Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012602
(1546 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_546539.2| PREDICTED: similar to Acetyl-CoA acetyltransfer... 675 0.0
Alignment gi|XP_541180.2| PREDICTED: similar to Acetyl-CoA acetyltransfer... 276 5e-74
Alignment gi|XP_534222.2| PREDICTED: similar to 3-ketoacyl-CoA thiolase, ... 175 1e-43
Alignment gi|XP_849696.1| PREDICTED: similar to Trifunctional enzyme beta... 172 1e-42
Alignment gi|XP_865227.1| PREDICTED: similar to hydroxyacyl dehydrogenase... 164 2e-40
Alignment gi|XP_538166.1| PREDICTED: similar to hydroxyacyl dehydrogenase... 164 2e-40
Alignment gi|XP_547690.2| PREDICTED: similar to acetyl-coenzyme A acyltra... 154 2e-37
Alignment gi|XP_859591.1| PREDICTED: similar to Trifunctional enzyme beta... 149 5e-36
Alignment gi|XP_865177.1| PREDICTED: similar to hydroxyacyl-Coenzyme A de... 143 4e-34
Alignment gi|XP_859620.1| PREDICTED: similar to hydroxyacyl dehydrogenase... 142 9e-34
>ref|XP_546539.2| PREDICTED: similar to Acetyl-CoA acetyltransferase, mitochondrial
precursor (Acetoacetyl-CoA thiolase) (T2) [Canis
familiaris].
Length = 433
Score = 675 bits (1742), Expect = 0.0
Identities = 341/413 (82%), Positives = 363/413 (87%)
Frame = +1
Query: 94 RSLLLRRRMQEIRYVERSYVSKPTLNEVVIVSATRTPIGSFLGSLSSLPATKLGSIAIQG 273
R+ L+RR Q +RYVERSYVSKPTLNEVVIVSA RTPIGSFLGSLSSLPATKLGSIAIQG
Sbjct: 21 RARLVRRVCQAVRYVERSYVSKPTLNEVVIVSAARTPIGSFLGSLSSLPATKLGSIAIQG 80
Query: 274 AIEKAGIPKEEVKEVYMGNVLQGGEGQAPTRQAVLGAGLPISTPCTTINKVCASGMKAIM 453
IEKAGIPKEEVKE YMGNVLQGGEGQAPTRQA LGAGLPISTPCTT+NKVCASGMKAIM
Sbjct: 81 VIEKAGIPKEEVKEAYMGNVLQGGEGQAPTRQAALGAGLPISTPCTTVNKVCASGMKAIM 140
Query: 454 MASQNLMCGHQDVMVAGGMESMSNVPYVMDRGTTPYGGVKLEDLIVKDGLTDVYNKIHMG 633
MASQ+LMCGHQDVMVAGGMESMSNVPYVM RG TPYGGVKLEDLIVKDGLTDVYNKIHMG
Sbjct: 141 MASQSLMCGHQDVMVAGGMESMSNVPYVMSRGATPYGGVKLEDLIVKDGLTDVYNKIHMG 200
Query: 634 NCAENTAKKLNIPRDEQDTYAINSYTRSKAAWEAGKFRSEVIPVTISVKGKPDTVVKEDE 813
NCAENTAKK+NI R+EQDTYA++SYTRSKAAWEAG+F SEVIPVT++ KGKPD +V EDE
Sbjct: 201 NCAENTAKKMNITREEQDTYALSSYTRSKAAWEAGRFGSEVIPVTVTTKGKPDVLVTEDE 260
Query: 814 EYKRVDFNKVPKLKTVFQKENGTVTAANASTLNDGXXXXXXXXXXXXKRLNVKPLXXXXX 993
EYKRVDF+KVPKLKTVFQKENGTVTAANASTLNDG +RL VKPL
Sbjct: 261 EYKRVDFSKVPKLKTVFQKENGTVTAANASTLNDGAAAVVLMTADAARRLKVKPLARVAA 320
Query: 994 XXXXXXXXXXXXXXXXYAVPKVLKDAGLKKEDVTMWEVNEAFSVVVLANIKMLEIDPQKV 1173
YAVPKVL+DAGLKKED+TMWEVNEAFS+VVLANIKML++DPQKV
Sbjct: 321 FADAAVEPIDFPVAPAYAVPKVLRDAGLKKEDITMWEVNEAFSLVVLANIKMLDLDPQKV 380
Query: 1174 NINGGAVSLGHPIGMSGARIVVHLAHALKQGEYGLASICNGGGGASAMLIQKL 1332
N+NGGAVSLGHPIGMSGARIVVHL HALKQGEYGLASICNGGGGASA+LIQKL
Sbjct: 381 NMNGGAVSLGHPIGMSGARIVVHLVHALKQGEYGLASICNGGGGASALLIQKL 433
>ref|XP_541180.2| PREDICTED: similar to Acetyl-CoA acetyltransferase, cytosolic
(Cytosolic acetoacetyl-CoA thiolase) (Acetyl CoA
transferase-like protein) [Canis familiaris].
Length = 397
Score = 276 bits (705), Expect = 5e-74
Identities = 162/387 (41%), Positives = 229/387 (59%), Gaps = 5/387 (1%)
Frame = +1
Query: 175 VVIVSATRTPIGSFLGSLSSLPATKLGSIAIQGAIEKAGIPKEEVKEVYMGNVLQGGEGQ 354
VVIVSA RTPIGSF G+L+++PA LGS I+ + +A + EEV EV G+VL G GQ
Sbjct: 8 VVIVSAARTPIGSFNGALATVPAHDLGSSVIKEVLRRAAVAPEEVSEVIFGHVLAAGCGQ 67
Query: 355 APTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQNLMCGHQDVMVAGGMESMSNVPY 534
P RQA +GAG+P + P + VC SG+KA+ +A+Q++ G ++VAGGMESMS P+
Sbjct: 68 NPVRQASMGAGIPYAVPAWSCQMVCGSGLKAVCLAAQSIGIGDSSIVVAGGMESMSKAPH 127
Query: 535 VMD-RGTTPYGGVKLEDLIVKDGLTDVYNKIHMGNCAENTAKKLNIPRDEQDTYAINSYT 711
++ R G + L D I+ DGLTD ++ HMG AEN AKK + R++QD A+ S
Sbjct: 128 LVHLRAGVKIGEMPLADSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDKCAVLSQN 187
Query: 712 RSKAAWEAGKFRSEVIPVTISVKGKPDTVVKEDEEYKR-VDFNKVPKLKTVFQKE-NGTV 885
R+++A +AG F E++PV +S + K T VK DE + + V KLK F + GTV
Sbjct: 188 RTESAQKAGYFDKEIVPVFVSSR-KGLTEVKTDEFPRHGSNIEAVSKLKPYFLTDGTGTV 246
Query: 886 TAANASTLNDGXXXXXXXXXXXXKRLNVKPLXXXXXXXXXXXXXXXXXXXXXYAVPKVLK 1065
T ANAS +NDG + PL A+ + +
Sbjct: 247 TPANASGINDGAAAVVLMKKSEAANRGLTPLAQIVSWSQVGVEPSIMGTGPIPAIKQAVA 306
Query: 1066 DAGLKKEDVTMWEVNEAFSVVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSGARIVVHL 1245
AG EDV ++E+NEAF+ + +A K L ++P+KVNI GGA++LGHP+G SG RI+V L
Sbjct: 307 KAGWSLEDVDIFEINEAFAALSVAITKELGLNPEKVNIQGGAIALGHPLGASGCRILVTL 366
Query: 1246 AHAL--KQGEYGLASICNGGGGASAML 1320
H + K G G+A++C GGG A+ +L
Sbjct: 367 LHTMERKGGHRGVAALCIGGGMANMVL 393
>ref|XP_534222.2| PREDICTED: similar to 3-ketoacyl-CoA thiolase, peroxisomal precursor
(Beta-ketothiolase) (Acetyl-CoA acyltransferase)
(Peroxisomal 3-oxoacyl-CoA thiolase) isoform 1 [Canis
familiaris].
Length = 426
Score = 175 bits (443), Expect = 1e-43
Identities = 126/393 (32%), Positives = 203/393 (51%), Gaps = 10/393 (2%)
Frame = +1
Query: 169 NEVVIVSATRTPIG-SFLGSLSSLPATKLGSIAIQGAIEKAGIPKEEVKEVYMGNVLQGG 345
++VV+V RT IG G +L S + ++ + ++ ++ +GNVLQ G
Sbjct: 38 DDVVVVHGRRTAIGRGGRGGFKDTTPDELLSAVMTAVLQDVRLSPAQLGDICVGNVLQPG 97
Query: 346 EGQAPTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQNLMCGHQDVMVAGGMESMSN 525
G R A + +P + P +T+N+ C+SG++A+ + + G D+ +A G+ESMS
Sbjct: 98 AGAIMARIAQFLSDIPETVPLSTVNRQCSSGLQALANIAGGIRNGSYDIGMACGVESMS- 156
Query: 526 VPYVMDRGTTPYGGVKLEDLIVKDGLTDVYNKIHMGNCAENTAKKLNIPRDEQDTYAINS 705
+ DRG G L+ K D I MG +EN A++ I R++QDT+A+ S
Sbjct: 157 ---LADRGNP---GNITSRLVEKKKARDCL--IPMGITSENVAERFGISREKQDTFALAS 208
Query: 706 YTRSKAAWEAGKFRSEVIPVTISV---KGKPDTV-VKEDEEYK-RVDFNKVPKLKTVFQK 870
++ A G F++E++PVT +V KG + V +DE + + KLK F K
Sbjct: 209 QQKAARAQSKGCFQAEIVPVTTTVHDDKGAERIITVAQDEGIRPNTTMEGLAKLKPAF-K 267
Query: 871 ENGTVTAANASTLNDGXXXXXXXXXXXXKRLNVKPLXXXXXXXXXXXXXXXXXXXXXYAV 1050
+ G+ TA N+S ++DG + L + L YA+
Sbjct: 268 QGGSTTAGNSSQVSDGAAALLLARRSKAEELGLPVLGVLRSYAVVGVPPDIMGIGPAYAI 327
Query: 1051 PKVLKDAGLKKEDVTMWEVNEAFSVVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSGAR 1230
P L+ AGL +DV ++E+NEAF+ + ++ L + P+KVN GGAV+LGHP+G +GAR
Sbjct: 328 PVALQKAGLTVKDVDIFEINEAFASQAVYCVEKLGLPPEKVNPLGGAVALGHPLGCTGAR 387
Query: 1231 IVVHLAHALK---QGEYGLASICNGGG-GASAM 1317
V+ L + LK + YG+ S+C G G GA+A+
Sbjct: 388 QVITLLNELKRRGKRAYGVVSMCIGTGMGAAAV 420
>ref|XP_849696.1| PREDICTED: similar to Trifunctional enzyme beta subunit,
mitochondrial precursor (TP-beta) isoform 1 [Canis
familiaris].
Length = 475
Score = 172 bits (435), Expect = 1e-42
Identities = 132/431 (30%), Positives = 198/431 (45%), Gaps = 39/431 (9%)
Frame = +1
Query: 151 VSKPTLNEVVIVSATRTPIGSFLGSLSSLPATKLGSIAIQGAIEKAGIPKEEVKEVYMGN 330
++KP + +V+V R P S L L A+ G + + +PK+ V + G
Sbjct: 47 LAKPNIRNIVVVDGVRIPFLQSGTSYKDLMPHDLARAALSGLLHRTNVPKDVVDYIIFGT 106
Query: 331 VLQGGEGQAPTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQNLMCGHQDVMVAGGM 510
V+Q + R+A LGAG TP T+ C S +A+ + G DV+VAGG+
Sbjct: 107 VIQEVKTSNVAREAALGAGFSDKTPAHTVTMACISANQAMTTGVGLIASGQCDVVVAGGV 166
Query: 511 ESMSNVPY---------VMDRGTTPYGGVKLEDLIVKDGLTDVYNKIH----------MG 633
E MS+VP ++D G +L L+ K L + ++ MG
Sbjct: 167 ELMSDVPIRHSRKMRKMMLDLNKAKTLGQRLS-LLSKFRLNFLSPELPAVAEFSTSETMG 225
Query: 634 NCAENTAKKLNIPRDEQDTYAINSYTRSKAAWEAGKFRSEVIPVTISVKGKPDTVVKEDE 813
+ A+ A + R +QD YA+ S++ +K A + G S+++P V GK DTV K D
Sbjct: 226 HSADRLAAAFAVSRADQDEYALRSHSLAKKAQDEGLL-SDIVP--FKVPGK-DTVTK-DN 280
Query: 814 EYKRVDFNKVPKLKTVFQKENGTVTAANASTLNDGXXXXXXXXXXXXKRLNVKP-LXXXX 990
+ ++ KLK F K GTVTAAN+S L DG + KP
Sbjct: 281 GIRPSSLEQMAKLKPAFIKPYGTVTAANSSFLTDGASAMLIMAEEKALAMGYKPKAYLRD 340
Query: 991 XXXXXXXXXXXXXXXXXYAVPKVLKDAGLKKEDVTMWEVNEAFSVVVLANIKMLEID--- 1161
YA PKVL+ AGL D+ +E +EAFS +LAN K ++ D
Sbjct: 341 FVYVSQDPKDQLLLGPTYATPKVLEKAGLTLNDIDAFEFHEAFSGQILANFKAMDSDWFA 400
Query: 1162 --------------PQKVNINGGAVSLGHPIGMSGARIVVHLAHALKQ--GEYGLASICN 1293
+K N GG++SLGHP G +G R+V+ A+ L++ G+YGL + C
Sbjct: 401 QNYMGRKTKVGSPPLEKFNNWGGSLSLGHPFGATGCRLVMAAANRLRKEGGQYGLVAACA 460
Query: 1294 GGGGASAMLIQ 1326
GG AM+++
Sbjct: 461 AGGQGHAMIVE 471
>ref|XP_865227.1| PREDICTED: similar to hydroxyacyl dehydrogenase, subunit B isoform 4
[Canis familiaris].
