251 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 430
KY+ ++GLTFT+KWNTDNTLGTEI++E++LA GLKLT D+ F PNTGKK+ K+K YKR
Sbjct: 61 KYKICDHGLTFTQKWNTDNTLGTEISLENKLAEGLKLTLDTIFVPNTGKKSGKLKASYKR 120
Query: 431 EHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 610
E ++G +VD D AGP+I G VL EGWLAGYQM+F+TAKS+++Q+NFA+GYK +FQL
Sbjct: 121 ECFSIGSNVDIDFAGPTIYGWAVLALEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQL 180
Query: 611 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 790
HT+VNDGTEFGGSIYQKVN+K+ET++NLAWTAG++NTRFGIAAKY++D SAKVNN+
Sbjct: 181 HTHVNDGTEFGGSIYQKVNEKIETSINLAWTAGSNNTRFGIAAKYKLDCRTSLSAKVNNA 240
Query: 791 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 919
SLIGLGYTQTL+PG+KLTLSAL+DGKN +AGGHK+GLG E +A
Sbjct: 241 SLIGLGYTQTLRPGVKLTLSALIDGKNFSAGGHKVGLGFELEA 283
>ref|XP_003361001.1| PREDICTED: voltage-dependent anion-selective channel protein 3-like
isoform 2 [Sus scrofa].
Length = 284
Score = 408 bits (1048), Expect = e-114
Identities = 193/284 (67%), Positives = 244/284 (85%), Gaps = 1/284 (0%)
Frame = +2
Query: 71 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENG-LEFTSSGSANTETTKVTGSLE 247
M PTY DLGK+A+DVF KGYGFG++K+DL+TKS +G +EF++SG A T+T K +G+LE
Sbjct: 1 MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLRTKSCSGVMEFSTSGHAYTDTGKASGNLE 60
Query: 248 TKYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYK 427
TKY+ +YGLTFT+KWNTDNTLGTEI++E++LA GLKLT D+ F PNTGKK+ K+K YK
Sbjct: 61 TKYKICDYGLTFTQKWNTDNTLGTEISLENKLAEGLKLTLDTIFVPNTGKKSGKLKASYK 120
Query: 428 REHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQ 607
RE ++G +VD D AGP+I G VL EGWLAGYQM+F+TAKS+++Q+NFA+GYK +FQ
Sbjct: 121 RECFSIGSNVDIDFAGPTIYGWAVLALEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQ 180
Query: 608 LHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNN 787
LHT+VNDGTEFGGSIYQKVN+K+ET++NLAWTAG++NTRFGIAAKY++D SAKVNN
Sbjct: 181 LHTHVNDGTEFGGSIYQKVNEKIETSINLAWTAGSNNTRFGIAAKYKLDCRTSLSAKVNN 240
Query: 788 SSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 919
+SLIGLGYTQTL+PG+KLTLSAL+DGKN +AGGHK+GLG E +A
Sbjct: 241 ASLIGLGYTQTLRPGVKLTLSALIDGKNFSAGGHKVGLGFELEA 284
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 37,354,034
Number of extensions: 996296
Number of successful extensions: 3279
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3268
Number of HSP's successfully gapped: 5
Length of query: 495
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 392
Effective length of database: 8,779,541
Effective search space: 3441580072
Effective search space used: 3441580072
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012598
(1486 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035824.1| voltage-dependent anion-selective channel prote... 570 e-162
Alignment gi|NP_035825.1| voltage-dependent anion-selective channel prote... 454 e-128
Alignment gi|NP_035826.1| voltage-dependent anion-selective channel prote... 410 e-114
Alignment gi|NP_001185927.1| voltage-dependent anion-selective channel pr... 406 e-113
>ref|NP_035824.1| voltage-dependent anion-selective channel protein 1 [Mus musculus].
Length = 283
Score = 570 bits (1468), Expect = e-162
Identities = 279/283 (98%), Positives = 282/283 (99%)
Frame = +2
Query: 71 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 250
MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKV GSLET
Sbjct: 1 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVNGSLET 60
Query: 251 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 430
KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR
Sbjct: 61 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 120
Query: 431 EHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 610
EH+NLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFET+KSRVTQSNFAVGYKTDEFQL
Sbjct: 121 EHINLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETSKSRVTQSNFAVGYKTDEFQL 180
Query: 611 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 790
HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQ+DPDACFSAKVNNS
Sbjct: 181 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQVDPDACFSAKVNNS 240
Query: 791 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 919
SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA
Sbjct: 241 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 283
>ref|NP_035825.1| voltage-dependent anion-selective channel protein 2 [Mus musculus].
