Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012622
(1847 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531945.2| PREDICTED: similar to Ras-related GTP-binding p... 672 0.0
Alignment gi|XP_549027.2| PREDICTED: similar to Ras-related GTP binding B... 616 e-176
Alignment gi|XP_852073.1| PREDICTED: similar to Ras-related GTP binding B... 601 e-172
Alignment gi|XP_864934.1| PREDICTED: similar to Ras-related GTP binding B... 477 e-134
Alignment gi|XP_864913.1| PREDICTED: similar to Ras-related GTP-binding p... 124 4e-28
Alignment gi|XP_532231.2| PREDICTED: similar to Ras-related GTP binding D... 76 1e-13
>ref|XP_531945.2| PREDICTED: similar to Ras-related GTP-binding protein ragA [Canis
familiaris].
Length = 411
Score = 672 bits (1733), Expect = 0.0
Identities = 348/403 (86%), Positives = 357/403 (88%), Gaps = 3/403 (0%)
Frame = +2
Query: 197 AETQRLSSPEGQRFSGAAAAVRP---PPALSSEQELTRGGXXXXXXXXXXXXTAQRRAQS 367
A T R SPEG+ F GA+ RP PP SS + G TA+ ++
Sbjct: 13 AGTPRPRSPEGELFPGASQPPRPGRSPPRESSRRRALSG----PALPPSAAGTARLHGRA 68
Query: 368 ASPRDSGPFPPSALQLGRALRPSPRQLRRVMPNTAMKKKVLLMGKSGSGKTSMRSIIFAN 547
P PPSA Q+GRALRP PR+ RRVMPNTAMKKKVLLMGKSGSGKTSMRSIIFAN
Sbjct: 69 CGAPAPRPRPPSAPQVGRALRPIPRRPRRVMPNTAMKKKVLLMGKSGSGKTSMRSIIFAN 128
Query: 548 YIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIY 727
YIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIY
Sbjct: 129 YIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIY 188
Query: 728 VFDVESRELEKDMHYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKEREEDLRR 907
VFDVESRELEKDMHYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKEREEDLRR
Sbjct: 189 VFDVESRELEKDMHYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKEREEDLRR 248
Query: 908 LSRPLECACFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAQIIEADEVLLFERAT 1087
LSRPLECACFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAQIIEADEVLLFERAT
Sbjct: 249 LSRPLECACFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAQIIEADEVLLFERAT 308
Query: 1088 FLVISHYQCKEQRDVHRFEKISNIIKQFKLSCSKLAASFQSMEVRNSNFAAFIDVFTSNT 1267
FLVISHYQCKEQRDVHRFEKISNIIKQFKLSCSKLAASFQSMEVRNSNFAAFID+FTSNT
Sbjct: 309 FLVISHYQCKEQRDVHRFEKISNIIKQFKLSCSKLAASFQSMEVRNSNFAAFIDIFTSNT 368
Query: 1268 YVMVVMSDPSIPSAATLINIRNARKHFEKLERVDGPKHSLLMR 1396
YVMVVMSDPSIPSAATLINIRNARKHFEKLERVDGPKHSLLMR
Sbjct: 369 YVMVVMSDPSIPSAATLINIRNARKHFEKLERVDGPKHSLLMR 411
>ref|XP_549027.2| PREDICTED: similar to Ras-related GTP binding B short isoform isoform
1 [Canis familiaris].
Length = 346
Score = 616 bits (1588), Expect = e-176
Identities = 307/313 (98%), Positives = 310/313 (99%)
Frame = +2
Query: 455 VMPNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLN 634
V+PNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLN
Sbjct: 33 VLPNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLN 92
Query: 635 LWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPD 814
LWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPD
Sbjct: 93 LWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPD 152
Query: 815 AKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIVYQ 994
AKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIVYQ
Sbjct: 153 AKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIVYQ 212
Query: 995 LIPNVQQLEMNLRNFAQIIEADEVLLFERATFLVISHYQCKEQRDVHRFEKISNIIKQFK 1174
LIPNVQQLEMNLRNFA+IIEADEVLLFERATFLVISHYQCKEQRD HRFEKISNIIKQFK
Sbjct: 213 LIPNVQQLEMNLRNFAEIIEADEVLLFERATFLVISHYQCKEQRDAHRFEKISNIIKQFK 272
Query: 1175 LSCSKLAASFQSMEVRNSNFAAFIDVFTSNTYVMVVMSDPSIPSAATLINIRNARKHFEK 1354
LSCSKLAASFQSMEVRNSNFAAFID+FTSNTYVMVVMSDPSIPSAATLINIRNARKHFEK
Sbjct: 273 LSCSKLAASFQSMEVRNSNFAAFIDIFTSNTYVMVVMSDPSIPSAATLINIRNARKHFEK 332
Query: 1355 LERVDGPKHSLLM 1393
LERVDGPK LLM
Sbjct: 333 LERVDGPKQCLLM 345
>ref|XP_852073.1| PREDICTED: similar to Ras-related GTP binding B long isoform isoform
2 [Canis familiaris].
Length = 374
Score = 601 bits (1549), Expect = e-172
Identities = 307/341 (90%), Positives = 310/341 (90%), Gaps = 28/341 (8%)
Frame = +2
Query: 455 VMPNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATI---------------- 586
V+PNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATI
Sbjct: 33 VLPNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATILDRLHSLQINSSFSTY 92
Query: 587 ------------DVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYV 730
DVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYV
Sbjct: 93 SLVDSVGNTKTFDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYV 152
Query: 731 FDVESRELEKDMHYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRL 910
FDVESRELEKDMHYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRL
Sbjct: 153 FDVESRELEKDMHYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRL 212
Query: 911 SRPLECACFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAQIIEADEVLLFERATF 1090
SRPLECACFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFA+IIEADEVLLFERATF
Sbjct: 213 SRPLECACFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAEIIEADEVLLFERATF 272
Query: 1091 LVISHYQCKEQRDVHRFEKISNIIKQFKLSCSKLAASFQSMEVRNSNFAAFIDVFTSNTY 1270
LVISHYQCKEQRD HRFEKISNIIKQFKLSCSKLAASFQSMEVRNSNFAAFID+FTSNTY
Sbjct: 273 LVISHYQCKEQRDAHRFEKISNIIKQFKLSCSKLAASFQSMEVRNSNFAAFIDIFTSNTY 332
Query: 1271 VMVVMSDPSIPSAATLINIRNARKHFEKLERVDGPKHSLLM 1393
VMVVMSDPSIPSAATLINIRNARKHFEKLERVDGPK LLM
Sbjct: 333 VMVVMSDPSIPSAATLINIRNARKHFEKLERVDGPKQCLLM 373
>ref|XP_864934.1| PREDICTED: similar to Ras-related GTP binding B short isoform isoform
4 [Canis familiaris].
Length = 244
Score = 477 bits (1228), Expect = e-134
Identities = 238/243 (97%), Positives = 240/243 (98%)
Frame = +2
Query: 665 MENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAKIFCLVHKM 844
MENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAKIFCLVHKM
Sbjct: 1 MENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAKIFCLVHKM 60
Query: 845 DLVQEDQRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIVYQLIPNVQQLEM 1024
DLVQEDQRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIVYQLIPNVQQLEM
Sbjct: 61 DLVQEDQRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIVYQLIPNVQQLEM 120
Query: 1025 NLRNFAQIIEADEVLLFERATFLVISHYQCKEQRDVHRFEKISNIIKQFKLSCSKLAASF 1204
NLRNFA+IIEADEVLLFERATFLVISHYQCKEQRD HRFEKISNIIKQFKLSCSKLAASF
Sbjct: 121 NLRNFAEIIEADEVLLFERATFLVISHYQCKEQRDAHRFEKISNIIKQFKLSCSKLAASF 180
Query: 1205 QSMEVRNSNFAAFIDVFTSNTYVMVVMSDPSIPSAATLINIRNARKHFEKLERVDGPKHS 1384
QSMEVRNSNFAAFID+FTSNTYVMVVMSDPSIPSAATLINIRNARKHFEKLERVDGPK
Sbjct: 181 QSMEVRNSNFAAFIDIFTSNTYVMVVMSDPSIPSAATLINIRNARKHFEKLERVDGPKQC 240
Query: 1385 LLM 1393
LLM
Sbjct: 241 LLM 243
>ref|XP_864913.1| PREDICTED: similar to Ras-related GTP-binding protein ragA isoform
3 [Canis familiaris].
Length = 60
Score = 124 bits (310), Expect = 4e-28
Identities = 60/60 (100%), Positives = 60/60 (100%)
Frame = +2
Query: 473 MKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGG 652
MKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGG
Sbjct: 1 MKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGG 60
>ref|XP_532231.2| PREDICTED: similar to Ras-related GTP binding D [Canis familiaris].
