Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012600
(1047 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_861671.1| PREDICTED: similar to Small nuclear ribonucleop... 262 3e-71
Alignment gi|XP_542930.2| PREDICTED: similar to Small nuclear ribonucleop... 262 3e-71
Alignment gi|XP_536165.1| PREDICTED: similar to small nuclear ribonucleop... 257 1e-68
Alignment gi|XP_848476.1| PREDICTED: similar to small nuclear ribonucleop... 257 1e-68
Alignment gi|XP_856146.1| PREDICTED: similar to small nuclear ribonucleop... 243 3e-64
Alignment gi|XP_546848.2| PREDICTED: similar to Small nuclear ribonucleop... 205 5e-53
Alignment gi|XP_854527.1| PREDICTED: similar to small nuclear ribonucleop... 197 1e-50
Alignment gi|XP_861701.1| PREDICTED: similar to Small nuclear ribonucleop... 104 3e-24
Alignment gi|XP_861612.1| PREDICTED: similar to Small nuclear ribonucleop... 104 3e-24
>ref|XP_861671.1| PREDICTED: similar to Small nuclear ribonucleoprotein associated
protein B (snRNP-B) (Sm protein B) (Sm-B) (SmB) isoform
4 [Canis familiaris].
Length = 240
Score = 262 bits (669), Expect(2) = 3e-71
Identities = 134/168 (79%), Positives = 134/168 (79%)
Frame = +2
Query: 152 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 331
MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 332 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLXXXXXXXXXXXXXXXXXXXXVPM 511
REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPL VPM
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 512 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVXXXXXXXXXXXXXXPTQY 655
PQAPAGLAGPVRGVGGPSQQVMTPQGRGTV PTQY
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQY 168
Score = 26.2 bits (56), Expect(2) = 3e-71
Identities = 17/61 (27%), Positives = 18/61 (29%)
Frame = +1
Query: 643 PNPVPTWPSRSSPAYGPRSPPSRHDGPTSWYEASHGSPHGNPPWTRNSNGHAPTRNAAPS 822
P P P G +PP GP G P G PP G P P
Sbjct: 165 PTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPP 224
Query: 823 P 825
P
Sbjct: 225 P 225
>ref|XP_542930.2| PREDICTED: similar to Small nuclear ribonucleoprotein associated
protein B (snRNP-B) (Sm protein B) (Sm-B) (SmB) isoform
1 [Canis familiaris].
Length = 231
Score = 262 bits (669), Expect(2) = 3e-71
Identities = 134/168 (79%), Positives = 134/168 (79%)
Frame = +2
Query: 152 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 331
MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 332 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLXXXXXXXXXXXXXXXXXXXXVPM 511
REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPL VPM
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 512 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVXXXXXXXXXXXXXXPTQY 655
PQAPAGLAGPVRGVGGPSQQVMTPQGRGTV PTQY
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQY 168
Score = 26.2 bits (56), Expect(2) = 3e-71
Identities = 17/61 (27%), Positives = 18/61 (29%)
Frame = +1
Query: 643 PNPVPTWPSRSSPAYGPRSPPSRHDGPTSWYEASHGSPHGNPPWTRNSNGHAPTRNAAPS 822
P P P G +PP GP G P G PP G P P
Sbjct: 165 PTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPP 224
Query: 823 P 825
P
Sbjct: 225 P 225
>ref|XP_536165.1| PREDICTED: similar to small nuclear ribonucleoparticle-associated
protein isoform 4 [Canis familiaris].
Length = 240
Score = 257 bits (657), Expect = 1e-68
Identities = 131/168 (77%), Positives = 133/168 (79%)
Frame = +2
Query: 152 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 331
MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKN+KQ E
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 332 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLXXXXXXXXXXXXXXXXXXXXVPM 511
REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPL VP+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 512 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVXXXXXXXXXXXXXXPTQY 655
PQAPAGLAGPVRGVGGPSQQVMTPQGRGTV PTQY
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQY 168
>ref|XP_848476.1| PREDICTED: similar to small nuclear ribonucleoparticle-associated
protein isoform 5 [Canis familiaris].
Length = 240
Score = 257 bits (657), Expect = 1e-68
Identities = 131/168 (77%), Positives = 133/168 (79%)
Frame = +2
Query: 152 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 331
MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKN+KQ E
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 332 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLXXXXXXXXXXXXXXXXXXXXVPM 511
REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPL VP+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 512 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVXXXXXXXXXXXXXXPTQY 655
PQAPAGLAGPVRGVGGPSQQVMTPQGRGTV PTQY
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQY 168
>ref|XP_856146.1| PREDICTED: similar to small nuclear ribonucleoparticle-associated
protein isoform 6 [Canis familiaris].
Length = 232
Score = 243 bits (619), Expect = 3e-64
Identities = 123/160 (76%), Positives = 125/160 (78%)
Frame = +2
Query: 176 MLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLG 355
MLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKN+KQ EREEKRVLG
Sbjct: 1 MLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLG 60
Query: 356 LVLLRGENLVSMTVEGPPPKDTGIARVPLXXXXXXXXXXXXXXXXXXXXVPMPQAPAGLA 535
LVLLRGENLVSMTVEGPPPKDTGIARVPL VP+PQAPAGLA
Sbjct: 61 LVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLA 120
Query: 536 GPVRGVGGPSQQVMTPQGRGTVXXXXXXXXXXXXXXPTQY 655
GPVRGVGGPSQQVMTPQGRGTV PTQY
Sbjct: 121 GPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQY 160
>ref|XP_546848.2| PREDICTED: similar to Small nuclear ribonucleoprotein associated
protein B (snRNP-B) (Sm protein B) (Sm-B) (SmB) [Canis
familiaris].