Length = 444
Score = 164 bits (416), Expect = 2e-40
Identities = 129/431 (29%), Positives = 196/431 (45%), Gaps = 39/431 (9%)
Frame = +1
Query: 151 VSKPTLNEVVIVSATRTPIGSFLGSLSSLPATKLGSIAIQGAIEKAGIPKEEVKEVYMGN 330
++KP + +V+V R P S L L A G + + + K+ V + G
Sbjct: 16 LAKPNIRNIVVVDGVRIPFLQSGTSYKDLMPHDLARAAFSGLLHRTNVSKDVVDYIIFGT 75
Query: 331 VLQGGEGQAPTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQNLMCGHQDVMVAGGM 510
V+Q + R+A LGAG TP T+ C S +A++ + G DV+VAGG+
Sbjct: 76 VIQEVKTSNVAREAALGAGFSDKTPAHTVTMACISANQAMITGVGLIASGQCDVVVAGGV 135
Query: 511 ESMSNVPY---------VMDRGTTPYGGVKLEDLIVKDGLTDVYNKIH----------MG 633
E MS+VP ++D G +L L+ K L + ++ MG
Sbjct: 136 ELMSDVPIRHSRKIRKMMLDLNKAKTLGQRLS-LLSKFRLNFLSPELPAVAEFSTSETMG 194
Query: 634 NCAENTAKKLNIPRDEQDTYAINSYTRSKAAWEAGKFRSEVIPVTISVKGKPDTVVKEDE 813
+ A+ A + R +QD YA+ S++ +K A + G S+++P V GK DTV K D
Sbjct: 195 HSADRLAAAFAVSRADQDEYALRSHSLAKKAQDEGLL-SDIVP--FKVPGK-DTVTK-DN 249
Query: 814 EYKRVDFNKVPKLKTVFQKENGTVTAANASTLNDGXXXXXXXXXXXXKRLNVK-PLXXXX 990
+ + ++ KLK F K GTVT AN+S L DG + K
Sbjct: 250 DIRPSSLEQMAKLKPAFIKPYGTVTTANSSFLTDGASAMLIMAEEKALAMGYKLKAYLRD 309
Query: 991 XXXXXXXXXXXXXXXXXYAVPKVLKDAGLKKEDVTMWEVNEAFSVVVLANIKMLEID--- 1161
YA PKVL+ AGL
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012602
(1546 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039540.1| acetyl-CoA acetyltransferase, mitochondrial ... 703 0.0
Alignment gi|NP_001069017.1| acetyl-CoA acetyltransferase, cytosolic [Bos... 270 2e-72
Alignment gi|NP_001030419.1| 3-ketoacyl-CoA thiolase, mitochondrial [Bos ... 224 2e-58
Alignment gi|NP_776761.1| trifunctional enzyme subunit beta, mitochondria... 176 5e-44
Alignment gi|NP_001029491.1| 3-ketoacyl-CoA thiolase, peroxisomal [Bos ta... 176 7e-44
>ref|NP_001039540.1| acetyl-CoA acetyltransferase, mitochondrial precursor [Bos taurus].
Length = 422
Score = 703 bits (1814), Expect = 0.0
Identities = 362/426 (84%), Positives = 378/426 (88%)
Frame = +1
Query: 55 MAVLSVLVRGACGRSLLLRRRMQEIRYVERSYVSKPTLNEVVIVSATRTPIGSFLGSLSS 234
M VL+ L+R R LL+RR+QEIRY ERSYVSKPTLNEVVIVSA RTPIGSFLGSLSS
Sbjct: 1 MPVLAALLR----RGPLLQRRVQEIRYAERSYVSKPTLNEVVIVSAIRTPIGSFLGSLSS 56
Query: 235 LPATKLGSIAIQGAIEKAGIPKEEVKEVYMGNVLQGGEGQAPTRQAVLGAGLPISTPCTT 414
LPATKLGSIAIQGAIEKAGIPKEEVKE YMGNVLQGGEGQAPTRQAVLGAGLPISTPCTT
Sbjct: 57 LPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQGGEGQAPTRQAVLGAGLPISTPCTT 116
Query: 415 INKVCASGMKAIMMASQNLMCGHQDVMVAGGMESMSNVPYVMDRGTTPYGGVKLEDLIVK 594
INKVCASGMKAIMMASQNLMCGHQDVMVAGGMESMSNVPYVM+RG TPYGGVKLEDLIVK
Sbjct: 117 INKVCASGMKAIMMASQNLMCGHQDVMVAGGMESMSNVPYVMNRGATPYGGVKLEDLIVK 176
Query: 595 DGLTDVYNKIHMGNCAENTAKKLNIPRDEQDTYAINSYTRSKAAWEAGKFRSEVIPVTIS 774
DGLTDVYNKIHMGNCAENTAKKLNI R+EQDTYA+NSYTRSKAAWEAG+F +EV+PVTI+
Sbjct: 177 DGLTDVYNKIHMGNCAENTAKKLNITREEQDTYALNSYTRSKAAWEAGRFGNEVVPVTIT 236
Query: 775 VKGKPDTVVKEDEEYKRVDFNKVPKLKTVFQKENGTVTAANASTLNDGXXXXXXXXXXXX 954
VKGKPD VVKEDEEYKRVDF+K+PKLKTVFQ+ENGTVTAANASTLNDG
Sbjct: 237 VKGKPDVVVKEDEEYKRVDFSKIPKLKTVFQRENGTVTAANASTLNDGAAAVVLMTADAA 296
Query: 955 KRLNVKPLXXXXXXXXXXXXXXXXXXXXXYAVPKVLKDAGLKKEDVTMWEVNEAFSVVVL 1134
KRLNVKPL YAVPKVLKDAGLKKED+TMWEVNEAFSVVVL
Sbjct: 297 KRLNVKPLARIAAFADAAVEPIDFPLAPAYAVPKVLKDAGLKKEDITMWEVNEAFSVVVL 356
Query: 1135 ANIKMLEIDPQKVNINGGAVSLGHPIGMSGARIVVHLAHALKQGEYGLASICNGGGGASA 1314
ANIKMLE+DPQKVNINGGAVSLGHPIGMSGARIVVHLAHALKQGEYGLASICNGGGGASA
Sbjct: 357 ANIKMLEMDPQKVNINGGAVSLGHPIGMSGARIVVHLAHALKQGEYGLASICNGGGGASA 416
Query: 1315 MLIQKL 1332
MLIQKL
Sbjct: 417 MLIQKL 422
>ref|NP_001069017.1| acetyl-CoA acetyltransferase, cytosolic [Bos taurus].
Length = 397
Score = 270 bits (691), Expect = 2e-72
Identities = 160/390 (41%), Positives = 226/390 (57%), Gaps = 5/390 (1%)
Frame = +1
Query: 175 VVIVSATRTPIGSFLGSLSSLPATKLGSIAIQGAIEKAGIPKEEVKEVYMGNVLQGGEGQ 354
VVIVSA RT IGSF G+LS++P LGS I+ +++A + EEV EV G+VL G GQ
Sbjct: 8 VVIVSAARTIIGSFNGALSTVPVHDLGSTVIREVLKRAAVAPEEVSEVIFGHVLAAGCGQ 67
Query: 355 APTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQNLMCGHQDVMVAGGMESMSNVPY 534
P RQA +GAG+P S P + +C SG+KA+ +A+Q++ G ++VAGGME+MS P+
Sbjct: 68 NPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQSIRIGDSSIVVAGGMENMSKAPH 127
Query: 535 VMD-RGTTPYGGVKLEDLIVKDGLTDVYNKIHMGNCAENTAKKLNIPRDEQDTYAINSYT 711
++ R G L D I+ DGLTD ++ HMG AEN A++ + R++QD A+ S
Sbjct: 128 LVHLRTGVKIGETPLADSILCDGLTDAFHNYHMGITAENVARQWQVSREDQDKVAVLSQN 187
Query: 712 RSKAAWEAGKFRSEVIPVTISVKGKPDTVVKEDEEYKR-VDFNKVPKLKTVFQKE-NGTV 885
R++ A +AG F E++PV +S K K T VK DE + + V KLK F + GTV
Sbjct: 188 RTEHAQKAGHFDKEIVPVFVSSK-KGLTEVKTDEFPRHGSNMEAVSKLKPCFLMDGTGTV 246
Query: 886 TAANASTLNDGXXXXXXXXXXXXKRLNVKPLXXXXXXXXXXXXXXXXXXXXXYAVPKVLK 1065
T ANAS +NDG + PL A+ + +
Sbjct: 247 TPANASGINDGAAAVVLMKKSEAGNRGLTPLAQIVSWAQAGVEPSIMGIGPIPAIKQAVA 306
Query: 1066 DAGLKKEDVTMWEVNEAFSVVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSGARIVVHL 1245
AG EDV ++E+NEAF+ + +A K L ++P+KVN GGA++LGHP+G SG RI+V L
Sbjct: 307 KAGWSLEDVDVFEINEAFAALSVAIAKELGLNPEKVNTEGGAIALGHPLGASGCRILVTL 366
Query: 1246 AHAL--KQGEYGLASICNGGGGASAMLIQK 1329
H L K G G+A++C GGG AM +Q+
Sbjct: 367 LHTLERKGGHRGVAALCIGGGMGIAMCVQR 396
>ref|NP_001030419.1| 3-ketoacyl-CoA thiolase, mitochondrial [Bos taurus].
Length = 397
Score = 224 bits (571), Expect = 2e-58
Identities = 141/393 (35%), Positives = 202/393 (51%), Gaps = 6/393 (1%)
Frame = +1
Query: 166 LNEVVIVSATRTPIGSFLGSLSSLPATKLGSIAIQGAIEKAGIPKEEVKEVYMGNVLQGG 345
L V IV+A RTP G++ G L T + A + A+ + E V V +GNV+Q
Sbjct: 4 LRGVFIVAAKRTPFGAYGGLLKDFTPTDMAEFAARAALSAGRVSPETVDSVVVGNVMQSS 63
Query: 346 EGQAP-TRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQNLMCGHQDVMVAGGMESMS 522
R L G+P TP TIN++C SG ++I+ Q + +V++ GG ESMS
Sbjct: 64 SDAIYLARHVGLRVGIPKETPAITINRLCGSGFQSIVSGCQEICSRDSEVVLCGGTESMS 123
Query: 523 NVPYVMDR---GTTPYGGVKLEDLIVKDGLTDVYNKIHMGNCAENTAKKLNIPRDEQDTY 693
PY + GT +KLED + GLTD + ++ M AEN A K I R++ D Y
Sbjct: 124 QAPYCVRNIRFGTKLGSELKLEDTLWT-GLTDTHVQMPMAITAENLAVKHQISREDCDRY 182
Query: 694 AINSYTRSKAAWEAGKFRSEVIPVTISVKGKPDTVVKEDEEYKRVDFNKVPKLKTVFQKE 873
A+ S R K A +AG F +E+ PV + + T+ ++ + ++ KL VF+KE
Sbjct: 183 ALQSQQRWKTANDAGYFDNEMAPVEVKTRKGKQTMQVDEHPRPQTTMEQLNKLPPVFKKE 242
Query: 874 NGTVTAANASTLNDGXXXXXXXXXXXXKRLNVKPLXXXXXXXXXXXXXXXXXXXXXYAVP 1053
GTVTA NAS ++DG K+ N PL A+
Sbjct: 243 -GTVTAGNASGVSDGAGAVIIASEDAVKKHNFTPLARIVGYFVSGCDPTIMGIGPVPAIS 301
Query: 1054 KVLKDAGLKKEDVTMWEVNEAFSVVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSGARI 1233
LK GL +D+ + EVNEAF+ LA K L +DP K N+NGGA++LGHP+ SG+RI
Sbjct: 302 GALKKTGLSLKDMDLVEVNEAFAPQYLAVEKSLNLDPSKTNVNGGAIALGHPLAGSGSRI 361
Query: 1234 VVHLAHALKQ--GEYGLASICNGGGGASAMLIQ 1326
HL H L++ G+Y + S C GGG A++I+
Sbjct: 362 TAHLVHELRRRGGKYAVGSACIGGGQGIAVIIE 394
>ref|NP_776761.1| trifunctional enzyme subunit beta, mitochondrial precursor [Bos
taurus].
Length = 475
Score = 176 bits (446), Expect = 5e-44
Identities = 132/431 (30%), Positives = 202/431 (46%), Gaps = 39/431 (9%)
Frame = +1
Query: 151 VSKPTLNEVVIVSATRTPIGSFLGSLSSLPATKLGSIAIQGAIEKAGIPKEEVKEVYMGN 330
++KP + +V+V RTP S L L A+ G + + +PK+ V + G
Sbjct: 47 LAKPNIRNIVVVDGVRTPFLLSGTSYKDLMPHDLARAALSGLLHRTSVPKDVVDYIIFGT 106
Query: 331 VLQGGEGQAPTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQNLMCGHQDVMVAGGM 510
V+Q + R+A LGAG TP T+ C S +A+ A + G DV+VAGG+
Sbjct: 107 VIQEVKTSNVAREAALGAGFSDKTPAHTVTMACISSNQAMTTAVGLIASGQCDVVVAGGV 166
Query: 511 ESMSNVPY---------VMDRGTTPYGGVKLEDLIVK----------DGLTDVYNKIHMG 633
E MS++P ++D +L +I K +++ MG
Sbjct: 167 ELMSDIPIRHSRKMRKMMLDLNKAKTLAQRLS-IISKFRLNFLSPELPAVSEFSTSETMG 225
Query: 634 NCAENTAKKLNIPRDEQDTYAINSYTRSKAAWEAGKFRSEVIPVTISVKGKPDTVVKEDE 813
+ A+ A I R+EQD YA+ S++ +K A + G S+V+P V G+ DTV +D
Sbjct: 226 HSADRLAAAFAISREEQDEYALRSHSLAKKAQDEGLL-SDVVP--FKVPGR-DTVT-QDN 280
Query: 814 EYKRVDFNKVPKLKTVFQKENGTVTAANASTLNDGXXXXXXXXXXXXKRLNVKP-LXXXX 990
+ +++ KLK F K GTVTAAN+S L DG + KP
Sbjct: 281 GIRPSSLDQMAKLKPAFIKPYGTVTAANSSFLTDGASAVLIMAEEKALAMGYKPKAYLRD 340
Query: 991 XXXXXXXXXXXXXXXXXYAVPKVLKDAGLKKEDVTMWEVNEAFSVVVLANIKMLEID--- 1161
YA PKVL+ AGL D+ ++E +EAFS +LAN+K ++ D
Sbjct: 341 FMYVSQDPKDQLLLGPTYATPKVLEKAGLTMNDIDVFEFHEAFSGQILANLKAMDSDWFA 400
Query: 1162 --------------PQKVNINGGAVSLGHPIGMSGARIVVHLAHALKQ--GEYGLASICN 1293
+K N GG++SLGHP G +G R+V+ A+ L++ G+YGL + C
Sbjct: 401 QNYMGRKAKVGLPPLEKFNNWGGSLSLGHPFGATGCRLVMAAANRLRKEGGQYGLVAACA 460
Query: 1294 GGGGASAMLIQ 1326
GG AM+++
Sbjct: 461 AGGQGHAMIVE 471
>ref|NP_001029491.1| 3-ketoacyl-CoA thiolase, peroxisomal [Bos taurus].