Length = 295
Score = 454 bits (1169), Expect = e-128
Identities = 210/283 (74%), Positives = 255/283 (90%)
Frame = +2
Query: 71 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 250
M +PP YADLGK+ARD+F KG+GFGL+KLD+KTKS +G+EF++SGS+NT+T KV+G+LET
Sbjct: 13 MCIPPPYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVSGTLET 72
Query: 251 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 430
KY+W EYGLTFTEKWNTDNTLGTEI +EDQ+ +GLKLTFD++FSPNTGKK+ KIK+ YKR
Sbjct: 73 KYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGKKSGKIKSAYKR 132
Query: 431 EHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 610
E +NLGCDVDFD AGP+I G+ V GYEGWLAGYQM F++AKS++T+SNFAVGY+T +FQL
Sbjct: 133 ECINLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRSNFAVGYRTGDFQL 192
Query: 611 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 790
HTNVN+GTEFGGSIYQKV + +T+VNLAWT+G + TRFGIAAKYQ+DP A SAKVNNS
Sbjct: 193 HTNVNNGTEFGGSIYQKVCEDFDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNS 252
Query: 791 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 919
SLIG+GYTQTL+PG+KLTLSAL+DGK+ NAGGHKLGL LE +A
Sbjct: 253 SLIGVGYTQTLRPGVKLTLSALVDGKSFNAGGHKLGLALELEA 295
>ref|NP_035826.1| voltage-dependent anion-selective channel protein 3 isoform 2 [Mus
musculus].
Length = 283
Score = 410 bits (1055), Expect = e-114
Identities = 192/283 (67%), Positives = 243/283 (85%)
Frame = +2
Query: 71 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 250
M PTY DLGK+A+DVF KGYGFG++K+DLKTKS +G+EF++SG A T+T K +G+LET
Sbjct: 1 MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLKTKSCSGVEFSTSGHAYTDTGKASGNLET 60
Query: 251 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 430
KY+ YGLTFT+KWNTDNTLGTEI+ E++LA GLKLT D+ F PNTGKK+ K+K Y+R
Sbjct: 61 KYKVCNYGLTFTQKWNTDNTLGTEISWENKLAEGLKLTLDTIFVPNTGKKSGKLKASYRR 120
Query: 431 EHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 610
+ +LG +VD D +GP+I G VL +EGWLAGYQM+F+TAKS+++Q+NFA+GYK +FQL
Sbjct: 121 DCFSLGSNVDIDFSGPTIYGWAVLAFEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQL 180
Query: 611 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 790
HT+VNDGTEFGGSIYQKVN+++ET++NLAWTAG++NTRFGIAAKY++D SAKVNN+
Sbjct: 181 HTHVNDGTEFGGSIYQKVNERIETSINLAWTAGSNNTRFGIAAKYKLDCRTSLSAKVNNA 240
Query: 791 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 919
SLIGLGYTQTL+PG+KLTLSAL+DGKN NAGGHK+GLG E +A
Sbjct: 241 SLIGLGYTQTLRPGVKLTLSALIDGKNFNAGGHKVGLGFELEA 283
>ref|NP_001185927.1| voltage-dependent anion-selective channel protein 3 isoform 1 [Mus
musculus].
