Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012603
(1047 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_866992.1| PREDICTED: similar to Metal-response element-bi... 503 e-149
Alignment gi|XP_537073.2| PREDICTED: similar to Metal-response element-bi... 503 e-149
Alignment gi|XP_867002.1| PREDICTED: similar to Metal-response element-bi... 503 e-149
Alignment gi|XP_866952.1| PREDICTED: similar to Metal-response element-bi... 488 e-145
Alignment gi|XP_866916.1| PREDICTED: similar to Metal-response element-bi... 300 2e-88
Alignment gi|XP_851239.1| PREDICTED: similar to PHD finger protein 1 (PHF... 239 4e-67
Alignment gi|XP_863324.1| PREDICTED: similar to PHD finger protein 1 isof... 239 4e-67
Alignment gi|XP_863411.1| PREDICTED: similar to PHD finger protein 1 isof... 239 4e-67
Alignment gi|XP_863457.1| PREDICTED: similar to PHD finger protein 1 isof... 239 4e-67
Alignment gi|XP_538862.2| PREDICTED: similar to PHD finger protein 1 isof... 239 4e-67
>ref|XP_866992.1| PREDICTED: similar to Metal-response element-binding transcription
factor 2 (Metal-response element DNA-binding protein
M96) isoform 8 [Canis familiaris].
Length = 596
Score = 503 bits (1294), Expect(2) = e-149
Identities = 232/235 (98%), Positives = 232/235 (98%)
Frame = +3
Query: 285 MRDSTGAGNSLVHKRSPLRRNQKTPASLTKLSLQDGHKVKKPACKFEEGQDVLARWSDGL 464
MRDSTGAGNSLVHKRSPLRRNQK P SLTKLSLQDGHKVKKPACKFEEGQDVLARWSDGL
Sbjct: 1 MRDSTGAGNSLVHKRSPLRRNQKAPTSLTKLSLQDGHKVKKPACKFEEGQDVLARWSDGL 60
Query: 465 FYLGTIKKINILKQSCFIIFEDSSKSWVLWKDIQTGATGSGEMVCTICQEEYSEAPNEMV 644
FYLGTIKKINILKQSCFIIFEDSSKSWVLWKDIQTGATGSGEMVCTICQEEYSEAPNEMV
Sbjct: 61 FYLGTIKKINILKQSCFIIFEDSSKSWVLWKDIQTGATGSGEMVCTICQEEYSEAPNEMV 120
Query: 645 ICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTKRGGALKKGPNAKALQVMKQ 824
ICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTKRGGALKKGPNAKALQVMKQ
Sbjct: 121 ICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTKRGGALKKGPNAKALQVMKQ 180
Query: 825 TLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCKCKQWFHEACVPCLQ 989
TLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCKCKQWFHEACV CLQ
Sbjct: 181 TLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCKCKQWFHEACVQCLQ 235
Score = 45.4 bits (106), Expect(2) = e-149
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +2
Query: 989 KPMLFGDRFYTFICSVCSS 1045
KPMLFGDRFYTFICSVCSS
Sbjct: 236 KPMLFGDRFYTFICSVCSS 254
>ref|XP_537073.2| PREDICTED: similar to Metal-response element-binding transcription
factor 2 (Metal-response element DNA-binding protein
M96) isoform 1 [Canis familiaris].
Length = 593
Score = 503 bits (1294), Expect(2) = e-149
Identities = 232/235 (98%), Positives = 232/235 (98%)
Frame = +3
Query: 285 MRDSTGAGNSLVHKRSPLRRNQKTPASLTKLSLQDGHKVKKPACKFEEGQDVLARWSDGL 464
MRDSTGAGNSLVHKRSPLRRNQK P SLTKLSLQDGHKVKKPACKFEEGQDVLARWSDGL
Sbjct: 1 MRDSTGAGNSLVHKRSPLRRNQKAPTSLTKLSLQDGHKVKKPACKFEEGQDVLARWSDGL 60
Query: 465 FYLGTIKKINILKQSCFIIFEDSSKSWVLWKDIQTGATGSGEMVCTICQEEYSEAPNEMV 644
FYLGTIKKINILKQSCFIIFEDSSKSWVLWKDIQTGATGSGEMVCTICQEEYSEAPNEMV
Sbjct: 61 FYLGTIKKINILKQSCFIIFEDSSKSWVLWKDIQTGATGSGEMVCTICQEEYSEAPNEMV 120
Query: 645 ICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTKRGGALKKGPNAKALQVMKQ 824
ICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTKRGGALKKGPNAKALQVMKQ
Sbjct: 121 ICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTKRGGALKKGPNAKALQVMKQ 180
Query: 825 TLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCKCKQWFHEACVPCLQ 989
TLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCKCKQWFHEACV CLQ
Sbjct: 181 TLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCKCKQWFHEACVQCLQ 235
Score = 45.4 bits (106), Expect(2) = e-149
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +2
Query: 989 KPMLFGDRFYTFICSVCSS 1045
KPMLFGDRFYTFICSVCSS
Sbjct: 236 KPMLFGDRFYTFICSVCSS 254
>ref|XP_867002.1| PREDICTED: similar to Metal-response element-binding transcription
factor 2 (Metal-response element DNA-binding protein
M96) isoform 9 [Canis familiaris].
Length = 536
Score = 503 bits (1294), Expect(2) = e-149
Identities = 232/235 (98%), Positives = 232/235 (98%)
Frame = +3
Query: 285 MRDSTGAGNSLVHKRSPLRRNQKTPASLTKLSLQDGHKVKKPACKFEEGQDVLARWSDGL 464
MRDSTGAGNSLVHKRSPLRRNQK P SLTKLSLQDGHKVKKPACKFEEGQDVLARWSDGL
Sbjct: 1 MRDSTGAGNSLVHKRSPLRRNQKAPTSLTKLSLQDGHKVKKPACKFEEGQDVLARWSDGL 60
Query: 465 FYLGTIKKINILKQSCFIIFEDSSKSWVLWKDIQTGATGSGEMVCTICQEEYSEAPNEMV 644
FYLGTIKKINILKQSCFIIFEDSSKSWVLWKDIQTGATGSGEMVCTICQEEYSEAPNEMV
Sbjct: 61 FYLGTIKKINILKQSCFIIFEDSSKSWVLWKDIQTGATGSGEMVCTICQEEYSEAPNEMV 120
Query: 645 ICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTKRGGALKKGPNAKALQVMKQ 824
ICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTKRGGALKKGPNAKALQVMKQ
Sbjct: 121 ICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTKRGGALKKGPNAKALQVMKQ 180
Query: 825 TLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCKCKQWFHEACVPCLQ 989
TLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCKCKQWFHEACV CLQ
Sbjct: 181 TLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCKCKQWFHEACVQCLQ 235
Score = 45.4 bits (106), Expect(2) = e-149
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +2
Query: 989 KPMLFGDRFYTFICSVCSS 1045
KPMLFGDRFYTFICSVCSS
Sbjct: 236 KPMLFGDRFYTFICSVCSS 254
>ref|XP_866952.1| PREDICTED: similar to Metal-response element-binding transcription
factor 2 (Metal-response element DNA-binding protein
M96) isoform 4 [Canis familiaris].
Length = 400
Score = 488 bits (1256), Expect(2) = e-145
Identities = 231/248 (93%), Positives = 232/248 (93%), Gaps = 13/248 (5%)
Frame = +3
Query: 285 MRDSTGAGNSLVHKRSPLRRNQKTPASLTKLSLQDGHKVKKPACKFEEGQDVLARWSDGL 464
MRDSTGAGNSLVHKRSPLRRNQK P SLTKLSLQDGHKVKKPACKFEEGQDVLARWSDGL
Sbjct: 1 MRDSTGAGNSLVHKRSPLRRNQKAPTSLTKLSLQDGHKVKKPACKFEEGQDVLARWSDGL 60
Query: 465 FYLGTIKK--------INILKQSCFIIFEDSSKSWVLWKDIQTG-----ATGSGEMVCTI 605
FYLGTIKK INILKQSCFIIFEDSSKSWVLWKDIQTG +TGSGEMVCTI
Sbjct: 61 FYLGTIKKASYLYISFINILKQSCFIIFEDSSKSWVLWKDIQTGRQEEKSTGSGEMVCTI 120
Query: 606 CQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTKRGGALK 785
CQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTKRGGALK
Sbjct: 121 CQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTKRGGALK 180
Query: 786 KGPNAKALQVMKQTLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCKCKQWFH 965
KGPNAKALQVMKQTLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCKCKQWFH
Sbjct: 181 KGPNAKALQVMKQTLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCKCKQWFH 240
Query: 966 EACVPCLQ 989
EACV CLQ
Sbjct: 241 EACVQCLQ 248
Score = 45.4 bits (106), Expect(2) = e-145
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +2
Query: 989 KPMLFGDRFYTFICSVCSS 1045
KPMLFGDRFYTFICSVCSS
Sbjct: 249 KPMLFGDRFYTFICSVCSS 267
>ref|XP_866916.1| PREDICTED: similar to Metal-response element-binding transcription
factor 2 (Metal-response element DNA-binding protein
M96) isoform 2 [Canis familiaris].