Length = 424
Score = 176 bits (445), Expect = 7e-44
Identities = 124/397 (31%), Positives = 204/397 (51%), Gaps = 10/397 (2%)
Frame = +1
Query: 157 KPTLNEVVIVSATRTPIG-SFLGSLSSLPATKLGSIAIQGAIEKAGIPKEEVKEVYMGNV 333
+ + +VV+V RT IG S G +L S + ++ + ++ ++ +GNV
Sbjct: 32 RASAEDVVVVHGRRTAIGRSGRGGFKDTTPDELLSAVMTAVLQDVKLSPAQLGDICVGNV 91
Query: 334 LQGGEGQAPTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQNLMCGHQDVMVAGGME 513
LQ G G R A + +P + P + +N+ C+SG++A+ + + G D+ +A G+E
Sbjct: 92 LQPGAGATMARIAQFLSDIPETVPLSAVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVE 151
Query: 514 SMSNVPYVMDRGTTPYGGVKLEDLIVKDGLTDVYNKIHMGNCAENTAKKLNIPRDEQDTY 693
SMS + DRG G L+ K+ D I MG +EN A++ I R++QDT+
Sbjct: 152 SMS----LADRGNP---GNITSRLVEKEKARDCL--IPMGITSENVAEQFGISREKQDTF 202
Query: 694 AINSYTRSKAAWEAGKFRSEVIPVTISVKGKPDT----VVKEDEEYK-RVDFNKVPKLKT 858
A+ S ++ A G F++E++PVT +V+ T V +DE + + KLK
Sbjct: 203 ALASQQKAARAQRQGCFQAEIVPVTTTVRDDKGTEQSITVAQDEGIRPNTTMEGLAKLKP 262
Query: 859 VFQKENGTVTAANASTLNDGXXXXXXXXXXXXKRLNVKPLXXXXXXXXXXXXXXXXXXXX 1038
F K+ G+ TA N+S ++DG + L + L
Sbjct: 263 AF-KDGGSTTAGNSSQVSDGAAAILLARRSKAEELGLPILGVLRSYAVVGVPPDIMGIGP 321
Query: 1039 XYAVPKVLKDAGLKKEDVTMWEVNEAFSVVVLANIKMLEIDPQKVNINGGAVSLGHPIGM 1218
YA+P L+ AGL +DV ++E+NEAF+ + ++ L++ +KVN GGAV+LGHP+G
Sbjct: 322 AYAIPVALQKAGLTVDDVDIFEINEAFASQAVYCVEKLKLPLEKVNPLGGAVALGHPLGC 381
Query: 1219 SGARIVVHLAHALK---QGEYGLASICNGGG-GASAM 1317
+GAR V+ L + LK + YG+ S+C G G GA+A+
Sbjct: 382 TGARQVITLLNELKRRGKRAYGVVSMCIGTGMGAAAV 418
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 54,264,062
Number of extensions: 1407970
Number of successful extensions: 4317
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4296
Number of HSP's successfully gapped: 6
Length of query: 515
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 408
Effective length of database: 14,140,958
Effective search space: 5769510864
Effective search space used: 5769510864
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
D+ +E +EAFS +LAN K ++ D
Sbjct: 310 FVYVSQDPKDQLLLGPTYATPKVLEKAGLTLNDIDAFEFHEAFSGQILANFKAMDSDWFA 369
Query: 1162 --------------PQKVNINGGAVSLGHPIGMSGARIVVHLAHALKQ--GEYGLASICN 1293
+K N GG++SLGHP G +G R+V+ A+ L++ G+YGL + C
Sbjct: 370 QNYMGRKTKVGSPPLEKFNNWGGSLSLGHPFGATGCRLVMAGANRLRKEGGQYGLVAACA 429
Query: 1294 GGGGASAMLIQ 1326
GG AM+++
Sbjct: 430 AGGQGHAMIVE 440
>ref|XP_538166.1| PREDICTED: similar to hydroxyacyl dehydrogenase, subunit B isoform 1
[Canis familiaris].
Length = 458
Score = 164 bits (416), Expect = 2e-40
Identities = 129/431 (29%), Positives = 196/431 (45%), Gaps = 39/431 (9%)
Frame = +1
Query: 151 VSKPTLNEVVIVSATRTPIGSFLGSLSSLPATKLGSIAIQGAIEKAGIPKEEVKEVYMGN 330
++KP + +V+V R P S L L A G + + + K+ V + G
Sbjct: 30 LAKPNIRNIVVVDGVRIPFLQSGTSYKDLMPHDLARAAFSGLLHRTNVSKDVVDYIIFGT 89
Query: 331 VLQGGEGQAPTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQNLMCGHQDVMVAGGM 510
V+Q + R+A LGAG TP T+ C S +A++ + G DV+VAGG+
Sbjct: 90 VIQEVKTSNVAREAALGAGFSDKTPAHTVTMACISANQAMITGVGLIASGQCDVVVAGGV 149
Query: 511 ESMSNVPY---------VMDRGTTPYGGVKLEDLIVKDGLTDVYNKIH----------MG 633
E MS+VP ++D G +L L+ K L + ++ MG
Sbjct: 150 ELMSDVPIRHSRKIRKMMLDLNKAKTLGQRLS-LLSKFRLNFLSPELPAVAEFSTSETMG 208
Query: 634 NCAENTAKKLNIPRDEQDTYAINSYTRSKAAWEAGKFRSEVIPVTISVKGKPDTVVKEDE 813
+ A+ A + R +QD YA+ S++ +K A + G S+++P V GK DTV K D
Sbjct: 209 HSADRLAAAFAVSRADQDEYALRSHSLAKKAQDEGLL-SDIVP--FKVPGK-DTVTK-DN 263
Query: 814 EYKRVDFNKVPKLKTVFQKENGTVTAANASTLNDGXXXXXXXXXXXXKRLNVK-PLXXXX 990
+ + ++ KLK F K GTVT AN+S L DG + K
Sbjct: 264 DIRPSSLEQMAKLKPAFIKPYGTVTTANSSFLTDGASAMLIMAEEKALAMGYKLKAYLRD 323
Query: 991 XXXXXXXXXXXXXXXXXYAVPKVLKDAGLKKEDVTMWEVNEAFSVVVLANIKMLEID--- 1161
YA PKVL+ AGL D+ +E +EAFS +LAN K ++ D
Sbjct: 324 FVYVSQDPKDQLLLGPTYATPKVLEKAGLTLNDIDAFEFHEAFSGQILANFKAMDSDWFA 383
Query: 1162 --------------PQKVNINGGAVSLGHPIGMSGARIVVHLAHALKQ--GEYGLASICN 1293
+K N GG++SLGHP G +G R+V+ A+ L++ G+YGL + C
Sbjct: 384 QNYMGRKTKVGSPPLEKFNNWGGSLSLGHPFGATGCRLVMAGANRLRKEGGQYGLVAACA 443
Query: 1294 GGGGASAMLIQ 1326
GG AM+++
Sbjct: 444 AGGQGHAMIVE 454
>ref|XP_547690.2| PREDICTED: similar to acetyl-coenzyme A acyltransferase 2 [Canis
familiaris].
Length = 382
Score = 154 bits (389), Expect = 2e-37
Identities = 111/388 (28%), Positives = 177/388 (45%), Gaps = 4/388 (1%)
Frame = +1
Query: 175 VVIVSATRTPIGSFLGSLSSLPATKLGSIAIQGAIEKAGIPKEEVKEVYMGNVLQGGEGQ 354
V IV+A RTP G++ G L AT L +A + A+ G+ E + + +GNV+Q
Sbjct: 3 VFIVAAKRTPFGAYGGLLKDFTATDLTELAARAALSAGGVSPEAIDSIIVGNVMQSSS-D 61
Query: 355 AP--TRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQNLMCGHQDVMVAGGMESMSNV 528
AP R L G+P P +N++C SG ++I+ Q + + GG +
Sbjct: 62 APYLARHVGLRVGVPKEVPAFVVNRLCGSGFQSIVSGCQRITGKDAEKKGCGGTGCLGLS 121
Query: 529 PYVMDRGTTPYGGVKLEDLIVKDGLTDVYNKIHMGNCAENTAKKLNIPRDEQDTYAINSY 708
P+ +L++L + +++ + + K + RD +
Sbjct: 122 PHGQKNQKQSLSPTELQNLDY-NSMSESQFRSTIIQLLVALEKSIKDSRDFMTAEFRANQ 180
Query: 709 TRSKAAWEAGKFRSEVIPVTISVKGKPDTVVKEDEEYKRVDFNKVPKLKTVFQKENGTVT 888
K + + EV+ + ++ E+ R ++ KL +F+KE GTVT
Sbjct: 181 AEIKNQLNEMQSKLEVLTMRVN--------EVEERVKPRTTLEQLNKLPPLFKKE-GTVT 231
Query: 889 AANASTLNDGXXXXXXXXXXXXKRLNVKPLXXXXXXXXXXXXXXXXXXXXXYAVPKVLKD 1068
A NAS ++DG K+ N PL A+ LK
Sbjct: 232 AGNASGVSDGAGAVIIASEDAVKKHNFTPLARIVGYFVSGCDPSIMGIGPVPAINGALKK 291
Query: 1069 AGLKKEDVTMWEVNEAFSVVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSGARIVVHLA 1248
G +D+ + EVNEAF+ LA K L++DP K N+NGGA++LGHP+G SG RI+ HL
Sbjct: 292 IGRSLKDMDLVEVNEAFAPQYLAVEKSLDLDPSKTNVNGGAIALGHPLGGSGTRIMAHLV 351
Query: 1249 HALKQ--GEYGLASICNGGGGASAMLIQ 1326
H L++ G+Y + S C GGG A++I+
Sbjct: 352 HELRRRGGKYAMGSACIGGGQGIAVVIE 379
>ref|XP_859591.1| PREDICTED: similar to Trifunctional enzyme beta subunit,
mitochondrial precursor (TP-beta) isoform 3 [Canis
familiaris].
Length = 440
Score = 149 bits (377), Expect = 5e-36
Identities = 120/400 (30%), Positives = 178/400 (44%), Gaps = 37/400 (9%)
Frame = +1
Query: 151 VSKPTLNEVVIVSATRTPIGSFLGSLSSLPATKLGSIAIQGAIEKAGIPKEEVKEVYMGN 330
++KP + +V+V R P S L L A+ G + + +PK+ V + G
Sbjct: 47 LAKPNIRNIVVVDGVRIPFLQSGTSYKDLMPHDLARAALSGLLHRTNVPKDVVDYIIFGT 106
Query: 331 VLQGGEGQAPTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQNLMCGHQDVMVAGGM 510
V+Q + R+A LGAG TP T+ C S +A+ + G DV+VAGG+
Sbjct: 107 VIQEVKTSNVAREAALGAGFSDKTPAHTVTMACISANQAMTTGVGLIASGQCDVVVAGGV 166
Query: 511 ESMSNVPY---------VMDRGTTPYGGVKLEDLIVKDGLTDVYNKIH----------MG 633
E MS+VP ++D G +L L+ K L + ++ MG
Sbjct: 167 ELMSDVPIRHSRKMRKMMLDLNKAKTLGQRLS-LLSKFRLNFLSPELPAVAEFSTSETMG 225
Query: 634 NCAENTAKKLNIPRDEQDTYAINSYTRSKAAWEAGKFRSEVIPVTISVKGKPDTVVKEDE 813
+ A+ A + R +QD YA+ S++ +K A + G S+++P V GK DTV K D
Sbjct: 226 HSADRLAAAFAVSRADQDEYALRSHSLAKKAQDEGLL-SDIVP--FKVPGK-DTVTK-DN 280
Query: 814 EYKRVDFNKVPKLKTVFQKENGTVTAANASTLNDGXXXXXXXXXXXXKRLNVKP-LXXXX 990
+ ++ KLK F K GTVTAAN+S L DG + KP
Sbjct: 281 GIRPSSLEQMAKLKPAFIKPYGTVTAANSSFLTDGASAMLIMAEEKALAMGYKPKAYLRD 340
Query: 991 XXXXXXXXXXXXXXXXXYAVPKVLKDAGLKKEDVTMWEVNEAFSVVVLANIKMLEID--- 1161
YA PKVL+ AGL D+ +E +EAFS +LAN K ++ D
Sbjct: 341 FVYVSQDPKDQLLLGPTYATPKVLEKAGLTLNDIDAFEFHEAFSGQILANFKAMDSDWFA 400
Query: 1162 --------------PQKVNINGGAVSLGHPIGMSGARIVV 1239
+K N GG++SLGHP G +G R ++
Sbjct: 401 QNYMGRKTKVGSPPLEKFNNWGGSLSLGHPFGATGCRAML 440
>ref|XP_865177.1| PREDICTED: similar to hydroxyacyl-Coenzyme A
dehydrogenase/3-ketoacyl-Coenzyme A
thiolase/enoyl-Coenzyme A hydratase (trifunctional
protein), beta subunit isoform 2 [Canis familiaris].
Length = 423
Score = 143 bits (361), Expect = 4e-34
Identities = 116/400 (29%), Positives = 174/400 (43%), Gaps = 37/400 (9%)
Frame = +1
Query: 151 VSKPTLNEVVIVSATRTPIGSFLGSLSSLPATKLGSIAIQGAIEKAGIPKEEVKEVYMGN 330
++KP + +V+V R P S L L A G + + + K+ V + G
Sbjct: 30 LAKPNIRNIVVVDGVRIPFLQSGTSYKDLMPHDLARAAFSGLLHRTNVSKDVVDYIIFGT 89
Query: 331 VLQGGEGQAPTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQNLMCGHQDVMVAGGM 510
V+Q + R+A LGAG TP T+ C S +A++ + G DV+VAGG+
Sbjct: 90 VIQEVKTSNVAREAALGAGFSDKTPAHTVTMACISANQAMITGVGLIASGQCDVVVAGGV 149
Query: 511 ESMSNVP---------YVMDRGTTPYGGVKLEDLIVK----------DGLTDVYNKIHMG 633
E MS+VP ++D G +L L+ K + + MG
Sbjct: 150 ELMSDVPIRHSRKIRKMMLDLNKAKTLGQRL-SLLSKFRLNFLSPELPAVAEFSTSETMG 208
Query: 634 NCAENTAKKLNIPRDEQDTYAINSYTRSKAAWEAGKFRSEVIPVTISVKGKPDTVVKEDE 813
+ A+ A + R +QD YA+ S++ +K A + G S+++P V GK DTV K D
Sbjct: 209 HSADRLAAAFAVSRADQDEYALRSHSLAKKAQDEG-LLSDIVP--FKVPGK-DTVTK-DN 263
Query: 814 EYKRVDFNKVPKLKTVFQKENGTVTAANASTLNDGXXXXXXXXXXXXKRLNVK-PLXXXX 990
+ + ++ KLK F K GTVT AN+S L DG + K
Sbjct: 264 DIRPSSLEQMAKLKPAFIKPYGTVTTANSSFLTDGASAMLIMAEEKALAMGYKLKAYLRD 323
Query: 991 XXXXXXXXXXXXXXXXXYAVPKVLKDAGLKKEDVTMWEVNEAFSVVVLANIKMLEID--- 1161
YA PKVL+ AGL D+ +E +EAFS +LAN K ++ D
Sbjct: 324 FVYVSQDPKDQLLLGPTYATPKVLEKAGLTLNDIDAFEFHEAFSGQILANFKAMDSDWFA 383
Query: 1162 --------------PQKVNINGGAVSLGHPIGMSGARIVV 1239
+K N GG++SLGHP G +G R ++
Sbjct: 384 QNYMGRKTKVGSPPLEKFNNWGGSLSLGHPFGATGCRAML 423
>ref|XP_859620.1| PREDICTED: similar to hydroxyacyl dehydrogenase, subunit B isoform 4
[Canis familiaris].