Length = 284
Score = 406 bits (1044), Expect = e-113
Identities = 192/284 (67%), Positives = 243/284 (85%), Gaps = 1/284 (0%)
Frame = +2
Query: 71 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENG-LEFTSSGSANTETTKVTGSLE 247
M PTY DLGK+A+DVF KGYGFG++K+DLKTKS +G +EF++SG A T+T K +G+LE
Sbjct: 1 MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLKTKSCSGVMEFSTSGHAYTDTGKASGNLE 60
Query: 248 TKYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYK 427
TKY+ YGLTFT+KWNTDNTLGTEI+ E++LA GLKLT D+ F PNTGKK+ K+K Y+
Sbjct: 61 TKYKVCNYGLTFTQKWNTDNTLGTEISWENKLAEGLKLTLDTIFVPNTGKKSGKLKASYR 120
Query: 428 REHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQ 607
R+ +LG +VD D +GP+I G VL +EGWLAGYQM+F+TAKS+++Q+NFA+GYK +FQ
Sbjct: 121 RDCFSLGSNVDIDFSGPTIYGWAVLAFEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQ 180
Query: 608 LHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNN 787
LHT+VNDGTEFGGSIYQKVN+++ET++NLAWTAG++NTRFGIAAKY++D SAKVNN
Sbjct: 181 LHTHVNDGTEFGGSIYQKVNERIETSINLAWTAGSNNTRFGIAAKYKLDCRTSLSAKVNN 240
Query: 788 SSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 919
+SLIGLGYTQTL+PG+KLTLSAL+DGKN NAGGHK+GLG E +A
Sbjct: 241 ASLIGLGYTQTLRPGVKLTLSALIDGKNFNAGGHKVGLGFELEA 284
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 50,464,490
Number of extensions: 1329464
Number of successful extensions: 4219
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4204
Number of HSP's successfully gapped: 4
Length of query: 495
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 390
Effective length of database: 12,463,779
Effective search space: 4860873810
Effective search space used: 4860873810
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012598
(1486 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003365.1| voltage-dependent anion-selective channel prote... 572 e-163
Alignment gi|NP_001171752.1| voltage-dependent anion-selective channel pr... 459 e-129
Alignment gi|NP_001171712.1| voltage-dependent anion-selective channel pr... 459 e-129
Alignment gi|NP_003366.2| voltage-dependent anion-selective channel prote... 459 e-129
Alignment gi|NP_005653.3| voltage-dependent anion-selective channel prote... 409 e-114
Alignment gi|NP_001129166.1| voltage-dependent anion-selective channel pr... 405 e-113
>ref|NP_003365.1| voltage-dependent anion-selective channel protein 1 [Homo sapiens].
Length = 283
Score = 572 bits (1474), Expect = e-163
Identities = 281/283 (99%), Positives = 283/283 (100%)
Frame = +2
Query: 71 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 250
MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET
Sbjct: 1 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 60
Query: 251 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 430
KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR
Sbjct: 61 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 120
Query: 431 EHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 610
EH+NLGCD+DFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL
Sbjct: 121 EHINLGCDMDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 180
Query: 611 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 790
HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS
Sbjct: 181 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 240
Query: 791 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 919
SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA
Sbjct: 241 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 283
>ref|NP_001171752.1| voltage-dependent anion-selective channel protein 2 isoform 2 [Homo
sapiens].
Length = 294
Score = 459 bits (1182), Expect = e-129
Identities = 211/283 (74%), Positives = 258/283 (91%)
Frame = +2
Query: 71 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 250
M +PP+YADLGK+ARD+F KG+GFGL+KLD+KTKS +G+EF++SGS+NT+T KVTG+LET
Sbjct: 12 MCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLET 71
Query: 251 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 430
KY+W EYGLTFTEKWNTDNTLGTEI +EDQ+ +GLKLTFD++FSPNTGKK+ KIK+ YKR
Sbjct: 72 KYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGKKSGKIKSSYKR 131
Query: 431 EHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 610
E +NLGCDVDFD AGP+I G+ V GYEGWLAGYQM F++AKS++T++NFAVGY+T +FQL
Sbjct: 132 ECINLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQL 191
Query: 611 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 790
HTNVNDGTEFGGSIYQKV + L+T+VNLAWT+G + TRFGIAAKYQ+DP A SAKVNNS
Sbjct: 192 HTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNS 251
Query: 791 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 919
SLIG+GYTQTL+PG+KLTLSAL+DGK++NAGGHK+GL LE +A
Sbjct: 252 SLIGVGYTQTLRPGVKLTLSALVDGKSINAGGHKVGLALELEA 294
>ref|NP_001171712.1| voltage-dependent anion-selective channel protein 2 isoform 1 [Homo
sapiens].