Length = 131
Score = 205 bits (522), Expect = 5e-53
Identities = 104/131 (79%), Positives = 107/131 (81%)
Frame = +2
Query: 152 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 331
MTVGKSS+MLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCD+ RKIKPKNSKQAE
Sbjct: 1 MTVGKSSRMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDKSRKIKPKNSKQAE 60
Query: 332 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLXXXXXXXXXXXXXXXXXXXXVPM 511
REEK+V GLVLL GENLVSMTVEGPPPKDTGIA VPL VPM
Sbjct: 61 REEKQVFGLVLLLGENLVSMTVEGPPPKDTGIAPVPLAGAAGAPGIGRAAGRGIRAGVPM 120
Query: 512 PQAPAGLAGPV 544
PQAPAGLAGPV
Sbjct: 121 PQAPAGLAGPV 131
>ref|XP_854527.1| PREDICTED: similar to small nuclear ribonucleoparticle-associated
protein [Canis familiaris].
Length = 131
Score = 197 bits (502), Expect = 1e-50
Identities = 99/131 (75%), Positives = 103/131 (78%)
Frame = +2
Query: 152 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 331
MTVG SS+ LQHIDYRMRCILQDG+IFIGTFKAFDK MNLILCDCDEFRKIKP+N KQ E
Sbjct: 1 MTVGNSSQTLQHIDYRMRCILQDGQIFIGTFKAFDKRMNLILCDCDEFRKIKPRNVKQPE 60
Query: 332 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLXXXXXXXXXXXXXXXXXXXXVPM 511
REEKRVLGLVLLRGENL SMTVEGPPPKDTGIARVP VP+
Sbjct: 61 REEKRVLGLVLLRGENLASMTVEGPPPKDTGIARVPFAGAAGRPGVGRAAGREVPAGVPI 120
Query: 512 PQAPAGLAGPV 544
PQAP GLAGPV
Sbjct: 121 PQAPVGLAGPV 131
>ref|XP_861701.1| PREDICTED: similar to Small nuclear ribonucleoprotein associated
protein B (snRNP-B) (Sm protein B) (Sm-B) (SmB) (SM11)
isoform 5 [Canis familiaris].
Length = 161
Score = 104 bits (260), Expect(2) = 3e-24
Identities = 55/89 (61%), Positives = 55/89 (61%)
Frame = +2
Query: 389 MTVEGPPPKDTGIARVPLXXXXXXXXXXXXXXXXXXXXVPMPQAPAGLAGPVRGVGGPSQ 568
MTVEGPPPKDTGIARVPL VPMPQAPAGLAGPVRGVGGPSQ
Sbjct: 1 MTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQ 60
Query: 569 QVMTPQGRGTVXXXXXXXXXXXXXXPTQY 655
QVMTPQGRGTV PTQY
Sbjct: 61 QVMTPQGRGTVAAAAAAATASIAGAPTQY 89
Score = 26.2 bits (56), Expect(2) = 3e-24
Identities = 17/61 (27%), Positives = 18/61 (29%)
Frame = +1
Query: 643 PNPVPTWPSRSSPAYGPRSPPSRHDGPTSWYEASHGSPHGNPPWTRNSNGHAPTRNAAPS 822
P P P G +PP GP G P G PP G P P
Sbjct: 86 PTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPP 145
Query: 823 P 825
P
Sbjct: 146 P 146
>ref|XP_861612.1| PREDICTED: similar to Small nuclear ribonucleoprotein associated
protein B (snRNP-B) (Sm protein B) (Sm-B) (SmB) (SM11)
isoform 3 [Canis familiaris].
Length = 161
Score = 104 bits (260), Expect(2) = 3e-24
Identities = 55/89 (61%), Positives = 55/89 (61%)
Frame = +2
Query: 389 MTVEGPPPKDTGIARVPLXXXXXXXXXXXXXXXXXXXXVPMPQAPAGLAGPVRGVGGPSQ 568
MTVEGPPPKDTGIARVPL VPMPQAPAGLAGPVRGVGGPSQ
Sbjct: 1 MTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQ 60
Query: 569 QVMTPQGRGTVXXXXXXXXXXXXXXPTQY 655
QVMTPQGRGTV PTQY
Sbjct: 61 QVMTPQGRGTVAAAAAAATASIAGAPTQY 89
Score = 26.2 bits (56), Expect(2) = 3e-24
Identities = 17/61 (27%), Positives = 18/61 (29%)
Frame = +1
Query: 643 PNPVPTWPSRSSPAYGPRSPPSRHDGPTSWYEASHGSPHGNPPWTRNSNGHAPTRNAAPS 822
P P P G +PP GP G P G PP G P P
Sbjct: 86 PTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPP 145
Query: 823 P 825
P
Sbjct: 146 P 146
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,400,723
Number of extensions: 1143951
Number of successful extensions: 5801
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 5675
Number of HSP's successfully gapped: 13
Length of query: 349
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 245
Effective length of database: 15,407,560
Effective search space: 3774852200
Effective search space used: 3774852200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012600
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012600
(1047 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029903.1| small nuclear ribonucleoprotein-associated p... 262 2e-71
Alignment gi|NP_001073265.1| small nuclear ribonucleoprotein-associated p... 257 8e-70
>ref|NP_001029903.1| small nuclear ribonucleoprotein-associated protein B' [Bos taurus].
