Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012605
(1115 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_777255.1| eukaryotic translation initiation factor 6 [Bos... 470 e-132
>ref|NP_777255.1| eukaryotic translation initiation factor 6 [Bos taurus].
Length = 245
Score = 470 bits (1209), Expect = e-132
Identities = 236/245 (96%), Positives = 238/245 (97%)
Frame = +1
Query: 82 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELADTIPVVHASIAGCRIIG 261
MAVRASFENNCEIGCFAKLTN+YCLVAIGGSENFYSVFEGELA TIPVVHASIAGCRIIG
Sbjct: 1 MAVRASFENNCEIGCFAKLTNSYCLVAIGGSENFYSVFEGELAGTIPVVHASIAGCRIIG 60
Query: 262 RMCVGNRHGLLVPNNTTDQELQHIRNCLPDSVQIRRVEERLSALGNVTTCNDYVALVHPD 441
RMCVGNRHGLLVPNNTTDQELQHIRNCLPDSVQIRRVEERLSALGNVTTCNDYVALVHPD
Sbjct: 61 RMCVGNRHGLLVPNNTTDQELQHIRNCLPDSVQIRRVEERLSALGNVTTCNDYVALVHPD 120
Query: 442 LDRETEEILADVLRVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP 621
LDRETEEILADVL+VEVFRQ VADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP
Sbjct: 121 LDRETEEILADVLKVEVFRQKVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP 180
Query: 622 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSL 801
LVAGTVNRGSEVIAAGM VNDWCAFCGLD TSTELSVVESV K NEAQPSTIATSMRDSL
Sbjct: 181 LVAGTVNRGSEVIAAGMAVNDWCAFCGLDATSTELSVVESVSKPNEAQPSTIATSMRDSL 240
Query: 802 IDSLT 816
DSLT
Sbjct: 241 TDSLT 245
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 47,403,605
Number of extensions: 1470920
Number of successful extensions: 4958
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4928
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 267
Effective length of database: 14,240,222
Effective search space: 3802139274
Effective search space used: 3802139274
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012605
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012605
(1115 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534401.1| PREDICTED: similar to Eukaryotic translation in... 484 e-137
Alignment gi|XP_864465.1| PREDICTED: similar to Eukaryotic translation in... 456 e-128
Alignment gi|XP_864447.1| PREDICTED: similar to integrin beta 4 binding p... 141 1e-33
>ref|XP_534401.1| PREDICTED: similar to Eukaryotic translation initiation factor 6
(eIF-6) (B4 integrin interactor) (CAB) (p27(BBP))
(B(2)GCN homolog) isoform 1 [Canis familiaris].
Length = 245
Score = 484 bits (1245), Expect = e-137
Identities = 243/245 (99%), Positives = 244/245 (99%)
Frame = +1
Query: 82 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELADTIPVVHASIAGCRIIG 261
MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELADTIPVVHASIAGCRIIG
Sbjct: 1 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELADTIPVVHASIAGCRIIG 60
Query: 262 RMCVGNRHGLLVPNNTTDQELQHIRNCLPDSVQIRRVEERLSALGNVTTCNDYVALVHPD 441
RMCVGNRHGLLVPNNTTDQELQHIRNCLPDSVQIRRVEERLSALGNVTTCNDYVALVHPD
Sbjct: 61 RMCVGNRHGLLVPNNTTDQELQHIRNCLPDSVQIRRVEERLSALGNVTTCNDYVALVHPD 120
Query: 442 LDRETEEILADVLRVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP 621
LDRETEEILADVL+VEVFRQTVADQVLVGSY VFSNQGGLVHPKTSIEDQDELSSLLQVP
Sbjct: 121 LDRETEEILADVLKVEVFRQTVADQVLVGSYSVFSNQGGLVHPKTSIEDQDELSSLLQVP 180
Query: 622 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSL 801
LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSL
Sbjct: 181 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSL 240
Query: 802 IDSLT 816
IDSLT
Sbjct: 241 IDSLT 245
>ref|XP_864465.1| PREDICTED: similar to Eukaryotic translation initiation factor 6
(eIF-6) (B4 integrin interactor) (CAB) (p27(BBP))
(B(2)GCN homolog) isoform 3 [Canis familiaris].