Length = 410
Score = 142 bits (358), Expect = 9e-34
Identities = 126/403 (31%), Positives = 182/403 (45%), Gaps = 39/403 (9%)
Frame = +1
Query: 235 LPATKLGSIAIQGAIEKAGIPKEEVKEVYMGNVLQGGEGQAPTRQAVLGAGLPISTPCTT 414
LPAT S Q K + + + KE Y G+ A A LGAG TP T
Sbjct: 14 LPATSCPSCTDQ---IKENLSQTQHKE-YCGSGWCSHSVFAVRHFAALGAGFSDKTPAHT 69
Query: 415 INKVCASGMKAIMMASQNLMCGHQDVMVAGGMESMSNVPY---------VMDRGTTPYGG 567
+ C S +A+ + G DV+VAGG+E MS+VP ++D G
Sbjct: 70 VTMACISANQAMTTGVGLIASGQCDVVVAGGVELMSDVPIRHSRKMRKMMLDLNKAKTLG 129
Query: 568 VKLEDLIVKDGLTDVYNKIH----------MGNCAENTAKKLNIPRDEQDTYAINSYTRS 717
+L L+ K L + ++ MG+ A+ A + R +QD YA+ S++ +
Sbjct: 130 QRLS-LLSKFRLNFLSPELPAVAEFSTSETMGHSADRLAAAFAVSRADQDEYALRSHSLA 188
Query: 718 KAAWEAGKFRSEVIPVTISVKGKPDTVVKEDEEYKRVDFNKVPKLKTVFQKENGTVTAAN 897
K A + G S+++P V GK DTV K D + ++ KLK F K GTVTAAN
Sbjct: 189 KKAQDEGLL-SDIVP--FKVPGK-DTVTK-DNGIRPSSLEQMAKLKPAFIKPYGTVTAAN 243
Query: 898 ASTLNDGXXXXXXXXXXXXKRLNVKP-LXXXXXXXXXXXXXXXXXXXXXYAVPKVLKDAG 1074
+S L DG + KP YA PKVL+ AG
Sbjct: 244 SSFLTDGASAMLIMAEEKALAMGYKPKAYLRDFVYVSQDPKDQLLLGPTYATPKVLEKAG 303
Query: 1075 LKKEDVTMWEVNEAFSVVVLANIKMLEID-----------------PQKVNINGGAVSLG 1203
L D+ +E +EAFS +LAN K ++ D +K N GG++SLG
Sbjct: 304 LTLNDIDAFEFHEAFSGQILANFKAMDSDWFAQNYMGRKTKVGSPPLEKFNNWGGSLSLG 363
Query: 1204 HPIGMSGARIVVHLAHALKQ--GEYGLASICNGGGGASAMLIQ 1326
HP G +G R+V+ A+ L++ G+YGL + C GG AM+++
Sbjct: 364 HPFGATGCRLVMAAANRLRKEGGQYGLVAACAAGGQGHAMIVE 406
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 56,289,673
Number of extensions: 1416010
Number of successful extensions: 4229
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 4193
Number of HSP's successfully gapped: 24
Length of query: 515
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 408
Effective length of database: 15,307,552
Effective search space: 6245481216
Effective search space used: 6245481216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012602
(1546 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003357324.1| PREDICTED: acetyl-CoA acetyltransferase, mit... 759 0.0
Alignment gi|XP_001928380.1| PREDICTED: acetyl-CoA acetyltransferase, cyt... 264 1e-70
Alignment gi|NP_001161110.1| 3-ketoacyl-CoA thiolase, mitochondrial [Sus ... 232 5e-61
Alignment gi|XP_003132151.1| PREDICTED: 3-ketoacyl-CoA thiolase A, peroxi... 182 4e-46
Alignment gi|NP_999131.1| long-chain 3-ketoacyl-CoA thiolase [Sus scrofa]. 175 5e-44
Alignment gi|XP_003132161.2| PREDICTED: 3-ketoacyl-CoA thiolase, peroxiso... 128 8e-30
Alignment gi|XP_003132152.1| PREDICTED: 3-ketoacyl-CoA thiolase A, peroxi... 82 6e-16
>ref|XP_003357324.1| PREDICTED: acetyl-CoA acetyltransferase, mitochondrial [Sus scrofa].
Length = 426
Score = 759 bits (1961), Expect = 0.0
Identities = 393/426 (92%), Positives = 393/426 (92%)
Frame = +1
Query: 55 MAVLSVLVRGACGRSLLLRRRMQEIRYVERSYVSKPTLNEVVIVSATRTPIGSFLGSLSS 234
MAVLSVLVRGACGRSLLLRRRMQEIRYVERSYVSKPTLNEVVIVSATRTPIGSFLGSLSS
Sbjct: 1 MAVLSVLVRGACGRSLLLRRRMQEIRYVERSYVSKPTLNEVVIVSATRTPIGSFLGSLSS 60
Query: 235 LPATKLGSIAIQGAIEKAGIPKEEVKEVYMGNVLQGGEGQAPTRQAVLGAGLPISTPCTT 414
LPATKLGSIAIQGAIEKAGIPKEEVKEVYMGNVLQGGEGQAPTRQAVLGAGLPISTPCTT
Sbjct: 61 LPATKLGSIAIQGAIEKAGIPKEEVKEVYMGNVLQGGEGQAPTRQAVLGAGLPISTPCTT 120
Query: 415 INKVCASGMKAIMMASQNLMCGHQDVMVAGGMESMSNVPYVMDRGTTPYGGVKLEDLIVK 594
INKVCASGMKAIMMASQNLMCGHQDVMVAGGMESMSNVPYVMDRGTTPYGGVKLEDLIVK
Sbjct: 121 INKVCASGMKAIMMASQNLMCGHQDVMVAGGMESMSNVPYVMDRGTTPYGGVKLEDLIVK 180
Query: 595 DGLTDVYNKIHMGNCAENTAKKLNIPRDEQDTYAINSYTRSKAAWEAGKFRSEVIPVTIS 774
DGLTDVYNKIHMGNCAENTAKKLNIPRDEQDTYAINSYTRSKAAWEAGKFRSEVIPVTIS
Sbjct: 181 DGLTDVYNKIHMGNCAENTAKKLNIPRDEQDTYAINSYTRSKAAWEAGKFRSEVIPVTIS 240
Query: 775 VKGKPDTVVKEDEEYKRVDFNKVPKLKTVFQKENGTVTAANASTLNDGXXXXXXXXXXXX 954
VKGKPDTVVKEDEEYKRVDFNKVPKLKTVFQKENGTVTAANASTLNDG
Sbjct: 241 VKGKPDTVVKEDEEYKRVDFNKVPKLKTVFQKENGTVTAANASTLNDGAAAVVLMTADAA 300
Query: 955 KRLNVKPLXXXXXXXXXXXXXXXXXXXXXYAVPKVLKDAGLKKEDVTMWEVNEAFSVVVL 1134
KRLNVKPL YAVPKVLKDAGLKKEDVTMWEVNEAFSVVVL
Sbjct: 301 KRLNVKPLARIAAFADAAVDPIDFPIAPAYAVPKVLKDAGLKKEDVTMWEVNEAFSVVVL 360
Query: 1135 ANIKMLEIDPQKVNINGGAVSLGHPIGMSGARIVVHLAHALKQGEYGLASICNGGGGASA 1314
ANIKMLEIDPQKVNINGGAVSLGHPIGMSGARIVVHLAHALKQGEYGLASICNGGGGASA
Sbjct: 361 ANIKMLEIDPQKVNINGGAVSLGHPIGMSGARIVVHLAHALKQGEYGLASICNGGGGASA 420
Query: 1315 MLIQKL 1332
MLIQKL
Sbjct: 421 MLIQKL 426
>ref|XP_001928380.1| PREDICTED: acetyl-CoA acetyltransferase, cytosolic [Sus scrofa].
Length = 397
Score = 264 bits (674), Expect = 1e-70
Identities = 158/390 (40%), Positives = 224/390 (57%), Gaps = 5/390 (1%)
Frame = +1
Query: 175 VVIVSATRTPIGSFLGSLSSLPATKLGSIAIQGAIEKAGIPKEEVKEVYMGNVLQGGEGQ 354
VVIVSA RT IGSF G+LS++P LGS I+ +++A + +EV EV G+VL G GQ
Sbjct: 8 VVIVSAARTVIGSFNGALSTVPVHDLGSTVIREVLKRANVDPKEVSEVIFGHVLTAGCGQ 67
Query: 355 APTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQNLMCGHQDVMVAGGMESMSNVPY 534
P RQA +GAG+P S P + +C SG+KA+ +A+Q + G ++VAGGME+MS P+
Sbjct: 68 NPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQAIGVGDSRIVVAGGMENMSKAPH 127
Query: 535 VMD-RGTTPYGGVKLEDLIVKDGLTDVYNKIHMGNCAENTAKKLNIPRDEQDTYAINSYT 711
++ R G L D I+ DGLTD ++ HMG AEN AKK + R++QD A S
Sbjct: 128 LVRLRTGVRLGEAALTDSILCDGLTDAFHNYHMGITAENVAKKWQVSREDQDRLAALSQD 187
Query: 712 RSKAAWEAGKFRSEVIPVTISVKGKPDTVVKEDE-EYKRVDFNKVPKLKTVFQKE-NGTV 885
R++ A +AG F E++PV +S + K T VK DE + KLK F + GTV
Sbjct: 188 RTEKAQKAGHFDKEIVPVFVSSR-KGVTEVKTDEFPRPGSTLEAMSKLKPYFLTDGTGTV 246
Query: 886 TAANASTLNDGXXXXXXXXXXXXKRLNVKPLXXXXXXXXXXXXXXXXXXXXXYAVPKVLK 1065
T ANAS +NDG + + PL A+ + +
Sbjct: 247 TPANASGINDGAAAVVLMKKSEAENRGLTPLAHIVSWSQAGVEPSIMGTGPIPAIKQAVA 306
Query: 1066 DAGLKKEDVTMWEVNEAFSVVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSGARIVVHL 1245
AG EDV ++E+NEAF+ V +A +K L ++P+KVN GGA++LGHP+G SG RI+V L
Sbjct: 307 KAGWSLEDVDIFEINEAFAAVSVAIVKELGLNPEKVNTEGGAIALGHPLGASGCRILVTL 366
Query: 1246 AHAL--KQGEYGLASICNGGGGASAMLIQK 1329
H + K + G+A++C GGG AM +Q+
Sbjct: 367 LHTMERKGCQRGVAALCIGGGMGIAMCVQR 396
>ref|NP_001161110.1| 3-ketoacyl-CoA thiolase, mitochondrial [Sus scrofa].
Length = 397
Score = 232 bits (591), Expect = 5e-61
Identities = 147/393 (37%), Positives = 205/393 (52%), Gaps = 6/393 (1%)
Frame = +1
Query: 166 LNEVVIVSATRTPIGSFLGSLSSLPATKLGSIAIQGAIEKAGIPKEEVKEVYMGNVLQGG 345
L V IV+A RTP G+F G L AT L A + A+ + E + V +GNV+Q
Sbjct: 4 LRGVFIVAAKRTPFGAFGGLLKDFTATDLTEFAARAALSAGNVSPETIDSVIVGNVMQSS 63
Query: 346 EGQAP-TRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQNLMCGHQDVMVAGGMESMS 522
R L G+P TP T+N++C SG ++I+ Q + V++ GG ESMS
Sbjct: 64 SDAIYLARHVGLRVGIPKETPALTVNRLCGSGFQSIVNGCQEICAKDAKVVLCGGTESMS 123
Query: 523 NVPYVMDR---GTTPYGGVKLEDLIVKDGLTDVYNKIHMGNCAENTAKKLNIPRDEQDTY 693
PY + GT +KLED + GLTD + +I M AEN A K I R+E D Y
Sbjct: 124 QAPYCVRNIRFGTKLGLDLKLEDSLWT-GLTDQHIQIPMAITAENLAAKHKISREECDKY 182
Query: 694 AINSYTRSKAAWEAGKFRSEVIPVTISVKGKPDTVVKEDEEYKRVDFNKVPKLKTVFQKE 873
A+ S R KAA +AG F +E+ P+ + K T+ ++ + ++ KL VF+KE
Sbjct: 183 ALQSQQRWKAANDAGYFNNEMAPIEVKTKKGKQTMQVDEHARPQTTLEQLSKLPPVFKKE 242
Query: 874 NGTVTAANASTLNDGXXXXXXXXXXXXKRLNVKPLXXXXXXXXXXXXXXXXXXXXXYAVP 1053
GTVTA NAS ++DG K+ N PL A+
Sbjct: 243 -GTVTAGNASGISDGAGAVIIASEDAVKKHNFTPLARIVGYFASGCDPSIMGIGPVPAIT 301
Query: 1054 KVLKDAGLKKEDVTMWEVNEAFSVVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSGARI 1233
LK AGL +D+ + EVNEAF+ LA K L++DP K N+NGGA++LGHP+G SGARI
Sbjct: 302 GALKKAGLSLKDMDLVEVNEAFAPQYLAVEKSLDLDPSKTNVNGGAIALGHPLGGSGARI 361
Query: 1234 VVHLAHALKQ--GEYGLASICNGGGGASAMLIQ 1326
HL H L++ +Y + S C GGG A++I+
Sbjct: 362 TSHLVHELRRRGKKYAVGSACIGGGQGIAIIIE 394
>ref|XP_003132151.1| PREDICTED: 3-ketoacyl-CoA thiolase A, peroxisomal isoform 1 [Sus
scrofa].
Length = 426
Score = 182 bits (462), Expect = 4e-46
Identities = 127/392 (32%), Positives = 205/392 (52%), Gaps = 10/392 (2%)
Frame = +1
Query: 172 EVVIVSATRTPIG-SFLGSLSSLPATKLGSIAIQGAIEKAGIPKEEVKEVYMGNVLQGGE 348
++V+V RT IG S G +L S + ++ + ++ ++ +GNVLQ G
Sbjct: 39 DIVVVHGRRTAIGRSGRGGFKDTTPDELLSAVMTAVLQDVKLSPAQLGDICVGNVLQPGA 98
Query: 349 GQAPTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQNLMCGHQDVMVAGGMESMSNV 528
G R A + +P + P +T+N+ C+SG++A+ + + G D+ +A G+ESM+
Sbjct: 99 GAVMARIAQFLSDIPETVPLSTVNRQCSSGLQAVANIAGGIRNGSYDIGMACGVESMT-- 156
Query: 529 PYVMDRGTTPYGGVKLEDLIVKDGLTDVYNKIHMGNCAENTAKKLNIPRDEQDTYAINSY 708
+ DRG G L+ K+ D I MG +EN AK+ I R++QDT+A+ S
Sbjct: 157 --LGDRGNP---GNISSRLVEKEKARDCL--IPMGITSENVAKRFGISREKQDTFALASQ 209
Query: 709 TRSKAAWEAGKFRSEVIPVTISV---KG--KPDTVVKEDEEYKRVDFNKVPKLKTVFQKE 873
++ A G F++E++PVT +V KG K TV +++ + KLK F K+
Sbjct: 210 QKAARAQSKGCFQAEIVPVTTTVYDDKGNEKSITVAQDEGIRPNTTMEGLAKLKPAF-KQ 268
Query: 874 NGTVTAANASTLNDGXXXXXXXXXXXXKRLNVKPLXXXXXXXXXXXXXXXXXXXXXYAVP 1053
G+ TA N+S ++DG K L + L YA+P
Sbjct: 269 GGSTTAGNSSQVSDGAAALLLARRSKAKELGLPILGILRSYAVVGVPPDIMGIGPAYAIP 328
Query: 1054 KVLKDAGLKKEDVTMWEVNEAFSVVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSGARI 1233
L+ AGL +D+ ++E+NEAF+ L ++ L++ P+KVN GGAV+LGHP+G +GAR
Sbjct: 329 VALEKAGLTVDDIDIFEINEAFASQALYCVEKLKLPPEKVNPLGGAVALGHPLGCTGARQ 388
Query: 1234 VVHLAHALK---QGEYGLASICNGGG-GASAM 1317
V+ L + LK + YG+ S+C G G GA+A+
Sbjct: 389 VITLLNELKRRGKRAYGVVSMCIGTGMGAAAV 420
>ref|NP_999131.1| long-chain 3-ketoacyl-CoA thiolase [Sus scrofa].