Length = 309
Score = 459 bits (1182), Expect = e-129
Identities = 211/283 (74%), Positives = 258/283 (91%)
Frame = +2
Query: 71 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 250
M +PP+YADLGK+ARD+F KG+GFGL+KLD+KTKS +G+EF++SGS+NT+T KVTG+LET
Sbjct: 27 MCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLET 86
Query: 251 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 430
KY+W EYGLTFTEKWNTDNTLGTEI +EDQ+ +GLKLTFD++FSPNTGKK+ KIK+ YKR
Sbjct: 87 KYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGKKSGKIKSSYKR 146
Query: 431 EHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 610
E +NLGCDVDFD AGP+I G+ V GYEGWLAGYQM F++AKS++T++NFAVGY+T +FQL
Sbjct: 147 ECINLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQL 206
Query: 611 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 790
HTNVNDGTEFGGSIYQKV + L+T+VNLAWT+G + TRFGIAAKYQ+DP A SAKVNNS
Sbjct: 207 HTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNS 266
Query: 791 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 919
SLIG+GYTQTL+PG+KLTLSAL+DGK++NAGGHK+GL LE +A
Sbjct: 267 SLIGVGYTQTLRPGVKLTLSALVDGKSINAGGHKVGLALELEA 309
>ref|NP_003366.2| voltage-dependent anion-selective channel protein 2 isoform 2 [Homo
sapiens].
Length = 294
Score = 459 bits (1182), Expect = e-129
Identities = 211/283 (74%), Positives = 258/283 (91%)
Frame = +2
Query: 71 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 250
M +PP+YADLGK+ARD+F KG+GFGL+KLD+KTKS +G+EF++SGS+NT+T KVTG+LET
Sbjct: 12 MCIPPSYADLGKAARDIFNKGFGFGLVKLDVKTKSCSGVEFSTSGSSNTDTGKVTGTLET 71
Query: 251 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 430
KY+W EYGLTFTEKWNTDNTLGTEI +EDQ+ +GLKLTFD++FSPNTGKK+ KIK+ YKR
Sbjct: 72 KYKWCEYGLTFTEKWNTDNTLGTEIAIEDQICQGLKLTFDTTFSPNTGKKSGKIKSSYKR 131
Query: 431 EHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 610
E +NLGCDVDFD AGP+I G+ V GYEGWLAGYQM F++AKS++T++NFAVGY+T +FQL
Sbjct: 132 ECINLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQL 191
Query: 611 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 790
HTNVNDGTEFGGSIYQKV + L+T+VNLAWT+G + TRFGIAAKYQ+DP A SAKVNNS
Sbjct: 192 HTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNS 251
Query: 791 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 919
SLIG+GYTQTL+PG+KLTLSAL+DGK++NAGGHK+GL LE +A
Sbjct: 252 SLIGVGYTQTLRPGVKLTLSALVDGKSINAGGHKVGLALELEA 294
>ref|NP_005653.3| voltage-dependent anion-selective channel protein 3 isoform b [Homo
sapiens].
Length = 283
Score = 409 bits (1052), Expect = e-114
Identities = 192/283 (67%), Positives = 242/283 (85%)
Frame = +2
Query: 71 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLET 250
M PTY DLGK+A+DVF KGYGFG++K+DLKTKS +G+EF++SG A T+T K +G+LET
Sbjct: 1 MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLKTKSCSGVEFSTSGHAYTDTGKASGNLET 60
Query: 251 KYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKR 430
KY+ YGLTFT+KWNTDNTLGTEI+ E++LA GLKLT D+ F PNTGKK+ K+K YKR
Sbjct: 61 KYKVCNYGLTFTQKWNTDNTLGTEISWENKLAEGLKLTLDTIFVPNTGKKSGKLKASYKR 120
Query: 431 EHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQL 610
+ ++G +VD D +GP+I G VL +EGWLAGYQM+F+TAKS+++Q+NFA+GYK +FQL
Sbjct: 121 DCFSVGSNVDIDFSGPTIYGWAVLAFEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQL 180
Query: 611 HTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNS 790
HT+VNDGTEFGGSIYQKVN+K+ET++NLAWTAG++NTRFGIAAKY +D SAKVNN+
Sbjct: 181 HTHVNDGTEFGGSIYQKVNEKIETSINLAWTAGSNNTRFGIAAKYMLDCRTSLSAKVNNA 240
Query: 791 SLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 919
SLIGLGYTQTL+PG+KLTLSAL+DGKN +AGGHK+GLG E +A
Sbjct: 241 SLIGLGYTQTLRPGVKLTLSALIDGKNFSAGGHKVGLGFELEA 283
>ref|NP_001129166.1| voltage-dependent anion-selective channel protein 3 isoform a [Homo
sapiens].
