Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012635
(2366 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001159956.1| mast/stem cell growth factor receptor [Bos t... 1045 0.0
Alignment gi|NP_001068871.2| macrophage colony-stimulating factor 1 recep... 454 e-127
Alignment gi|NP_001179274.1| alpha-type platelet-derived growth factor re... 366 e-101
Alignment gi|XP_002688301.1| PREDICTED: platelet-derived growth factor re... 366 e-101
Alignment gi|NP_001069364.2| beta-type platelet-derived growth factor rec... 340 3e-93
Alignment gi|XP_002689337.1| PREDICTED: platelet-derived growth factor re... 340 3e-93
Alignment gi|XP_001790034.1| PREDICTED: platelet-derived growth factor re... 340 3e-93
Alignment gi|XP_002691902.1| PREDICTED: fms-related tyrosine kinase 3-lik... 323 6e-88
Alignment gi|XP_590263.4| PREDICTED: fms-related tyrosine kinase 3-like [... 323 6e-88
Alignment gi|NP_001178061.2| vascular endothelial growth factor receptor ... 259 1e-68
>ref|NP_001159956.1| mast/stem cell growth factor receptor [Bos taurus].
Length = 977
Score = 1045 bits (2702), Expect = 0.0
Identities = 524/597 (87%), Positives = 531/597 (88%), Gaps = 45/597 (7%)
Frame = +2
Query: 2 LTRLKGTEGGTYTFLVSNADVNSSVTLNVYVNTKPEILTHDRLMNGMLQCVAAGFPEPTI 181
LTRLKGTEGGTYTF VSN+DVNSSVT NVYVNTKPEILTHDRL+NGMLQCVAAGFPEPTI
Sbjct: 380 LTRLKGTEGGTYTFHVSNSDVNSSVTFNVYVNTKPEILTHDRLVNGMLQCVAAGFPEPTI 439
Query: 182 DWYFCPGTEQRCSVPVGPVDVQIQNSSVSPFGKLVIHSSIDYSAFKHNGTVECRAYNDVG 361
DWYFCPGTEQRCSVPVGPVDVQIQNSSVSPFGKLV++S+ID S FKHNGTVECRAYNDVG
Sbjct: 440 DWYFCPGTEQRCSVPVGPVDVQIQNSSVSPFGKLVVYSTIDDSTFKHNGTVECRAYNDVG 499
Query: 362 KSSAFFNFAFK----EQIHAHTLFTPLLIGFVIAAGMMCIIVMILTYKYLQKPMYEVQWK 529
KSSA FNFAFK EQIHAHTLFTPLLIGFVIAAG+MCI VMILTYKYLQKPMYEVQWK
Sbjct: 500 KSSASFNFAFKGNSKEQIHAHTLFTPLLIGFVIAAGLMCIFVMILTYKYLQKPMYEVQWK 559
Query: 530 VVEEINGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAM 709
VVEEINGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAM
Sbjct: 560 VVEEINGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAM 619
Query: 710 TVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDL 889
TVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDL
Sbjct: 620 TVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDL 679
Query: 890 LNFLRRKRDSFICSKQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADK 1069
LNFLRRKRDSFICSKQEDHAE ALYKNLLHSKESSC+DSTNEYMDMKPGVSYVVPTKADK
Sbjct: 680 LNFLRRKRDSFICSKQEDHAEVALYKNLLHSKESSCNDSTNEYMDMKPGVSYVVPTKADK 739
Query: 1070 RRSARIGSYIERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASK------------ 1213
RRSARIGSYIERDVTPAIM SFSYQVAKGMAFLASK
Sbjct: 740 RRSARIGSYIERDVTPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNI 799
Query: 1214 -----------------------------NARLPVKWMAPESIFNCVYTFESDVWSYGIF 1306
NARLPVKWMAPESIFNCVYTFESDVWSYGIF
Sbjct: 800 LLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIF 859
Query: 1307 LWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLKRPTFK 1486
LWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAP EMYDIMKTCWDADPLKRPTFK
Sbjct: 860 LWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFK 919
Query: 1487 QIVQLIEKQISESTNHIYSNLANCSPHRENPAVDHSVRINSVGSSASSTQPLLVHED 1657
QIVQLIEKQISESTNHIYSNLANCSPHRENPAVDHSVRINSVGSSASSTQPLLVHED
Sbjct: 920 QIVQLIEKQISESTNHIYSNLANCSPHRENPAVDHSVRINSVGSSASSTQPLLVHED 976
>ref|NP_001068871.2| macrophage colony-stimulating factor 1 receptor [Bos taurus].