Length = 415
Score = 76.3 bits (186), Expect = 1e-13
Identities = 56/218 (25%), Positives = 104/218 (47%), Gaps = 5/218 (2%)
Frame = +2
Query: 464 NTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWD 643
+T +K ++LLMG SGK+S++ ++F +T L +T + V + +WD
Sbjct: 73 STEVKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWD 132
Query: 644 CGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAKI 823
GQ F + F + IFR LI+V D + +E + + A N+ D
Sbjct: 133 FPGQIDFFDPTF--DYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNT-DINF 189
Query: 824 FCLVHKMDLVQED-----QRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIV 988
+HK+D + +D QRD+ + ++ + + + TSI+D ++++A+S +V
Sbjct: 190 EVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIFEAFSKVV 249
Query: 989 YQLIPNVQQLEMNLRNFAQIIEADEVLLFERATFLVIS 1102
+LIP + LE L F ++ LF+ + + I+
Sbjct: 250 QKLIPQLPTLENLLNIFISNSGIEKAFLFDVVSKIYIA 287
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 74,582,291
Number of extensions: 2154350
Number of successful extensions: 9080
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 9024
Number of HSP's successfully gapped: 6
Length of query: 615
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 506
Effective length of database: 15,240,880
Effective search space: 7711885280
Effective search space used: 7711885280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012622
(1847 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001790341.2| PREDICTED: Ras-related GTP binding A [Bos ta... 651 0.0
Alignment gi|NP_001030576.1| ras-related GTP-binding protein A [Bos tauru... 625 e-179
Alignment gi|XP_002685294.1| PREDICTED: Ras-related GTP binding A-like [B... 604 e-173
Alignment gi|XP_871161.1| PREDICTED: Ras-related GTP binding A [Bos tauru... 604 e-173
Alignment gi|NP_001068747.1| ras-related GTP-binding protein B [Bos tauru... 599 e-171
Alignment gi|XP_002707883.1| PREDICTED: Rraga protein-like [Bos taurus]. 537 e-152
Alignment gi|NP_001069924.1| ras-related GTP-binding protein C [Bos tauru... 79 1e-14
Alignment gi|NP_001179757.1| ras-related GTP-binding protein D [Bos tauru... 76 9e-14
Alignment gi|XP_002683737.1| PREDICTED: Ras-related GTP binding D, partia... 76 9e-14
>ref|XP_001790341.2| PREDICTED: Ras-related GTP binding A [Bos taurus].
Length = 369
Score = 651 bits (1679), Expect = 0.0
Identities = 341/385 (88%), Positives = 345/385 (89%)
Frame = +2
Query: 242 GAAAAVRPPPALSSEQELTRGGXXXXXXXXXXXXTAQRRAQSASPRDSGPFPPSALQLGR 421
GAAAAVRP ALS +ELT G +Q RA+ P R
Sbjct: 9 GAAAAVRPV-ALSPGKELTGRGP------------SQSRAR-----------PFGFPSCR 44
Query: 422 ALRPSPRQLRRVMPNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHS 601
A RPSPRQLRRVMPNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHS
Sbjct: 45 AQRPSPRQLRRVMPNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHS 104
Query: 602 HVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQS 781
HVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQS
Sbjct: 105 HVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQS 164
Query: 782 CLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECACFRTSIWDET 961
CLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECACFRTSIWDET
Sbjct: 165 CLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECACFRTSIWDET 224
Query: 962 LYKAWSSIVYQLIPNVQQLEMNLRNFAQIIEADEVLLFERATFLVISHYQCKEQRDVHRF 1141
LYKAWSSIVYQLIPNVQQLEMNLRNFAQIIEADEVLLFERATFLVISHYQCKEQRDVHRF
Sbjct: 225 LYKAWSSIVYQLIPNVQQLEMNLRNFAQIIEADEVLLFERATFLVISHYQCKEQRDVHRF 284
Query: 1142 EKISNIIKQFKLSCSKLAASFQSMEVRNSNFAAFIDVFTSNTYVMVVMSDPSIPSAATLI 1321
EKISNIIKQFKLSCSKLA SFQSMEVRNSNFAAFID+FTSNTYVMVVMSDPSIPSAATLI
Sbjct: 285 EKISNIIKQFKLSCSKLATSFQSMEVRNSNFAAFIDIFTSNTYVMVVMSDPSIPSAATLI 344
Query: 1322 NIRNARKHFEKLERVDGPKHSLLMR 1396
NIRNARKHFEKLERVDGPKH LLMR
Sbjct: 345 NIRNARKHFEKLERVDGPKHRLLMR 369
>ref|NP_001030576.1| ras-related GTP-binding protein A [Bos taurus].
Length = 313
Score = 625 bits (1612), Expect = e-179
Identities = 312/313 (99%), Positives = 313/313 (100%)
Frame = +2
Query: 458 MPNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNL 637
MPNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNL
Sbjct: 1 MPNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNL 60
Query: 638 WDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDA 817
WDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDA
Sbjct: 61 WDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDA 120
Query: 818 KIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIVYQL 997
KIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIVYQL
Sbjct: 121 KIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIVYQL 180
Query: 998 IPNVQQLEMNLRNFAQIIEADEVLLFERATFLVISHYQCKEQRDVHRFEKISNIIKQFKL 1177
IPNVQQLEMNLRNFAQIIEADEVLLFERATFLVISHYQCKEQRDVHRFEKISNIIKQFKL
Sbjct: 181 IPNVQQLEMNLRNFAQIIEADEVLLFERATFLVISHYQCKEQRDVHRFEKISNIIKQFKL 240
Query: 1178 SCSKLAASFQSMEVRNSNFAAFIDVFTSNTYVMVVMSDPSIPSAATLINIRNARKHFEKL 1357
SCSKLAASFQSMEVRNSNFAAFID+FTSNTYVMVVMSDPSIPSAATLINIRNARKHFEKL
Sbjct: 241 SCSKLAASFQSMEVRNSNFAAFIDIFTSNTYVMVVMSDPSIPSAATLINIRNARKHFEKL 300
Query: 1358 ERVDGPKHSLLMR 1396
ERVDGPKHSLLMR
Sbjct: 301 ERVDGPKHSLLMR 313
>ref|XP_002685294.1| PREDICTED: Ras-related GTP binding A-like [Bos taurus].
Length = 313
Score = 604 bits (1557), Expect = e-173
Identities = 303/313 (96%), Positives = 307/313 (98%)
Frame = +2
Query: 458 MPNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNL 637
MPNTAMKKKVLLMGKS SGKTSMRSIIFANYIA DTRRLGATI+VEHSHVRFLGNLVLNL
Sbjct: 1 MPNTAMKKKVLLMGKSRSGKTSMRSIIFANYIACDTRRLGATINVEHSHVRFLGNLVLNL 60
Query: 638 WDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDA 817
WDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQN+PDA
Sbjct: 61 WDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNAPDA 120
Query: 818 KIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIVYQL 997
KIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIVYQL
Sbjct: 121 KIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIVYQL 180
Query: 998 IPNVQQLEMNLRNFAQIIEADEVLLFERATFLVISHYQCKEQRDVHRFEKISNIIKQFKL 1177
IPNVQQLEMNL NFAQIIEADEVLLFERATFLVISHYQCKEQRDVHR E ISNII+QFKL
Sbjct: 181 IPNVQQLEMNLGNFAQIIEADEVLLFERATFLVISHYQCKEQRDVHRLETISNIIQQFKL 240
Query: 1178 SCSKLAASFQSMEVRNSNFAAFIDVFTSNTYVMVVMSDPSIPSAATLINIRNARKHFEKL 1357
SCSKLAASFQSMEVRNSNFAAFID+FTSNTYVMVVMSDPSIPSAATLINIRNARKHFEKL
Sbjct: 241 SCSKLAASFQSMEVRNSNFAAFIDIFTSNTYVMVVMSDPSIPSAATLINIRNARKHFEKL 300
Query: 1358 ERVDGPKHSLLMR 1396
ERVDGPK SLLMR
Sbjct: 301 ERVDGPKRSLLMR 313
>ref|XP_871161.1| PREDICTED: Ras-related GTP binding A [Bos taurus].