Length = 491
Score = 300 bits (767), Expect(2) = 2e-88
Identities = 132/133 (99%), Positives = 132/133 (99%)
Frame = +3
Query: 591 MVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTKR 770
MVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTKR
Sbjct: 1 MVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTKR 60
Query: 771 GGALKKGPNAKALQVMKQTLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCKC 950
GGALKKGPNAKALQVMKQTLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCKC
Sbjct: 61 GGALKKGPNAKALQVMKQTLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCKC 120
Query: 951 KQWFHEACVPCLQ 989
KQWFHEACV CLQ
Sbjct: 121 KQWFHEACVQCLQ 133
Score = 45.4 bits (106), Expect(2) = 2e-88
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +2
Query: 989 KPMLFGDRFYTFICSVCSS 1045
KPMLFGDRFYTFICSVCSS
Sbjct: 134 KPMLFGDRFYTFICSVCSS 152
>ref|XP_851239.1| PREDICTED: similar to PHD finger protein 1 (PHF1 protein) isoform 2
[Canis familiaris].
Length = 567
Score = 239 bits (611), Expect(2) = 4e-67
Identities = 107/193 (55%), Positives = 130/193 (67%)
Frame = +3
Query: 408 PACKFEEGQDVLARWSDGLFYLGTIKKINILKQSCFIIFEDSSKSWVLWKDIQTGATGSG 587
P + EGQDVLARW+DGL YLGTIKK++ ++ C + FED S+ VLWKDI A
Sbjct: 27 PRPRLWEGQDVLARWTDGLLYLGTIKKVDSSREVCLVQFEDDSQFLVLWKDISPAALPGE 86
Query: 588 EMVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTK 767
E++C +C+ E N +V C+KC YHQ CH P + W+CRQCVFA TK
Sbjct: 87 ELLCCVCRSETVVPGNRLVSCEKCRHAYHQDCHVPRAPAPGEGEGTSWVCRQCVFAIATK 146
Query: 768 RGGALKKGPNAKALQVMKQTLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCK 947
RGGALKKGP A+A+ MK +LPY + L+WDAGH +N QQ YCYCGGPG+W LKMLQC
Sbjct: 147 RGGALKKGPYARAMLGMKLSLPYGLKGLDWDAGHLSNRQQSYCYCGGPGEWNLKMLQCQS 206
Query: 948 CKQWFHEACVPCL 986
C QWFHEAC CL
Sbjct: 207 CLQWFHEACTQCL 219
Score = 34.7 bits (78), Expect(2) = 4e-67
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +2
Query: 986 SKPMLFGDRFYTFICSVC 1039
SKP+L+GDRFY F C VC
Sbjct: 220 SKPLLYGDRFYEFECCVC 237
>ref|XP_863324.1| PREDICTED: similar to PHD finger protein 1 isoform a isoform 3
[Canis familiaris].
Length = 499
Score = 239 bits (611), Expect(2) = 4e-67
Identities = 107/193 (55%), Positives = 130/193 (67%)
Frame = +3
Query: 408 PACKFEEGQDVLARWSDGLFYLGTIKKINILKQSCFIIFEDSSKSWVLWKDIQTGATGSG 587
P + EGQDVLARW+DGL YLGTIKK++ ++ C + FED S+ VLWKDI A
Sbjct: 27 PRPRLWEGQDVLARWTDGLLYLGTIKKVDSSREVCLVQFEDDSQFLVLWKDISPAALPGE 86
Query: 588 EMVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTK 767
E++C +C+ E N +V C+KC YHQ CH P + W+CRQCVFA TK
Sbjct: 87 ELLCCVCRSETVVPGNRLVSCEKCRHAYHQDCHVPRAPAPGEGEGTSWVCRQCVFAIATK 146
Query: 768 RGGALKKGPNAKALQVMKQTLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCK 947
RGGALKKGP A+A+ MK +LPY + L+WDAGH +N QQ YCYCGGPG+W LKMLQC
Sbjct: 147 RGGALKKGPYARAMLGMKLSLPYGLKGLDWDAGHLSNRQQSYCYCGGPGEWNLKMLQCQS 206
Query: 948 CKQWFHEACVPCL 986
C QWFHEAC
Animal-Genome cDNA 20110601C-012603
Animal-Genome cDNA 20110601C-012603
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012603
(1047 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001040021.1| metal-response element-binding transcription... 300 2e-88
Alignment gi|XP_002690007.1| PREDICTED: PHD finger protein 19 [Bos taurus]. 246 1e-69
Alignment gi|NP_001179644.1| PHD finger protein 19 [Bos taurus]. 246 1e-69
Alignment gi|NP_001092384.2| PHD finger protein 1 [Bos taurus]. 240 3e-67
Alignment gi|XP_002693122.1| PREDICTED: myeloid/lymphoid or mixed-lineage... 55 1e-07
Alignment gi|XP_585092.4| PREDICTED: myeloid/lymphoid or mixed-lineage le... 55 1e-07
Alignment gi|XP_002700112.1| PREDICTED: PHD finger protein 16 [Bos taurus]. 51 2e-06
Alignment gi|XP_583146.3| PREDICTED: PHD finger protein 16 [Bos taurus]. 51 2e-06
Alignment gi|NP_001015559.1| protein Jade-1 [Bos taurus]. 50 4e-06
>ref|NP_001040021.1| metal-response element-binding transcription factor 2 [Bos taurus].
Length = 491
Score = 300 bits (767), Expect(2) = 2e-88
Identities = 132/133 (99%), Positives = 132/133 (99%)
Frame = +3
Query: 591 MVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTKR 770
MVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTKR
Sbjct: 1 MVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTKR 60
Query: 771 GGALKKGPNAKALQVMKQTLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCKC 950
GGALKKGPNAKALQVMKQTLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCKC
Sbjct: 61 GGALKKGPNAKALQVMKQTLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCKC 120
Query: 951 KQWFHEACVPCLQ 989
KQWFHEACV CLQ
Sbjct: 121 KQWFHEACVQCLQ 133
Score = 45.4 bits (106), Expect(2) = 2e-88
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +2
Query: 989 KPMLFGDRFYTFICSVCSS 1045
KPMLFGDRFYTFICSVCSS
Sbjct: 134 KPMLFGDRFYTFICSVCSS 152
>ref|XP_002690007.1| PREDICTED: PHD finger protein 19 [Bos taurus].
Length = 692
Score = 246 bits (627), Expect(2) = 1e-69
Identities = 115/233 (49%), Positives = 146/233 (62%)
Frame = +3
Query: 288 RDSTGAGNSLVHKRSPLRRNQKTPASLTKLSLQDGHKVKKPACKFEEGQDVLARWSDGLF 467
RDS GA + L +K + + ++KL+ EGQ VL RW+DGL+
Sbjct: 123 RDSYGATSHLPNKGALAKAKNNFKDLMSKLT---------------EGQYVLCRWTD CL
Sbjct: 207 CLQWFHEACTQCL 219
Score = 34.7 bits (78), Expect(2) = 4e-67
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +2
Query: 986 SKPMLFGDRFYTFICSVC 1039
SKP+L+GDRFY F C VC
Sbjct: 220 SKPLLYGDRFYEFECCVC 237
>ref|XP_863411.1| PREDICTED: similar to PHD finger protein 1 isoform 6 [Canis
familiaris].
Length = 495
Score = 239 bits (611), Expect(2) = 4e-67
Identities = 107/193 (55%), Positives = 130/193 (67%)
Frame = +3
Query: 408 PACKFEEGQDVLARWSDGLFYLGTIKKINILKQSCFIIFEDSSKSWVLWKDIQTGATGSG 587
P + EGQDVLARW+DGL YLGTIKK++ ++ C + FED S+ VLWKDI A
Sbjct: 27 PRPRLWEGQDVLARWTDGLLYLGTIKKVDSSREVCLVQFEDDSQFLVLWKDISPAALPGE 86
Query: 588 EMVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTK 767
E++C +C+ E N +V C+KC YHQ CH P + W+CRQCVFA TK
Sbjct: 87 ELLCCVCRSETVVPGNRLVSCEKCRHAYHQDCHVPRAPAPGEGEGTSWVCRQCVFAIATK 146
Query: 768 RGGALKKGPNAKALQVMKQTLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCK 947
RGGALKKGP A+A+ MK +LPY + L+WDAGH +N QQ YCYCGGPG+W LKMLQC
Sbjct: 147 RGGALKKGPYARAMLGMKLSLPYGLKGLDWDAGHLSNRQQSYCYCGGPGEWNLKMLQCQS 206
Query: 948 CKQWFHEACVPCL 986
C QWFHEAC CL
Sbjct: 207 CLQWFHEACTQCL 219
Score = 34.7 bits (78), Expect(2) = 4e-67
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +2
Query: 986 SKPMLFGDRFYTFICSVC 1039
SKP+L+GDRFY F C VC
Sbjct: 220 SKPLLYGDRFYEFECCVC 237
>ref|XP_863457.1| PREDICTED: similar to PHD finger protein 1 isoform a isoform 7
[Canis familiaris].
Length = 457
Score = 239 bits (611), Expect(2) = 4e-67
Identities = 107/193 (55%), Positives = 130/193 (67%)
Frame = +3
Query: 408 PACKFEEGQDVLARWSDGLFYLGTIKKINILKQSCFIIFEDSSKSWVLWKDIQTGATGSG 587
P + EGQDVLARW+DGL YLGTIKK++ ++ C + FED S+ VLWKDI A
Sbjct: 27 PRPRLWEGQDVLARWTDGLLYLGTIKKVDSSREVCLVQFEDDSQFLVLWKDISPAALPGE 86
Query: 588 EMVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTK 767
E++C +C+ E N +V C+KC YHQ CH P + W+CRQCVFA TK
Sbjct: 87 ELLCCVCRSETVVPGNRLVSCEKCRHAYHQDCHVPRAPAPGEGEGTSWVCRQCVFAIATK 146
Query: 768 RGGALKKGPNAKALQVMKQTLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCK 947
RGGALKKGP A+A+ MK +LPY + L+WDAGH +N QQ YCYCGGPG+W LKMLQC
Sbjct: 147 RGGALKKGPYARAMLGMKLSLPYGLKGLDWDAGHLSNRQQSYCYCGGPGEWNLKMLQCQS 206
Query: 948 CKQWFHEACVPCL 986
C QWFHEAC CL
Sbjct: 207 CLQWFHEACTQCL 219
Score = 34.7 bits (78), Expect(2) = 4e-67
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +2
Query: 986 SKPMLFGDRFYTFICSVC 1039
SKP+L+GDRFY F C VC
Sbjct: 220 SKPLLYGDRFYEFECCVC 237
>ref|XP_538862.2| PREDICTED: similar to PHD finger protein 1 isoform a isoform 1
[Canis familiaris].