Length = 284
Score = 405 bits (1041), Expect = e-113
Identities = 192/284 (67%), Positives = 242/284 (85%), Gaps = 1/284 (0%)
Frame = +2
Query: 71 MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENG-LEFTSSGSANTETTKVTGSLE 247
M PTY DLGK+A+DVF KGYGFG++K+DLKTKS +G +EF++SG A T+T K +G+LE
Sbjct: 1 MCNTPTYCDLGKAAKDVFNKGYGFGMVKIDLKTKSCSGVMEFSTSGHAYTDTGKASGNLE 60
Query: 248 TKYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYK 427
TKY+ YGLTFT+KWNTDNTLGTEI+ E++LA GLKLT D+ F PNTGKK+ K+K YK
Sbjct: 61 TKYKVCNYGLTFTQKWNTDNTLGTEISWENKLAEGLKLTLDTIFVPNTGKKSGKLKASYK 120
Query: 428 REHVNLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQ 607
R+ ++G +VD D +GP+I G VL +EGWLAGYQM+F+TAKS+++Q+NFA+GYK +FQ
Sbjct: 121 RDCFSVGSNVDIDFSGPTIYGWAVLAFEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQ 180
Query: 608 LHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNN 787
LHT+VNDGTEFGGSIYQKVN+K+ET++NLAWTAG++NTRFGIAAKY +D SAKVNN
Sbjct: 181 LHTHVNDGTEFGGSIYQKVNEKIETSINLAWTAGSNNTRFGIAAKYMLDCRTSLSAKVNN 240
Query: 788 SSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 919
+SLIGLGYTQTL+PG+KLTLSAL+DGKN +AGGHK+GLG E +A
Sbjct: 241 ASLIGLGYTQTLRPGVKLTLSALIDGKNFSAGGHKVGLGFELEA 284
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 59,459,594
Number of extensions: 1576924
Number of successful extensions: 5008
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4993
Number of HSP's successfully gapped: 6
Length of query: 495
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 388
Effective length of database: 14,770,016
Effective search space: 5730766208
Effective search space used: 5730766208
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012598
(1486 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 1405 0.0
Sscrofa_Chr02 1253 0.0
>Sscrofa_Chr05
|| Length = 111506441
Score = 1405 bits (709), Expect = 0.0
Identities = 1024/1128 (90%), Gaps = 7/1128 (0%)
Strand = Plus / Plus
Query: 151 aaaacttgatttgaaaacaaaatctgagaatggactggaatttacaagctcaggttcagc 210
|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 65715183 aaaaattgatttgaaaatcaaatctgagaatggactggaatttacaagctcaggttcagc 65715242
Query: 211 caacacggagaccaccaaagtgacgggcagtctggaaaccaagtacagatggaccgaata 270
|||| | || || |||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 65715243 caaccctgaaacaaccagagtgatgggcagtctggaaaccaagtacagatggaccgaata 65715302
Query: 271 tggtctgacgtttacagagaagtggaacaccgacaacaccctgggcacggagattaccgt 330
||||||||||||| |||||| || ||| || ||| |||| || |||||||||||||| |
Sbjct: 65715303 tggtctgacgtttccagagacgtagaa-actgaccacacactaggcacggagattactct 65715361
Query: 331 ggaagatcagcttgcccgtggactgaagctgacctttgattcatccttctcaccaaacac 390
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65715362 ggaagatcagcttgcacgtggactgaagctgacctttgattcatccttctcaccaaacac 65715421
Query: 391 tgggnnnnnnnnt-gccaaaatcaagaccgggtataagcgggagcacgtcaacctgggct 449
|||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 65715422 tggggggaaaaaaagccaaactcaagaccgggtataagcgggagcacgtcaacctgggct 65715481
Query: 450 gcgacgtggatttcgacatcgccgggccgtccatccgcggtgctctcgtgctgggttacg 509
|| ||||||||||| | || ||||| || ||||||| ||||||||||||||||| ||| |
Sbjct: 65715482 gcaacgtggatttcaatattgccggaccttccatcctcggtgctctcgtgctggcttatg 65715541
Query: 510 agggctggctggcgggctaccagatgaattttgagaccgccaagtcccgagtgacccaga 569
||||||||||||| |||||||||||||||| ||||||| |||||||| ||||||||||||
Sbjct: 65715542 agggctggctggcaggctaccagatgaattctgagaccaccaagtccggagtgacccaga 65715601