Length = 313
Score = 604 bits (1557), Expect = e-173
Identities = 303/313 (96%), Positives = 307/313 (98%)
Frame = +2
Query: 458 MPNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNL 637
MPNTAMKKKVLLMGKS SGKTSMRSIIFANYIA DTRRLGATI+VEHSHVRFLGNLVLNL
Sbjct: 1 MPNTAMKKKVLLMGKSRSGKTSMRSIIFANYIACDTRRLGATINVEHSHVRFLGNLVLNL 60
Query: 638 WDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDA 817
WDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQN+PDA
Sbjct: 61 WDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNAPDA 120
Query: 818 KIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIVYQL 997
KIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIVYQL
Sbjct: 121 KIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIVYQL 180
Query: 998 IPNVQQLEMNLRNFAQIIEADEVLLFERATFLVISHYQCKEQRDVHRFEKISNIIKQFKL 1177
IPNVQQLEMNL NFAQIIEADEVLLFERATFLVISHYQCKEQRDVHR E ISNII+QFKL
Sbjct: 181 IPNVQQLEMNLGNFAQIIEADEVLLFERATFLVISHYQCKEQRDVHRLETISNIIQQFKL 240
Query: 1178 SCSKLAASFQSMEVRNSNFAAFIDVFTSNTYVMVVMSDPSIPSAATLINIRNARKHFEKL 1357
SCSKLAASFQSMEVRNSNFAAFID+FTSNTYVMVVMSDPSIPSAATLINIRNARKHFEKL
Sbjct: 241 SCSKLAASFQSMEVRNSNFAAFIDIFTSNTYVMVVMSDPSIPSAATLINIRNARKHFEKL 300
Query: 1358 ERVDGPKHSLLMR 1396
ERVDGPK SLLMR
Sbjct: 301 ERVDGPKRSLLMR 313
>ref|NP_001068747.1| ras-related GTP-binding protein B [Bos taurus].
Length = 374
Score = 599 bits (1545), Expect = e-171
Identities = 306/342 (89%), Positives = 310/342 (90%), Gaps = 28/342 (8%)
Frame = +2
Query: 455 VMPNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATI---------------- 586
V+PNTAMKKKVLLMGKSGSGKTSMRSII ANYIARDTRRLGATI
Sbjct: 33 VLPNTAMKKKVLLMGKSGSGKTSMRSIILANYIARDTRRLGATILDRLHSLQINSSLSTY 92
Query: 587 ------------DVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYV 730
DVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYV
Sbjct: 93 SLVDSVGNTKTFDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYV 152
Query: 731 FDVESRELEKDMHYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRL 910
FDVESRELEKDMHYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRL
Sbjct: 153 FDVESRELEKDMHYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRL 212
Query: 911 SRPLECACFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAQIIEADEVLLFERATF 1090
SRPLEC+CFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFA+IIEADEVLLFERATF
Sbjct: 213 SRPLECSCFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAEIIEADEVLLFERATF 272
Query: 1091 LVISHYQCKEQRDVHRFEKISNIIKQFKLSCSKLAASFQSMEVRNSNFAAFIDVFTSNTY 1270
LVISHYQCKEQRD HRFEKISNIIKQFKLSCSKLAASFQSMEVRNSNFAAFID+FTSNTY
Sbjct: 273 LVISHYQCKEQRDAHRFEKISNIIKQFKLSCSKLAASFQSMEVRNSNFAAFIDIFTSNTY 332
Query: 1271 VMVVMSDPSIPSAATLINIRNARKHFEKLERVDGPKHSLLMR 1396
VMVVMSDPSIPSAATLINIRNARKHFEKLERVDGPK LLMR
Sbjct: 333 VMVVMSDPSIPSAATLINIRNARKHFEKLERVDGPKQCLLMR 374
>ref|XP_002707883.1| PREDICTED: Rraga protein-like [Bos taurus].
Length = 347
Score = 537 bits (1383), Expect = e-152
Identities = 297/386 (76%), Positives = 302/386 (78%), Gaps = 1/386 (0%)
Frame = +2
Query: 242 GAAAAVRPPPALSSEQELTRGGXXXXXXXXXXXXTAQRRAQSASPRDSGPFP-PSALQLG 418
GAAAAVRP ALS +ELT G +Q RA+ PF PS +LG
Sbjct: 31 GAAAAVRPV-ALSPGKELTGRGP------------SQSRAR--------PFGFPSCTELG 69
Query: 419 RALRPSPRQLRRVMPNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEH 598
RA RPSPRQLRRVMPNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEH
Sbjct: 70 RAQRPSPRQLRRVMPNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEH 129
Query: 599 SHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQ 778
SHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQ
Sbjct: 130 SHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQ 189
Query: 779 SCLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECACFRTSIWDE 958
SCLEAILQNSPDAKIFCLVHK DLVQEDQRDLI
Sbjct: 190 SCLEAILQNSPDAKIFCLVHKXDLVQEDQRDLI--------------------------- 222
Query: 959 TLYKAWSSIVYQLIPNVQQLEMNLRNFAQIIEADEVLLFERATFLVISHYQCKEQRDVHR 1138
MNLRNFAQIIEADEVLLFERATFLVISHYQCKEQRDVHR
Sbjct: 223 ---------------------MNLRNFAQIIEADEVLLFERATFLVISHYQCKEQRDVHR 261
Query: 1139 FEKISNIIKQFKLSCSKLAASFQSMEVRNSNFAAFIDVFTSNTYVMVVMSDPSIPSAATL 1318
FEKISNIIKQFKLSCSKLA SFQSMEVRNSNFAAFID+FTSNTYVMVVMSDPSIPSAATL
Sbjct: 262 FEKISNIIKQFKLSCSKLATSFQSMEVRNSNFAAFIDIFTSNTYVMVVMSDPSIPSAATL 321
Query: 1319 INIRNARKHFEKLERVDGPKHSLLMR 1396
INIRNARKHFEKLERVDGPKH LLMR
Sbjct: 322 INIRNARKHFEKLERVDGPKHRLLMR 347
>ref|NP_001069924.1| ras-related GTP-binding protein C [Bos taurus].
Length = 399
Score = 79.0 bits (193), Expect = 1e-14
Identities = 57/214 (26%), Positives = 102/214 (47%), Gaps = 5/214 (2%)
Frame = +2
Query: 476 KKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQ 655
K ++LLMG SGK+S++ ++F +T L +T + + + +WD GQ
Sbjct: 61 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQ 120
Query: 656 DTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAKIFCLV 835
F + F + IFR LIYV D + +E + + +A N PD +
Sbjct: 121 MDFFDPTF--DYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFI 177
Query: 836 HKMDLVQED-----QRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIVYQLI 1000
HK+D + +D QRD+ + ++ L + + TSI+D ++++A+S +V +LI
Sbjct: 178 HKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDHSIFEAFSKVVQKLI 237
Query: 1001 PNVQQLEMNLRNFAQIIEADEVLLFERATFLVIS 1102
P + LE L F ++ LF+ + + I+
Sbjct: 238 PQLPTLENLLNIFISNSGIEKAFLFDVVSKIYIA 271
>ref|NP_001179757.1| ras-related GTP-binding protein D [Bos taurus].
Length = 397
Score = 76.3 bits (186), Expect = 9e-14
Identities = 56/218 (25%), Positives = 104/218 (47%), Gaps = 5/218 (2%)
Frame = +2
Query: 464 NTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWD 643
+T +K ++LLMG SGK+S++ ++F +T L +T + V + +WD
Sbjct: 55 STEVKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWD 114
Query: 644 CGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAKI 823
GQ F + F + IFR LI+V D + +E + + A N+ D
Sbjct: 115 FPGQIDFFDPTF--DYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNT-DINF 171
Query: 824 FCLVHKMDLVQED-----QRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIV 988
+HK+D + +D QRD+ + ++ + + + TSI+D ++++A+S +V
Sbjct: 172 EVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIFEAFSKVV 231
Query: 989 YQLIPNVQQLEMNLRNFAQIIEADEVLLFERATFLVIS 1102
+LIP + LE L F ++ LF+ + + I+
Sbjct: 232 QKLIPQLPTLENLLNIFISNSGIEKAFLFDVVSKIYIA 269
>ref|XP_002683737.1| PREDICTED: Ras-related GTP binding D, partial [Bos taurus].