Length = 385
Score = 239 bits (611), Expect(2) = 4e-67
Identities = 107/193 (55%), Positives = 130/193 (67%)
Frame = +3
Query: 408 PACKFEEGQDVLARWSDGLFYLGTIKKINILKQSCFIIFEDSSKSWVLWKDIQTGATGSG 587
P + EGQDVLARW+DGL YLGTIKK++ ++ C + FED S+ VLWKDI A
Sbjct: 27 PRPRLWEGQDVLARWTDGLLYLGTIKKVDSSREVCLVQFEDDSQFLVLWKDISPAALPGE 86
Query: 588 EMVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTK 767
E++C +C+ E N +V C+KC YHQ CH P + W+CRQCVFA TK
Sbjct: 87 ELLCCVCRSETVVPGNRLVSCEKCRHAYHQDCHVPRAPAPGEGEGTSWVCRQCVFAIATK 146
Query: 768 RGGALKKGPNAKALQVMKQTLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCK 947
RGGALKKGP A+A+ MK +LPY + L+WDAGH +N QQ YCYCGGPG+W LKMLQC
Sbjct: 147 RGGALKKGPYARAMLGMKLSLPYGLKGLDWDAGHLSNRQQSYCYCGGPGEWNLKMLQCQS 206
Query: 948 CKQWFHEACVPCL 986
C QWFHEAC CL
Sbjct: 207 CLQWFHEACTQCL 219
Score = 34.7 bits (78), Expect(2) = 4e-67
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +2
Query: 986 SKPMLFGDRFYTFICSVC 1039
SKP+L+GDRFY F C VC
Sbjct: 220 SKPLLYGDRFYEFECCVC 237
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,061,280
Number of extensions: 1199510
Number of successful extensions: 4431
Number of sequences better than 1.0e-05: 36
Number of HSP's gapped: 4392
Number of HSP's successfully gapped: 59
Length of query: 349
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 245
Effective length of database: 15,407,560
Effective search space: 3774852200
Effective search space used: 3774852200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
GLY 167
Query: 468 YLGTIKKINILKQSCFIIFEDSSKSWVLWKDIQTGATGSGEMVCTICQEEYSEAPNEMVI 647
YLG IK+++ KQSC + FED+SK WVLWKDIQ E C IC + S NE++I
Sbjct: 168 YLGKIKRVSSSKQSCLVTFEDNSKYWVLWKDIQHAGVPGEEPKCNICLGKTSGPLNEILI 227
Query: 648 CDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTKRGGALKKGPNAKALQVMKQT 827
C KCG GYHQ CH P S+ W CR+C+FA ++GGALKKG A+ LQ +K
Sbjct: 228 CGKCGLGYHQQCHIPIAGSADRPLLTPWFCRRCIFALAVRKGGALKKGAIARTLQAVKMV 287
Query: 828 LPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCKCKQWFHEACVPCL 986
L Y +LEWD+ H+TN QQCYCYCGGPG+WYL+MLQC +C+QWFHEAC CL
Sbjct: 288 LSYQPEELEWDSPHRTNQQQCYCYCGGPGEWYLRMLQCYRCRQWFHEACTQCL 340
Score = 37.0 bits (84), Expect(2) = 1e-69
Identities = 13/19 (68%), Positives = 17/19 (89%)
Frame = +2
Query: 986 SKPMLFGDRFYTFICSVCS 1042
++PM+FGDRFY F CSVC+
Sbjct: 341 NEPMMFGDRFYLFFCSVCN 359
>ref|NP_001179644.1| PHD finger protein 19 [Bos taurus].
Length = 580
Score = 246 bits (627), Expect(2) = 1e-69
Identities = 115/233 (49%), Positives = 146/233 (62%)
Frame = +3
Query: 288 RDSTGAGNSLVHKRSPLRRNQKTPASLTKLSLQDGHKVKKPACKFEEGQDVLARWSDGLF 467
RDS GA + L +K + + ++KL+ EGQ VL RW+DGL+
Sbjct: 11 RDSYGATSHLPNKGALAKAKNNFKDLMSKLT---------------EGQYVLCRWTDGLY 55
Query: 468 YLGTIKKINILKQSCFIIFEDSSKSWVLWKDIQTGATGSGEMVCTICQEEYSEAPNEMVI 647
YLG IK+++ KQSC + FED+SK WVLWKDIQ E C IC + S NE++I
Sbjct: 56 YLGKIKRVSSSKQSCLVTFEDNSKYWVLWKDIQHAGVPGEEPKCNICLGKTSGPLNEILI 115
Query: 648 CDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTKRGGALKKGPNAKALQVMKQT 827
C KCG GYHQ CH P S+ W CR+C+FA ++GGALKKG A+ LQ +K
Sbjct: 116 CGKCGLGYHQQCHIPIAGSADRPLLTPWFCRRCIFALAVRKGGALKKGAIARTLQAVKMV 175
Query: 828 LPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCKCKQWFHEACVPCL 986
L Y +LEWD+ H+TN QQCYCYCGGPG+WYL+MLQC +C+QWFHEAC CL
Sbjct: 176 LSYQPEELEWDSPHRTNQQQCYCYCGGPGEWYLRMLQCYRCRQWFHEACTQCL 228
Score = 37.0 bits (84), Expect(2) = 1e-69
Identities = 13/19 (68%), Positives = 17/19 (89%)
Frame = +2
Query: 986 SKPMLFGDRFYTFICSVCS 1042
++PM+FGDRFY F CSVC+
Sbjct: 229 NEPMMFGDRFYLFFCSVCN 247
>ref|NP_001092384.2| PHD finger protein 1 [Bos taurus].
Length = 567
Score = 240 bits (612), Expect(2) = 3e-67
Identities = 107/193 (55%), Positives = 130/193 (67%)
Frame = +3
Query: 408 PACKFEEGQDVLARWSDGLFYLGTIKKINILKQSCFIIFEDSSKSWVLWKDIQTGATGSG 587
P + EGQDVLARW+DGL YLGTIKK++ ++ C + FED S+ VLWKDI A
Sbjct: 27 PRPRLWEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDISPAALPGE 86
Query: 588 EMVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTK 767
E++C +C+ E N +V C+KC YHQ CH P + W+CRQCVFA TK
Sbjct: 87 ELLCCVCRSETVVPGNRLVSCEKCRHAYHQDCHVPRAPAPGEGEGASWVCRQCVFAIATK 146
Query: 768 RGGALKKGPNAKALQVMKQTLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCK 947
RGGALKKGP A+A+ MK +LPY + L+WDAGH +N QQ YCYCGGPG+W LKMLQC
Sbjct: 147 RGGALKKGPYARAMLGMKLSLPYGLKGLDWDAGHLSNRQQSYCYCGGPGEWNLKMLQCRS 206
Query: 948 CKQWFHEACVPCL 986
C QWFHEAC CL
Sbjct: 207 CLQWFHEACTQCL 219
Score = 34.7 bits (78), Expect(2) = 3e-67
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +2
Query: 986 SKPMLFGDRFYTFICSVC 1039
SKP+L+GDRFY F C VC
Sbjct: 220 SKPLLYGDRFYEFECCVC 237
>ref|XP_002693122.1| PREDICTED: myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila)-like, partial [Bos taurus].
Length = 3821
Score = 55.1 bits (131), Expect = 1e-07
Identities = 33/126 (26%), Positives = 53/126 (42%)
Frame = +3
Query: 597 CTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTKRGG 776
C +C ++ +A +++ C+KC YH C P+ + + W+C +CV K G
Sbjct: 1338 CHVCGRQH-QAAKQLLECNKCRNSYHPECLGPNYPTKPTKKKKVWICTKCV---RCKSCG 1393
Query: 777 ALKKGPNAKALQVMKQTLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCKCKQ 956
+ G A +L + A L +CY D+ KM+QC KC +
Sbjct: 1394 STTPGKGWDAQWSHDFSLCHDCAKLFAKGNFCPLCDKCY----DDDDYESKMMQCGKCDR 1449
Query: 957 WFHEAC 974
W H C
Sbjct: 1450 WVHSKC 1455
>ref|XP_585092.4| PREDICTED: myeloid/lymphoid or mixed-lineage leukemia protein [Bos
taurus].
Length = 3826
Score = 55.1 bits (131), Expect = 1e-07
Identities = 33/126 (26%), Positives = 53/126 (42%)
Frame = +3
Query: 597 CTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTKRGG 776
C +C ++ +A +++ C+KC YH C P+ + + W+C +CV K G
Sbjct: 1343 CHVCGRQH-QAAKQLLECNKCRNSYHPECLGPNYPTKPTKKKKVWICTKCV---RCKSCG 1398
Query: 777 ALKKGPNAKALQVMKQTLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCKCKQ 956
+ G A +L + A L +CY D+ KM+QC KC +
Sbjct: 1399 STTPGKGWDAQWSHDFSLCHDCAKLFAKGNFCPLCDKCY----DDDDYESKMMQCGKCDR 1454
Query: 957 WFHEAC 974
W H C
Sbjct: 1455 WVHSKC 1460
>ref|XP_002700112.1| PREDICTED: PHD finger protein 16 [Bos taurus].