Length = 235
Score = 456 bits (1172), Expect = e-128
Identities = 233/245 (95%), Positives = 234/245 (95%)
Frame = +1
Query: 82 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELADTIPVVHASIAGCRIIG 261
MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELADTIPVVHASIAGCRIIG
Sbjct: 1 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELADTIPVVHASIAGCRIIG 60
Query: 262 RMCVGNRHGLLVPNNTTDQELQHIRNCLPDSVQIRRVEERLSALGNVTTCNDYVALVHPD 441
RMCVGNRHGLLVPNNTTDQELQHIRNCLPDSVQIRRVEERLSALGNVTTCNDY
Sbjct: 61 RMCVGNRHGLLVPNNTTDQELQHIRNCLPDSVQIRRVEERLSALGNVTTCNDY------- 113
Query: 442 LDRETEEILADVLRVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP 621
ETEEILADVL+VEVFRQTVADQVLVGSY VFSNQGGLVHPKTSIEDQDELSSLLQVP
Sbjct: 114 ---ETEEILADVLKVEVFRQTVADQVLVGSYSVFSNQGGLVHPKTSIEDQDELSSLLQVP 170
Query: 622 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSL 801
LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSL
Sbjct: 171 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSL 230
Query: 802 IDSLT 816
IDSLT
Sbjct: 231 IDSLT 235
>ref|XP_864447.1| PREDICTED: similar to integrin beta 4 binding protein isoform b
isoform 2 [Canis familiaris].
Length = 71
Score = 141 bits (355), Expect = 1e-33
Identities = 67/67 (100%), Positives = 67/67 (100%)
Frame = +1
Query: 82 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELADTIPVVHASIAGCRIIG 261
MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELADTIPVVHASIAGCRIIG
Sbjct: 1 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELADTIPVVHASIAGCRIIG 60
Query: 262 RMCVGNR 282
RMCVGNR
Sbjct: 61 RMCVGNR 67
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 49,274,910
Number of extensions: 1482887
Number of successful extensions: 5189
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5042
Number of HSP's successfully gapped: 3
Length of query: 371
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 267
Effective length of database: 15,407,560
Effective search space: 4113818520
Effective search space used: 4113818520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012605
(1115 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230506.1| eukaryotic translation initiation factor [Su... 489 e-138
>ref|NP_001230506.1| eukaryotic translation initiation factor [Sus scrofa].
Length = 245
Score = 489 bits (1258), Expect = e-138
Identities = 245/245 (100%), Positives = 245/245 (100%)
Frame = +1
Query: 82 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELADTIPVVHASIAGCRIIG 261
MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELADTIPVVHASIAGCRIIG
Sbjct: 1 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELADTIPVVHASIAGCRIIG 60
Query: 262 RMCVGNRHGLLVPNNTTDQELQHIRNCLPDSVQIRRVEERLSALGNVTTCNDYVALVHPD 441
RMCVGNRHGLLVPNNTTDQELQHIRNCLPDSVQIRRVEERLSALGNVTTCNDYVALVHPD
Sbjct: 61 RMCVGNRHGLLVPNNTTDQELQHIRNCLPDSVQIRRVEERLSALGNVTTCNDYVALVHPD 120
Query: 442 LDRETEEILADVLRVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP 621
LDRETEEILADVLRVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP
Sbjct: 121 LDRETEEILADVLRVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP 180
Query: 622 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSL 801
LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSL
Sbjct: 181 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSL 240
Query: 802 IDSLT 816
IDSLT
Sbjct: 241 IDSLT 245
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,811,836
Number of extensions: 980209
Number of successful extensions: 3004
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2999
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 271
Effective length of database: 8,854,232
Effective search space: 2399496872
Effective search space used: 2399496872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012605
(1115 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034709.1| eukaryotic translation initiation factor 6 [Mus... 477 e-135
>ref|NP_034709.1| eukaryotic translation initiation factor 6 [Mus musculus].
Length = 245
Score = 477 bits (1227), Expect = e-135
Identities = 238/245 (97%), Positives = 242/245 (98%)
Frame = +1
Query: 82 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELADTIPVVHASIAGCRIIG 261
MAVRASFENNCE+GCFAKLTN YCLVAIGGSENFYSVFEGEL+D IPVVHASIAGCRIIG
Sbjct: 1 MAVRASFENNCEVGCFAKLTNAYCLVAIGGSENFYSVFEGELSDAIPVVHASIAGCRIIG 60
Query: 262 RMCVGNRHGLLVPNNTTDQELQHIRNCLPDSVQIRRVEERLSALGNVTTCNDYVALVHPD 441
RMCVGNRHGLLVPNNTTDQELQHIRN LPDSVQIRRVEERLSALGNVTTCNDYVALVHPD
Sbjct: 61 RMCVGNRHGLLVPNNTTDQELQHIRNSLPDSVQIRRVEERLSALGNVTTCNDYVALVHPD 120
Query: 442 LDRETEEILADVLRVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP 621
LDRETEEILADVL+VEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP
Sbjct: 121 LDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP 180
Query: 622 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSL 801
LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEA+PSTIATSMRDSL
Sbjct: 181 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAKPSTIATSMRDSL 240
Query: 802 IDSLT 816
IDSLT
Sbjct: 241 IDSLT 245
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,832,495
Number of extensions: 1209821
Number of successful extensions: 3585
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3569
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 268
Effective length of database: 12,523,851
Effective search space: 3356392068
Effective search space used: 3356392068
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012605
(1115 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_852133.1| eukaryotic translation initiation factor 6 isof... 481 e-136
Alignment gi|NP_002203.1| eukaryotic translation initiation factor 6 isof... 481 e-136
Alignment gi|NP_852131.1| eukaryotic translation initiation factor 6 isof... 251 7e-67
>ref|NP_852133.1| eukaryotic translation initiation factor 6 isoform a [Homo
sapiens].