Length = 350
Score = 76.3 bits (186), Expect = 9e-14
Identities = 56/218 (25%), Positives = 104/218 (47%), Gaps = 5/218 (2%)
Frame = +2
Query: 464 NTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWD 643
+T +K ++LLMG SGK+S++ ++F +T L +T + V + +WD
Sbjct: 8 STEVKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWD 67
Query: 644 CGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAKI 823
GQ F + F + IFR LI+V D + +E + + A N+ D
Sbjct: 68 FPGQIDFFDPTF--DYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNT-DINF 124
Query: 824 FCLVHKMDLVQED-----QRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIV 988
+HK+D + +D QRD+ + ++ + + + TSI+D ++++A+S +V
Sbjct: 125 EVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIFEAFSKVV 184
Query: 989 YQLIPNVQQLEMNLRNFAQIIEADEVLLFERATFLVIS 1102
+LIP + LE L F ++ LF+ + + I+
Sbjct: 185 QKLIPQLPTLENLLNIFISNSGIEKAFLFDVVSKIYIA 222
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 71,296,900
Number of extensions: 2074846
Number of successful extensions: 8827
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 8744
Number of HSP's successfully gapped: 10
Length of query: 615
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 507
Effective length of database: 14,107,870
Effective search space: 7152690090
Effective search space used: 7152690090
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012622
(1847 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001927072.2| PREDICTED: ras-related GTP-binding protein A... 887 0.0
Alignment gi|XP_003360384.1| PREDICTED: ras-related GTP-binding protein B... 491 e-139
Alignment gi|XP_003135168.2| PREDICTED: ras-related GTP-binding protein B... 491 e-139
Alignment gi|XP_003127849.1| PREDICTED: ras-related GTP-binding protein C... 79 8e-15
Alignment gi|NP_001230552.1| ras-related GTP-binding protein D [Sus scrof... 76 5e-14
>ref|XP_001927072.2| PREDICTED: ras-related GTP-binding protein A-like [Sus scrofa].
Length = 516
Score = 887 bits (2293), Expect = 0.0
Identities = 450/464 (96%), Positives = 451/464 (97%)
Frame = +2
Query: 5 IRTPCNRNLSLLGEQNARVLGSPPIFSFGWALQSVSKRAVYRSSLGSDGRERGFSRDRPR 184
IRTPCNRNLSLLGEQNARVLGSPPIFSFGWALQSVSKRAVYRSSLGSDGRERGFSRDRPR
Sbjct: 54 IRTPCNRNLSLLGEQNARVLGSPPIFSFGWALQSVSKRAVYRSSLGSDGRERGFSRDRPR 113
Query: 185 KWVAAETQRLSSPEGQRFSGAAAAVRPPPALSSEQELTRGGXXXXXXXXXXXXTAQRRAQ 364
KWVAAETQRLS PEGQRFSGAAAAVRPPPALSSEQELTRGG TAQRRAQ
Sbjct: 114 KWVAAETQRLS-PEGQRFSGAAAAVRPPPALSSEQELTRGGLSSPELAPSASPTAQRRAQ 172
Query: 365 SASPRDSGPFPPSALQLGRALRPSPRQLRRVMPNTAMKKKVLLMGKSGSGKTSMRSIIFA 544
SASPRDSGPFPPSALQLGRALRPSPRQLRRVMPNTAMKKKVLLMGKSGSGKTSMRSIIFA
Sbjct: 173 SASPRDSGPFPPSALQLGRALRPSPRQLRRVMPNTAMKKKVLLMGKSGSGKTSMRSIIFA 232
Query: 545 NYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLI 724
NYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLI
Sbjct: 233 NYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLI 292
Query: 725 YVFDVESRELEKDMHYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKEREEDLR 904
YVFDVESRELEKDMHYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKEREEDLR
Sbjct: 293 YVFDVESRELEKDMHYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKEREEDLR 352
Query: 905 RLSRPLECACFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAQIIEADEVLLFERA 1084
RLSRPLECACFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAQIIEADEVLLFERA
Sbjct: 353 RLSRPLECACFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAQIIEADEVLLFERA 412
Query: 1085 TFLVISHYQCKEQRDVHRFEKISNIIKQFKLSCSKLAASFQSMEVRNSNFAAFIDVFTSN 1264
TFLVISHYQCKEQRDVHRFEKISNIIKQFKLSCSKLAASFQSMEVRNSNFAAFID+FTSN
Sbjct: 413 TFLVISHYQCKEQRDVHRFEKISNIIKQFKLSCSKLAASFQSMEVRNSNFAAFIDIFTSN 472
Query: 1265 TYVMVVMSDPSIPSAATLINIRNARKHFEKLERVDGPKHSLLMR 1396
TYVMVVMSDPSIPSAATLINIRNARKHFEKLERVDGPKHSLLMR
Sbjct: 473 TYVMVVMSDPSIPSAATLINIRNARKHFEKLERVDGPKHSLLMR 516
>ref|XP_003360384.1| PREDICTED: ras-related GTP-binding protein B-like [Sus scrofa].
Length = 280
Score = 491 bits (1265), Expect = e-139
Identities = 249/280 (88%), Positives = 258/280 (92%)
Frame = +2
Query: 557 RDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFD 736
R + + + DVE S V + + +C QDTFMENYFTSQRDNIFRNVEVLIYVFD
Sbjct: 2 RPEQTVNSPCDVEISQVCLTAEICF-IAECFRQDTFMENYFTSQRDNIFRNVEVLIYVFD 60
Query: 737 VESRELEKDMHYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSR 916
VESRELEKDMHYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSR
Sbjct: 61 VESRELEKDMHYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSR 120
Query: 917 PLECACFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAQIIEADEVLLFERATFLV 1096
PLEC+CFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFA+IIEADEVLLFERATFLV
Sbjct: 121 PLECSCFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAEIIEADEVLLFERATFLV 180
Query: 1097 ISHYQCKEQRDVHRFEKISNIIKQFKLSCSKLAASFQSMEVRNSNFAAFIDVFTSNTYVM 1276
ISHYQCKEQRD HRFEKISNIIKQFKLSCSKLAASFQSMEVRNSNFAAFID+FTSNTYVM
Sbjct: 181 ISHYQCKEQRDAHRFEKISNIIKQFKLSCSKLAASFQSMEVRNSNFAAFIDIFTSNTYVM 240
Query: 1277 VVMSDPSIPSAATLINIRNARKHFEKLERVDGPKHSLLMR 1396
VVMSDPSIPSAATLINIRNARKHFEKLERVDGPK LLMR
Sbjct: 241 VVMSDPSIPSAATLINIRNARKHFEKLERVDGPKQCLLMR 280
>ref|XP_003135168.2| PREDICTED: ras-related GTP-binding protein B-like [Sus scrofa].
Length = 421
Score = 491 bits (1264), Expect = e-139
Identities = 244/250 (97%), Positives = 247/250 (98%)
Frame = +2
Query: 647 GGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAKIF 826
GGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAKIF
Sbjct: 172 GGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAKIF 231
Query: 827 CLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIVYQLIPN 1006
CLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLEC+CFRTSIWDETLYKAWSSIVYQLIPN
Sbjct: 232 CLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECSCFRTSIWDETLYKAWSSIVYQLIPN 291
Query: 1007 VQQLEMNLRNFAQIIEADEVLLFERATFLVISHYQCKEQRDVHRFEKISNIIKQFKLSCS 1186
VQQLEMNLRNFA+IIEADEVLLFERATFLVISHYQCKEQRD HRFEKISNIIKQFKLSCS
Sbjct: 292 VQQLEMNLRNFAEIIEADEVLLFERATFLVISHYQCKEQRDAHRFEKISNIIKQFKLSCS 351
Query: 1187 KLAASFQSMEVRNSNFAAFIDVFTSNTYVMVVMSDPSIPSAATLINIRNARKHFEKLERV 1366
KLAASFQSMEVRNSNFAAFID+FTSNTYVMVVMSDPSIPSAATLINIRNARKHFEKLERV
Sbjct: 352 KLAASFQSMEVRNSNFAAFIDIFTSNTYVMVVMSDPSIPSAATLINIRNARKHFEKLERV 411
Query: 1367 DGPKHSLLMR 1396
DGPK LLMR
Sbjct: 412 DGPKQCLLMR 421
>ref|XP_003127849.1| PREDICTED: ras-related GTP-binding protein C [Sus scrofa].
Length = 399
Score = 79.0 bits (193), Expect = 8e-15
Identities = 57/214 (26%), Positives = 102/214 (47%), Gaps = 5/214 (2%)
Frame = +2
Query: 476 KKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQ 655
K ++LLMG SGK+S++ ++F +T L +T + + + +WD GQ
Sbjct: 61 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQ 120
Query: 656 DTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAKIFCLV 835
F + F + IFR LIYV D + +E + + +A N PD +
Sbjct: 121 MDFFDPTF--DYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFI 177
Query: 836 HKMDLVQED-----QRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIVYQLI 1000
HK+D + +D QRD+ + ++ L + + TSI+D ++++A+S +V +LI
Sbjct: 178 HKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDHSIFEAFSKVVQKLI 237
Query: 1001 PNVQQLEMNLRNFAQIIEADEVLLFERATFLVIS 1102
P + LE L F ++ LF+ + + I+
Sbjct: 238 PQLPTLENLLNIFISNSGIEKAFLFDVVSKIYIA 271
>ref|NP_001230552.1| ras-related GTP-binding protein D [Sus scrofa].