Length = 442
Score = 175 bits (444), Expect = 5e-44
Identities = 134/431 (31%), Positives = 200/431 (46%), Gaps = 39/431 (9%)
Frame = +1
Query: 151 VSKPTLNEVVIVSATRTPIGSFLGSLSSLPATKLGSIAIQGAIEKAGIPKEEVKEVYMGN 330
++KP + +V+V R P S L L A+ G + + +PK+ V + G
Sbjct: 14 LAKPNIRNIVVVDGVRIPFLQSGTSYKELMPHDLARAALLGLLHRTSVPKDVVDYLVFGT 73
Query: 331 VLQGGEGQAPTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQNLMCGHQDVMVAGGM 510
V+Q + R+A LGAG TP T+ C S +A+ + G DV+VAGG+
Sbjct: 74 VIQEVKTSNVAREAALGAGFSDKTPAHTVTMACISSNQAMTTGVSLIASGQFDVVVAGGV 133
Query: 511 ESMSNVPY---------VMDRGTTPYGGVKLEDLIVKDGLTDVYNKIH----------MG 633
E MS++P ++D G +L LI K L + ++ MG
Sbjct: 134 ELMSDIPIRHSRKMRKMMLDLNKAKTLGQRLS-LISKFRLNFLSPELPAVAEFSTSETMG 192
Query: 634 NCAENTAKKLNIPRDEQDTYAINSYTRSKAAWEAGKFRSEVIPVTISVKGKPDTVVKEDE 813
+ A+ A + R EQD YA+ S++ +K A + G S+V+P V GK DTV+K D
Sbjct: 193 HSADRLAAAFAVSRSEQDEYALRSHSLAKKAQDEGLL-SDVVP--FKVPGK-DTVLK-DN 247
Query: 814 EYKRVDFNKVPKLKTVFQKENGTVTAANASTLNDGXXXXXXXXXXXXKRLNVKP-LXXXX 990
+ ++ KLK F K GTVTAAN+S L DG + KP
Sbjct: 248 GIRPSSLEQMAKLKPAFIKPYGTVTAANSSFLTDGASAVLIMAEEKALAMGYKPKAYLRD 307
Query: 991 XXXXXXXXXXXXXXXXXYAVPKVLKDAGLKKEDVTMWEVNEAFSVVVLANIKMLEID--- 1161
YA PKVL+ AGL D+ +E +EAFS +LAN+K ++ D
Sbjct: 308 FIYVSQDPKDQLLLGPTYATPKVLEKAGLTMNDIDAFEFHEAFSGQILANLKAMDSDWFA 367
Query: 1162 --------------PQKVNINGGAVSLGHPIGMSGARIVVHLAHALKQ--GEYGLASICN 1293
+K N GG++SLGHP G +G R+V+ A+ L++ G+YGL + C
Sbjct: 368 QNYMGRKAKVGSPPLEKFNNWGGSLSLGHPFGATGCRLVMTAANRLRKEGGQYGLVAACA 427
Query: 1294 GGGGASAMLIQ 1326
GG AM+++
Sbjct: 428 AGGQGHAMIVE 438
>ref|XP_003132161.2| PREDICTED: 3-ketoacyl-CoA thiolase, peroxisomal-like [Sus scrofa].
Length = 390
Score = 128 bits (322), Expect = 8e-30
Identities = 106/371 (28%), Positives = 171/371 (46%), Gaps = 6/371 (1%)
Frame = +1
Query: 223 SLSSLPATKLGSIAIQGAIEKAGIPKEEVKEVYMGNVLQGGEGQAPTRQAVLGAGLPIST 402
SL +L S + ++ + ++ ++ +GNVLQ G G R A + +P +
Sbjct: 43 SLQDTTPDELLSAVMTAVLQDVKLSPAQLGDICVGNVLQPGAGAVMARIAQFLSDIPETV 102
Query: 403 PCTTINKVCASGMKAIMMASQNLMCGHQDVMVAGGMESMSNVPYVMDRGTTPYGGVKLED 582
P +T+N+ C+SG++A+ + + G D+ +A G+ESM+ + DRG G
Sbjct: 103 PLSTVNRQCSSGLQAVANIAGGIRNGSYDIGMACGVESMT----LGDRGNP---GNISSR 155
Query: 583 LIVKDGLTDVYNKIHMGNCAENTAKKLNIPRDEQDTYAINSYTRSKAAWEAGKFRSEVIP 762
L+ K+ D I MG +EN AK+ I R++QDT+A+ S ++ A G F++E++P
Sbjct: 156 LVEKEKARDCL--IPMGITSENVAKRFGISREKQDTFALASQQKAARAQSKGCFQAEIVP 213
Query: 763 VTISV---KG--KPDTVVKEDEEYKRVDFNKVPKLKTVFQKENGTVTAANASTLNDGXXX 927
VT +V KG K TV +++ + KLK F K+ G+ TA N+S ++DG
Sbjct: 214 VTTTVYDDKGNEKSITVAQDEGIRPNTTMEGLAKLKPAF-KQGGSTTAGNSSQVSDGAAA 272
Query: 928 XXXXXXXXXKRLNVKPLXXXXXXXXXXXXXXXXXXXXXYAVPKVLKDAGLKKEDVTMWEV 1107
K L + L YA+P L+ AGL +D+ ++E+
Sbjct: 273 LLLARRSKAKELGLPILGILRSYAVVGVPPDIMGIGPAYAIPVALEKAGLTVDDIDIFEI 332
Query: 1108 NEAFSVVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSGARIVVHLAHALKQGEYGLASI 1287
NEAF+ Q G L P +S H H YG+ S+
Sbjct: 333 NEAFA-------------SQLSWARGELGDLILPFRLS------HNQHIFFHRAYGVVSM 373
Query: 1288 CNGGG-GASAM 1317
C G G GA+A+
Sbjct: 374 CIGTGMGAAAV 384
>ref|XP_003132152.1| PREDICTED: 3-ketoacyl-CoA thiolase A, peroxisomal isoform 2 [Sus
scrofa].
Length = 333
Score = 82.4 bits (202), Expect = 6e-16
Identities = 64/246 (26%), Positives = 110/246 (44%), Gaps = 6/246 (2%)
Frame = +1
Query: 172 EVVIVSATRTPIG-SFLGSLSSLPATKLGSIAIQGAIEKAGIPKEEVKEVYMGNVLQGGE 348
++V+V RT IG S G +L S + ++ + ++ ++ +GNVLQ G
Sbjct: 39 DIVVVHGRRTAIGRSGRGGFKDTTPDELLSAVMTAVLQDVKLSPAQLGDICVGNVLQPGA 98
Query: 349 GQAPTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQNLMCGHQDVMVAGGMESMSNV 528
G R A + +P + P +T+N+ C+SG++A+ + + G D+ +A G+ S
Sbjct: 99 GAVMARIAQFLSDIPETVPLSTVNRQCSSGLQAVANIAGGIRNGSYDIGMACGITS---- 154
Query: 529 PYVMDRGTTPYGGVKLEDLIVKDGLTDVYNKIHMGNCAENTAKKLNIPRDEQDTYAINSY 708
EN AK+ I R++QDT+A+ S
Sbjct: 155 --------------------------------------ENVAKRFGISREKQDTFALASQ 176
Query: 709 TRSKAAWEAGKFRSEVIPVTISV---KG--KPDTVVKEDEEYKRVDFNKVPKLKTVFQKE 873
++ A G F++E++PVT +V KG K TV +++ + KLK F K+
Sbjct: 177 QKAARAQSKGCFQAEIVPVTTTVYDDKGNEKSITVAQDEGIRPNTTMEGLAKLKPAF-KQ 235
Query: 874 NGTVTA 891
G+ TA
Sbjct: 236 GGSTTA 241
Score = 74.3 bits (181), Expect = 2e-13
Identities = 40/87 (45%), Positives = 61/87 (70%), Gaps = 4/87 (4%)
Frame = +1
Query: 1069 AGLKKEDVTMWEVNEAFSVVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSGARIVVHLA 1248
AGL +D+ ++E+NEAF+ L ++ L++ P+KVN GGAV+LGHP+G +GAR V+ L
Sbjct: 241 AGLTVDDIDIFEINEAFASQALYCVEKLKLPPEKVNPLGGAVALGHPLGCTGARQVITLL 300
Query: 1249 HALK---QGEYGLASICNGGG-GASAM 1317
+ LK + YG+ S+C G G GA+A+
Sbjct: 301 NELKRRGKRAYGVVSMCIGTGMGAAAV 327
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,129,926
Number of extensions: 937436
Number of successful extensions: 2617
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2595
Number of HSP's successfully gapped: 9
Length of query: 515
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 412
Effective length of database: 8,779,541
Effective search space: 3617170892
Effective search space used: 3617170892
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012602
(1546 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_659033.1| acetyl-CoA acetyltransferase, mitochondrial pre... 662 0.0
Alignment gi|NP_033364.2| acetyl-CoA acetyltransferase, cytosolic [Mus mu... 277 2e-74
Alignment gi|NP_694791.2| acetyl-Coenzyme A acetyltransferase 3 [Mus musc... 276 2e-74
Alignment gi|NP_803421.1| 3-ketoacyl-CoA thiolase, mitochondrial [Mus mus... 238 1e-62
Alignment gi|NP_570934.1| 3-ketoacyl-CoA thiolase A, peroxisomal precurso... 179 4e-45
Alignment gi|NP_666342.1| 3-ketoacyl-CoA thiolase B, peroxisomal precurso... 179 7e-45
Alignment gi|NP_663533.1| trifunctional enzyme subunit beta, mitochondria... 175 1e-43
Alignment gi|XP_003086283.1| PREDICTED: trifunctional enzyme subunit beta... 127 3e-29
>ref|NP_659033.1| acetyl-CoA acetyltransferase, mitochondrial precursor [Mus musculus].
Length = 424
Score = 662 bits (1709), Expect = 0.0
Identities = 336/413 (81%), Positives = 359/413 (86%)
Frame = +1
Query: 94 RSLLLRRRMQEIRYVERSYVSKPTLNEVVIVSATRTPIGSFLGSLSSLPATKLGSIAIQG 273
R LLR +QE+R +ERSY SKPTLNEVVIVSA RTPIGSFLGSL+S PATKLG+ AIQG
Sbjct: 12 RRPLLRGLLQEVRCLERSYASKPTLNEVVIVSAIRTPIGSFLGSLASQPATKLGTAAIQG 71
Query: 274 AIEKAGIPKEEVKEVYMGNVLQGGEGQAPTRQAVLGAGLPISTPCTTINKVCASGMKAIM 453
AIEKAGIPKEEVKEVYMGNV+QGGEGQAPTRQA LGAGLPISTPCTT+NKVCASGMKAIM
Sbjct: 72 AIEKAGIPKEEVKEVYMGNVIQGGEGQAPTRQATLGAGLPISTPCTTVNKVCASGMKAIM 131
Query: 454 MASQNLMCGHQDVMVAGGMESMSNVPYVMDRGTTPYGGVKLEDLIVKDGLTDVYNKIHMG 633
MASQ+LMCGHQDVMVAGGMESMSNVPYVM RG TPYGGVKLEDLIVKDGLTDVYNKIHMG
Sbjct: 132 MASQSLMCGHQDVMVAGGMESMSNVPYVMSRGATPYGGVKLEDLIVKDGLTDVYNKIHMG 191
Query: 634 NCAENTAKKLNIPRDEQDTYAINSYTRSKAAWEAGKFRSEVIPVTISVKGKPDTVVKEDE 813
NCAENTAKK+NI R EQDTYA++SYTRSK AW+AGKF SE+ P+TISVKGKPD VVKEDE
Sbjct: 192 NCAENTAKKMNISRQEQDTYALSSYTRSKEAWDAGKFASEITPITISVKGKPDVVVKEDE 251
Query: 814 EYKRVDFNKVPKLKTVFQKENGTVTAANASTLNDGXXXXXXXXXXXXKRLNVKPLXXXXX 993
EYKRVDF+KVPKLKTVFQKENGT+TAANASTLNDG +RLNVKPL
Sbjct: 252 EYKRVDFSKVPKLKTVFQKENGTITAANASTLNDGAAALVLMTAEAAQRLNVKPLARIAA 311
Query: 994 XXXXXXXXXXXXXXXXYAVPKVLKDAGLKKEDVTMWEVNEAFSVVVLANIKMLEIDPQKV 1173
YAVPKVLK AGLKKED+ MWEVNEAFSVVVLANIKMLEIDPQKV
Sbjct: 312 FADAAVDPIDFPLAPAYAVPKVLKYAGLKKEDIAMWEVNEAFSVVVLANIKMLEIDPQKV 371
Query: 1174 NINGGAVSLGHPIGMSGARIVVHLAHALKQGEYGLASICNGGGGASAMLIQKL 1332
NI+GGAVSLGHPIGMSGARIVVH+AHALK GE+GLASICNGGGGASA+LI+KL
Sbjct: 372 NIHGGAVSLGHPIGMSGARIVVHMAHALKPGEFGLASICNGGGGASALLIEKL 424
>ref|NP_033364.2| acetyl-CoA acetyltransferase, cytosolic [Mus musculus].
Length = 397
Score = 277 bits (708), Expect = 2e-74
Identities = 163/390 (41%), Positives = 232/390 (59%), Gaps = 5/390 (1%)
Frame = +1
Query: 175 VVIVSATRTPIGSFLGSLSSLPATKLGSIAIQGAIEKAGIPKEEVKEVYMGNVLQGGEGQ 354
VVIVSA RT IGSF G+LS++P ++G+ I+ +++A + EEV EV G+VL G GQ
Sbjct: 8 VVIVSAARTAIGSFNGALSTVPVHEMGTTVIKEVLQRAKVAPEEVSEVIFGHVLTAGCGQ 67
Query: 355 APTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQNLMCGHQDVMVAGGMESMSNVPY 534
PTRQA +GAG+P S P + +C SG+KA+ +A+Q++ G ++VAGGME+MS P+
Sbjct: 68 NPTRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQSIAMGDSTIVVAGGMENMSKAPH 127
Query: 535 VMD-RGTTPYGGVKLEDLIVKDGLTDVYNKIHMGNCAENTAKKLNIPRDEQDTYAINSYT 711
+ R G V L D I+ DGLTD ++ HMG AEN AKK + R+ QD A+ S
Sbjct: 128 LTHLRTGVRMGEVPLADSILCDGLTDAFHNYHMGITAENVAKKWQVSREAQDKVAVLSQN 187
Query: 712 RSKAAWEAGKFRSEVIPVTISVKGKPDTVVKEDEEYKR-VDFNKVPKLKTVFQKE-NGTV 885
R++ A +AG F E++PV +S + K T VK DE + + + KLK F + GTV
Sbjct: 188 RAEHAQKAGHFDKEIVPVLVSSR-KGLTEVKIDEFPRHGSNLEAMGKLKPYFLTDGTGTV 246
Query: 886 TAANASTLNDGXXXXXXXXXXXXKRLNVKPLXXXXXXXXXXXXXXXXXXXXXYAVPKVLK 1065
T ANAS +NDG +R +KPL A+ + +
Sbjct: 247 TPANASGMNDGAAAVVLMKKTEAERRMLKPLARIVSWSQAGVEPSVMGVGPIPAIKQAVA 306
Query: 1066 DAGLKKEDVTMWEVNEAFSVVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSGARIVVHL 1245
AG EDV ++E+NEAF+ V A K L ++P+KVNI+GGA++LGHP+G SG RI+V L
Sbjct: 307 KAGWSLEDVDLFEINEAFAAVSAAIAKELGLNPEKVNIDGGAIALGHPLGASGCRILVTL 366
Query: 1246 AHALKQ--GEYGLASICNGGGGASAMLIQK 1329
H L++ G G+A++C GGG AM +Q+
Sbjct: 367 LHTLERVGGTRGVAALCIGGGMGVAMCVQR 396
>ref|NP_694791.2| acetyl-Coenzyme A acetyltransferase 3 [Mus musculus].