Length = 964
Score = 454 bits (1167), Expect = e-127
Identities = 260/607 (42%), Positives = 344/607 (56%), Gaps = 59/607 (9%)
Frame = +2
Query: 2 LTRLKGTEGGTYTFLVSNADVNSSVTLNVYVNTKPEILTHDRLMNGM--LQCVAAGFPEP 175
L RLK +E G Y+F NA ++T + + PE+ L +G L C A+G+P+P
Sbjct: 366 LPRLKPSEAGLYSFQARNARGEDTLTFELTLLYPPEVEVMWTLSSGSKALLCEASGYPQP 425
Query: 176 TIDWYFCPGTEQRCSVPVGPVDVQIQNSSV---SPFGKLVIHSSIDYSAFKHNGTVECRA 346
+ W C RC + ++ N V PF K+ + S + +HN T ECRA
Sbjct: 426 NVTWVQCSSHTNRCD-KTHVLVLEEPNPDVLRQEPFHKVTVQSLLTPGTLEHNRTYECRA 484
Query: 347 YNDVGKSSAFF---NFAFKEQIHAHTLFTPLLIGFVIAAGMMCIIVMILTYKYLQKPMYE 517
N +G +S + Q LFTP+L+ + ++ +++++L YKY QKP YE
Sbjct: 485 QNSMGNTSGALGPISVGASMQPRDEPLFTPVLVACMSIMALLLLLLLLLFYKYKQKPKYE 544
Query: 518 VQWKVVEEINGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKS 697
V+WK++E GN+Y +IDPTQLPY+ KWEFPRN L FGKTLGAGAFGKVVEATA+GL K
Sbjct: 545 VRWKIIESYEGNSYTFIDPTQLPYNEKWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKE 604
Query: 698 DAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCC 877
DA + VAVKMLK +AH E+EALMSELK++S+LG H NIVNLLGACT GGP LVITEYCC
Sbjct: 605 DAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEYCC 664
Query: 878 YGDLLNFLRRKRDSFI---CSKQEDHAEAALYKNLLHSKESSCSDS------TNEYMDMK 1030
YGDLLNFLRRK ++ + S +D YKN+ K+ DS + Y++M+
Sbjct: 665 YGDLLNFLRRKAEAMLGPSLSPGQDPEAGTGYKNIHLEKKYIRRDSGFSSQGVDTYVEMR 724
Query: 1031 PGVSYVVPTKADKRRSARIGSYIERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLAS 1210
P V T S+ S+ E+D+ FS QVA+GMAFLAS
Sbjct: 725 P-----VST------SSSNDSFSEQDLD----KEDGRPLELRDLLHFSSQVAQGMAFLAS 769
Query: 1211 K-----------------------------------------NARLPVKWMAPESIFNCV 1267
K NARLPVKWMAPESIF+CV
Sbjct: 770 KNCIHRDVAARNVLLTSGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCV 829
Query: 1268 YTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKT 1447
YT +SDVWSYGI LWE+FSLG +PYPG+ V+SKFYK++K+G++M P AP +Y IM+
Sbjct: 830 YTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKFYKLVKDGYQMAQPAFAPENIYSIMQA 889
Query: 1448 CWDADPLKRPTFKQIVQLIEKQIS-ESTNHIYSNLANCSPHRENPAVDHSVRINSVGSSA 1624
CW +P +RPTF+QI L+++Q+ + YSNL + P + S +
Sbjct: 890 CWALEPTRRPTFQQICSLLQEQVQVDRREQDYSNLPSSGSSSSEPEEESSSEHLTCCEQG 949
Query: 1625 SSTQPLL 1645
QPLL
Sbjct: 950 DIAQPLL 956
>ref|NP_001179274.1| alpha-type platelet-derived growth factor receptor [Bos taurus].