Length = 396
Score = 76.3 bits (186), Expect = 5e-14
Identities = 56/218 (25%), Positives = 104/218 (47%), Gaps = 5/218 (2%)
Frame = +2
Query: 464 NTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWD 643
+T +K ++LLMG SGK+S++ ++F +T L +T + V + +WD
Sbjct: 54 STEVKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWD 113
Query: 644 CGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAKI 823
GQ F + F + IFR LI+V D + +E + + A N+ D
Sbjct: 114 FPGQIDFFDPTF--DYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNT-DINF 170
Query: 824 FCLVHKMDLVQED-----QRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIV 988
+HK+D + +D QRD+ + ++ + + + TSI+D ++++A+S +V
Sbjct: 171 EVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIFEAFSKVV 230
Query: 989 YQLIPNVQQLEMNLRNFAQIIEADEVLLFERATFLVIS 1102
+LIP + LE L F ++ LF+ + + I+
Sbjct: 231 QKLIPQLPTLENLLNIFISNSGIEKAFLFDVVSKIYIA 268
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 45,947,413
Number of extensions: 1338670
Number of successful extensions: 5837
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5779
Number of HSP's successfully gapped: 5
Length of query: 615
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 510
Effective length of database: 8,729,747
Effective search space: 4452170970
Effective search space used: 4452170970
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012622
(1847 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_848463.1| ras-related GTP-binding protein A [Mus musculus]. 625 e-179
Alignment gi|NP_001004154.1| ras-related GTP-binding protein B [Mus muscu... 598 e-171
Alignment gi|NP_059503.2| ras-related GTP-binding protein C [Mus musculus]. 79 1e-14
Alignment gi|NP_081767.2| ras-related GTP-binding protein D [Mus musculus]. 75 1e-13
>ref|NP_848463.1| ras-related GTP-binding protein A [Mus musculus].
Length = 313
Score = 625 bits (1612), Expect = e-179
Identities = 312/313 (99%), Positives = 313/313 (100%)
Frame = +2
Query: 458 MPNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNL 637
MPNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNL
Sbjct: 1 MPNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNL 60
Query: 638 WDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDA 817
WDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDA
Sbjct: 61 WDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDA 120
Query: 818 KIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIVYQL 997
KIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIVYQL
Sbjct: 121 KIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIVYQL 180
Query: 998 IPNVQQLEMNLRNFAQIIEADEVLLFERATFLVISHYQCKEQRDVHRFEKISNIIKQFKL 1177
IPNVQQLEMNLRNFAQIIEADEVLLFERATFLVISHYQCKEQRDVHRFEKISNIIKQFKL
Sbjct: 181 IPNVQQLEMNLRNFAQIIEADEVLLFERATFLVISHYQCKEQRDVHRFEKISNIIKQFKL 240
Query: 1178 SCSKLAASFQSMEVRNSNFAAFIDVFTSNTYVMVVMSDPSIPSAATLINIRNARKHFEKL 1357
SCSKLAASFQSMEVRNSNFAAFID+FTSNTYVMVVMSDPSIPSAATLINIRNARKHFEKL
Sbjct: 241 SCSKLAASFQSMEVRNSNFAAFIDIFTSNTYVMVVMSDPSIPSAATLINIRNARKHFEKL 300
Query: 1358 ERVDGPKHSLLMR 1396
ERVDGPKHSLLMR
Sbjct: 301 ERVDGPKHSLLMR 313
>ref|NP_001004154.1| ras-related GTP-binding protein B [Mus musculus].
Length = 374
Score = 598 bits (1541), Expect = e-171
Identities = 305/341 (89%), Positives = 309/341 (90%), Gaps = 28/341 (8%)
Frame = +2
Query: 458 MPNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATI----------------- 586
MPN AMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATI
Sbjct: 34 MPNAAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATILDRIHSLQINSSLSTYS 93
Query: 587 -----------DVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVF 733
DVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVF
Sbjct: 94 LVDSVGNTKTFDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVF 153
Query: 734 DVESRELEKDMHYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLS 913
DVESRELEKDMHYYQSCLEAILQNSP+AKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLS
Sbjct: 154 DVESRELEKDMHYYQSCLEAILQNSPEAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLS 213
Query: 914 RPLECACFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAQIIEADEVLLFERATFL 1093
RPLEC+CFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFA+IIEADEVLLFERATFL
Sbjct: 214 RPLECSCFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAEIIEADEVLLFERATFL 273
Query: 1094 VISHYQCKEQRDVHRFEKISNIIKQFKLSCSKLAASFQSMEVRNSNFAAFIDVFTSNTYV 1273
VISHYQCKEQRD HRFEKISNIIKQFKLSCSKLAASFQSMEVRNSNFAAFID+FTSNTYV
Sbjct: 274 VISHYQCKEQRDAHRFEKISNIIKQFKLSCSKLAASFQSMEVRNSNFAAFIDIFTSNTYV 333
Query: 1274 MVVMSDPSIPSAATLINIRNARKHFEKLERVDGPKHSLLMR 1396
MVVMSDPSIPSAATLINIRNARKHFEKLERVDGPK LLMR
Sbjct: 334 MVVMSDPSIPSAATLINIRNARKHFEKLERVDGPKQCLLMR 374
>ref|NP_059503.2| ras-related GTP-binding protein C [Mus musculus].
Length = 398
Score = 79.0 bits (193), Expect = 1e-14
Identities = 57/214 (26%), Positives = 102/214 (47%), Gaps = 5/214 (2%)
Frame = +2
Query: 476 KKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQ 655
K ++LLMG SGK+S++ ++F +T L +T + + + +WD GQ
Sbjct: 60 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQ 119
Query: 656 DTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAKIFCLV 835
F + F + IFR LIYV D + +E + + +A N PD +
Sbjct: 120 MDFFDPTF--DYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFI 176
Query: 836 HKMDLVQED-----QRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIVYQLI 1000
HK+D + +D QRD+ + ++ L + + TSI+D ++++A+S +V +LI
Sbjct: 177 HKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDHSIFEAFSKVVQKLI 236
Query: 1001 PNVQQLEMNLRNFAQIIEADEVLLFERATFLVIS 1102
P + LE L F ++ LF+ + + I+
Sbjct: 237 PQLPTLENLLNIFISNSGIEKAFLFDVVSKIYIA 270
>ref|NP_081767.2| ras-related GTP-binding protein D [Mus musculus].
Length = 399
Score = 75.5 bits (184), Expect = 1e-13
Identities = 56/218 (25%), Positives = 104/218 (47%), Gaps = 5/218 (2%)
Frame = +2
Query: 464 NTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWD 643
+T +K ++LLMG SGK+S++ ++F +T L +T + V + +WD
Sbjct: 57 STEVKPRILLMGLRRSGKSSIQKVVFHKMSPSETLFLESTNRICREDVSNSSFVNFQIWD 116
Query: 644 CGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAKI 823
GQ F + F + IFR LI+V D + +E + + A N+ D
Sbjct: 117 FPGQIDFFDPTF--DYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNT-DINF 173
Query: 824 FCLVHKMDLVQED-----QRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIV 988
+HK+D + +D QRD+ + ++ + + + TSI+D ++++A+S +V
Sbjct: 174 EVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIFEAFSKVV 233
Query: 989 YQLIPNVQQLEMNLRNFAQIIEADEVLLFERATFLVIS 1102
+LIP + LE L F ++ LF+ + + I+
Sbjct: 234 QKLIPQLPTLENLLNIFISNSGIEKAFLFDVVSKIYIA 271
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 61,760,048
Number of extensions: 1741889
Number of successful extensions: 6787
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6726
Number of HSP's successfully gapped: 4
Length of query: 615
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 508
Effective length of database: 12,403,707
Effective search space: 6301083156
Effective search space used: 6301083156
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012622
(1847 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006561.1| ras-related GTP-binding protein A [Homo sapiens]. 625 e-179
Alignment gi|NP_006055.3| ras-related GTP-binding protein B short isoform... 617 e-176
Alignment gi|NP_057740.2| ras-related GTP-binding protein B long isoform ... 602 e-172
Alignment gi|NP_071440.1| ras-related GTP-binding protein C [Homo sapiens]. 79 1e-14
Alignment gi|NP_067067.1| ras-related GTP-binding protein D [Homo sapiens]. 76 9e-14
>ref|NP_006561.1| ras-related GTP-binding protein A [Homo sapiens].