Length = 397
Score = 276 bits (707), Expect = 2e-74
Identities = 161/390 (41%), Positives = 233/390 (59%), Gaps = 5/390 (1%)
Frame = +1
Query: 175 VVIVSATRTPIGSFLGSLSSLPATKLGSIAIQGAIEKAGIPKEEVKEVYMGNVLQGGEGQ 354
VVIVSA RT IGSF G+LS++P ++G+ I+ +++A + EEV EV G+VL G GQ
Sbjct: 8 VVIVSAARTAIGSFNGALSTVPVHEMGTTVIKEVLQRAKVAPEEVSEVIFGHVLTAGCGQ 67
Query: 355 APTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQNLMCGHQDVMVAGGMESMSNVPY 534
PTRQA +GAG+P S P + +C SG+KA+ +A+Q++ G ++VAGGME+MS P+
Sbjct: 68 NPTRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAAQSIAMGDSTIVVAGGMENMSKAPH 127
Query: 535 VMD-RGTTPYGGVKLEDLIVKDGLTDVYNKIHMGNCAENTAKKLNIPRDEQDTYAINSYT 711
+ R G V L D I+ DGLTD ++ HMG AEN AKK + R+ QD A+ S
Sbjct: 128 LTHLRTGVRVGEVPLADSILCDGLTDAFHNYHMGITAENVAKKWQVSREAQDKVAVLSQN 187
Query: 712 RSKAAWEAGKFRSEVIPVTISVKGKPDTVVKEDEEYKR-VDFNKVPKLKTVFQKE-NGTV 885
R++ A +AG F E++PV +S + K T VK DE + + + KLK F + GTV
Sbjct: 188 RAEHAQKAGHFDKEIVPVLVSSR-KGLTEVKIDEFPRHGSNLEAMGKLKPYFLTDGTGTV 246
Query: 886 TAANASTLNDGXXXXXXXXXXXXKRLNVKPLXXXXXXXXXXXXXXXXXXXXXYAVPKVLK 1065
T ANA+ +NDG +R +KPL A+ + +
Sbjct: 247 TTANATGMNDGAAAVVLMKKTEAERRMLKPLARIVSWSQAGVEPSVMGVGPIPAIKQAVA 306
Query: 1066 DAGLKKEDVTMWEVNEAFSVVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSGARIVVHL 1245
AG EDV ++E+NEA++ + +A K L ++P+KVNINGGA++LGHP+G SG RI+V L
Sbjct: 307 KAGWSLEDVDLFEINEAYAALSVAIAKELGLNPEKVNINGGAIALGHPLGASGCRILVTL 366
Query: 1246 AHALKQ--GEYGLASICNGGGGASAMLIQK 1329
H L++ G G+A++C GGG AM +Q+
Sbjct: 367 LHTLERVGGTRGVAALCIGGGMGVAMCVQR 396
>ref|NP_803421.1| 3-ketoacyl-CoA thiolase, mitochondrial [Mus musculus].
Length = 397
Score = 238 bits (607), Expect = 1e-62
Identities = 147/393 (37%), Positives = 212/393 (53%), Gaps = 6/393 (1%)
Frame = +1
Query: 166 LNEVVIVSATRTPIGSFLGSLSSLPATKLGSIAIQGAIEKAGIPKEEVKEVYMGNVLQGG 345
L V IV+A RTP G++ G L AT L A + A+ +P E + V +GNV+Q
Sbjct: 4 LRGVFIVAAKRTPFGAYGGLLKDFSATDLTEFAARAALSAGKVPPETIDSVIVGNVMQSS 63
Query: 346 EGQAP-TRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQNLMCGHQDVMVAGGMESMS 522
A R L G+P T T+N++C SG ++I+ Q + +V++ GG ESMS
Sbjct: 64 SDAAYLARHVGLRVGVPTETGALTLNRLCGSGFQSIVSGCQEICSKDAEVVLCGGTESMS 123
Query: 523 NVPYVMD--RGTTPYG-GVKLEDLIVKDGLTDVYNKIHMGNCAENTAKKLNIPRDEQDTY 693
PY + R T +G +KLED + GLTD + K+ MG AEN A K NI R++ D Y
Sbjct: 124 QSPYCVRNVRFGTKFGLDLKLEDTLWA-GLTDQHVKLPMGMTAENLAAKYNISREDCDRY 182
Query: 694 AINSYTRSKAAWEAGKFRSEVIPVTISVKGKPDTVVKEDEEYKRVDFNKVPKLKTVFQKE 873
A+ S R KAA EAG F E+ P+ + K T+ ++ + ++ KL +VF+K+
Sbjct: 183 ALQSQQRWKAANEAGYFNEEMAPIEVKTKKGKQTMQVDEHARPQTTLEQLQKLPSVFKKD 242
Query: 874 NGTVTAANASTLNDGXXXXXXXXXXXXKRLNVKPLXXXXXXXXXXXXXXXXXXXXXYAVP 1053
GTVTA NAS ++DG K+ N PL A+
Sbjct: 243 -GTVTAGNASGVSDGAGAVIIASEDAVKKHNFTPLARVVGYFVSGCDPTIMGIGPVPAIN 301
Query: 1054 KVLKDAGLKKEDVTMWEVNEAFSVVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSGARI 1233
LK AGL +D+ + +VNEAF+ L+ K L++DP K N++GGA++LGHP+G SG+RI
Sbjct: 302 GALKKAGLSLKDMDLIDVNEAFAPQFLSVQKALDLDPSKTNVSGGAIALGHPLGGSGSRI 361
Query: 1234 VVHLAHALKQ--GEYGLASICNGGGGASAMLIQ 1326
HL H L++ G+Y + S C GGG A++IQ
Sbjct: 362 TAHLVHELRRRGGKYAVGSACIGGGQGIALIIQ 394
>ref|NP_570934.1| 3-ketoacyl-CoA thiolase A, peroxisomal precursor [Mus musculus].
Length = 424
Score = 179 bits (455), Expect = 4e-45
Identities = 126/396 (31%), Positives = 203/396 (51%), Gaps = 13/396 (3%)
Frame = +1
Query: 169 NEVVIVSATRTPIG-SFLGSLSSLPATKLGSIAIQGAIEKAGIPKEEVKEVYMGNVLQGG 345
++VV+V RTPIG + G + +L S + ++ + E++ ++ +GNVL+ G
Sbjct: 36 SDVVVVHGRRTPIGRASRGGFKNTTPDELLSAVLTAVLQDVRLKPEQLGDISVGNVLEPG 95
Query: 346 EGQAPTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQNLMCGHQDVMVAGGMESMSN 525
G R A +G+P + P +T+N+ C+SG++A+ + + G D+ +A G+ESMS
Sbjct: 96 AGAVMARIAQFLSGIPETVPLSTVNRQCSSGLQAVANIAGGIRNGSYDIGMACGVESMSL 155
Query: 526 VPYVMDRGTTPYGGVK---LEDLIVKDGLTDVYNKIHMGNCAENTAKKLNIPRDEQDTYA 696
G G + LE +D LT MG +EN A++ I R +QD +A
Sbjct: 156 ------SGMGNPGNISSRLLESEKARDCLTP------MGMTSENVAERFGISRQKQDDFA 203
Query: 697 INSYTRSKAAWEAGKFRSEVIPVTISV---KGKPDTVVKEDEEYKR--VDFNKVPKLKTV 861
+ S ++ +A G FR+E++PVT +V KG T+ +E R + KLK
Sbjct: 204 LASQQKAASAQSRGCFRAEIVPVTTTVLDDKGDKKTITVSQDEGVRPSTTMQGLAKLKPA 263
Query: 862 FQKENGTVTAANASTLNDGXXXXXXXXXXXXKRLNVKPLXXXXXXXXXXXXXXXXXXXXX 1041
F K+ G+ TA N+S ++DG + L + L
Sbjct: 264 F-KDGGSTTAGNSSQVSDGAAAVLLARRSKAEELGLPILGVLRSYAVVGVPPDVMGIGPA 322
Query: 1042 YAVPKVLKDAGLKKEDVTMWEVNEAFSVVVLANIKMLEIDPQKVNINGGAVSLGHPIGMS 1221
YA+P L+ AGL D+ ++E+NEAF+ + ++ L I +KVN GGA++LGHP+G +
Sbjct: 323 YAIPAALQKAGLTVNDIDIFEINEAFASQAVYCVEKLGIPAEKVNPLGGAIALGHPLGCT 382
Query: 1222 GARIVVHLAHALK---QGEYGLASICNGGG-GASAM 1317
GAR VV L + LK + YG+ S+C G G GA+A+
Sbjct: 383 GARQVVTLLNELKRRGRRAYGVVSMCIGTGMGAAAV 418
>ref|NP_666342.1| 3-ketoacyl-CoA thiolase B, peroxisomal precursor [Mus musculus].
Length = 424
Score = 179 bits (453), Expect = 7e-45
Identities = 125/396 (31%), Positives = 205/396 (51%), Gaps = 13/396 (3%)
Frame = +1
Query: 169 NEVVIVSATRTPIG-SFLGSLSSLPATKLGSIAIQGAIEKAGIPKEEVKEVYMGNVLQGG 345
++VV+V RTPIG + G +L S + ++ + E++ ++ +GNVLQ G
Sbjct: 36 SDVVVVHGRRTPIGRASRGCFKDTTPDELLSAVLTAVLQDVKLKPEQLGDISVGNVLQPG 95
Query: 346 EGQAPTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQNLMCGHQDVMVAGGMESMSN 525
G R A +G+P + P +T+N+ C+SG++A+ + + G D+ +A G+ESM+
Sbjct: 96 AGAIMARIAQFLSGIPETVPLSTVNRQCSSGLQAVANIAGGIRNGSYDIGMACGVESMT- 154
Query: 526 VPYVMDRGTTPYGGVK---LEDLIVKDGLTDVYNKIHMGNCAENTAKKLNIPRDEQDTYA 696
+ RG +G + LE+ +D L I MG +EN A++ + R +QD +A
Sbjct: 155 ---LSQRGN--HGNISSRLLENEKARDCL------IPMGITSENVAERFGVSRQKQDAFA 203
Query: 697 INSYTRSKAAWEAGKFRSEVIPVTISV---KGKPDTVVKEDEEYKR--VDFNKVPKLKTV 861
+ S ++ +A G F +E++PVT +V KG T+ +E R + KLK
Sbjct: 204 LASQQKAASAQSRGCFHAEIVPVTTTVLNDKGDKKTITVSQDEGVRPSTTMQGLAKLKPA 263
Query: 862 FQKENGTVTAANASTLNDGXXXXXXXXXXXXKRLNVKPLXXXXXXXXXXXXXXXXXXXXX 1041
F K+ G+ TA N+S ++DG + L + L
Sbjct: 264 F-KDGGSTTAGNSSQVSDGAAAVLLARRSKAEELGLPILGVLRSYAVVGVPPDVMGIGPA 322
Query: 1042 YAVPKVLKDAGLKKEDVTMWEVNEAFSVVVLANIKMLEIDPQKVNINGGAVSLGHPIGMS 1221
YA+P L+ AGL D+ ++E+NEAF+ + ++ L I +KVN GGA++LGHP+G +
Sbjct: 323 YAIPAALQKAGLTVNDIDIFEINEAFASQAVYCVEKLGIPAEKVNPLGGAIALGHPLGCT 382
Query: 1222 GARIVVHLAHALK---QGEYGLASICNGGG-GASAM 1317
GAR VV L + LK + YG+ S+C G G GA+A+
Sbjct: 383 GARQVVTLLNELKRRGRRAYGVVSMCIGTGMGAAAV 418
>ref|NP_663533.1| trifunctional enzyme subunit beta, mitochondrial precursor [Mus
musculus].
Length = 475
Score = 175 bits (443), Expect = 1e-43
Identities = 135/431 (31%), Positives = 199/431 (46%), Gaps = 39/431 (9%)
Frame = +1
Query: 151 VSKPTLNEVVIVSATRTPIGSFLGSLSSLPATKLGSIAIQGAIEKAGIPKEEVKEVYMGN 330
++KP + +V+V R P S L L A+ G + + IPK+ V + G
Sbjct: 47 LAKPNMKNIVVVEGVRIPFLLSGTSYKDLMPHDLARAALSGLLHRTNIPKDVVDYIIFGT 106
Query: 331 VLQGGEGQAPTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQNLMCGHQDVMVAGGM 510
V+Q + R+A LGAG TP T+ C S +A+ A + G DV+VAGG+
Sbjct: 107 VIQEVKTSNVAREAALGAGFSDKTPAHTVTMACISSNQAMTTAVGLIASGQCDVVVAGGV 166
Query: 511 ESMSNVPY---------VMDRGTTPYGGVKLEDLIVKDGLTDVYNKIH----------MG 633
E MS+VP ++D G +L L+ K L + ++ MG
Sbjct: 167 ELMSDVPIRHSRNMRKMMLDLNKAKTLGQRLS-LLSKFRLNFLSPELPAVAEFSTNETMG 225
Query: 634 NCAENTAKKLNIPRDEQDTYAINSYTRSKAAWEAGKFRSEVIPVTISVKGKPDTVVKEDE 813
+ A+ A + R EQD YA+ S++ +K A + G S+++P V GK DTV K D
Sbjct: 226 HSADRLAAAFAVSRMEQDEYALRSHSLAKKAQDEGHL-SDIVP--FKVPGK-DTVTK-DN 280
Query: 814 EYKRVDFNKVPKLKTVFQKENGTVTAANASTLNDGXXXXXXXXXXXXKRLNVKP-LXXXX 990
+ ++ KLK F K GTVTAAN+S L DG + KP
Sbjct: 281 GIRPSSLEQMAKLKPAFIKPYGTVTAANSSFLTDGASAMLIMSEDRALAMGYKPKAYLRD 340
Query: 991 XXXXXXXXXXXXXXXXXYAVPKVLKDAGLKKEDVTMWEVNEAFSVVVLANIKMLEID--- 1161
YA PKVL+ AGL D+ +E +EAFS +LAN K ++ D
Sbjct: 341 FIYVSQDPKDQLLLGPTYATPKVLEKAGLTMNDIDAFEFHEAFSGQILANFKAMDSDWFA 400
Query: 1162 --------------PQKVNINGGAVSLGHPIGMSGARIVVHLAHALKQ--GEYGLASICN 1293
+K NI GG++SLGHP G +G R+V+ A+ L++ G+Y L + C
Sbjct: 401 QNYMGRKTKVGSPPLEKFNIWGGSLSLGHPFGATGCRLVMAAANRLRKDGGQYALVAACA 460
Query: 1294 GGGGASAMLIQ 1326
GG AM+++
Sbjct: 461 AGGQGHAMIVE 471
>ref|XP_003086283.1| PREDICTED: trifunctional enzyme subunit beta, mitochondrial-like [Mus
musculus].