Length = 785
Score = 50.8 bits (120), Expect = 2e-06
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Frame = +3
Query: 588 EMVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDE-KWLCRQCVFA--- 755
+++C +C+ SE N+MV CDKC HQ C+ ++ E WLCR CV
Sbjct: 162 DVICDVCRSPDSEEGNDMVFCDKCNICVHQACY------GILKVPEGSWLCRSCVLGIYP 215
Query: 756 ---TTTKRGGALK 785
K+GGA+K
Sbjct: 216 QCLLCPKKGGAMK 228
>ref|XP_583146.3| PREDICTED: PHD finger protein 16 [Bos taurus].
Length = 785
Score = 50.8 bits (120), Expect = 2e-06
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Frame = +3
Query: 588 EMVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDE-KWLCRQCVFA--- 755
+++C +C+ SE N+MV CDKC HQ C+ ++ E WLCR CV
Sbjct: 162 DVICDVCRSPDSEEGNDMVFCDKCNICVHQACY------GILKVPEGSWLCRSCVLGIYP 215
Query: 756 ---TTTKRGGALK 785
K+GGA+K
Sbjct: 216 QCLLCPKKGGAMK 228
>ref|NP_001015559.1| protein Jade-1 [Bos taurus].
Length = 509
Score = 49.7 bits (117), Expect = 4e-06
Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Frame = +3
Query: 591 MVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDE-KWLCRQCVFAT--- 758
+VC +CQ E NEMV CDKC HQ C+ ++ E WLCR C
Sbjct: 204 VVCDVCQSPDGEDGNEMVFCDKCNICVHQACY------GILKVPEGSWLCRTCALGVQPK 257
Query: 759 ---TTKRGGALK 785
K+GGA+K
Sbjct: 258 CLLCPKKGGAMK 269
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,283,638
Number of extensions: 1163523
Number of successful extensions: 3964
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 3942
Number of HSP's successfully gapped: 21
Length of query: 349
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 246
Effective length of database: 14,273,310
Effective search space: 3511234260
Effective search space used: 3511234260
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012603
(1047 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001925612.3| PREDICTED: PHD finger protein 19 [Sus scrofa]. 246 7e-70
Alignment gi|XP_001927916.1| PREDICTED: PHD finger protein 1 isoform 1 [S... 239 2e-67
Alignment gi|XP_003356655.1| PREDICTED: PHD finger protein 1 isoform 2 [S... 239 2e-67
Alignment gi|XP_003355340.1| PREDICTED: hypothetical protein LOC100627375... 172 4e-49
Alignment gi|XP_001928492.3| PREDICTED: metal-response element-binding tr... 148 4e-36
Alignment gi|XP_003357368.1| PREDICTED: histone-lysine N-methyltransferas... 55 6e-08
Alignment gi|XP_003135098.1| PREDICTED: protein Jade-3 [Sus scrofa]. 51 1e-06
Alignment gi|XP_003357076.1| PREDICTED: protein Jade-1 isoform 2 [Sus scr... 50 2e-06
Alignment gi|XP_003129244.1| PREDICTED: protein Jade-1 isoform 1 [Sus scr... 50 2e-06
Alignment gi|XP_003123996.2| PREDICTED: protein Jade-2 [Sus scrofa]. 50 2e-06
>ref|XP_001925612.3| PREDICTED: PHD finger protein 19 [Sus scrofa].
Length = 323
Score = 246 bits (627), Expect(2) = 7e-70
Identities = 115/233 (49%), Positives = 146/233 (62%)
Frame = +3
Query: 288 RDSTGAGNSLVHKRSPLRRNQKTPASLTKLSLQDGHKVKKPACKFEEGQDVLARWSDGLF 467
RDS GA + L +K + + ++KL+ EGQ VL RW+DGL+
Sbjct: 11 RDSYGATSHLPNKGALAKAKNNFKDLMSKLT---------------EGQYVLCRWTDGLY 55
Query: 468 YLGTIKKINILKQSCFIIFEDSSKSWVLWKDIQTGATGSGEMVCTICQEEYSEAPNEMVI 647
YLG IK+++ KQSC + FED+SK WVLWKDIQ E C IC + S NE++I
Sbjct: 56 YLGKIKRVSSSKQSCLVTFEDNSKYWVLWKDIQHAGVPGEEPKCNICLGKTSGPLNEILI 115
Query: 648 CDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTKRGGALKKGPNAKALQVMKQT 827
C KCG GYHQ CH P S+ W CR+C+FA ++GGALKKG A+ LQ +K
Sbjct: 116 CGKCGLGYHQQCHIPIAGSADRPLLTPWFCRRCIFALAVRKGGALKKGAIARTLQAVKMV 175
Query: 828 LPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCKCKQWFHEACVPCL 986
L Y +LEWD+ H+TN QQCYCYCGGPG+WYL+MLQC +C+QWFHEAC CL
Sbjct: 176 LSYQPEELEWDSPHRTNQQQCYCYCGGPGEWYLRMLQCYRCRQWFHEACTQCL 228
Score = 37.0 bits (84), Expect(2) = 7e-70
Identities = 13/19 (68%), Positives = 17/19 (89%)
Frame = +2
Query: 986 SKPMLFGDRFYTFICSVCS 1042
++PM+FGDRFY F CSVC+
Sbjct: 229 NEPMMFGDRFYLFFCSVCN 247
>ref|XP_001927916.1| PREDICTED: PHD finger protein 1 isoform 1 [Sus scrofa].
Length = 567
Score = 239 bits (611), Expect(2) = 2e-67
Identities = 107/193 (55%), Positives = 130/193 (67%)
Frame = +3
Query: 408 PACKFEEGQDVLARWSDGLFYLGTIKKINILKQSCFIIFEDSSKSWVLWKDIQTGATGSG 587
P + EGQDVLARW+DGL YLGTIKK++ ++ C + FED S+ VLWKDI A
Sbjct: 27 PRPRLWEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDISPAALPGE 86
Query: 588 EMVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTK 767
E++C +C+ E N +V C+KC YHQ CH P + W+CRQCVFA TK
Sbjct: 87 ELLCCVCRSETVVPGNRLVSCEKCRHAYHQDCHVPRAPAPGEGEGTPWVCRQCVFAIATK 146
Query: 768 RGGALKKGPNAKALQVMKQTLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCK 947
RGGALKKGP A+A+ MK +LPY + L+WDAGH +N QQ YCYCGGPG+W LKMLQC
Sbjct: 147 RGGALKKGPYARAMLGMKLSLPYGLKGLDWDAGHLSNRQQSYCYCGGPGEWNLKMLQCRS 206
Query: 948 CKQWFHEACVPCL 986
C QWFHEAC CL
Sbjct: 207 CLQWFHEACTQCL 219
Score = 34.7 bits (78), Expect(2) = 2e-67
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +2
Query: 986 SKPMLFGDRFYTFICSVC 1039
SKP+L+GDRFY F C VC
Sbjct: 220 SKPLLYGDRFYEFECCVC 237
>ref|XP_003356655.1| PREDICTED: PHD finger protein 1 isoform 2 [Sus scrofa].
Length = 457
Score = 239 bits (611), Expect(2) = 2e-67
Identities = 107/193 (55%), Positives = 130/193 (67%)
Frame = +3
Query: 408 PACKFEEGQDVLARWSDGLFYLGTIKKINILKQSCFIIFEDSSKSWVLWKDIQTGATGSG 587
P + EGQDVLARW+DGL YLGTIKK++ ++ C + FED S+ VLWKDI A
Sbjct: 27 PRPRLWEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDISPAALPGE 86
Query: 588 EMVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTK 767
E++C +C+ E N +V C+KC YHQ CH P + W+CRQCVFA TK
Sbjct: 87 ELLCCVCRSETVVPGNRLVSCEKCRHAYHQDCHVPRAPAPGEGEGTPWVCRQCVFAIATK 146
Query: 768 RGGALKKGPNAKALQVMKQTLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCK 947
RGGALKKGP A+A+ MK +LPY + L+WDAGH +N QQ YCYCGGPG+W LKMLQC
Sbjct: 147 RGGALKKGPYARAMLGMKLSLPYGLKGLDWDAGHLSNRQQSYCYCGGPGEWNLKMLQCRS 206
Query: 948 CKQWFHEACVPCL 986
C QWFHEAC CL
Sbjct: 207 CLQWFHEACTQCL 219
Score = 34.7 bits (78), Expect(2) = 2e-67
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +2
Query: 986 SKPMLFGDRFYTFICSVC 1039
SKP+L+GDRFY F C VC
Sbjct: 220 SKPLLYGDRFYEFECCVC 237
>ref|XP_003355340.1| PREDICTED: hypothetical protein LOC100627375 [Sus scrofa].