Query: 570 gcaactttgcagtcggctacaagaccgatgaattccagcttcacactaatgtaaatgatg 629
|||||||||| || ||||||||||| ||||| ||||||||||||||||| ||||||||||
Sbjct: 65715602 gcaactttgctgttggctacaagactgatgagttccagcttcacactaaagtaaatgatg 65715661
Query: 630 ggacggagtttggtggctccatttatcagaaggtgaacaagaagttggagaccgctgtta 689
|||| ||||||| |||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 65715662 ggac--agtttggcggctccatttatcagaaggtgaacaagaagttggaggtggctctta 65715719
Query: 690 atcttgcctggacagcaggaaacagcaacacacgctttggaatagcagccaagtaccaga 749
|||| | ||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 65715720 atctcgtctggacagcaggagacagcaacacgggctttggaatagcagccaagtaccaga 65715779
Query: 750 tcgaccctgacgcctgcttctcggctaaagtgaacaactccagcctgataggcttaggat 809
| |||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||
Sbjct: 65715780 tggaccctgacgcctgcttctcagctaaagtgaacaactgcagcctgatagaattaggat 65715839
Query: 810 acactcagaccctaaagccaggtatcaaactgacgctgtccgctctgctggatggcaaga 869
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 65715840 acactcagaccctaaagccaggtatcaaactgacgctgtcagctctgctggctggcaaga 65715899
Query: 870 atgtcaacgccggtggccacaagcttggtctaggactggagtttcaagcataaacgaata 929
|||||| || |||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 65715900 gtgtcaatgctggtggccacacgcttggtctaggactggagtttcacgcataaacgaata 65715959
Query: 930 ctgtacaatcgtttaattttaaactattttgcagcatagctaccttcagaatctagtgta 989
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65715960 ctgtacaatcgtttaattttaaactattttgcagcatagctaccttcagaatctagtgta 65716019
Query: 990 ccttttactgttgtacgtctggggatgcaagtattgctaaatatcctgttagacttccag 1049
||||||| |||||||||||| | |||||||||||||||||||||| || |||||||||||
Sbjct: 65716020 ccttttaatgttgtacgtct-gagatgcaagtattgctaaatatcatggtagacttccag 65716078
Query: 1050 gttcaagatgattcagctttaggatgttaccctttcagaggtacagaagaaacccaattc 1109
| | ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 65716079 ggtaaagatgattcagctttagggtgttaccctttcagaggtaccgaagaaacccaattc 65716138
Query: 1110 cnnnnnnnnnggtcctttcagctgcagacttggggggagcttgctggaccctctcgagat 1169
| |||||||||||||||||||||||||||| || |||||||||||| ||||
Sbjct: 65716139 c--aaaaaaaggtcctttcagctgcagacttggggggacctcgctggaccctctagagag 65716196
Query: 1170 gtccggtttctttttgacctagagatggctgcaggtggaagcggatgctttgtaggcact 1229
|||| |||||||||||||||||||||||||||| |||||||| || ||||||||||||
Sbjct: 65716197 gtccagtttctttttgacctagagatggctgcaagtggaagctgagaatttgtaggcact 65716256
Query: 1230 ttgtaaattcgtactgagtaaaggaatgaaattgtgacttcccgagaa 1277
|||||||||| ||||||||||| ||||||||||||||||||| |||||
Sbjct: 65716257 ttgtaaattcttactgagtaaatgaatgaaattgtgacttcctgagaa 65716304
Score = 165 bits (83), Expect = 9e-38
Identities = 95/99 (95%)
Strand = Plus / Plus
Query: 66 agaagatggctgtgcctcctacgtatgccgatcttggcaagtctgccagggatgtcttca 125
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 65714804 agaagatggctgtgcctcccgtgtatgccgatcttggcaagtctgccagggatgtcttca 65714863
Query: 126 ccaagggctatggatttggcctaataaaacttgatttga 164
|||||||||||||||||||| ||||||||||||||||||
Sbjct: 65714864 ccaagggctatggatttggcttaataaaacttgatttga 65714902
Score = 161 bits (81), Expect = 1e-36
Identities = 99/105 (94%)
Strand = Plus / Plus
Query: 1343 ctgaaagggacttttttaaaaaggcaaaccttcacgacctgttttcacccccttccatca 1402
||||||||||||||||| |||||||||||||||| ||||| |||||||||| |||||||
Sbjct: 65716729 ctgaaagggactttttttaaaaggcaaaccttcatgacctattttcaccccagtccatca 65716788
Query: 1403 cctcctttacaccaaaagtagtctgcagggcatggtagctgtttc 1447