Length = 240
Score = 262 bits (669), Expect(2) = 2e-71
Identities = 134/168 (79%), Positives = 134/168 (79%)
Frame = +2
Query: 152 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 331
MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 332 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLXXXXXXXXXXXXXXXXXXXXVPM 511
REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPL VPM
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 512 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVXXXXXXXXXXXXXXPTQY 655
PQAPAGLAGPVRGVGGPSQQVMTPQGRGTV PTQY
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQY 168
Score = 26.6 bits (57), Expect(2) = 2e-71
Identities = 17/61 (27%), Positives = 19/61 (31%)
Frame = +1
Query: 643 PNPVPTWPSRSSPAYGPRSPPSRHDGPTSWYEASHGSPHGNPPWTRNSNGHAPTRNAAPS 822
P P + P G +PP GP G P G PP G P P
Sbjct: 165 PTQYPPGRAGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPP 224
Query: 823 P 825
P
Sbjct: 225 P 225
>ref|NP_001073265.1| small nuclear ribonucleoprotein-associated protein N [Bos taurus].
Length = 240
Score = 257 bits (657), Expect(2) = 8e-70
Identities = 131/168 (77%), Positives = 133/168 (79%)
Frame = +2
Query: 152 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 331
MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKN+KQ E
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 332 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLXXXXXXXXXXXXXXXXXXXXVPM 511
REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPL VP+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 512 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVXXXXXXXXXXXXXXPTQY 655
PQAPAGLAGPVRGVGGPSQQVMTPQGRGTV PTQY
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQY 168
Score = 25.8 bits (55), Expect(2) = 8e-70
Identities = 20/66 (30%), Positives = 23/66 (34%)
Frame = +1
Query: 628 QYCRGPNPVPTWPSRSSPAYGPRSPPSRHDGPTSWYEASHGSPHGNPPWTRNSNGHAPTR 807
QY G PT R++P G +PP P G P G PP G P
Sbjct: 167 QYPPGRGTAPTPVGRATPPPGIMAPPPGMRPPM-------GPPIGLPPTRGTPIGMPPPG 219
Query: 808 NAAPSP 825
P P
Sbjct: 220 MRPPPP 225
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,672,028
Number of extensions: 1100946
Number of successful extensions: 5431
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5353
Number of HSP's successfully gapped: 4
Length of query: 349
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 246
Effective length of database: 14,273,310
Effective search space: 3511234260
Effective search space used: 3511234260
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012600
(1047 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230628.1| small nuclear ribonucleoprotein polypeptide ... 257 9e-70
Alignment gi|XP_003134384.1| PREDICTED: small nuclear ribonucleoprotein-a... 239 1e-63
>ref|NP_001230628.1| small nuclear ribonucleoprotein polypeptide N [Sus scrofa].
Length = 240
Score = 257 bits (657), Expect(2) = 9e-70
Identities = 131/168 (77%), Positives = 133/168 (79%)
Frame = +2
Query: 152 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 331
MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKN+KQ E
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 332 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLXXXXXXXXXXXXXXXXXXXXVPM 511
REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPL VP+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 512 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVXXXXXXXXXXXXXXPTQY 655
PQAPAGLAGPVRGVGGPSQQVMTPQGRGTV PTQY
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQY 168
Score = 25.0 bits (53), Expect(2) = 9e-70
Identities = 20/66 (30%), Positives = 23/66 (34%)
Frame = +1
Query: 628 QYCRGPNPVPTWPSRSSPAYGPRSPPSRHDGPTSWYEASHGSPHGNPPWTRNSNGHAPTR 807
QY G PT R++P G +PP P G P G PP G P
Sbjct: 167 QYPPGRGTPPTPVGRATPPPGIMAPPPGMRPPM-------GPPIGLPPTRGTPIGMPPPG 219
Query: 808 NAAPSP 825
P P
Sbjct: 220 MRPPPP 225
>ref|XP_003134384.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Sus scrofa].
Length = 143
Score = 239 bits (611), Expect = 1e-63
Identities = 121/141 (85%), Positives = 121/141 (85%)
Frame = +2
Query: 152 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 331
MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 332 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLXXXXXXXXXXXXXXXXXXXXVPM 511
REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPL VPM
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 512 PQAPAGLAGPVRGVGGPSQQV 574
PQAPAGLAGPVRGVGGPSQQV
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQV 141
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,375,534
Number of extensions: 714189
Number of successful extensions: 3477
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3435
Number of HSP's successfully gapped: 3
Length of query: 349
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 249
Effective length of database: 8,854,232
Effective search space: 2204703768
Effective search space used: 2204703768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012600
(1047 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033251.1| small nuclear ribonucleoprotein-associated prot... 262 2e-71
Alignment gi|NP_001076431.1| small nuclear ribonucleoprotein-associated p... 257 5e-69
Alignment gi|NP_001076430.1| small nuclear ribonucleoprotein-associated p... 257 5e-69
Alignment gi|NP_038698.1| small nuclear ribonucleoprotein-associated prot... 257 5e-69
>ref|NP_033251.1| small nuclear ribonucleoprotein-associated protein B [Mus
musculus].