Length = 1089
Score = 366 bits (940), Expect = e-101
Identities = 224/601 (37%), Positives = 313/601 (52%), Gaps = 73/601 (12%)
Frame = +2
Query: 2 LTRLKGTEGGTYTFLVSNADVNSSVTLNVYVNTKPEILT-----HDRLMNGMLQCVAAGF 166
L R K + G YT +V N D S T + IL H ++C A G
Sbjct: 381 LIRAKEEDSGHYTIVVQNEDDVKSYTFELLTQVPSSILDLVDDHHGSNGGQTVRCTAEGT 440
Query: 167 PEPTIDWYFCPGTEQ---RCSVPVGPVDVQIQNSSVSPFGKLVIHSSIDYSAFKHNGTVE 337
P P I+W C ++ S V +V + V P + + + ++ + V
Sbjct: 441 PLPDIEWMVCKDIKKCNNETSWTVLANNVSNIITGVHPRDRSTVEGQVTFAKVEETIAVR 500
Query: 338 CRAYNDVGKSSAFFNFAFKEQIHAHTLFTPLLIGFVIAAGMMCIIVMILTYKYLQKPMYE 517
C A N +G S T+ +L+ VI ++ +IV+++ +K QKP YE
Sbjct: 501 CLAKNLLGVESRELKLVAPTLRSELTVAAAVLVLLVIV--IISLIVLVVIWK--QKPRYE 556
Query: 518 VQWKVVEEIN--GNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLI 691
++W+V+E I+ G+ Y+Y+DP QLPYD +WEFPR+ L G+ LG+GAFGKVVE TAYGL
Sbjct: 557 IRWRVIESISPDGHEYIYVDPMQLPYDSRWEFPRDGLVLGRILGSGAFGKVVEGTAYGLS 616
Query: 692 KSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEY 871
+S M VAVKMLKP+A +E++ALMSELK++++LG H+NIVNLLGACT GP +ITEY
Sbjct: 617 RSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKSGPIYIITEY 676
Query: 872 CCYGDLLNFLRRKRDSFICSKQEDHAEAALYKNLLHSKESSCS------DSTNEYMDMKP 1033
C YGDL+N+L + RDSF+ E + L + ES+ S ++ +YMDMK
Sbjct: 677 CFYGDLVNYLHKNRDSFLSHHPEKPKKELDIFGLNPADESTRSYVILSFENNGDYMDMKQ 736
Query: 1034 G----------------VSYVVPTKADKRRSARIGSYIERDVTPAIMXXXXXXXXXXXXX 1165
S + D+ S + S ++ +V +
Sbjct: 737 ADTTQYVPMLERKEVSKYSDIQRALYDRPASYKKKSMLDSEVKNLLSDDNSEGLTLLDLL 796
Query: 1166 SFSYQVAKGMAFLASKN-------AR---------------------------------- 1222
SF+YQVA+GM FLASKN AR
Sbjct: 797 SFTYQVARGMEFLASKNCVHRDLAARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGSTF 856
Query: 1223 LPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRML 1402
LPVKWMAPESIF+ +YT SDVWSYGI LWE+FSLG +PYPGM VDS FY IK G+RM
Sbjct: 857 LPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMMVDSTFYNKIKSGYRMA 916
Query: 1403 SPEHAPVEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISESTNHIYSNLANCSPHRENPA 1582
P+HA E+Y+IM CW+++P KRP+F + +++E + Y + ++PA
Sbjct: 917 KPDHATSEVYEIMVKCWNSEPEKRPSFYHLSEIVENLLPGQYKKSYEKIHLDFLKSDHPA 976
Query: 1583 V 1585
V
Sbjct: 977 V 977
>ref|XP_002688301.1| PREDICTED: platelet-derived growth factor receptor, alpha polypeptide
[Bos taurus].