Length = 403
Score = 139 bits (351), Expect(2) = 4e-49
Identities = 67/67 (100%), Positives = 67/67 (100%)
Frame = +3
Query: 288 RDSTGAGNSLVHKRSPLRRNQKTPASLTKLSLQDGHKVKKPACKFEEGQDVLARWSDGLF 467
RDSTGAGNSLVHKRSPLRRNQKTPASLTKLSLQDGHKVKKPACKFEEGQDVLARWSDGLF
Sbjct: 26 RDSTGAGNSLVHKRSPLRRNQKTPASLTKLSLQDGHKVKKPACKFEEGQDVLARWSDGLF 85
Query: 468 YLGTIKK 488
YLGTIKK
Sbjct: 86 YLGTIKK 92
Score = 73.9 bits (180), Expect(2) = 4e-49
Identities = 34/36 (94%), Positives = 35/36 (97%)
Frame = +1
Query: 559 TFKQEPLEVGKWSVQYVKKNIQKLPMKWLYVISVAK 666
T K+EPLEVGKWSVQYVKKNIQKLPMKWLYVISVAK
Sbjct: 89 TIKKEPLEVGKWSVQYVKKNIQKLPMKWLYVISVAK 124
Score = 172 bits (437), Expect(2) = 5e-44
Identities = 77/88 (87%), Positives = 78/88 (88%)
Frame = +3
Query: 726 KWLCRQCVFATTTKRGGALKKGPNAKALQVMKQTLPYSVADLEWDAGHKTNVQQCYCYCG 905
KWL + KRGGALKKGPNAKALQVMKQTLPYSVADLEWDAGHKTNVQQCYCYCG
Sbjct: 115 KWL----YVISVAKRGGALKKGPNAKALQVMKQTLPYSVADLEWDAGHKTNVQQCYCYCG 170
Query: 906 GPGDWYLKMLQCCKCKQWFHEACVPCLQ 989
GPGDWYLKMLQCCKCKQWFHEACV CLQ
Sbjct: 171 GPGDWYLKMLQCCKCKQWFHEACVQCLQ 198
Score = 23.5 bits (49), Expect(2) = 5e-44
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 5/22 (22%)
Frame = +2
Query: 989 KPMLFGDRFYTFI-----CSVC 1039
KPMLFGDR ++ CS C
Sbjct: 199 KPMLFGDRKLKYLISDYTCSYC 220
>ref|XP_001928492.3| PREDICTED: metal-response element-binding transcription factor 2
isoform 1 [Sus scrofa].
Length = 437
Score = 148 bits (374), Expect = 4e-36
Identities = 66/66 (100%), Positives = 66/66 (100%)
Frame = +3
Query: 570 GATGSGEMVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCV 749
GATGSGEMVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCV
Sbjct: 2 GATGSGEMVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCV 61
Query: 750 FATTTK 767
FATTTK
Sbjct: 62 FATTTK 67
>ref|XP_003357368.1| PREDICTED: histone-lysine N-methyltransferase MLL, partial [Sus
scrofa].
Length = 2733
Score = 55.1 bits (131), Expect = 6e-08
Identities = 33/126 (26%), Positives = 53/126 (42%)
Frame = +3
Query: 597 CTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTKRGG 776
C +C ++ +A +++ C+KC YH C P+ + + W+C +CV K G
Sbjct: 248 CHVCGRQH-QATKQLLECNKCRNSYHPECLGPNYPTKPTKKKKVWICTKCV---RCKSCG 303
Query: 777 ALKKGPNAKALQVMKQTLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCKCKQ 956
+ G A +L + A L +CY D+ KM+QC KC +
Sbjct: 304 STTPGKGWDAQWSHDFSLCHDCAKLFAKGNFCPLCDKCY----DDDDYESKMMQCGKCDR 359
Query: 957 WFHEAC 974
W H C
Sbjct: 360 WVHSKC 365
>ref|XP_003135098.1| PREDICTED: protein Jade-3 [Sus scrofa].
Length = 841
Score = 50.8 bits (120), Expect = 1e-06
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Frame = +3
Query: 588 EMVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDE-KWLCRQCVFA--- 755
+++C +C+ SE N+MV CDKC HQ C+ ++ E WLCR CV
Sbjct: 218 DVICDVCRSPDSEEGNDMVFCDKCNICVHQACY------GILKVPEGSWLCRSCVLGIHP 271
Query: 756 ---TTTKRGGALK 785
K+GGA+K
Sbjct: 272 QCLLCPKKGGAMK 284
>ref|XP_003357076.1| PREDICTED: protein Jade-1 isoform 2 [Sus scrofa].
Length = 842
Score = 50.4 bits (119), Expect = 2e-06
Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Frame = +3
Query: 588 EMVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDE-KWLCRQCVFAT-- 758
++VC +CQ E NEMV CDKC HQ C+ ++ E WLCR C
Sbjct: 203 DVVCDVCQSPDGEDGNEMVFCDKCNICVHQACY------GILKVPEGSWLCRTCALGVQP 256
Query: 759 ----TTKRGGALK 785
K+GGA+K
Sbjct: 257 KCLLCPKKGGAMK 269
>ref|XP_003129244.1| PREDICTED: protein Jade-1 isoform 1 [Sus scrofa].
Length = 842
Score = 50.4 bits (119), Expect = 2e-06
Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Frame = +3
Query: 588 EMVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDE-KWLCRQCVFAT-- 758
++VC +CQ E NEMV CDKC HQ C+ ++ E WLCR C
Sbjct: 203 DVVCDVCQSPDGEDGNEMVFCDKCNICVHQACY------GILKVPEGSWLCRTCALGVQP 256
Query: 759 ----TTKRGGALK 785
K+GGA+K
Sbjct: 257 KCLLCPKKGGAMK 269
>ref|XP_003123996.2| PREDICTED: protein Jade-2 [Sus scrofa].
Length = 784
Score = 50.1 bits (118), Expect = 2e-06
Identities = 27/72 (37%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Frame = +3
Query: 588 EMVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT--- 758
++VC +C+ E NEMV CDKC HQ C+ + WLCR C
Sbjct: 197 DVVCDVCRSPEGEDGNEMVFCDKCNVCVHQACY-----GILKVPTGSWLCRTCALGVQPK 251
Query: 759 ---TTKRGGALK 785
KRGGALK
Sbjct: 252 CLLCPKRGGALK 263
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,186,909
Number of extensions: 745501
Number of successful extensions: 2474
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 2462
Number of HSP's successfully gapped: 16
Length of query: 349
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 249
Effective length of database: 8,854,232
Effective search space: 2204703768
Effective search space used: 2204703768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012603
(1047 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_038855.2| metal-response element-binding transcription fa... 499 e-148
Alignment gi|NP_082992.1| PHD finger protein 19 [Mus musculus]. 243 4e-69
Alignment gi|NP_033369.2| PHD finger protein 1 [Mus musculus]. 240 2e-67
Alignment gi|NP_001074518.1| histone-lysine N-methyltransferase MLL [Mus ... 55 9e-08
Alignment gi|NP_955021.1| protein Jade-3 [Mus musculus]. 51 1e-06
Alignment gi|NP_001123658.1| protein Jade-1 [Mus musculus]. 50 2e-06
Alignment gi|NP_001123657.1| protein Jade-1 [Mus musculus]. 50 2e-06
Alignment gi|NP_001123656.1| protein Jade-1 [Mus musculus]. 50 2e-06
Alignment gi|NP_758507.3| protein Jade-1 [Mus musculus]. 50 2e-06
Alignment gi|NP_955003.2| protein Jade-2 [Mus musculus]. 50 3e-06
>ref|NP_038855.2| metal-response element-binding transcription factor 2 [Mus
musculus].
Length = 593
Score = 499 bits (1286), Expect(2) = e-148
Identities = 231/235 (98%), Positives = 231/235 (98%)
Frame = +3
Query: 285 MRDSTGAGNSLVHKRSPLRRNQKTPASLTKLSLQDGHKVKKPACKFEEGQDVLARWSDGL 464
MRDSTGAGNSLVHKRSPLRRNQKT ASL KLSLQDGHK KKPACKFEEGQDVLARWSDGL
Sbjct: 1 MRDSTGAGNSLVHKRSPLRRNQKTSASLNKLSLQDGHKAKKPACKFEEGQDVLARWSDGL 60
Query: 465 FYLGTIKKINILKQSCFIIFEDSSKSWVLWKDIQTGATGSGEMVCTICQEEYSEAPNEMV 644
FYLGTIKKINILKQSCFIIFEDSSKSWVLWKDIQTGATGSGEMVCTICQEEYSEAPNEMV
Sbjct: 61 FYLGTIKKINILKQSCFIIFEDSSKSWVLWKDIQTGATGSGEMVCTICQEEYSEAPNEMV 120
Query: 645 ICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTKRGGALKKGPNAKALQVMKQ 824
ICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTKRGGALKKGPNAKALQVMKQ
Sbjct: 121 ICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTKRGGALKKGPNAKALQVMKQ 180
Query: 825 TLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCKCKQWFHEACVPCLQ 989
TLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCKCKQWFHEACV CLQ
Sbjct: 181 TLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCKCKQWFHEACVQCLQ 235
Score = 45.4 bits (106), Expect(2) = e-148
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +2
Query: 989 KPMLFGDRFYTFICSVCSS 1045
KPMLFGDRFYTFICSVCSS
Sbjct: 236 KPMLFGDRFYTFICSVCSS 254
>ref|NP_082992.1| PHD finger protein 19 [Mus musculus].