Length = 330
Score = 127 bits (318), Expect = 3e-29
Identities = 104/322 (32%), Positives = 152/322 (47%), Gaps = 39/322 (12%)
Frame = +1
Query: 478 GHQDVMVAGGMESMSNVPY---------VMDRGTTPYGGVKLEDLIVKDGLTDVYNKIH- 627
G DV+VAGG+E MS+VP ++D G +L L+ K L + ++
Sbjct: 11 GQCDVVVAGGVELMSDVPIRHSRNMRKMMLDLNKAKTLGQRLS-LLSKFRLNFLSPELPA 69
Query: 628 ---------MGNCAENTAKKLNIPRDEQDTYAINSYTRSKAAWEAGKFRSEVIPVTISVK 780
MG+ A+ A + R EQD YA++S++ +K A + G S+++P V
Sbjct: 70 VAEFSTNETMGHSADRLAAAFAVSRMEQDEYALHSHSLAKKAQDEGHL-SDIVP--FKVP 126
Query: 781 GKPDTVVKEDEEYKRVDFNKVPKLKTVFQKENGTVTAANASTLNDGXXXXXXXXXXXXKR 960
GK DTV K D + ++ KLK F K GTVTAAN+S L DG
Sbjct: 127 GK-DTVTK-DNGIRPSSLEQMAKLKPAFIKPYGTVTAANSSFLTDGASAMLIMSEDRALA 184
Query: 961 LNVKP-LXXXXXXXXXXXXXXXXXXXXXYAVPKVLKDAGLKKEDVTMWEVNEAFSVVVLA 1137
+ KP YA PKVL+ AGL D+ +E +EAFS +LA
Sbjct: 185 MGYKPKAYLRDFIYVSQDPKDQLLLGPTYATPKVLEKAGLTMNDIDAFEFHEAFSGQILA 244
Query: 1138 NIKMLEID-----------------PQKVNINGGAVSLGHPIGMSGARIVVHLAHALKQ- 1263
N K ++ D +K NI GG++SLGHP G +G R+V+ A+ L++
Sbjct: 245 NFKAMDSDWFAQNYMGRKTKVGSPPLEKFNIWGGSLSLGHPFGATGCRLVMAAANRLRKD 304
Query: 1264 -GEYGLASICNGGGGASAMLIQ 1326
G+Y L + C GG AM+++
Sbjct: 305 GGQYALVAACAAGGQGHAMIVE 326
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 47,494,897
Number of extensions: 1205117
Number of successful extensions: 3762
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3730
Number of HSP's successfully gapped: 8
Length of query: 515
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 409
Effective length of database: 12,433,743
Effective search space: 5085400887
Effective search space used: 5085400887
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012602
(1546 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000010.1| acetyl-CoA acetyltransferase, mitochondrial pre... 687 0.0
Alignment gi|NP_005882.2| acetyl-CoA acetyltransferase, cytosolic [Homo s... 265 7e-71
Alignment gi|NP_006102.2| 3-ketoacyl-CoA thiolase, mitochondrial [Homo sa... 229 5e-60
Alignment gi|NP_000174.1| trifunctional enzyme subunit beta, mitochondria... 177 2e-44
Alignment gi|NP_001598.1| 3-ketoacyl-CoA thiolase, peroxisomal isoform a ... 176 5e-44
Alignment gi|NP_001123882.1| 3-ketoacyl-CoA thiolase, peroxisomal isoform... 81 3e-15
>ref|NP_000010.1| acetyl-CoA acetyltransferase, mitochondrial precursor [Homo sapiens].
Length = 427
Score = 687 bits (1774), Expect = 0.0
Identities = 358/427 (83%), Positives = 373/427 (87%), Gaps = 1/427 (0%)
Frame = +1
Query: 55 MAVLSVLVR-GACGRSLLLRRRMQEIRYVERSYVSKPTLNEVVIVSATRTPIGSFLGSLS 231
MAVL+ L+R GA RS LLRR +QEIRYVERSYVSKPTL EVVIVSATRTPIGSFLGSLS
Sbjct: 1 MAVLAALLRSGARSRSPLLRRLVQEIRYVERSYVSKPTLKEVVIVSATRTPIGSFLGSLS 60
Query: 232 SLPATKLGSIAIQGAIEKAGIPKEEVKEVYMGNVLQGGEGQAPTRQAVLGAGLPISTPCT 411
LPATKLGSIAIQGAIEKAGIPKEEVKE YMGNVLQGGEGQAPTRQAVLGAGLPISTPCT
Sbjct: 61 LLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQGGEGQAPTRQAVLGAGLPISTPCT 120
Query: 412 TINKVCASGMKAIMMASQNLMCGHQDVMVAGGMESMSNVPYVMDRGTTPYGGVKLEDLIV 591
TINKVCASGMKAIMMASQ+LMCGHQDVMVAGGMESMSNVPYVM+RG+TPYGGVKLEDLIV
Sbjct: 121 TINKVCASGMKAIMMASQSLMCGHQDVMVAGGMESMSNVPYVMNRGSTPYGGVKLEDLIV 180
Query: 592 KDGLTDVYNKIHMGNCAENTAKKLNIPRDEQDTYAINSYTRSKAAWEAGKFRSEVIPVTI 771
KDGLTDVYNKIHMG+CAENTAKKLNI R+EQD YAINSYTRSKAAWEAGKF +EVIPVT+
Sbjct: 181 KDGLTDVYNKIHMGSCAENTAKKLNIARNEQDAYAINSYTRSKAAWEAGKFGNEVIPVTV 240
Query: 772 SVKGKPDTVVKEDEEYKRVDFNKVPKLKTVFQKENGTVTAANASTLNDGXXXXXXXXXXX 951
+VKG+PD VVKEDEEYKRVDF+KVPKLKTVFQKENGTVTAANASTLNDG
Sbjct: 241 TVKGQPDVVVKEDEEYKRVDFSKVPKLKTVFQKENGTVTAANASTLNDGAAALVLMTADA 300
Query: 952 XKRLNVKPLXXXXXXXXXXXXXXXXXXXXXYAVPKVLKDAGLKKEDVTMWEVNEAFSVVV 1131
KRLNV PL YA VLKD GLKKED+ MWEVNEAFS+VV
Sbjct: 301 AKRLNVTPLARIVAFADAAVEPIDFPIAPVYAASMVLKDVGLKKEDIAMWEVNEAFSLVV 360
Query: 1132 LANIKMLEIDPQKVNINGGAVSLGHPIGMSGARIVVHLAHALKQGEYGLASICNGGGGAS 1311
LANIKMLEIDPQKVNINGGAVSLGHPIGMSGARIV HL HALKQGEYGLASICNGGGGAS
Sbjct: 361 LANIKMLEIDPQKVNINGGAVSLGHPIGMSGARIVGHLTHALKQGEYGLASICNGGGGAS 420
Query: 1312 AMLIQKL 1332
AMLIQKL
Sbjct: 421 AMLIQKL 427
>ref|NP_005882.2| acetyl-CoA acetyltransferase, cytosolic [Homo sapiens].
Length = 397
Score = 265 bits (678), Expect = 7e-71
Identities = 157/390 (40%), Positives = 226/390 (57%), Gaps = 5/390 (1%)
Frame = +1
Query: 175 VVIVSATRTPIGSFLGSLSSLPATKLGSIAIQGAIEKAGIPKEEVKEVYMGNVLQGGEGQ 354
VVIVSA RT IGSF G+L+++P LGS I+ +++A + E+V EV G+VL G GQ
Sbjct: 8 VVIVSAARTIIGSFNGALAAVPVQDLGSTVIKEVLKRATVAPEDVSEVIFGHVLAAGCGQ 67
Query: 355 APTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQNLMCGHQDVMVAGGMESMSNVPY 534
P RQA +GAG+P S P + +C SG+KA+ +A Q++ G ++VAGGME+MS P+
Sbjct: 68 NPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAVQSIGIGDSSIVVAGGMENMSKAPH 127
Query: 535 VMD-RGTTPYGGVKLEDLIVKDGLTDVYNKIHMGNCAENTAKKLNIPRDEQDTYAINSYT 711
+ R G + L D I+ DGLTD ++ HMG AEN AKK + R++QD A+ S
Sbjct: 128 LAYLRTGVKIGEMPLTDSILCDGLTDAFHNCHMGITAENVAKKWQVSREDQDKVAVLSQN 187
Query: 712 RSKAAWEAGKFRSEVIPVTISVKGKPDTVVKEDEEYKR-VDFNKVPKLKTVFQKE-NGTV 885
R++ A +AG F E++PV +S + K VK DE + + + KLK F + GTV
Sbjct: 188 RTENAQKAGHFDKEIVPVLVSTR-KGLIEVKTDEFPRHGSNIEAMSKLKPYFLTDGTGTV 246
Query: 886 TAANASTLNDGXXXXXXXXXXXXKRLNVKPLXXXXXXXXXXXXXXXXXXXXXYAVPKVLK 1065
T ANAS +NDG + + PL A+ + +
Sbjct: 247 TPANASGINDGAAAVVLMKKSEADKRGLTPLARIVSWSQVGVEPSIMGIGPIPAIKQAVT 306
Query: 1066 DAGLKKEDVTMWEVNEAFSVVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSGARIVVHL 1245
AG EDV ++E+NEAF+ V A +K L ++P+KVNI GGA++LGHP+G SG RI+V L
Sbjct: 307 KAGWSLEDVDIFEINEAFAAVSAAIVKELGLNPEKVNIEGGAIALGHPLGASGCRILVTL 366
Query: 1246 AHALKQ--GEYGLASICNGGGGASAMLIQK 1329
H L++ G+A++C GGG AM +Q+
Sbjct: 367 LHTLERMGRSRGVAALCIGGGMGIAMCVQR 396
>ref|NP_006102.2| 3-ketoacyl-CoA thiolase, mitochondrial [Homo sapiens].
Length = 397
Score = 229 bits (584), Expect = 5e-60
Identities = 145/393 (36%), Positives = 203/393 (51%), Gaps = 6/393 (1%)
Frame = +1
Query: 166 LNEVVIVSATRTPIGSFLGSLSSLPATKLGSIAIQGAIEKAGIPKEEVKEVYMGNVLQGG 345
L V +V+A RTP G++ G L AT L A + A+ + E V V MGNVLQ
Sbjct: 4 LRGVFVVAAKRTPFGAYGGLLKDFTATDLSEFAAKAALSAGKVSPETVDSVIMGNVLQSS 63
Query: 346 EGQAP-TRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQNLMCGHQDVMVAGGMESMS 522
R L G+P TP TIN++C SG ++I+ Q + +V++ GG ESMS
Sbjct: 64 SDAIYLARHVGLRVGIPKETPALTINRLCGSGFQSIVNGCQEICVKEAEVVLCGGTESMS 123
Query: 523 NVPYVMDR---GTTPYGGVKLEDLIVKDGLTDVYNKIHMGNCAENTAKKLNIPRDEQDTY 693
PY + GT +KLED + LTD + ++ M AEN A K I R+E D Y
Sbjct: 124 QAPYCVRNVRFGTKLGSDIKLEDSLWVS-LTDQHVQLPMAMTAENLAVKHKISREECDKY 182
Query: 694 AINSYTRSKAAWEAGKFRSEVIPVTISVKGKPDTVVKEDEEYKRVDFNKVPKLKTVFQKE 873
A+ S R KAA +AG F E+ P+ + K T+ ++ + ++ KL VF+K+
Sbjct: 183 ALQSQQRWKAANDAGYFNDEMAPIEVKTKKGKQTMQVDEHARPQTTLEQLQKLPPVFKKD 242
Query: 874 NGTVTAANASTLNDGXXXXXXXXXXXXKRLNVKPLXXXXXXXXXXXXXXXXXXXXXYAVP 1053
GTVTA NAS + DG K+ N PL A+
Sbjct: 243 -GTVTAGNASGVADGAGAVIIASEDAVKKHNFTPLARIVGYFVSGCDPSIMGIGPVPAIS 301
Query: 1054 KVLKDAGLKKEDVTMWEVNEAFSVVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSGARI 1233
LK AGL +D+ + EVNEAF+ LA + L++D K N+NGGA++LGHP+G SG+RI
Sbjct: 302 GALKKAGLSLKDMDLVEVNEAFAPQYLAVERSLDLDISKTNVNGGAIALGHPLGGSGSRI 361
Query: 1234 VVHLAHALKQ--GEYGLASICNGGGGASAMLIQ 1326
HL H L++ G+Y + S C GGG A++IQ
Sbjct: 362 TAHLVHELRRRGGKYAVGSACIGGGQGIAVIIQ 394
>ref|NP_000174.1| trifunctional enzyme subunit beta, mitochondrial precursor [Homo
sapiens].