Length = 231
Score = 262 bits (669), Expect(2) = 2e-71
Identities = 134/168 (79%), Positives = 134/168 (79%)
Frame = +2
Query: 152 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 331
MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 332 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLXXXXXXXXXXXXXXXXXXXXVPM 511
REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPL VPM
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 512 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVXXXXXXXXXXXXXXPTQY 655
PQAPAGLAGPVRGVGGPSQQVMTPQGRGTV PTQY
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQY 168
Score = 26.2 bits (56), Expect(2) = 2e-71
Identities = 17/61 (27%), Positives = 18/61 (29%)
Frame = +1
Query: 643 PNPVPTWPSRSSPAYGPRSPPSRHDGPTSWYEASHGSPHGNPPWTRNSNGHAPTRNAAPS 822
P P P G +PP GP G P G PP G P P
Sbjct: 165 PTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGLPPGRGTPMGMPPPGMRPPP 224
Query: 823 P 825
P
Sbjct: 225 P 225
>ref|NP_001076431.1| small nuclear ribonucleoprotein-associated protein N [Mus
musculus].
Length = 240
Score = 257 bits (657), Expect(2) = 5e-69
Identities = 131/168 (77%), Positives = 133/168 (79%)
Frame = +2
Query: 152 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 331
MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKN+KQ E
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 332 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLXXXXXXXXXXXXXXXXXXXXVPM 511
REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPL VP+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 512 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVXXXXXXXXXXXXXXPTQY 655
PQAPAGLAGPVRGVGGPSQQVMTPQGRGTV PTQY
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQY 168
Score = 23.1 bits (48), Expect(2) = 5e-69
Identities = 16/61 (26%), Positives = 17/61 (27%)
Frame = +1
Query: 643 PNPVPTWPSRSSPAYGPRSPPSRHDGPTSWYEASHGSPHGNPPWTRNSNGHAPTRNAAPS 822
P P P G +PP P G P G PP G P P
Sbjct: 165 PTQYPPGRGTPPPPVGRATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPP 224
Query: 823 P 825
P
Sbjct: 225 P 225
>ref|NP_001076430.1| small nuclear ribonucleoprotein-associated protein N [Mus
musculus].
Length = 240
Score = 257 bits (657), Expect(2) = 5e-69
Identities = 131/168 (77%), Positives = 133/168 (79%)
Frame = +2
Query: 152 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 331
MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKN+KQ E
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 332 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLXXXXXXXXXXXXXXXXXXXXVPM 511
REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPL VP+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 512 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVXXXXXXXXXXXXXXPTQY 655
PQAPAGLAGPVRGVGGPSQQVMTPQGRGTV PTQY
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQY 168
Score = 23.1 bits (48), Expect(2) = 5e-69
Identities = 16/61 (26%), Positives = 17/61 (27%)
Frame = +1
Query: 643 PNPVPTWPSRSSPAYGPRSPPSRHDGPTSWYEASHGSPHGNPPWTRNSNGHAPTRNAAPS 822
P P P G +PP P G P G PP G P P
Sbjct: 165 PTQYPPGRGTPPPPVGRATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPP 224
Query: 823 P 825
P
Sbjct: 225 P 225
>ref|NP_038698.1| small nuclear ribonucleoprotein-associated protein N [Mus
musculus].
Length = 240
Score = 257 bits (657), Expect(2) = 5e-69
Identities = 131/168 (77%), Positives = 133/168 (79%)
Frame = +2
Query: 152 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 331
MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKN+KQ E
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 332 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLXXXXXXXXXXXXXXXXXXXXVPM 511
REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPL VP+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 512 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVXXXXXXXXXXXXXXPTQY 655
PQAPAGLAGPVRGVGGPSQQVMTPQGRGTV PTQY
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQY 168
Score = 23.1 bits (48), Expect(2) = 5e-69
Identities = 16/61 (26%), Positives = 17/61 (27%)
Frame = +1
Query: 643 PNPVPTWPSRSSPAYGPRSPPSRHDGPTSWYEASHGSPHGNPPWTRNSNGHAPTRNAAPS 822
P P P G +PP P G P G PP G P P
Sbjct: 165 PTQYPPGRGTPPPPVGRATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPP 224
Query: 823 P 825
P
Sbjct: 225 P 225
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,204,584
Number of extensions: 904078
Number of successful extensions: 4134
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4052
Number of HSP's successfully gapped: 8
Length of query: 349
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 247
Effective length of database: 12,553,887
Effective search space: 3100810089
Effective search space used: 3100810089
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012600
(1047 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_937859.1| small nuclear ribonucleoprotein-associated prot... 262 3e-71
Alignment gi|NP_003082.1| small nuclear ribonucleoprotein-associated prot... 262 3e-71
Alignment gi|NP_073719.1| small nuclear ribonucleoprotein-associated prot... 257 5e-69
Alignment gi|NP_073718.1| small nuclear ribonucleoprotein-associated prot... 257 5e-69
Alignment gi|NP_073717.1| small nuclear ribonucleoprotein-associated prot... 257 5e-69
Alignment gi|NP_073716.1| small nuclear ribonucleoprotein-associated prot... 257 5e-69
Alignment gi|NP_003088.1| small nuclear ribonucleoprotein-associated prot... 257 5e-69
>ref|NP_937859.1| small nuclear ribonucleoprotein-associated proteins B and B'
isoform B' [Homo sapiens].