Length = 313
Score = 625 bits (1612), Expect = e-179
Identities = 312/313 (99%), Positives = 313/313 (100%)
Frame = +2
Query: 458 MPNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNL 637
MPNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNL
Sbjct: 1 MPNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNL 60
Query: 638 WDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDA 817
WDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDA
Sbjct: 61 WDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDA 120
Query: 818 KIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIVYQL 997
KIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIVYQL
Sbjct: 121 KIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIVYQL 180
Query: 998 IPNVQQLEMNLRNFAQIIEADEVLLFERATFLVISHYQCKEQRDVHRFEKISNIIKQFKL 1177
IPNVQQLEMNLRNFAQIIEADEVLLFERATFLVISHYQCKEQRDVHRFEKISNIIKQFKL
Sbjct: 181 IPNVQQLEMNLRNFAQIIEADEVLLFERATFLVISHYQCKEQRDVHRFEKISNIIKQFKL 240
Query: 1178 SCSKLAASFQSMEVRNSNFAAFIDVFTSNTYVMVVMSDPSIPSAATLINIRNARKHFEKL 1357
SCSKLAASFQSMEVRNSNFAAFID+FTSNTYVMVVMSDPSIPSAATLINIRNARKHFEKL
Sbjct: 241 SCSKLAASFQSMEVRNSNFAAFIDIFTSNTYVMVVMSDPSIPSAATLINIRNARKHFEKL 300
Query: 1358 ERVDGPKHSLLMR 1396
ERVDGPKHSLLMR
Sbjct: 301 ERVDGPKHSLLMR 313
>ref|NP_006055.3| ras-related GTP-binding protein B short isoform [Homo sapiens].
Length = 346
Score = 617 bits (1590), Expect = e-176
Identities = 307/314 (97%), Positives = 311/314 (99%)
Frame = +2
Query: 455 VMPNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLN 634
V+PNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLN
Sbjct: 33 VLPNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLN 92
Query: 635 LWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPD 814
LWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPD
Sbjct: 93 LWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPD 152
Query: 815 AKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIVYQ 994
AKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLEC+CFRTSIWDETLYKAWSSIVYQ
Sbjct: 153 AKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECSCFRTSIWDETLYKAWSSIVYQ 212
Query: 995 LIPNVQQLEMNLRNFAQIIEADEVLLFERATFLVISHYQCKEQRDVHRFEKISNIIKQFK 1174
LIPNVQQLEMNLRNFA+IIEADEVLLFERATFLVISHYQCKEQRD HRFEKISNIIKQFK
Sbjct: 213 LIPNVQQLEMNLRNFAEIIEADEVLLFERATFLVISHYQCKEQRDAHRFEKISNIIKQFK 272
Query: 1175 LSCSKLAASFQSMEVRNSNFAAFIDVFTSNTYVMVVMSDPSIPSAATLINIRNARKHFEK 1354
LSCSKLAASFQSMEVRNSNFAAFID+FTSNTYVMVVMSDPSIPSAATLINIRNARKHFEK
Sbjct: 273 LSCSKLAASFQSMEVRNSNFAAFIDIFTSNTYVMVVMSDPSIPSAATLINIRNARKHFEK 332
Query: 1355 LERVDGPKHSLLMR 1396
LERVDGPK LLMR
Sbjct: 333 LERVDGPKQCLLMR 346
>ref|NP_057740.2| ras-related GTP-binding protein B long isoform [Homo sapiens].
Length = 374
Score = 602 bits (1551), Expect = e-172
Identities = 307/342 (89%), Positives = 311/342 (90%), Gaps = 28/342 (8%)
Frame = +2
Query: 455 VMPNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATI---------------- 586
V+PNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATI
Sbjct: 33 VLPNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATILDRIHSLQINSSLSTY 92
Query: 587 ------------DVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYV 730
DVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYV
Sbjct: 93 SLVDSVGNTKTFDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYV 152
Query: 731 FDVESRELEKDMHYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRL 910
FDVESRELEKDMHYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRL
Sbjct: 153 FDVESRELEKDMHYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRL 212
Query: 911 SRPLECACFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAQIIEADEVLLFERATF 1090
SRPLEC+CFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFA+IIEADEVLLFERATF
Sbjct: 213 SRPLECSCFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAEIIEADEVLLFERATF 272
Query: 1091 LVISHYQCKEQRDVHRFEKISNIIKQFKLSCSKLAASFQSMEVRNSNFAAFIDVFTSNTY 1270
LVISHYQCKEQRD HRFEKISNIIKQFKLSCSKLAASFQSMEVRNSNFAAFID+FTSNTY
Sbjct: 273 LVISHYQCKEQRDAHRFEKISNIIKQFKLSCSKLAASFQSMEVRNSNFAAFIDIFTSNTY 332
Query: 1271 VMVVMSDPSIPSAATLINIRNARKHFEKLERVDGPKHSLLMR 1396
VMVVMSDPSIPSAATLINIRNARKHFEKLERVDGPK LLMR
Sbjct: 333 VMVVMSDPSIPSAATLINIRNARKHFEKLERVDGPKQCLLMR 374
>ref|NP_071440.1| ras-related GTP-binding protein C [Homo sapiens].
Length = 399
Score = 79.0 bits (193), Expect = 1e-14
Identities = 57/214 (26%), Positives = 102/214 (47%), Gaps = 5/214 (2%)
Frame = +2
Query: 476 KKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQ 655
K ++LLMG SGK+S++ ++F +T L +T + + + +WD GQ
Sbjct: 61 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQ 120
Query: 656 DTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAKIFCLV 835
F + F + IFR LIYV D + +E + + +A N PD +
Sbjct: 121 MDFFDPTF--DYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFI 177
Query: 836 HKMDLVQED-----QRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIVYQLI 1000
HK+D + +D QRD+ + ++ L + + TSI+D ++++A+S +V +LI
Sbjct: 178 HKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDHSIFEAFSKVVQKLI 237
Query: 1001 PNVQQLEMNLRNFAQIIEADEVLLFERATFLVIS 1102
P + LE L F ++ LF+ + + I+
Sbjct: 238 PQLPTLENLLNIFISNSGIEKAFLFDVVSKIYIA 271
>ref|NP_067067.1| ras-related GTP-binding protein D [Homo sapiens].