Length = 474
Score = 177 bits (449), Expect = 2e-44
Identities = 137/431 (31%), Positives = 198/431 (45%), Gaps = 39/431 (9%)
Frame = +1
Query: 151 VSKPTLNEVVIVSATRTPIGSFLGSLSSLPATKLGSIAIQGAIEKAGIPKEEVKEVYMGN 330
++KP + VV+V RTP S L L A+ G + + +PKE V + G
Sbjct: 46 LAKPNIRNVVVVDGVRTPFLLSGTSYKDLMPHDLARAALTGLLHRTSVPKEVVDYIIFGT 105
Query: 331 VLQGGEGQAPTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQNLMCGHQDVMVAGGM 510
V+Q + R+A LGAG TP T+ C S +A+ + G DV+VAGG+
Sbjct: 106 VIQEVKTSNVAREAALGAGFSDKTPAHTVTMACISANQAMTTGVGLIASGQCDVIVAGGV 165
Query: 511 ESMSNVP---------YVMDRGTTPYGGVKLEDLIVK----------DGLTDVYNKIHMG 633
E MS+VP ++D G +L LI K +++ MG
Sbjct: 166 ELMSDVPIRHSRKMRKLMLDLNKAKSMGQRL-SLISKFRFNFLAPELPAVSEFSTSETMG 224
Query: 634 NCAENTAKKLNIPRDEQDTYAINSYTRSKAAWEAGKFRSEVIPVTISVKGKPDTVVKEDE 813
+ A+ A + R EQD YA+ S++ +K A + G S+V+P V GK DTV K D
Sbjct: 225 HSADRLAAAFAVSRLEQDEYALRSHSLAKKAQDEG-LLSDVVP--FKVPGK-DTVTK-DN 279
Query: 814 EYKRVDFNKVPKLKTVFQKENGTVTAANASTLNDGXXXXXXXXXXXXKRLNVKP-LXXXX 990
+ ++ KLK F K GTVTAAN+S L DG + KP
Sbjct: 280 GIRPSSLEQMAKLKPAFIKPYGTVTAANSSFLTDGASAMLIMAEEKALAMGYKPKAYLRD 339
Query: 991 XXXXXXXXXXXXXXXXXYAVPKVLKDAGLKKEDVTMWEVNEAFSVVVLANIKMLEID--- 1161
YA PKVL+ AGL D+ +E +EAFS +LAN K ++ D
Sbjct: 340 FMYVSQDPKDQLLLGPTYATPKVLEKAGLTMNDIDAFEFHEAFSGQILANFKAMDSDWFA 399
Query: 1162 --------------PQKVNINGGAVSLGHPIGMSGARIVVHLAHALKQ--GEYGLASICN 1293
+K N GG++SLGHP G +G R+V+ A+ L++ G+YGL + C
Sbjct: 400 ENYMGRKTKVGLPPLEKFNNWGGSLSLGHPFGATGCRLVMAAANRLRKEGGQYGLVAACA 459
Query: 1294 GGGGASAMLIQ 1326
GG AM+++
Sbjct: 460 AGGQGHAMIVE 470
>ref|NP_001598.1| 3-ketoacyl-CoA thiolase, peroxisomal isoform a [Homo sapiens].
Length = 424
Score = 176 bits (446), Expect = 5e-44
Identities = 127/392 (32%), Positives = 203/392 (51%), Gaps = 10/392 (2%)
Frame = +1
Query: 172 EVVIVSATRTPI-GSFLGSLSSLPATKLGSIAIQGAIEKAGIPKEEVKEVYMGNVLQGGE 348
+VV+V RT I + G +L S + ++ + E++ ++ +GNVLQ G
Sbjct: 37 DVVVVHGRRTAICRAGRGGFKDTTPDELLSAVMTAVLKDVNLRPEQLGDICVGNVLQPGA 96
Query: 349 GQAPTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQNLMCGHQDVMVAGGMESMSNV 528
G R A + +P + P +T+N+ C+SG++A+ + + G D+ +A G+ESMS
Sbjct: 97 GAIMARIAQFLSDIPETVPLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVESMS-- 154
Query: 529 PYVMDRGTTPYGGVKLEDLIVKDGLTDVYNKIHMGNCAENTAKKLNIPRDEQDTYAINSY 708
+ DRG G L+ K+ D I MG +EN A++ I R++QDT+A+ S
Sbjct: 155 --LADRGNP---GNITSRLMEKEKARDCL--IPMGITSENVAERFGISREKQDTFALASQ 207
Query: 709 TRSKAAWEAGKFRSEVIPVTISV---KG-KPDTVVKEDEEYK-RVDFNKVPKLKTVFQKE 873
++ A G F++E++PVT +V KG K V +DE + + KLK F+K+
Sbjct: 208 QKAARAQSKGCFQAEIVPVTTTVHDDKGTKRSITVTQDEGIRPSTTMEGLAKLKPAFKKD 267
Query: 874 NGTVTAANASTLNDGXXXXXXXXXXXXKRLNVKPLXXXXXXXXXXXXXXXXXXXXXYAVP 1053
G+ TA N+S ++DG + L + L YA+P
Sbjct: 268 -GSTTAGNSSQVSDGAAAILLARRSKAEELGLPILGVLRSYAVVGVPPDIMGIGPAYAIP 326
Query: 1054 KVLKDAGLKKEDVTMWEVNEAFSVVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSGARI 1233
L+ AGL DV ++E+NEAF+ ++ L + P+KVN GGAV+LGHP+G +GAR
Sbjct: 327 VALQKAGLTVSDVDIFEINEAFASQAAYCVEKLRLPPEKVNPLGGAVALGHPLGCTGARQ 386
Query: 1234 VVHLAHALK---QGEYGLASICNGGG-GASAM 1317
V+ L + LK + YG+ S+C G G GA+A+
Sbjct: 387 VITLLNELKRRGKRAYGVVSMCIGTGMGAAAV 418
>ref|NP_001123882.1| 3-ketoacyl-CoA thiolase, peroxisomal isoform b [Homo sapiens].
Length = 331
Score = 80.9 bits (198), Expect = 3e-15
Identities = 63/253 (24%), Positives = 111/253 (43%), Gaps = 6/253 (2%)
Frame = +1
Query: 172 EVVIVSATRTPI-GSFLGSLSSLPATKLGSIAIQGAIEKAGIPKEEVKEVYMGNVLQGGE 348
+VV+V RT I + G +L S + ++ + E++ ++ +GNVLQ G
Sbjct: 37 DVVVVHGRRTAICRAGRGGFKDTTPDELLSAVMTAVLKDVNLRPEQLGDICVGNVLQPGA 96
Query: 349 GQAPTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQNLMCGHQDVMVAGGMESMSNV 528
G R A + +P + P +T+N+ C+SG++A+ + + G D+ +A G+ S
Sbjct: 97 GAIMARIAQFLSDIPETVPLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMACGITS---- 152
Query: 529 PYVMDRGTTPYGGVKLEDLIVKDGLTDVYNKIHMGNCAENTAKKLNIPRDEQDTYAINSY 708
EN A++ I R++QDT+A+ S
Sbjct: 153 --------------------------------------ENVAERFGISREKQDTFALASQ 174
Query: 709 TRSKAAWEAGKFRSEVIPVTISV---KG-KPDTVVKEDEEYK-RVDFNKVPKLKTVFQKE 873
++ A G F++E++PVT +V KG K V +DE + + KLK F+K+
Sbjct: 175 QKAARAQSKGCFQAEIVPVTTTVHDDKGTKRSITVTQDEGIRPSTTMEGLAKLKPAFKKD 234
Query: 874 NGTVTAANASTLN 912
T S ++
Sbjct: 235 GSTTAGLTVSDVD 247
Score = 71.6 bits (174), Expect = 2e-12
Identities = 40/87 (45%), Positives = 58/87 (66%), Gaps = 4/87 (4%)
Frame = +1
Query: 1069 AGLKKEDVTMWEVNEAFSVVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSGARIVVHLA 1248
AGL DV ++E+NEAF+ ++ L + P+KVN GGAV+LGHP+G +GAR V+ L
Sbjct: 239 AGLTVSDVDIFEINEAFASQAAYCVEKLRLPPEKVNPLGGAVALGHPLGCTGARQVITLL 298
Query: 1249 HALK---QGEYGLASICNGGG-GASAM 1317
+ LK + YG+ S+C G G GA+A+
Sbjct: 299 NELKRRGKRAYGVVSMCIGTGMGAAAV 325
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 55,535,475
Number of extensions: 1407802
Number of successful extensions: 4309
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4253
Number of HSP's successfully gapped: 7
Length of query: 515
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 408
Effective length of database: 14,770,016
Effective search space: 6026166528
Effective search space used: 6026166528
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012602
(1546 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 486 e-134
>Sscrofa_Chr09
|| Length = 153670197
Score = 486 bits (245), Expect = e-134
Identities = 289/311 (92%)
Strand = Plus / Plus
Query: 1214 ggatgtctggagccaggattgtcgttcacttggctcatgccttgaagcaaggagaatatg 1273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40621773 ggatgtctggagccaggattgtcgttcacttggctcatgccttgaagcaaggagaatatg 40621832
Query: 1274 gtcttgccagtatttgcaacggaggaggaggggcttctgccatgctgatccagaagctgt 1333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40621833 gtcttgccagtatttgcaacggaggaggaggggcttctgccatgctgatccagaagctgt 40621892
Query: 1334 agacaacttcttttgtctaaggtgacagccctgtgtagctagaaatgcctgctatgatcc 1393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40621893 agacaacttcttttgtctaaggtgacagccctgtgtagctagaaatgcctgctatgatcc 40621952
Query: 1394 aggtgactgattaccctgaatcggcttgtattaaaatgatgtttcattgatttaactctt 1453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40621953 aggtgactgattaccctgaatcggcttgtattaaaatgatgtttcattgatttaactctt 40622012
Query: 1454 tnnnnnnnnnnnnnnnnnnnnnncaaatccccaaacattttgagattacaaatgtatttt 1513
| |||||||||||||||||||||||||||||||||||||
Sbjct: 40622013 tgtaaaaaataatataaaaaaatcaaatccccaaacattttgagattacaaatgtatttt 40622072
Query: 1514 tcttctgcttt 1524
|||||||||||
Sbjct: 40622073 tcttctgcttt 40622083
Score = 319 bits (161), Expect = 3e-84
Identities = 161/161 (100%)
Strand = Plus / Plus
Query: 1055 aggttctaaaagatgcaggattgaaaaaagaagatgttacaatgtgggaagtaaatgaag 1114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40621185 aggttctaaaagatgcaggattgaaaaaagaagatgttacaatgtgggaagtaaatgaag 40621244
Query: 1115 cctttagtgtggttgttttagcaaacattaaaatgctagagattgatccccaaaaagtga 1174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40621245 cctttagtgtggttgttttagcaaacattaaaatgctagagattgatccccaaaaagtga 40621304
Query: 1175 atatcaatggaggagctgtttctcttggacatccaattggg 1215
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 40621305 atatcaatggaggagctgtttctcttggacatccaattggg 40621345
Score = 305 bits (154), Expect = 4e-80
Identities = 154/154 (100%)
Strand = Plus / Plus
Query: 630 gggtaactgtgctgaaaatactgcaaagaagctgaatattccacgtgatgaacaagacac 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40614115 gggtaactgtgctgaaaatactgcaaagaagctgaatattccacgtgatgaacaagacac 40614174
Query: 690 ctacgctattaactcctacaccagaagtaaagcagcatgggaagccggaaaatttcgaag 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40614175 ctacgctattaactcctacaccagaagtaaagcagcatgggaagccggaaaatttcgaag 40614234
Query: 750 tgaagttattcccgtcacaatttcagtaaaaggt 783
||||||||||||||||||||||||||||||||||
Sbjct: 40614235 tgaagttattcccgtcacaatttcagtaaaaggt 40614268
Score = 293 bits (148), Expect = 1e-76
Identities = 148/148 (100%)
Strand = Plus / Plus
Query: 484 caggatgtaatggtggcaggtggaatggagagcatgtccaacgtcccctatgtgatggac 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40613308 caggatgtaatggtggcaggtggaatggagagcatgtccaacgtcccctatgtgatggac 40613367
Query: 544 agaggaacaacaccctacggtggggtaaagcttgaagatttgattgtaaaagatgggctc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40613368 agaggaacaacaccctacggtggggtaaagcttgaagatttgattgtaaaagatgggctc 40613427
Query: 604 actgatgtctacaataaaattcatatgg 631
||||||||||||||||||||||||||||
Sbjct: 40613428 actgatgtctacaataaaattcatatgg 40613455
Score = 246 bits (124), Expect = 3e-62
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 1 ccgtgcgcacttgcgtctctccgtcacggattctctgttttgggccctacaaccatggcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40601663 ccgtgcgcacttgcgtctctccgtcacggattctctgttttgggccctacaaccatggcg 40601722
Query: 61 gtgctgtcggtccttgtgcgcggcgcctgcgggcgcagcctcctgcttcgaaggcggatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40601723 gtgctgtcggtccttgtgcgcggcgcctgcgggcgcagcctcctgcttcgaaggcggatg 40601782
Query: 121 cagg 124
||||
Sbjct: 40601783 cagg 40601786
Score = 236 bits (119), Expect = 3e-59
Identities = 119/119 (100%)
Strand = Plus / Plus
Query: 172 gaagtggtcatagtaagtgctacaaggacgcccattggatcctttctaggcagcctttcc 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40609121 gaagtggtcatagtaagtgctacaaggacgcccattggatcctttctaggcagcctttcc 40609180
Query: 232 tctctgccagccactaagctgggttccattgctattcagggagccattgaaaaggcagg 290
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40609181 tctctgccagccactaagctgggttccattgctattcagggagccattgaaaaggcagg 40609239
Score = 228 bits (115), Expect = 7e-57
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 877 ggtacagtaacagctgccaatgccagcacattgaatgatggagcagctgctgtggttctt 936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40617179 ggtacagtaacagctgccaatgccagcacattgaatgatggagcagctgctgtggttctt 40617238
Query: 937 atgactgcagatgcagccaagaggctcaatgttaaaccactagcaagaatagcag 991
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40617239 atgactgcagatgcagccaagaggctcaatgttaaaccactagcaagaatagcag 40617293
Score = 206 bits (104), Expect = 3e-50
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 384 aggcttacctatttctactccgtgcaccacgataaacaaagtttgtgcctcaggaatgaa 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40610388 aggcttacctatttctactccgtgcaccacgataaacaaagtttgtgcctcaggaatgaa 40610447
Query: 444 agccatcatgatggcctctcagaatcttatgtgtggacatcagg 487
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40610448 agccatcatgatggcctctcagaatcttatgtgtggacatcagg 40610491
Score = 198 bits (100), Expect = 6e-48
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 780 aggtaaaccagatacagtggtcaaagaagatgaagaatataaacgtgttgattttaataa 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40615087 aggtaaaccagatacagtggtcaaagaagatgaagaatataaacgtgttgattttaataa 40615146
Query: 840 agttccaaagctgaagacggttttccaaaaagaaaacggt 879
||||||||||||||||||||||||||||||||||||||||
Sbjct: 40615147 agttccaaagctgaagacggttttccaaaaagaaaacggt 40615186
Score = 196 bits (99), Expect = 3e-47
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 288 agggattccaaaagaagaagtgaaagaagtgtacatgggcaatgttctgcagggaggaga 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40610063 agggattccaaaagaagaagtgaaagaagtgtacatgggcaatgttctgcagggaggaga 40610122
Query: 348 aggacaagcccctacaaggcaagcggtactgggtgcagg 386
|||||||||||||||||||||||||||||||||||||||
Sbjct: 40610123 aggacaagcccctacaaggcaagcggtactgggtgcagg 40610161
Score = 137 bits (69), Expect = 2e-29
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 990 agcatttgctgatgctgctgtagatcctattgattttccaattgcacctgcatatgctgt 1049
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40619138 agcatttgctgatgctgctgtagatcctattgattttccaattgcacctgcatatgctgt 40619197
Query: 1050 acctaaggt 1058
|||||||||
Sbjct: 40619198 acctaaggt 40619206
Score = 107 bits (54), Expect = 2e-20
Identities = 54/54 (100%)
Strand = Plus / Plus
Query: 119 tgcaggaaataagatatgtggagcgaagttatgtatcaaaacccactttgaatg 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40608126 tgcaggaaataagatatgtggagcgaagttatgtatcaaaacccactttgaatg 40608179
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 50,876,212
Number of extensions: 304
Number of successful extensions: 304
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 304
Number of HSP's successfully gapped: 13
Length of query: 1546
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1525
Effective length of database: 2,808,413,156
Effective search space: 4282830062900
Effective search space used: 4282830062900
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)