Length = 240
Score = 262 bits (669), Expect(2) = 3e-71
Identities = 134/168 (79%), Positives = 134/168 (79%)
Frame = +2
Query: 152 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 331
MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 332 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLXXXXXXXXXXXXXXXXXXXXVPM 511
REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPL VPM
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 512 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVXXXXXXXXXXXXXXPTQY 655
PQAPAGLAGPVRGVGGPSQQVMTPQGRGTV PTQY
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQY 168
Score = 26.2 bits (56), Expect(2) = 3e-71
Identities = 17/61 (27%), Positives = 18/61 (29%)
Frame = +1
Query: 643 PNPVPTWPSRSSPAYGPRSPPSRHDGPTSWYEASHGSPHGNPPWTRNSNGHAPTRNAAPS 822
P P P G +PP GP G P G PP G P P
Sbjct: 165 PTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPP 224
Query: 823 P 825
P
Sbjct: 225 P 225
>ref|NP_003082.1| small nuclear ribonucleoprotein-associated proteins B and B'
isoform B [Homo sapiens].
Length = 231
Score = 262 bits (669), Expect(2) = 3e-71
Identities = 134/168 (79%), Positives = 134/168 (79%)
Frame = +2
Query: 152 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 331
MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 332 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLXXXXXXXXXXXXXXXXXXXXVPM 511
REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPL VPM
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 512 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVXXXXXXXXXXXXXXPTQY 655
PQAPAGLAGPVRGVGGPSQQVMTPQGRGTV PTQY
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQY 168
Score = 26.2 bits (56), Expect(2) = 3e-71
Identities = 17/61 (27%), Positives = 18/61 (29%)
Frame = +1
Query: 643 PNPVPTWPSRSSPAYGPRSPPSRHDGPTSWYEASHGSPHGNPPWTRNSNGHAPTRNAAPS 822
P P P G +PP GP G P G PP G P P
Sbjct: 165 PTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPP 224
Query: 823 P 825
P
Sbjct: 225 P 225
>ref|NP_073719.1| small nuclear ribonucleoprotein-associated protein N [Homo
sapiens].
Length = 240
Score = 257 bits (657), Expect(2) = 5e-69
Identities = 131/168 (77%), Positives = 133/168 (79%)
Frame = +2
Query: 152 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 331
MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKN+KQ E
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 332 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLXXXXXXXXXXXXXXXXXXXXVPM 511
REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPL VP+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 512 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVXXXXXXXXXXXXXXPTQY 655
PQAPAGLAGPVRGVGGPSQQVMTPQGRGTV PTQY
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQY 168
Score = 23.1 bits (48), Expect(2) = 5e-69
Identities = 16/61 (26%), Positives = 17/61 (27%)
Frame = +1
Query: 643 PNPVPTWPSRSSPAYGPRSPPSRHDGPTSWYEASHGSPHGNPPWTRNSNGHAPTRNAAPS 822
P P P G +PP P G P G PP G P P
Sbjct: 165 PTQYPPGRGTPPPPVGRATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPP 224
Query: 823 P 825
P
Sbjct: 225 P 225
>ref|NP_073718.1| small nuclear ribonucleoprotein-associated protein N [Homo
sapiens].
Length = 240
Score = 257 bits (657), Expect(2) = 5e-69
Identities = 131/168 (77%), Positives = 133/168 (79%)
Frame = +2
Query: 152 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 331
MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKN+KQ E
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 332 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLXXXXXXXXXXXXXXXXXXXXVPM 511
REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPL VP+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 512 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVXXXXXXXXXXXXXXPTQY 655
PQAPAGLAGPVRGVGGPSQQVMTPQGRGTV PTQY
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQY 168
Score = 23.1 bits (48), Expect(2) = 5e-69
Identities = 16/61 (26%), Positives = 17/61 (27%)
Frame = +1
Query: 643 PNPVPTWPSRSSPAYGPRSPPSRHDGPTSWYEASHGSPHGNPPWTRNSNGHAPTRNAAPS 822
P P P G +PP P G P G PP G P P
Sbjct: 165 PTQYPPGRGTPPPPVGRATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPP 224
Query: 823 P 825
P
Sbjct: 225 P 225
>ref|NP_073717.1| small nuclear ribonucleoprotein-associated protein N [Homo
sapiens].
Length = 240
Score = 257 bits (657), Expect(2) = 5e-69
Identities = 131/168 (77%), Positives = 133/168 (79%)
Frame = +2
Query: 152 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 331
MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKN+KQ E
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 332 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLXXXXXXXXXXXXXXXXXXXXVPM 511
REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPL VP+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 512 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVXXXXXXXXXXXXXXPTQY 655
PQAPAGLAGPVRGVGGPSQQVMTPQGRGTV PTQY
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQY 168
Score = 23.1 bits (48), Expect(2) = 5e-69
Identities = 16/61 (26%), Positives = 17/61 (27%)
Frame = +1
Query: 643 PNPVPTWPSRSSPAYGPRSPPSRHDGPTSWYEASHGSPHGNPPWTRNSNGHAPTRNAAPS 822
P P P G +PP P G P G PP G P P
Sbjct: 165 PTQYPPGRGTPPPPVGRATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPP 224
Query: 823 P 825
P
Sbjct: 225 P 225
>ref|NP_073716.1| small nuclear ribonucleoprotein-associated protein N [Homo
sapiens].