Length = 400
Score = 76.3 bits (186), Expect = 9e-14
Identities = 56/218 (25%), Positives = 104/218 (47%), Gaps = 5/218 (2%)
Frame = +2
Query: 464 NTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWD 643
+T +K ++LLMG SGK+S++ ++F +T L +T + V + +WD
Sbjct: 58 STEVKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWD 117
Query: 644 CGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAKI 823
GQ F + F + IFR LI+V D + +E + + A N+ D
Sbjct: 118 FPGQIDFFDPTF--DYEMIFRGTGALIFVIDSQDDYMEALARLHLTVTRAYKVNT-DINF 174
Query: 824 FCLVHKMDLVQED-----QRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIV 988
+HK+D + +D QRD+ + ++ + + + TSI+D ++++A+S +V
Sbjct: 175 EVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKIHLSFYLTSIYDHSIFEAFSKVV 234
Query: 989 YQLIPNVQQLEMNLRNFAQIIEADEVLLFERATFLVIS 1102
+LIP + LE L F ++ LF+ + + I+
Sbjct: 235 QKLIPQLPTLENLLNIFISNSGIEKAFLFDVVSKIYIA 272
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 72,962,683
Number of extensions: 2097296
Number of successful extensions: 8355
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 8311
Number of HSP's successfully gapped: 5
Length of query: 615
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 506
Effective length of database: 14,704,088
Effective search space: 7440268528
Effective search space used: 7440268528
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012622
(1847 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 3384 0.0
Sscrofa_ChrX 218 8e-54
Sscrofa_Chr09 62 1e-06
>Sscrofa_Chr01
|| Length = 315321322
Score = 3384 bits (1707), Expect = 0.0
Identities = 1793/1831 (97%), Gaps = 3/1831 (0%)
Strand = Plus / Minus
Query: 3 acatacgtacaccttgcaatcgtaacctcagtttattaggagaacagaacgccagagtcc 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227421445 acatacgtacaccttgcaatcgtaacctcagtttattaggagaacagaacgccagagtcc 227421386
Query: 63 tgggttctccccccattttctctttcggatgggccctgcagagtgtcagtaaaagagcag 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227421385 tgggttctccccccattttctctttcggatgggccctgcagagtgtcagtaaaagagcag 227421326
Query: 123 tttatcgaagctcgttgggcagcgacggccgagagcgcgggttctcgcgagatcgccccc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227421325 tttatcgaagctcgttgggcagcgacggccgagagcgcgggttctcgcgagatcgccccc 227421266
Query: 183 ggaagtgggtggcagcggagacgcagagactctcctctccggaaggccagcgtttttccg 242
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 227421265 ggaagtgggtggcagcggagacgcagagactctc---tccggaaggccagcgtttttccg 227421209
Query: 243 gagctgctgcagctgtccgccccccaccggcgctctcctctgagcaagaactcactcgtg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227421208 gagctgctgcagctgtccgccccccaccggcgctctcctctgagcaagaactcactcgtg 227421149
Query: 303 gcggcctttccagccccgagctcgcaccttcggcttccccgactgcacagcggcgggccc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227421148 gcggcctttccagccccgagctcgcaccttcggcttccccgactgcacagcggcgggccc 227421089
Query: 363 agtcagcgagcccccgcgactccggccccttccctccctccgcgctgcagttaggccgcg 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227421088 agtcagcgagcccccgcgactccggccccttccctccctccgcgctgcagttaggccgcg 227421029
Query: 423 ccctgaggcccagtccgcggcagctccggcgggtgatgccaaatacagccatgaagaaaa 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227421028 ccctgaggcccagtccgcggcagctccggcgggtgatgccaaatacagccatgaagaaaa 227420969
Query: 483 aggtgctgttgatggggaagagcgggtcggggaagaccagcatgaggtcgattatctttg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227420968 aggtgctgttgatggggaagagcgggtcggggaagaccagcatgaggtcgattatctttg 227420909
Query: 543 caaattatatcgctcgcgacacccggcgcctcggtgccaccattgatgtggagcactccc 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227420908 caaattatatcgctcgcgacacccggcgcctcggtgccaccattgatgtggagcactccc 227420849
Query: 603 acgtacgatttctgggcaacctggtgctgaacctgtgggactgtggcggtcaggacacct 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227420848 acgtacgatttctgggcaacctggtgctgaacctgtgggactgtggcggtcaggacacct 227420789
Query: 663 tcatggaaaattatttcaccagccagcgagacaacattttccgtaatgtcgaggtcctga 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227420788 tcatggaaaattatttcaccagccagcgagacaacattttccgtaatgtcgaggtcctga 227420729
Query: 723 tttacgtgttcgacgtggagagccgcgaactggaaaaggacatgcattattaccagtcct 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227420728 tttacgtgttcgacgtggagagccgcgaactggaaaaggacatgcattattaccagtcct 227420669
Query: 783 gtctggaggccatcctccagaactctcctgatgctaaaatcttctgcctggtgcacaaaa 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227420668 gtctggaggccatcctccagaactctcctgatgctaaaatcttctgcctggtgcacaaaa 227420609
Query: 843 tggatctggttcaggaagatcagcgtgacctgatttttaaagagcgagaggaagacctga 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227420608 tggatctggttcaggaagatcagcgtgacctgatttttaaagagcgagaggaagacctga 227420549
Query: 903 ggcgtttgtctcgccctctcgagtgcgcctgtttccgaacatccatctgggatgaaacgc 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227420548 ggcgtttgtctcgccctctcgagtgcgcctgtttccgaacatccatctgggatgaaacgc 227420489
Query: 963 tctacaaagcctggtctagcatcgtctatcagctgattcccaatgttcagcagctggaga 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227420488 tctacaaagcctggtctagcatcgtctatcagctgattcccaatgttcagcagctggaga 227420429
Query: 1023 tgaacctcaggaattttgcccaaattattgaggccgatgaagttctgctgttcgagagag 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227420428 tgaacctcaggaattttgcccaaattattgaggccgatgaagttctgctgttcgagagag 227420369
Query: 1083 caaccttcttggtcatttcccattaccagtgcaaagagcagcgcgatgtccatcggttcg 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227420368 caaccttcttggtcatttcccattaccagtgcaaagagcagcgcgatgtccatcggttcg 227420309
Query: 1143 agaagatcagcaatattattaagcagttcaagctgagctgcagtaaattggccgcttcct 1202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227420308 agaagatcagcaatattattaagcagttcaagctgagctgcagtaaattggccgcttcct 227420249
Query: 1203 tccagagcatggaggttaggaattctaacttcgctgctttcatcgacgtcttcacatcaa 1262
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 227420248 tccagagcatggaggttaggaattctaacttcgctgctttcatcgacatcttcacatcaa 227420189
Query: 1263 acacctacgtgatggtggttatgtctgatccctcgatcccttctgcagctacactgatca 1322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227420188 acacctacgtgatggtggttatgtctgatccctcgatcccttctgcagctacactgatca 227420129
Query: 1323 acattcgcaatgccaggaaacactttgagaagctggagagagtggacggccccaagcaca 1382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227420128 acattcgcaatgccaggaaacactttgagaagctggagagagtggacggccccaagcaca 227420069
Query: 1383 gcctccttatgcgttgaatactgccaaaatacgctttctgaaaatgctgaattgcctttc 1442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227420068 gcctccttatgcgttgaatactgccaaaatacgctttctgaaaatgctgaattgcctttc 227420009
Query: 1443 tnnnnnnnnnnnnnnnngcatccttttctttttaatattcataatgttgtgtgcttaaaa 1502
| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227420008 tccccccacccccacccgcatccttttctttttaatattcataatgttgtgtgcttaaaa 227419949
Query: 1503 gtgggctttgaaatgtgtgctgcttactccttccttctctttcttccctgctccccaatc 1562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227419948 gtgggctttgaaatgtgtgctgcttactccttccttctctttcttccctgctccccaatc 227419889
Query: 1563 tttaagccttggacgctatttactcagctatccagtagagctttcaagatggcctttctg 1622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227419888 tttaagccttggacgctatttactcagctatccagtagagctttcaagatggcctttctg 227419829
Query: 1623 aaaagttggtatggtaaacagtaaagtaggtgnnnnnnnnnnnnnctctgattacctggt 1682
|||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 227419828 aaaagttggtatggtaaacagtaaagtaggtggtgtgtgtgtgtgctctgattacctggt 227419769
Query: 1683 tataaagatatacacatcaaagcctttacattaccttcctgtatccnttgattgcaaaga 1742
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 227419768 tataaagatatacacatcaaagcctttacattaccttcctgtattccttgattgcaaaga 227419709
Query: 1743 tggaatgttattttatcagcaaggtattaaaatgcatttataaattctacttggcttcca 1802
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 227419708 tggaatgttattttatcagcaaggtattaaaatgcatttataaattctacttggcttcaa 227419649
Query: 1803 tcatgaataaacatttgcttggtagccattt 1833