|||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 65716789 cctcgtttacaccaaaagtagtctgcagggcatggtagctgtttc 65716833
>Sscrofa_Chr02
|| Length = 162569375
Score = 1253 bits (632), Expect = 0.0
Identities = 650/659 (98%)
Strand = Plus / Minus
Query: 828 caggtatcaaactgacgctgtccgctctgctggatggcaagaatgtcaacgccggtggcc 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141877753 caggtatcaaactgacgctgtccgctctgctggatggcaagaatgtcaacgccggtggcc 141877694
Query: 888 acaagcttggtctaggactggagtttcaagcataaacgaatactgtacaatcgtttaatt 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141877693 acaagcttggtctaggactggagtttcaagcataaacgaatactgtacaatcgtttaatt 141877634
Query: 948 ttaaactattttgcagcatagctaccttcagaatctagtgtaccttttactgttgtacgt 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141877633 ttaaactattttgcagcatagctaccttcagaatctagtgtaccttttactgttgtacgt 141877574
Query: 1008 ctggggatgcaagtattgctaaatatcctgttagacttccaggttcaagatgattcagct 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141877573 ctggggatgcaagtattgctaaatatcctgttagacttccaggttcaagatgattcagct 141877514
Query: 1068 ttaggatgttaccctttcagaggtacagaagaaacccaattccnnnnnnnnnggtccttt 1127
||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 141877513 ttaggatgttaccctttcagaggtacagaagaaacccaattccaaaaaaaaaggtccttt 141877454
Query: 1128 cagctgcagacttggggggagcttgctggaccctctcgagatgtccggtttctttttgac 1187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141877453 cagctgcagacttggggggagcttgctggaccctctcgagatgtccggtttctttttgac 141877394
Query: 1188 ctagagatggctgcaggtggaagcggatgctttgtaggcactttgtaaattcgtactgag 1247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141877393 ctagagatggctgcaggtggaagcggatgctttgtaggcactttgtaaattcgtactgag 141877334
Query: 1248 taaaggaatgaaattgtgacttcccgagaactgacccttggtttcctaccctgcgggagg 1307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141877333 taaaggaatgaaattgtgacttcccgagaactgacccttggtttcctaccctgcgggagg 141877274
Query: 1308 agaggcgcgctgttggatggcaggcacagacgcatctgaaagggacttttttaaaaaggc 1367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141877273 agaggcgcgctgttggatggcaggcacagacgcatctgaaagggacttttttaaaaaggc 141877214
Query: 1368 aaaccttcacgacctgttttcacccccttccatcacctcctttacaccaaaagtagtctg 1427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141877213 aaaccttcacgacctgttttcacccccttccatcacctcctttacaccaaaagtagtctg 141877154
Query: 1428 cagggcatggtagctgtttcttttgtgccattttggggtggaggtggtggatgtgatga 1486
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141877153 cagggcatggtagctgtttcttttgtgccattttggggtggaggtggtggatgtgatga 141877095
Score = 418 bits (211), Expect = e-114
Identities = 217/219 (99%)
Strand = Plus / Minus
Query: 403 tgccaaaatcaagaccgggtataagcgggagcacgtcaacctgggctgcgacgtggattt 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141886048 tgccaaaatcaagaccgggtataagcgggagcacgtcaacctgggctgcgacgtggattt 141885989
Query: 463 cgacatcgccgggccgtccatccgcggtgctctcgtgctgggttacgagggctggctggc 522
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 141885988 cgacatcgctgggccgtccatccgcggtgctctcgtgctgggttatgagggctggctggc 141885929
Query: 523 gggctaccagatgaattttgagaccgccaagtcccgagtgacccagagcaactttgcagt 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141885928 gggctaccagatgaattttgagaccgccaagtcccgagtgacccagagcaactttgcagt 141885869
Query: 583 cggctacaagaccgatgaattccagcttcacactaatgt 621
|||||||||||||||||||||||||||||||||||||||
Sbjct: 141885868 cggctacaagaccgatgaattccagcttcacactaatgt 141885830