Length = 240
Score = 257 bits (657), Expect(2) = 5e-69
Identities = 131/168 (77%), Positives = 133/168 (79%)
Frame = +2
Query: 152 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 331
MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKN+KQ E
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 332 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLXXXXXXXXXXXXXXXXXXXXVPM 511
REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPL VP+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 512 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVXXXXXXXXXXXXXXPTQY 655
PQAPAGLAGPVRGVGGPSQQVMTPQGRGTV PTQY
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQY 168
Score = 23.1 bits (48), Expect(2) = 5e-69
Identities = 16/61 (26%), Positives = 17/61 (27%)
Frame = +1
Query: 643 PNPVPTWPSRSSPAYGPRSPPSRHDGPTSWYEASHGSPHGNPPWTRNSNGHAPTRNAAPS 822
P P P G +PP P G P G PP G P P
Sbjct: 165 PTQYPPGRGTPPPPVGRATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPP 224
Query: 823 P 825
P
Sbjct: 225 P 225
>ref|NP_003088.1| small nuclear ribonucleoprotein-associated protein N [Homo
sapiens].
Length = 240
Score = 257 bits (657), Expect(2) = 5e-69
Identities = 131/168 (77%), Positives = 133/168 (79%)
Frame = +2
Query: 152 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 331
MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKN+KQ E
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 332 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLXXXXXXXXXXXXXXXXXXXXVPM 511
REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPL VP+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 512 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVXXXXXXXXXXXXXXPTQY 655
PQAPAGLAGPVRGVGGPSQQVMTPQGRGTV PTQY
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQY 168
Score = 23.1 bits (48), Expect(2) = 5e-69
Identities = 16/61 (26%), Positives = 17/61 (27%)
Frame = +1
Query: 643 PNPVPTWPSRSSPAYGPRSPPSRHDGPTSWYEASHGSPHGNPPWTRNSNGHAPTRNAAPS 822
P P P G +PP P G P G PP G P P
Sbjct: 165 PTQYPPGRGTPPPPVGRATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPP 224
Query: 823 P 825
P
Sbjct: 225 P 225
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,481,976
Number of extensions: 1109427
Number of successful extensions: 5237
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 5154
Number of HSP's successfully gapped: 14
Length of query: 349
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 246
Effective length of database: 14,901,872
Effective search space: 3665860512
Effective search space used: 3665860512
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012600
(1047 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 1229 0.0
Sscrofa_Chr17 363 1e-97
gb|GL896379.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 184 7e-44
>Sscrofa_Chr13
|| Length = 218635234
Score = 1229 bits (620), Expect = 0.0
Identities = 828/901 (91%), Gaps = 14/901 (1%)
Strand = Plus / Plus
Query: 95 gtctaggcctctaccgaggcgaatccggcgggaatcggagccatcagaaccgccaccatg 154
||||||||||||||| |||| ||||||| || |||| ||||||||||||| |||||| ||
Sbjct: 168177044 gtctaggcctctaccaaggcaaatccggtggaaatcagagccatcagaactgccaccgtg 168177103
Query: 155 actgtgggtaagagcagcaagatgctgcagcacatcgactacaggatgaggtgcatcctg 214
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 168177104 actgtgggcaagagcagcaagatgctgaagcacatcgactacaggatgaggtgcatcctg 168177163
Query: 215 caagacggccgtatcttcattggcacctttaaagcttttgacaagcatatgaatttgatc 274
|||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 168177164 caagacagctgtatcttcattagcacctttaaagcttttgacaagcatatgaatttgatc 168177223
Query: 275 ctctgtgactgtgacgagttcagaaagatcaaaccaaagaactcaaaacaagcggagaga 334
|||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||
Sbjct: 168177224 ctctgtgactgtgatgagttcaggaagatcaaaccaaagaactcaaaacaagaggagaga 168177283
Query: 335 gaagagaagcgagtccttggtctggtgctacttcgaggggagaacctggtctcaatgacg 394
|||| | |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 168177284 gaag-----caagtcctcggtctggtgctacttcgaggggagaacctggtctcaatgaca 168177338
Query: 395 gtagagggaccacctcccaaagataccggcattgcccgagtgccactagctggagctgct 454
||||||||||||||||||||||||||| | |||||| |||||| ||||||||
Sbjct: 168177339 gtagagggaccacctcccaaagataccagtgttgccctagtgccgctagctgg------- 168177391
Query: 455 gggggcccagggattggcagagctgctggcaggggaatcccagctggtgttcctatgccc 514
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 168177392 --gggcccagggattggcagagctgctgtcaggggaatcccagccaatgttcctatgccc 168177449