Length = 578
Score = 243 bits (619), Expect(2) = 4e-69
Identities = 105/190 (55%), Positives = 130/190 (68%)
Frame = +3
Query: 417 KFEEGQDVLARWSDGLFYLGTIKKINILKQSCFIIFEDSSKSWVLWKDIQTGATGSGEMV 596
K EGQ VL RW+DGL+YLG IK+++ KQSC + FED+SK WVLWKDIQ E
Sbjct: 37 KVTEGQFVLCRWTDGLYYLGKIKRVSSPKQSCLVTFEDNSKYWVLWKDIQHAGVPGEEPK 96
Query: 597 CTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTKRGG 776
C +C + S NE++IC KCG GYHQ CH P + W CR+C+FA ++GG
Sbjct: 97 CDVCMGKTSGPMNEILICGKCGLGYHQQCHIPIAVDANWPLLTHWFCRRCIFALAVRKGG 156
Query: 777 ALKKGPNAKALQVMKQTLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCKCKQ 956
ALKKG AK LQ +K L Y +L+WD+ H+TN QQCYCYCGGPG+WYL+MLQC +C+Q
Sbjct: 157 ALKKGAIAKTLQAVKMVLSYQPEELDWDSPHRTNQQQCYCYCGGPGEWYLRMLQCYRCRQ 216
Query: 957 WFHEACVPCL 986
WFHEAC CL
Sbjct: 217 WFHEACTQCL 226
Score = 37.7 bits (86), Expect(2) = 4e-69
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = +2
Query: 986 SKPMLFGDRFYTFICSVCS 1042
S+PM+FGDRFY F CSVC+
Sbjct: 227 SEPMVFGDRFYLFFCSVCN 245
>ref|NP_033369.2| PHD finger protein 1 [Mus musculus].
Length = 559
Score = 240 bits (612), Expect(2) = 2e-67
Identities = 107/193 (55%), Positives = 130/193 (67%)
Frame = +3
Query: 408 PACKFEEGQDVLARWSDGLFYLGTIKKINILKQSCFIIFEDSSKSWVLWKDIQTGATGSG 587
P + EGQDVLARW+DGL YLGTIKK++ ++ C + FED S+ VLWKDI A
Sbjct: 27 PRPRLWEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDISPAALPGE 86
Query: 588 EMVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTK 767
E++C +C+ E N +V C+KC YHQ CH P + W+CRQCVFA TK
Sbjct: 87 ELLCCVCRSETVVPGNRLVSCEKCRHAYHQDCHVPRAPAPGEGEGASWVCRQCVFAIATK 146
Query: 768 RGGALKKGPNAKALQVMKQTLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCK 947
RGGALKKGP A+A+ MK +LPY + L+WDAGH +N QQ YCYCGGPG+W LKMLQC
Sbjct: 147 RGGALKKGPYARAMLGMKLSLPYGLKGLDWDAGHLSNRQQSYCYCGGPGEWNLKMLQCRS 206
Query: 948 CKQWFHEACVPCL 986
C QWFHEAC CL
Sbjct: 207 CLQWFHEACTQCL 219
Score = 34.7 bits (78), Expect(2) = 2e-67
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +2
Query: 986 SKPMLFGDRFYTFICSVC 1039
SKP+L+GDRFY F C VC
Sbjct: 220 SKPLLYGDRFYEFECCVC 237
>ref|NP_001074518.1| histone-lysine N-methyltransferase MLL [Mus musculus].
Length = 3963
Score = 55.1 bits (131), Expect = 9e-08
Identities = 33/126 (26%), Positives = 53/126 (42%)
Frame = +3
Query: 597 CTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTKRGG 776
C +C ++ +A +++ C+KC YH C P+ + + W+C +CV K G
Sbjct: 1481 CHVCGRQH-QATKQLLECNKCRNSYHPECLGPNYPTKPTKKKKVWICTKCV---RCKSCG 1536
Query: 777 ALKKGPNAKALQVMKQTLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCKCKQ 956
+ G A +L + A L +CY D+ KM+QC KC +
Sbjct: 1537 STTPGKGWDAQWSHDFSLCHDCAKLFAKGNFCPLCDKCY----DDDDYESKMMQCGKCDR 1592
Query: 957 WFHEAC 974
W H C
Sbjct: 1593 WVHSKC 1598
>ref|NP_955021.1| protein Jade-3 [Mus musculus].
Length = 823
Score = 51.2 bits (121), Expect = 1e-06
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Frame = +3
Query: 588 EMVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDE-KWLCRQCVF---- 752
+++C +C+ SE N+MV CDKC HQ C+ ++ E WLCR CV
Sbjct: 200 DVICDVCRSPDSEEGNDMVFCDKCNVCVHQACY------GILKIPEGSWLCRSCVLGIYP 253
Query: 753 --ATTTKRGGALK 785
K+GGA+K
Sbjct: 254 QCVLCPKKGGAMK 266
>ref|NP_001123658.1| protein Jade-1 [Mus musculus].
Length = 834
Score = 50.4 bits (119), Expect = 2e-06
Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Frame = +3
Query: 588 EMVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDE-KWLCRQCVFAT-- 758
++VC +CQ E NEMV CDKC HQ C+ ++ E WLCR C
Sbjct: 204 DVVCDVCQSPDGEDGNEMVFCDKCNICVHQACY------GILKVPEGSWLCRTCALGVQP 257
Query: 759 ----TTKRGGALK 785
K+GGA+K
Sbjct: 258 KCLLCPKKGGAMK 270
>ref|NP_001123657.1| protein Jade-1 [Mus musculus].
Length = 834
Score = 50.4 bits (119), Expect = 2e-06
Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Frame = +3
Query: 588 EMVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDE-KWLCRQCVFAT-- 758
++VC +CQ E NEMV CDKC HQ C+ ++ E WLCR C
Sbjct: 204 DVVCDVCQSPDGEDGNEMVFCDKCNICVHQACY------GILKVPEGSWLCRTCALGVQP 257
Query: 759 ----TTKRGGALK 785
K+GGA+K
Sbjct: 258 KCLLCPKKGGAMK 270
>ref|NP_001123656.1| protein Jade-1 [Mus musculus].
Length = 834
Score = 50.4 bits (119), Expect = 2e-06
Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Frame = +3
Query: 588 EMVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDE-KWLCRQCVFAT-- 758
++VC +CQ E NEMV CDKC HQ C+ ++ E WLCR C
Sbjct: 204 DVVCDVCQSPDGEDGNEMVFCDKCNICVHQACY------GILKVPEGSWLCRTCALGVQP 257
Query: 759 ----TTKRGGALK 785
K+GGA+K
Sbjct: 258 KCLLCPKKGGAMK 270
>ref|NP_758507.3| protein Jade-1 [Mus musculus].
Length = 834
Score = 50.4 bits (119), Expect = 2e-06
Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Frame = +3
Query: 588 EMVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDE-KWLCRQCVFAT-- 758
++VC +CQ E NEMV CDKC HQ C+ ++ E WLCR C
Sbjct: 204 DVVCDVCQSPDGEDGNEMVFCDKCNICVHQACY------GILKVPEGSWLCRTCALGVQP 257
Query: 759 ----TTKRGGALK 785
K+GGA+K
Sbjct: 258 KCLLCPKKGGAMK 270
>ref|NP_955003.2| protein Jade-2 [Mus musculus].
Length = 829
Score = 50.1 bits (118), Expect = 3e-06
Identities = 27/72 (37%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Frame = +3
Query: 588 EMVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT--- 758
++VC +C+ E NEMV CDKC HQ C+ + WLCR C
Sbjct: 199 DVVCDVCRSPEGEDGNEMVFCDKCNVCVHQACY-----GILKVPTGSWLCRTCALGVQPK 253
Query: 759 ---TTKRGGALK 785
KRGGALK
Sbjct: 254 CLLCPKRGGALK 265
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,006,641
Number of extensions: 1007551
Number of successful extensions: 3394
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 3378
Number of HSP's successfully gapped: 17
Length of query: 349
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 247
Effective length of database: 12,553,887
Effective search space: 3100810089
Effective search space used: 3100810089
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012603
(1047 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031384.1| metal-response element-binding transcription fa... 503 e-149
Alignment gi|NP_001157864.1| metal-response element-binding transcription... 503 e-149
Alignment gi|NP_001157865.1| metal-response element-binding transcription... 300 2e-88
Alignment gi|NP_001157863.1| metal-response element-binding transcription... 300 2e-88
Alignment gi|NP_056466.1| PHD finger protein 19 isoform a [Homo sapiens]. 246 8e-70
Alignment gi|NP_077084.1| PHD finger protein 1 isoform b [Homo sapiens]. 240 3e-67
Alignment gi|NP_002627.1| PHD finger protein 1 isoform a [Homo sapiens]. 240 3e-67
Alignment gi|NP_001009936.1| PHD finger protein 19 isoform b [Homo sapien... 129 4e-30
Alignment gi|NP_001184033.1| histone-lysine N-methyltransferase MLL isofo... 55 1e-07
Alignment gi|NP_005924.2| histone-lysine N-methyltransferase MLL isoform ... 55 1e-07
>ref|NP_031384.1| metal-response element-binding transcription factor 2 isoform a
[Homo sapiens].
Length = 593
Score = 503 bits (1295), Expect(2) = e-149
Identities = 232/235 (98%), Positives = 232/235 (98%)
Frame = +3
Query: 285 MRDSTGAGNSLVHKRSPLRRNQKTPASLTKLSLQDGHKVKKPACKFEEGQDVLARWSDGL 464
MRDSTGAGNSLVHKRSPLRRNQKTP SLTKLSLQDGHK KKPACKFEEGQDVLARWSDGL
Sbjct: 1 MRDSTGAGNSLVHKRSPLRRNQKTPTSLTKLSLQDGHKAKKPACKFEEGQDVLARWSDGL 60
Query: 465 FYLGTIKKINILKQSCFIIFEDSSKSWVLWKDIQTGATGSGEMVCTICQEEYSEAPNEMV 644
FYLGTIKKINILKQSCFIIFEDSSKSWVLWKDIQTGATGSGEMVCTICQEEYSEAPNEMV
Sbjct: 61 FYLGTIKKINILKQSCFIIFEDSSKSWVLWKDIQTGATGSGEMVCTICQEEYSEAPNEMV 120
Query: 645 ICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTKRGGALKKGPNAKALQVMKQ 824
ICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTKRGGALKKGPNAKALQVMKQ
Sbjct: 121 ICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTKRGGALKKGPNAKALQVMKQ 180
Query: 825 TLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCKCKQWFHEACVPCLQ 989
TLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCKCKQWFHEACV CLQ
Sbjct: 181 TLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCKCKQWFHEACVQCLQ 235
Score = 45.4 bits (106), Expect(2) = e-149
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +2
Query: 989 KPMLFGDRFYTFICSVCSS 1045
KPMLFGDRFYTFICSVCSS
Sbjct: 236 KPMLFGDRFYTFICSVCSS 254
>ref|NP_001157864.1| metal-response element-binding transcription factor 2 isoform b
[Homo sapiens].