Score = 305 bits (154), Expect = 4e-80
Identities = 154/154 (100%)
Strand = Plus / Minus
Query: 187 ggaatttacaagctcaggttcagccaacacggagaccaccaaagtgacgggcagtctgga 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141893460 ggaatttacaagctcaggttcagccaacacggagaccaccaaagtgacgggcagtctgga 141893401
Query: 247 aaccaagtacagatggaccgaatatggtctgacgtttacagagaagtggaacaccgacaa 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141893400 aaccaagtacagatggaccgaatatggtctgacgtttacagagaagtggaacaccgacaa 141893341
Query: 307 caccctgggcacggagattaccgtggaagatcag 340
||||||||||||||||||||||||||||||||||
Sbjct: 141893340 caccctgggcacggagattaccgtggaagatcag 141893307
Score = 301 bits (152), Expect = 6e-79
Identities = 152/152 (100%)
Strand = Plus / Minus
Query: 622 aaatgatgggacggagtttggtggctccatttatcagaaggtgaacaagaagttggagac 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141881314 aaatgatgggacggagtttggtggctccatttatcagaaggtgaacaagaagttggagac 141881255
Query: 682 cgctgttaatcttgcctggacagcaggaaacagcaacacacgctttggaatagcagccaa 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141881254 cgctgttaatcttgcctggacagcaggaaacagcaacacacgctttggaatagcagccaa 141881195
Query: 742 gtaccagatcgaccctgacgcctgcttctcgg 773
||||||||||||||||||||||||||||||||
Sbjct: 141881194 gtaccagatcgaccctgacgcctgcttctcgg 141881163
Score = 145 bits (73), Expect = 8e-32
Identities = 73/73 (100%)
Strand = Plus / Minus
Query: 66 agaagatggctgtgcctcctacgtatgccgatcttggcaagtctgccagggatgtcttca 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141895221 agaagatggctgtgcctcctacgtatgccgatcttggcaagtctgccagggatgtcttca 141895162
Query: 126 ccaagggctatgg 138
|||||||||||||
Sbjct: 141895161 ccaagggctatgg 141895149
Score = 133 bits (67), Expect = 3e-28
Identities = 67/67 (100%)
Strand = Plus / Minus
Query: 1 tggctcggttgctcacgctgcagcccccgccgtagtcgccgcggagcccactgccaccgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141909016 tggctcggttgctcacgctgcagcccccgccgtagtcgccgcggagcccactgccaccgc 141908957
Query: 61 ttcggag 67
|||||||
Sbjct: 141908956 ttcggag 141908950
Score = 125 bits (63), Expect = 7e-26
Identities = 63/63 (100%)
Strand = Plus / Minus
Query: 772 ggctaaagtgaacaactccagcctgataggcttaggatacactcagaccctaaagccagg 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141878414 ggctaaagtgaacaactccagcctgataggcttaggatacactcagaccctaaagccagg 141878355
Query: 832 tat 834
|||
Sbjct: 141878354 tat 141878352
Score = 107 bits (54), Expect = 2e-20
Identities = 57/58 (98%)
Strand = Plus / Minus
Query: 337 tcagcttgcccgtggactgaagctgacctttgattcatccttctcaccaaacactggg 394
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 141893222 tcagcttgcccgtggactgaagctgacctttgattcatccttctcaccgaacactggg 141893165
Score = 103 bits (52), Expect = 3e-19
Identities = 52/52 (100%)
Strand = Plus / Minus
Query: 137 ggatttggcctaataaaacttgatttgaaaacaaaatctgagaatggactgg 188
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141894623 ggatttggcctaataaaacttgatttgaaaacaaaatctgagaatggactgg 141894572
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 40,810,142
Number of extensions: 242
Number of successful extensions: 242
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 239
Number of HSP's successfully gapped: 15
Length of query: 1486
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1465
Effective length of database: 2,808,413,156
Effective search space: 4114325273540
Effective search space used: 4114325273540
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)