||||||||||||||||||||| |||| ||||
Sbjct: 227419648 tcatgaataaacatttgcttgttagcaattt 227419618
>Sscrofa_ChrX
|| Length = 144288218
Score = 218 bits (110), Expect = 8e-54
Identities = 194/222 (87%)
Strand = Plus / Minus
Query: 653 caggacaccttcatggaaaattatttcaccagccagcgagacaacattttccgtaatgtc 712
||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| |||||
Sbjct: 54165860 caggacaccttcatggaaaattatttcactagccaacgagacaacatcttccgaaatgtg 54165801
Query: 713 gaggtcctgatttacgtgttcgacgtggagagccgcgaactggaaaaggacatgcattat 772
||||| || ||||| || || || ||||| ||||| |||||||||||||||||||| |||
Sbjct: 54165800 gaggttctaatttatgtctttgatgtggaaagccgtgaactggaaaaggacatgcactat 54165741
Query: 773 taccagtcctgtctggaggccatcctccagaactctcctgatgctaaaatcttctgcctg 832
||||| || || || |||||||| || ||||||||||| ||||| |||||||| ||||||
Sbjct: 54165740 taccaatcatgcctagaggccattctgcagaactctccagatgccaaaatcttttgcctg 54165681
Query: 833 gtgcacaaaatggatctggttcaggaagatcagcgtgacctg 874
|| ||||||||||||||||| ||||| ||||| || ||||||
Sbjct: 54165680 gtacacaaaatggatctggtacaggaggatcaacgagacctg 54165639
Score = 218 bits (110), Expect = 8e-54
Identities = 194/222 (87%)
Strand = Plus / Minus
Query: 653 caggacaccttcatggaaaattatttcaccagccagcgagacaacattttccgtaatgtc 712
||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| |||||
Sbjct: 54501907 caggacaccttcatggaaaattatttcactagccaacgagacaacatcttccgaaatgtg 54501848
Query: 713 gaggtcctgatttacgtgttcgacgtggagagccgcgaactggaaaaggacatgcattat 772
||||| || ||||| || || || ||||| ||||| |||||||||||||||||||| |||
Sbjct: 54501847 gaggttctaatttatgtctttgatgtggaaagccgtgaactggaaaaggacatgcactat 54501788
Query: 773 taccagtcctgtctggaggccatcctccagaactctcctgatgctaaaatcttctgcctg 832
||||| || || || |||||||| || ||||||||||| ||||| |||||||| ||||||
Sbjct: 54501787 taccaatcatgcctagaggccattctgcagaactctccagatgccaaaatcttttgcctg 54501728
Query: 833 gtgcacaaaatggatctggttcaggaagatcagcgtgacctg 874
|| ||||||||||||||||| ||||| ||||| || ||||||
Sbjct: 54501727 gtacacaaaatggatctggtacaggaggatcaacgagacctg 54501686
Score = 99.6 bits (50), Expect = 5e-18
Identities = 95/110 (86%)
Strand = Plus / Minus
Query: 974 tggtctagcatcgtctatcagctgattcccaatgttcagcagctggagatgaacctcagg 1033
||||| ||||| || |||||||||||||||||||| || ||||| || |||||||| |||
Sbjct: 54160451 tggtcaagcattgtttatcagctgattcccaatgtccaacagctagaaatgaacctaagg 54160392
Query: 1034 aattttgcccaaattattgaggccgatgaagttctgctgttcgagagagc 1083
|||||||| ||||||||||||| |||||||| || || || ||||||||
Sbjct: 54160391 aattttgctgaaattattgaggctgatgaagtgcttctatttgagagagc 54160342
Score = 99.6 bits (50), Expect = 5e-18
Identities = 95/110 (86%)
Strand = Plus / Minus
Query: 974 tggtctagcatcgtctatcagctgattcccaatgttcagcagctggagatgaacctcagg 1033
||||| ||||| || |||||||||||||||||||| || ||||| || |||||||| |||
Sbjct: 54496498 tggtcaagcattgtttatcagctgattcccaatgtccaacagctagaaatgaacctaagg 54496439
Query: 1034 aattttgcccaaattattgaggccgatgaagttctgctgttcgagagagc 1083
|||||||| ||||||||||||| |||||||| || || || ||||||||
Sbjct: 54496438 aattttgctgaaattattgaggctgatgaagtgcttctatttgagagagc 54496389
Score = 95.6 bits (48), Expect = 8e-17
Identities = 84/96 (87%)
Strand = Plus / Minus
Query: 874 gatttttaaagagcgagaggaagacctgaggcgtttgtctcgccctctcgagtgcgcctg 933
|||||||||||| ||||| ||||| |||||||||||||||||||| | || ||| | ||
Sbjct: 54163190 gatttttaaagaacgagaagaagatctgaggcgtttgtctcgcccattggaatgctcttg 54163131
Query: 934 tttccgaacatccatctgggatgaaacgctctacaa 969
||||||||||| |||||||||||||| ||||||||
Sbjct: 54163130 cttccgaacatctatctgggatgaaactctctacaa 54163095
Score = 95.6 bits (48), Expect = 8e-17
Identities = 84/96 (87%)
Strand = Plus / Minus
Query: 874 gatttttaaagagcgagaggaagacctgaggcgtttgtctcgccctctcgagtgcgcctg 933
|||||||||||| ||||| ||||| |||||||||||||||||||| | || ||| | ||
Sbjct: 54499237 gatttttaaagaacgagaagaagatctgaggcgtttgtctcgcccattggaatgctcttg 54499178
Query: 934 tttccgaacatccatctgggatgaaacgctctacaa 969
||||||||||| |||||||||||||| ||||||||
Sbjct: 54499177 cttccgaacatctatctgggatgaaactctctacaa 54499142
Score = 87.7 bits (44), Expect = 2e-14
Identities = 80/92 (86%)
Strand = Plus / Minus
Query: 1202 ttccagagcatggaggttaggaattctaacttcgctgctttcatcgacgtcttcacatca 1261
|||||||||||||| || ||||| |||||||| ||||||||||| ||| |||| |||||
Sbjct: 54156537 ttccagagcatggaagtcaggaactctaactttgctgctttcattgacatctttacatcc 54156478
Query: 1262 aacacctacgtgatggtggttatgtctgatcc 1293
||||| || |||||||| || |||||||||||
Sbjct: 54156477 aacacttatgtgatggtcgtgatgtctgatcc 54156446
Score = 87.7 bits (44), Expect = 2e-14
Identities = 80/92 (86%)
Strand = Plus / Minus
Query: 1202 ttccagagcatggaggttaggaattctaacttcgctgctttcatcgacgtcttcacatca 1261
|||||||||||||| || ||||| |||||||| ||||||||||| ||| |||| |||||
Sbjct: 54492584 ttccagagcatggaagtcaggaactctaactttgctgctttcattgacatctttacatcc 54492525
Query: 1262 aacacctacgtgatggtggttatgtctgatcc 1293
||||| || |||||||| || |||||||||||
Sbjct: 54492524 aacacttatgtgatggtcgtgatgtctgatcc 54492493
Score = 83.8 bits (42), Expect = 3e-13
Identities = 63/70 (90%)
Strand = Plus / Plus
Query: 483 aggtgctgttgatggggaagagcgggtcggggaagaccagcatgaggtcgattatctttg 542
|||| ||||||||||| || || ||||| || ||||||||||||||||| ||||||||||
Sbjct: 54225951 aggtactgttgatgggtaaaagtgggtctggtaagaccagcatgaggtctattatctttg 54226010
Query: 543 caaattatat 552
||||||||||
Sbjct: 54226011 caaattatat 54226020
Score = 83.8 bits (42), Expect = 3e-13
Identities = 63/70 (90%)
Strand = Plus / Plus
Query: 483 aggtgctgttgatggggaagagcgggtcggggaagaccagcatgaggtcgattatctttg 542
|||| ||||||||||| || || ||||| || ||||||||||||||||| ||||||||||
Sbjct: 54560676 aggtactgttgatgggtaaaagtgggtctggtaagaccagcatgaggtctattatctttg 54560735
Query: 543 caaattatat 552
||||||||||
Sbjct: 54560736 caaattatat 54560745
Score = 69.9 bits (35), Expect = 5e-09
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 1302 cttctgcagctacactgatcaacattcgcaatgccaggaaacactttgagaagctggaga 1361
|||| ||||| || |||||||| || |||||||||||||| |||||||| |||||||| |
Sbjct: 54155412 cttccgcagccactctgatcaatatccgcaatgccaggaagcactttgaaaagctggaaa 54155353
Query: 1362 gagtgga 1368
|||||||
Sbjct: 54155352 gagtgga 54155346
Score = 69.9 bits (35), Expect = 5e-09
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 1302 cttctgcagctacactgatcaacattcgcaatgccaggaaacactttgagaagctggaga 1361
|||| ||||| || |||||||| || |||||||||||||| |||||||| |||||||| |
Sbjct: 54491459 cttccgcagccactctgatcaatatccgcaatgccaggaagcactttgaaaagctggaaa 54491400
Query: 1362 gagtgga 1368
|||||||
Sbjct: 54491399 gagtgga 54491393
Score = 65.9 bits (33), Expect = 7e-08
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 1109 cagtgcaaagagcagcgcgatgtccatcggttcgagaagatcagcaatattattaagcag 1168
||||| ||||| ||||| |||| ||| |||| ||||| |||||||| |||||||||||
Sbjct: 54158278 cagtgtaaagaacagcgtgatgcccacaggtttgagaaaatcagcaacattattaagcaa 54158219
Query: 1169 ttcaagctgagctgcag 1185
|| ||||||||||||||
Sbjct: 54158218 tttaagctgagctgcag 54158202
Score = 65.9 bits (33), Expect = 7e-08
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 1109 cagtgcaaagagcagcgcgatgtccatcggttcgagaagatcagcaatattattaagcag 1168
||||| ||||| ||||| |||| ||| |||| ||||| |||||||| |||||||||||
Sbjct: 54494325 cagtgtaaagaacagcgtgatgcccacaggtttgagaaaatcagcaacattattaagcaa 54494266
Query: 1169 ttcaagctgagctgcag 1185
|| ||||||||||||||
Sbjct: 54494265 tttaagctgagctgcag 54494249
>Sscrofa_Chr09
|| Length = 153670197
Score = 61.9 bits (31), Expect = 1e-06
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 1735 tgcaaagatggaatgttattttatcagcaaggtattaaaatgc 1777
||||||||||||||| |||||||| |||||||| |||||||||
Sbjct: 83366191 tgcaaagatggaatgatattttatgagcaaggttttaaaatgc 83366233
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 52,241,796
Number of extensions: 482
Number of successful extensions: 482
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 479
Number of HSP's successfully gapped: 18
Length of query: 1847
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1825
Effective length of database: 2,808,408,574
Effective search space: 5125345647550
Effective search space used: 5125345647550
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)