Length = 536
Score = 503 bits (1295), Expect(2) = e-149
Identities = 232/235 (98%), Positives = 232/235 (98%)
Frame = +3
Query: 285 MRDSTGAGNSLVHKRSPLRRNQKTPASLTKLSLQDGHKVKKPACKFEEGQDVLARWSDGL 464
MRDSTGAGNSLVHKRSPLRRNQKTP SLTKLSLQDGHK KKPACKFEEGQDVLARWSDGL
Sbjct: 1 MRDSTGAGNSLVHKRSPLRRNQKTPTSLTKLSLQDGHKAKKPACKFEEGQDVLARWSDGL 60
Query: 465 FYLGTIKKINILKQSCFIIFEDSSKSWVLWKDIQTGATGSGEMVCTICQEEYSEAPNEMV 644
FYLGTIKKINILKQSCFIIFEDSSKSWVLWKDIQTGATGSGEMVCTICQEEYSEAPNEMV
Sbjct: 61 FYLGTIKKINILKQSCFIIFEDSSKSWVLWKDIQTGATGSGEMVCTICQEEYSEAPNEMV 120
Query: 645 ICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTKRGGALKKGPNAKALQVMKQ 824
ICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTKRGGALKKGPNAKALQVMKQ
Sbjct: 121 ICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTKRGGALKKGPNAKALQVMKQ 180
Query: 825 TLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCKCKQWFHEACVPCLQ 989
TLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCKCKQWFHEACV CLQ
Sbjct: 181 TLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCKCKQWFHEACVQCLQ 235
Score = 45.4 bits (106), Expect(2) = e-149
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +2
Query: 989 KPMLFGDRFYTFICSVCSS 1045
KPMLFGDRFYTFICSVCSS
Sbjct: 236 KPMLFGDRFYTFICSVCSS 254
>ref|NP_001157865.1| metal-response element-binding transcription factor 2 isoform c
[Homo sapiens].
Length = 491
Score = 300 bits (767), Expect(2) = 2e-88
Identities = 132/133 (99%), Positives = 132/133 (99%)
Frame = +3
Query: 591 MVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTKR 770
MVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTKR
Sbjct: 1 MVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTKR 60
Query: 771 GGALKKGPNAKALQVMKQTLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCKC 950
GGALKKGPNAKALQVMKQTLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCKC
Sbjct: 61 GGALKKGPNAKALQVMKQTLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCKC 120
Query: 951 KQWFHEACVPCLQ 989
KQWFHEACV CLQ
Sbjct: 121 KQWFHEACVQCLQ 133
Score = 45.4 bits (106), Expect(2) = 2e-88
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +2
Query: 989 KPMLFGDRFYTFICSVCSS 1045
KPMLFGDRFYTFICSVCSS
Sbjct: 134 KPMLFGDRFYTFICSVCSS 152
>ref|NP_001157863.1| metal-response element-binding transcription factor 2 isoform c
[Homo sapiens].
Length = 491
Score = 300 bits (767), Expect(2) = 2e-88
Identities = 132/133 (99%), Positives = 132/133 (99%)
Frame = +3
Query: 591 MVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTKR 770
MVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTKR
Sbjct: 1 MVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTKR 60
Query: 771 GGALKKGPNAKALQVMKQTLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCKC 950
GGALKKGPNAKALQVMKQTLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCKC
Sbjct: 61 GGALKKGPNAKALQVMKQTLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCKC 120
Query: 951 KQWFHEACVPCLQ 989
KQWFHEACV CLQ
Sbjct: 121 KQWFHEACVQCLQ 133
Score = 45.4 bits (106), Expect(2) = 2e-88
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +2
Query: 989 KPMLFGDRFYTFICSVCSS 1045
KPMLFGDRFYTFICSVCSS
Sbjct: 134 KPMLFGDRFYTFICSVCSS 152
>ref|NP_056466.1| PHD finger protein 19 isoform a [Homo sapiens].
Length = 580
Score = 246 bits (628), Expect(2) = 8e-70
Identities = 117/233 (50%), Positives = 146/233 (62%)
Frame = +3
Query: 288 RDSTGAGNSLVHKRSPLRRNQKTPASLTKLSLQDGHKVKKPACKFEEGQDVLARWSDGLF 467
RDS GA + L +K +L K+ + K K EGQ VL RW+DGL+
Sbjct: 11 RDSYGATSHLPNK-----------GALAKVK----NNFKDLMSKLTEGQYVLCRWTDGLY 55
Query: 468 YLGTIKKINILKQSCFIIFEDSSKSWVLWKDIQTGATGSGEMVCTICQEEYSEAPNEMVI 647
YLG IK+++ KQSC + FED+SK WVLWKDIQ E C IC + S NE++I
Sbjct: 56 YLGKIKRVSSSKQSCLVTFEDNSKYWVLWKDIQHAGVPGEEPKCNICLGKTSGPLNEILI 115
Query: 648 CDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTKRGGALKKGPNAKALQVMKQT 827
C KCG GYHQ CH P S+ W CR+C+FA ++GGALKKG A+ LQ +K
Sbjct: 116 CGKCGLGYHQQCHIPIAGSADQPLLTPWFCRRCIFALAVRKGGALKKGAIARTLQAVKMV 175
Query: 828 LPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCKCKQWFHEACVPCL 986
L Y +LEWD+ H+TN QQCYCYCGGPG+WYL+MLQC +C+QWFHEAC CL
Sbjct: 176 LSYQPEELEWDSPHRTNQQQCYCYCGGPGEWYLRMLQCYRCRQWFHEACTQCL 228
Score = 37.0 bits (84), Expect(2) = 8e-70
Identities = 13/19 (68%), Positives = 17/19 (89%)
Frame = +2
Query: 986 SKPMLFGDRFYTFICSVCS 1042
++PM+FGDRFY F CSVC+
Sbjct: 229 NEPMMFGDRFYLFFCSVCN 247
>ref|NP_077084.1| PHD finger protein 1 isoform b [Homo sapiens].
Length = 567
Score = 240 bits (612), Expect(2) = 3e-67
Identities = 107/193 (55%), Positives = 130/193 (67%)
Frame = +3
Query: 408 PACKFEEGQDVLARWSDGLFYLGTIKKINILKQSCFIIFEDSSKSWVLWKDIQTGATGSG 587
P + EGQDVLARW+DGL YLGTIKK++ ++ C + FED S+ VLWKDI A
Sbjct: 27 PRPRLWEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDISPAALPGE 86
Query: 588 EMVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTK 767
E++C +C+ E N +V C+KC YHQ CH P + W+CRQCVFA TK
Sbjct: 87 ELLCCVCRSETVVPGNRLVSCEKCRHAYHQDCHVPRAPAPGEGEGTSWVCRQCVFAIATK 146
Query: 768 RGGALKKGPNAKALQVMKQTLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCK 947
RGGALKKGP A+A+ MK +LPY + L+WDAGH +N QQ YCYCGGPG+W LKMLQC
Sbjct: 147 RGGALKKGPYARAMLGMKLSLPYGLKGLDWDAGHLSNRQQSYCYCGGPGEWNLKMLQCRS 206
Query: 948 CKQWFHEACVPCL 986
C QWFHEAC CL
Sbjct: 207 CLQWFHEACTQCL 219
Score = 34.7 bits (78), Expect(2) = 3e-67
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +2
Query: 986 SKPMLFGDRFYTFICSVC 1039
SKP+L+GDRFY F C VC
Sbjct: 220 SKPLLYGDRFYEFECCVC 237
>ref|NP_002627.1| PHD finger protein 1 isoform a [Homo sapiens].
Length = 457
Score = 240 bits (612), Expect(2) = 3e-67
Identities = 107/193 (55%), Positives = 130/193 (67%)
Frame = +3
Query: 408 PACKFEEGQDVLARWSDGLFYLGTIKKINILKQSCFIIFEDSSKSWVLWKDIQTGATGSG 587
P + EGQDVLARW+DGL YLGTIKK++ ++ C + FED S+ VLWKDI A
Sbjct: 27 PRPRLWEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDISPAALPGE 86
Query: 588 EMVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTK 767
E++C +C+ E N +V C+KC YHQ CH P + W+CRQCVFA TK
Sbjct: 87 ELLCCVCRSETVVPGNRLVSCEKCRHAYHQDCHVPRAPAPGEGEGTSWVCRQCVFAIATK 146
Query: 768 RGGALKKGPNAKALQVMKQTLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCK 947
RGGALKKGP A+A+ MK +LPY + L+WDAGH +N QQ YCYCGGPG+W LKMLQC
Sbjct: 147 RGGALKKGPYARAMLGMKLSLPYGLKGLDWDAGHLSNRQQSYCYCGGPGEWNLKMLQCRS 206
Query: 948 CKQWFHEACVPCL 986
C QWFHEAC CL
Sbjct: 207 CLQWFHEACTQCL 219
Score = 34.7 bits (78), Expect(2) = 3e-67
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +2
Query: 986 SKPMLFGDRFYTFICSVC 1039
SKP+L+GDRFY F C VC
Sbjct: 220 SKPLLYGDRFYEFECCVC 237
>ref|NP_001009936.1| PHD finger protein 19 isoform b [Homo sapiens].