Query: 515 caggctcctgcaggacttgccgggccggtccgtggggttggtgggccatcccaacaggtg 574
|||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||
Sbjct: 168177450 caggctcctgcaggacttgctgggccagtctgtggggttggtgggccatcccaacaggtg 168177509
Query: 575 atgaccccgcaaggaagaggcactgttgcagcagctgcagctgctgccacagccagtatt 634
|| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 168177510 attaccctgcaaggaagaggcactgttgcagcagctgcagctgctgctacagccagtatt 168177569
Query: 635 gcaggggccccaacccagtacccacctggccgagcaggtcctcccccgcctatgggccga 694
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 168177570 gcaggggccccaacccagtacccacctggccgagcaggtcctccccaacctatgggccga 168177629
Query: 695 ggagnnnnnnntccaggcatgatgggcccacctcctggtatgaggcctcccatgggtccc 754
|||| ||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 168177630 ggagcaccccctccaggcatgatgggcccaactcctggtatgaggcctcctatgggtccc 168177689
Query: 755 cccatgggaatcccccctggacgaggaactccaatgggcatgcccccacccggaatgcgg 814
|| |||||||| |||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 168177690 ccagtgggaatcacccctggaagaggaactccaatgggcatgcccccacccgccatgcgg 168177749
Query: 815 ccccctcccccagggatgcgaggccttctttgaccttggccacagaattatggaagtagc 874
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 168177750 ccccctcccccagggatacgaggccttctttgaccttggccacagagttatggaagtagc 168177809
Query: 875 tccacagaggcgtgggcccgatcccccagggccgcgttaccacacctgtttgtttgttaa 934
||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 168177810 tccacagaggcatgggcctgatcccccagggccatgttaccacacctgtttgtttgttaa 168177869
Query: 935 gccgttgttccgccggagtctcaccggattgtctggtttcccttacagggccccctcccc 994
||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168177870 gccattgttcccctggagtctcaccggattgtctggtttcccttacagggccccctcccc 168177929
Query: 995 c 995
|
Sbjct: 168177930 c 168177930
>Sscrofa_Chr17
|| Length = 69701581
Score = 363 bits (183), Expect = 1e-97
Identities = 209/215 (97%), Gaps = 2/215 (0%)
Strand = Plus / Plus
Query: 835 aggccttctttgaccttggccacagaattatggaagtagctccacagaggcgtgggcccg 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37511852 aggccttctttgaccttggccacagaattatggaagtagctccacagaggcgtgggcccg 37511911
Query: 895 atcccccagggccgcgttaccacacctgtttgtttgttaagccgttgttccgccggagtc 954
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37511912 accccccagggccacgttaccacacctgtttgtttgttaagccgttgttccgccggagtc 37511971
Query: 955 tcaccggattgtctggtttcccttacagggccccctcccccgggatggcgcccacc-agg 1013
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 37511972 tcaccggattgtctggtttcccttacagggccccctcccccgggaatgcgcccaccaagg 37512031
Query: 1014 ccctagactcatcttgaccct-ctcagctccctgc 1047
||||||||||||||||||||| |||||||||||||
Sbjct: 37512032 ccctagactcatcttgaccctcctcagctccctgc 37512066
Score = 363 bits (183), Expect = 1e-97
Identities = 209/215 (97%), Gaps = 2/215 (0%)
Strand = Plus / Plus
Query: 835 aggccttctttgaccttggccacagaattatggaagtagctccacagaggcgtgggcccg 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37590973 aggccttctttgaccttggccacagaattatggaagtagctccacagaggcgtgggcccg 37591032
Query: 895 atcccccagggccgcgttaccacacctgtttgtttgttaagccgttgttccgccggagtc 954
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37591033 accccccagggccacgttaccacacctgtttgtttgttaagccgttgttccgccggagtc 37591092
Query: 955 tcaccggattgtctggtttcccttacagggccccctcccccgggatggcgcccacc-agg 1013
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 37591093 tcaccggattgtctggtttcccttacagggccccctcccccgggaatgcgcccaccaagg 37591152
Query: 1014 ccctagactcatcttgaccct-ctcagctccctgc 1047
||||||||||||||||||||| |||||||||||||
Sbjct: 37591153 ccctagactcatcttgaccctcctcagctccctgc 37591187
Score = 307 bits (155), Expect = 7e-81
Identities = 155/155 (100%)
Strand = Plus / Minus
Query: 419 accggcattgcccgagtgccactagctggagctgctgggggcccagggattggcagagct 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37462720 accggcattgcccgagtgccactagctggagctgctgggggcccagggattggcagagct 37462661
Query: 479 gctggcaggggaatcccagctggtgttcctatgccccaggctcctgcaggacttgccggg 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37462660 gctggcaggggaatcccagctggtgttcctatgccccaggctcctgcaggacttgccggg 37462601
Query: 539 ccggtccgtggggttggtgggccatcccaacaggt 573
|||||||||||||||||||||||||||||||||||
Sbjct: 37462600 ccggtccgtggggttggtgggccatcccaacaggt 37462566
Score = 303 bits (153), Expect = 1e-79
Identities = 153/153 (100%)
Strand = Plus / Minus
Query: 154 gactgtgggtaagagcagcaagatgctgcagcacatcgactacaggatgaggtgcatcct 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37466466 gactgtgggtaagagcagcaagatgctgcagcacatcgactacaggatgaggtgcatcct 37466407