Length = 245
Score = 481 bits (1239), Expect = e-136
Identities = 241/245 (98%), Positives = 244/245 (99%)
Frame = +1
Query: 82 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELADTIPVVHASIAGCRIIG 261
MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGEL+DTIPVVHASIAGCRIIG
Sbjct: 1 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIG 60
Query: 262 RMCVGNRHGLLVPNNTTDQELQHIRNCLPDSVQIRRVEERLSALGNVTTCNDYVALVHPD 441
RMCVGNRHGLLVPNNTTDQELQHIRN LPD+VQIRRVEERLSALGNVTTCNDYVALVHPD
Sbjct: 61 RMCVGNRHGLLVPNNTTDQELQHIRNSLPDTVQIRRVEERLSALGNVTTCNDYVALVHPD 120
Query: 442 LDRETEEILADVLRVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP 621
LDRETEEILADVL+VEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP
Sbjct: 121 LDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP 180
Query: 622 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSL 801
LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSL
Sbjct: 181 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSL 240
Query: 802 IDSLT 816
IDSLT
Sbjct: 241 IDSLT 245
>ref|NP_002203.1| eukaryotic translation initiation factor 6 isoform a [Homo
sapiens].
Length = 245
Score = 481 bits (1239), Expect = e-136
Identities = 241/245 (98%), Positives = 244/245 (99%)
Frame = +1
Query: 82 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELADTIPVVHASIAGCRIIG 261
MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGEL+DTIPVVHASIAGCRIIG
Sbjct: 1 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIG 60
Query: 262 RMCVGNRHGLLVPNNTTDQELQHIRNCLPDSVQIRRVEERLSALGNVTTCNDYVALVHPD 441
RMCVGNRHGLLVPNNTTDQELQHIRN LPD+VQIRRVEERLSALGNVTTCNDYVALVHPD
Sbjct: 61 RMCVGNRHGLLVPNNTTDQELQHIRNSLPDTVQIRRVEERLSALGNVTTCNDYVALVHPD 120
Query: 442 LDRETEEILADVLRVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP 621
LDRETEEILADVL+VEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP
Sbjct: 121 LDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP 180
Query: 622 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSL 801
LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSL
Sbjct: 181 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSL 240
Query: 802 IDSLT 816
IDSLT
Sbjct: 241 IDSLT 245
>ref|NP_852131.1| eukaryotic translation initiation factor 6 isoform c [Homo
sapiens].
Length = 226
Score = 251 bits (642), Expect = 7e-67
Identities = 152/246 (61%), Positives = 163/246 (66%), Gaps = 1/246 (0%)
Frame = +1
Query: 82 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELADTIPVVHASIAGCRIIG 261
MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFY P + C +
Sbjct: 1 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYR------CGGSPGAYGGGEACAGVK 54
Query: 262 RMCVGNRHGLLVPNNTTDQELQHIRNCLP-DSVQIRRVEERLSALGNVTTCNDYVALVHP 438
G L ++ R P S R+ ++ G A V
Sbjct: 55 SSGSGRVPAPLPRHHRVHVPTVCSRASSPIPSPWCTRLSPAAASSG---------ACVWE 105
Query: 439 DLDRETEEILADVLRVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQV 618
+ + + +V R V ADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQV
Sbjct: 106 TEEILADVLKVEVFRQTV-----ADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQV 160
Query: 619 PLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDS 798
PLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDS
Sbjct: 161 PLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDS 220
Query: 799 LIDSLT 816
LIDSLT
Sbjct: 221 LIDSLT 226
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 48,360,320
Number of extensions: 1453294
Number of successful extensions: 4632
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4618
Number of HSP's successfully gapped: 5
Length of query: 371
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 267
Effective length of database: 14,868,908
Effective search space: 3969998436
Effective search space used: 3969998436
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012605
(1115 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL892260.2| Sus scrofa unplaced genomic scaffold ChrUScaf147 484 e-134
>gb|GL892260.2| Sus scrofa unplaced genomic scaffold ChrUScaf147
Length = 69185
Score = 484 bits (244), Expect = e-134
Identities = 262/268 (97%)
Strand = Plus / Minus