Length = 207
Score = 129 bits (324), Expect = 4e-30
Identities = 69/160 (43%), Positives = 88/160 (55%)
Frame = +3
Query: 288 RDSTGAGNSLVHKRSPLRRNQKTPASLTKLSLQDGHKVKKPACKFEEGQDVLARWSDGLF 467
RDS GA + L +K +L K+ + K K EGQ VL RW+DGL+
Sbjct: 11 RDSYGATSHLPNK-----------GALAKVK----NNFKDLMSKLTEGQYVLCRWTDGLY 55
Query: 468 YLGTIKKINILKQSCFIIFEDSSKSWVLWKDIQTGATGSGEMVCTICQEEYSEAPNEMVI 647
YLG IK+++ KQSC + FED+SK WVLWKDIQ E C IC + S NE++I
Sbjct: 56 YLGKIKRVSSSKQSCLVTFEDNSKYWVLWKDIQHAGVPGEEPKCNICLGKTSGPLNEILI 115
Query: 648 CDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTK 767
C KCG GYHQ CH P S+ W CR+C+FA +
Sbjct: 116 CGKCGLGYHQQCHIPIAGSADQPLLTPWFCRRCIFALAVR 155
>ref|NP_001184033.1| histone-lysine N-methyltransferase MLL isoform 1 precursor [Homo
sapiens].
Length = 3972
Score = 55.1 bits (131), Expect = 1e-07
Identities = 33/126 (26%), Positives = 53/126 (42%)
Frame = +3
Query: 597 CTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTKRGG 776
C +C ++ +A +++ C+KC YH C P+ + + W+C +CV K G
Sbjct: 1482 CHVCGRQH-QATKQLLECNKCRNSYHPECLGPNYPTKPTKKKKVWICTKCV---RCKSCG 1537
Query: 777 ALKKGPNAKALQVMKQTLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCKCKQ 956
+ G A +L + A L +CY D+ KM+QC KC +
Sbjct: 1538 STTPGKGWDAQWSHDFSLCHDCAKLFAKGNFCPLCDKCY----DDDDYESKMMQCGKCDR 1593
Query: 957 WFHEAC 974
W H C
Sbjct: 1594 WVHSKC 1599
>ref|NP_005924.2| histone-lysine N-methyltransferase MLL isoform 2 precursor [Homo
sapiens].
Length = 3969
Score = 55.1 bits (131), Expect = 1e-07
Identities = 33/126 (26%), Positives = 53/126 (42%)
Frame = +3
Query: 597 CTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTKRGG 776
C +C ++ +A +++ C+KC YH C P+ + + W+C +CV K G
Sbjct: 1482 CHVCGRQH-QATKQLLECNKCRNSYHPECLGPNYPTKPTKKKKVWICTKCV---RCKSCG 1537
Query: 777 ALKKGPNAKALQVMKQTLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCKCKQ 956
+ G A +L + A L +CY D+ KM+QC KC +
Sbjct: 1538 STTPGKGWDAQWSHDFSLCHDCAKLFAKGNFCPLCDKCY----DDDDYESKMMQCGKCDR 1593
Query: 957 WFHEAC 974
W H C
Sbjct: 1594 WVHSKC 1599
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,395,010
Number of extensions: 1186756
Number of successful extensions: 4062
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 4029
Number of HSP's successfully gapped: 28
Length of query: 349
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 246
Effective length of database: 14,901,872
Effective search space: 3665860512
Effective search space used: 3665860512
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012603
(1047 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 573 e-161
>Sscrofa_Chr04
|| Length = 143465943
Score = 573 bits (289), Expect = e-161
Identities = 289/289 (100%)
Strand = Plus / Minus
Query: 1 attcggccgggagtcgctccgcgctcccagaatgcaccggcagtccgcgggaaaccaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135752392 attcggccgggagtcgctccgcgctcccagaatgcaccggcagtccgcgggaaaccaaaa 135752333
Query: 61 tggcgaagggttgtagcgaagtgggctgtgtttgaggccggtttagaacgctcattctgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135752332 tggcgaagggttgtagcgaagtgggctgtgtttgaggccggtttagaacgctcattctgc 135752273
Query: 121 ccccaaccctcgtccccaggacctcggtttgtgcgtgtgtttgtgcggggtgcccggtgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135752272 ccccaaccctcgtccccaggacctcggtttgtgcgtgtgtttgtgcggggtgcccggtgg 135752213
Query: 181 ggcgggtgcccagtaagtgctcggactcgcaggggaagcccccacggggtcgtgattggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135752212 ggcgggtgcccagtaagtgctcggactcgcaggggaagcccccacggggtcgtgattggt 135752153
Query: 241 tcttttttcctgtatgaagcggttggcaccactgaagtgaccgaatgag 289
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135752152 tcttttttcctgtatgaagcggttggcaccactgaagtgaccgaatgag 135752104
Score = 398 bits (201), Expect = e-108
Identities = 201/201 (100%)
Strand = Plus / Minus
Query: 288 agagactctacaggggcaggtaattcactggtccacaagcggtctcctttacgccgaaac 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135707223 agagactctacaggggcaggtaattcactggtccacaagcggtctcctttacgccgaaac 135707164
Query: 348 caaaagaccccagcatccttgaccaagctgtctttacaggatggacataaagtcaaaaag 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135707163 caaaagaccccagcatccttgaccaagctgtctttacaggatggacataaagtcaaaaag 135707104
Query: 408 ccagcatgtaaatttgaagagggtcaggatgtcctagctagatggtcagatggcttgttt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135707103 ccagcatgtaaatttgaagagggtcaggatgtcctagctagatggtcagatggcttgttt 135707044
Query: 468 tatcttggaactatcaaaaag 488
|||||||||||||||||||||
Sbjct: 135707043 tatcttggaactatcaaaaag 135707023
Score = 299 bits (151), Expect = 2e-78
Identities = 151/151 (100%)
Strand = Plus / Minus
Query: 766 agaggggtggtgcacttaagaaaggaccaaatgccaaagcattgcaagtcatgaagcaga 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135701425 agaggggtggtgcacttaagaaaggaccaaatgccaaagcattgcaagtcatgaagcaga 135701366
Query: 826 cattaccctatagtgtggcagatcttgaatgggatgcaggtcataaaaccaatgtccagc 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135701365 cattaccctatagtgtggcagatcttgaatgggatgcaggtcataaaaccaatgtccagc 135701306
Query: 886 aatgttactgctattgtggaggccctggaga 916
|||||||||||||||||||||||||||||||
Sbjct: 135701305 aatgttactgctattgtggaggccctggaga 135701275
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Minus
Query: 664 aaggatatcatcagttgtgtcacacacctcatattgattccagtgtgattgattcagatg 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135701915 aaggatatcatcagttgtgtcacacacctcatattgattccagtgtgattgattcagatg 135701856
Query: 724 aaaaatggctctgtcgacagtgtgtttttgcaacaacaacaaag 767
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135701855 aaaaatggctctgtcgacagtgtgtttttgcaacaacaacaaag 135701812
Score = 196 bits (99), Expect = 2e-47
Identities = 99/99 (100%)
Strand = Plus / Minus
Query: 569 aggagccactggaagtggggaaatggtctgtacaatatgtcaagaagaatattcagaagc 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135702244 aggagccactggaagtggggaaatggtctgtacaatatgtcaagaagaatattcagaagc 135702185
Query: 629 tcccaatgaaatggttatatgtgataagtgtggccaagg 667
|||||||||||||||||||||||||||||||||||||||
Sbjct: 135702184 tcccaatgaaatggttatatgtgataagtgtggccaagg 135702146
Score = 170 bits (86), Expect = 1e-39
Identities = 96/98 (97%), Gaps = 1/98 (1%)
Strand = Plus / Minus
Query: 917 ctggtatttaaagatgctgcaatgctgcaaatgtaagcagtggtttcatgaagcttgtgt 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135699145 ctggtatttaaagatgctgcaatgctgcaaatgtaagcagtggtttcatgaagcttgtgt 135699086
Query: 977 gccatgtcttc-aaagccaatgctatttggagacaggt 1013
|| |||||||| ||||||||||||||||||||||||||
Sbjct: 135699085 gcaatgtcttcaaaagccaatgctatttggagacaggt 135699048
Score = 168 bits (85), Expect = 4e-39
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 487 agataaacatattgaaacagagctgcttcatcatatttgaagacagttctaaatcctggg 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135706888 agataaacatattgaaacagagctgcttcatcatatttgaagacagttctaaatcctggg 135706829
Query: 547 ttctctggaaggacattcaaacagg 571
|||||||||||||||||||||||||
Sbjct: 135706828 ttctctggaaggacattcaaacagg 135706804
Score = 75.8 bits (38), Expect = 4e-11
Identities = 38/38 (100%)
Strand = Plus / Minus
Query: 1010 aggttttatacatttatttgctctgtctgcagttcggg 1047
||||||||||||||||||||||||||||||||||||||
Sbjct: 135659564 aggttttatacatttatttgctctgtctgcagttcggg 135659527
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,279,124
Number of extensions: 213
Number of successful extensions: 213
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 212
Number of HSP's successfully gapped: 8
Length of query: 1047
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1026
Effective length of database: 2,808,413,156
Effective search space: 2881431898056
Effective search space used: 2881431898056
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)