Query: 214 gcaagacggccgtatcttcattggcacctttaaagcttttgacaagcatatgaatttgat 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37466406 gcaagacggccgtatcttcattggcacctttaaagcttttgacaagcatatgaatttgat 37466347
Query: 274 cctctgtgactgtgacgagttcagaaagatcaa 306
|||||||||||||||||||||||||||||||||
Sbjct: 37466346 cctctgtgactgtgacgagttcagaaagatcaa 37466314
Score = 258 bits (130), Expect = 5e-66
Identities = 130/130 (100%)
Strand = Plus / Plus
Query: 708 caggcatgatgggcccacctcctggtatgaggcctcccatgggtccccccatgggaatcc 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37511049 caggcatgatgggcccacctcctggtatgaggcctcccatgggtccccccatgggaatcc 37511108
Query: 768 cccctggacgaggaactccaatgggcatgcccccacccggaatgcggccccctcccccag 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37511109 cccctggacgaggaactccaatgggcatgcccccacccggaatgcggccccctcccccag 37511168
Query: 828 ggatgcgagg 837
||||||||||
Sbjct: 37511169 ggatgcgagg 37511178
Score = 234 bits (118), Expect = 8e-59
Identities = 118/118 (100%)
Strand = Plus / Minus
Query: 37 cattttgtcagtggtcgtatttccggtaacggcggcgggaagcggtctacaggcgggcgt 96
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37468889 cattttgtcagtggtcgtatttccggtaacggcggcgggaagcggtctacaggcgggcgt 37468830
Query: 97 ctaggcctctaccgaggcgaatccggcgggaatcggagccatcagaaccgccaccatg 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37468829 ctaggcctctaccgaggcgaatccggcgggaatcggagccatcagaaccgccaccatg 37468772
Score = 222 bits (112), Expect = 3e-55
Identities = 112/112 (100%)
Strand = Plus / Minus
Query: 307 accaaagaactcaaaacaagcggagagagaagagaagcgagtccttggtctggtgctact 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37464518 accaaagaactcaaaacaagcggagagagaagagaagcgagtccttggtctggtgctact 37464459
Query: 367 tcgaggggagaacctggtctcaatgacggtagagggaccacctcccaaagat 418
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37464458 tcgaggggagaacctggtctcaatgacggtagagggaccacctcccaaagat 37464407
Score = 67.9 bits (34), Expect = 1e-08
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 665 cgagcaggtcctcccccgcctatgggccgaggag 698
||||||||||||||||||||||||||||||||||
Sbjct: 37510689 cgagcaggtcctcccccgcctatgggccgaggag 37510722
>gb|GL896379.1| Sus scrofa unplaced genomic scaffold chrU_scaffold725
Length = 48732
Score = 184 bits (93), Expect = 7e-44
Identities = 135/149 (90%)
Strand = Plus / Minus
Query: 158 gtgggtaagagcagcaagatgctgcagcacatcgactacaggatgaggtgcatcctgcaa 217
||||| |||||||||||||||||||||||||| ||||| || ||||| || |||||||||
Sbjct: 29173 gtgggaaagagcagcaagatgctgcagcacattgactatagaatgagatgtatcctgcaa 29114
Query: 218 gacggccgtatcttcattggcacctttaaagcttttgacaagcatatgaatttgatcctc 277
|| ||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 29113 gatggccggatcttcattggcacctttaaggcttttgacaagcatatgaacttgatcctc 29054
Query: 278 tgtgactgtgacgagttcagaaagatcaa 306
||||| ||||| || ||||| ||||||||
Sbjct: 29053 tgtgattgtgatgaattcaggaagatcaa 29025
Score = 101 bits (51), Expect = 8e-19
Identities = 117/139 (84%)
Strand = Plus / Minus
Query: 437 ccactagctggagctgctgggggcccagggattggcagagctgctggcaggggaatccca 496
||||| ||||||||||| || ||||| ||| ||||||| || |||||||| || | |||
Sbjct: 25520 ccacttgctggagctgcaggaggccctggggttggcagggcagctggcagaggtgtacca 25461
Query: 497 gctggtgttcctatgccccaggctcctgcaggacttgccgggccggtccgtggggttggt 556
||||||||||| || |||||||| ||||| ||| | || || || ||||| ||||||||
Sbjct: 25460 gctggtgttccaattccccaggcacctgctggattagcaggtcctgtccgaggggttggg 25401
Query: 557 gggccatcccaacaggtga 575
|||||||||||||||||||
Sbjct: 25400 gggccatcccaacaggtga 25382
Score = 73.8 bits (37), Expect = 2e-10
Identities = 82/97 (84%)
Strand = Plus / Minus
Query: 570 aggtgatgaccccgcaaggaagaggcactgttgcagcagctgcagctgctgccacagcca 629
|||| |||||||| || |||||||||||||| || || ||||||| |||||| || ||||
Sbjct: 24981 aggtaatgaccccacagggaagaggcactgtagctgctgctgcagttgctgctactgcca 24922
Query: 630 gtattgcaggggccccaacccagtacccacctggccg 666
| ||||| || |||||||| ||||| ||||| |||||
Sbjct: 24921 gcattgctggagccccaactcagtatccaccaggccg 24885
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,065,831
Number of extensions: 392
Number of successful extensions: 392
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 389
Number of HSP's successfully gapped: 13
Length of query: 1047
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1026
Effective length of database: 2,808,413,156
Effective search space: 2881431898056
Effective search space used: 2881431898056
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)