Query: 808 agcctcacctgagtcaccttccatgctgttccctggctccaggccctggacttgggctcc 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17869 agcctcacctgagtcaccttccatgctgttccctggctccaggccctggacttgggctcc 17810
Query: 868 ttcttcacgtcccacccagtctgtcttggatgctggcagggcagtggcaaaaagctcact 927
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 17809 ttcttcacgtcccacccagtctgtcttggatgctggcagggcagtggcagagagctcact 17750
Query: 928 tggactcgtggctggatgcccagccctttacctgtgcccatctcttgaatctatagctaa 987
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 17749 tggactcgtggctggatgcccagcccttcacctgtgcccatctcttgaatctatagctaa 17690
Query: 988 tgtaaaaatctgccacatcatgctggctggcaggtcctgtggcttctggttgaaagctct 1047
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 17689 tgtaaaaatctgccacatcatgctggctggcaggtcctgtggcttctggttgagagctct 17630
Query: 1048 tttgtcctgtgccaccccaattaagggc 1075
||||||||||||||||||| | ||||||
Sbjct: 17629 tttgtcctgtgccaccccattaaagggc 17602
Score = 363 bits (183), Expect = 1e-97
Identities = 183/183 (100%)
Strand = Plus / Minus
Query: 627 ggcgggcactgtgaaccgaggcagcgaggtgatcgctgctgggatggtggtgaatgactg 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20993 ggcgggcactgtgaaccgaggcagcgaggtgatcgctgctgggatggtggtgaatgactg 20934
Query: 687 gtgtgccttctgtggcctggacacaaccagcacagagctgtcagtggtggagagtgtctt 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20933 gtgtgccttctgtggcctggacacaaccagcacagagctgtcagtggtggagagtgtctt 20874
Query: 747 caagctgaacgaagcccagcctagcacaattgctaccagcatgcgggattccctcattga 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20873 caagctgaacgaagcccagcctagcacaattgctaccagcatgcgggattccctcattga 20814
Query: 807 cag 809
|||
Sbjct: 20813 cag 20811
Score = 355 bits (179), Expect = 3e-95
Identities = 179/179 (100%)
Strand = Plus / Minus
Query: 450 ggaaacagaagaaatcctggctgatgtgctcagggttgaagtcttcaggcagacagtggc 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21370 ggaaacagaagaaatcctggctgatgtgctcagggttgaagtcttcaggcagacagtggc 21311
Query: 510 tgatcaggtgctggtaggaagctactgtgtcttcagcaatcagggcgggctggtgcatcc 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21310 tgatcaggtgctggtaggaagctactgtgtcttcagcaatcagggcgggctggtgcatcc 21251
Query: 570 caagacttcaatcgaagaccaggatgagctgtcctctctccttcaggtcccccttgtgg 628
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21250 caagacttcaatcgaagaccaggatgagctgtcctctctccttcaggtcccccttgtgg 21192
Score = 353 bits (178), Expect = 1e-94
Identities = 178/178 (100%)
Strand = Plus / Minus
Query: 274 gggaacaggcatggtctcctggtgcccaacaacaccaccgatcaggagctgcaacacatt 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22047 gggaacaggcatggtctcctggtgcccaacaacaccaccgatcaggagctgcaacacatt 21988
Query: 334 cgcaattgcctcccggattcagtgcagatccggcgggtagaagaacggctctcagccctg 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21987 cgcaattgcctcccggattcagtgcagatccggcgggtagaagaacggctctcagccctg 21928
Query: 394 ggcaatgtcaccacctgcaacgactacgtggccttagtccacccagacttggacaggg 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21927 ggcaatgtcaccacctgcaacgactacgtggccttagtccacccagacttggacaggg 21870
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Minus
Query: 182 tctacagtgtattcgagggagagctggccgataccattcccgtggttcacgcgtccatcg 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22619 tctacagtgtattcgagggagagctggccgataccattcccgtggttcacgcgtccatcg 22560
Query: 242 ccggctgccgcatcatcggccgcatgtgtgtggg 275
||||||||||||||||||||||||||||||||||
Sbjct: 22559 ccggctgccgcatcatcggccgcatgtgtgtggg 22526
Score = 125 bits (63), Expect = 6e-26
Identities = 63/63 (100%)
Strand = Plus / Minus
Query: 2 agggttgaggcggaaacggggacctaaggagggttggggaggactgctgtcgcgtgtgga 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23020 agggttgaggcggaaacggggacctaaggagggttggggaggactgctgtcgcgtgtgga 22961
Query: 62 gat 64
|||
Sbjct: 22960 gat 22958
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,419,565
Number of extensions: 170
Number of successful extensions: 170
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 6
Length of query: 1115
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1094
Effective length of database: 2,808,413,156
Effective search space: 3072403992664
Effective search space used: 3072403992664
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)