Length = 1089
Score = 366 bits (940), Expect = e-101
Identities = 224/601 (37%), Positives = 313/601 (52%), Gaps = 73/601 (12%)
Frame = +2
Query: 2 LTRLKGTEGGTYTFLVSNADVNSSVTLNVYVNTKPEILT-----HDRLMNGMLQCVAAGF 166
L R K + G YT +V N D S T + IL H ++C A G
Sbjct: 381 LIRAKEEDSGHYTIVVQNEDDVKSYTFELLTQVPSSILDLVDDHHGSNGGQTVRCTAEGT 440
Query: 167 PEPTIDWYFCPGTEQ---RCSVPVGPVDVQIQNSSVSPFGKLVIHSSIDYSAFKHNGTVE 337
P P I+W C ++ S V +V + V P + + + ++ + V
Sbjct: 441 PLPDIEWMVCKDIKKCNNETSWTVLANNVSNIITGVHPRDRSTVEGQVTFAKVEETIAVR 500
Query: 338 CRAYNDVGKSSAFFNFAFKEQIHAHTLFTPLLIGFVIAAGMMCIIVMILTYKYLQKPMYE 517
C A N +G S T+ +L+ VI ++ +IV+++ +K QKP YE
Sbjct: 501 CLAKNLLGVESRELKLVAPTLRSELTVAAAVLVLLVIV--IISLIVLVVIWK--QKPRYE 556
Query: 518 VQWKVVEEIN--GNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLI 691
++W+V+E I+ G+ Y+Y+DP QLPYD +WEFPR+ L G+ LG+GAFGKVVE TAYGL
Sbjct: 557 IRWRVIESISPDGHEYIYVDPMQLPYDSRWEFPRDGLVLGRILGSGAFGKVVEGTAYGLS 616
Query: 692 KSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEY 871
+S M VAVKMLKP+A +E++ALMSELK++++LG H+NIVNLLGACT GP +ITEY
Sbjct: 617 RSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKSGPIYIITEY 676
Query: 872 CCYGDLLNFLRRKRDSFICSKQEDHAEAALYKNLLHSKESSCS------DSTNEYMDMKP 1033
C YGDL+N+L + RDSF+ E + L + ES+ S ++ +YMDMK
Sbjct: 677 CFYGDLVNYLHKNRDSFLSHHPEKPKKELDIFGLNPADESTRSYVILSFENNGDYMDMKQ 736
Query: 1034 G----------------VSYVVPTKADKRRSARIGSYIERDVTPAIMXXXXXXXXXXXXX 1165
S + D+ S + S ++ +V +
Sbjct: 737 ADTTQYVPMLERKEVSKYSDIQRALYDRPASYKKKSMLDSEVKNLLSDDNSEGLTLLDLL 796
Query: 1166 SFSYQVAKGMAFLASKN-------AR---------------------------------- 1222
SF+YQVA+GM FLASKN AR
Sbjct: 797 SFTYQVARGMEFLASKNCVHRDLAARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGSTF 856
Query: 1223 LPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRML 1402
LPVKWMAPESIF+ +YT SDVWSYGI LWE+FSLG +PYPGM VDS FY IK G+RM
Sbjct: 857 LPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMMVDSTFYNKIKSGYRMA 916
Query: 1403 SPEHAPVEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISESTNHIYSNLANCSPHRENPA 1582
P+HA E+Y+IM CW+++P KRP+F + +++E + Y + ++PA
Sbjct: 917 KPDHATSEVYEIMVKCWNSEPEKRPSFYHLSEIVENLLPGQYKKSYEKIHLDFLKSDHPA 976
Query: 1583 V 1585
V
Sbjct: 977 V 977
>ref|NP_001069364.2| beta-type platelet-derived growth factor receptor [Bos taurus].
Length = 1103
Score = 340 bits (872), Expect = 3e-93
Identities = 220/611 (36%), Positives = 317/611 (51%), Gaps = 83/611 (13%)
Frame = +2
Query: 2 LTRLKGTEGGTYTFLVSNADVNSSVTLNVYVNTKPEIL----THDRLMNGMLQCVAAGFP 169
L R+K E G YT + D + ++ + VN +L +H ++C G P
Sbjct: 382 LVRVKVAEAGYYTMRAFHEDAEAQLSFQLQVNVPVRVLELSESHPANGEQTVRCRGRGMP 441
Query: 170 EPTIDWYFCPGTEQRCSVPVGPVDVQIQNSSVSPFGKLVIH----------SSIDYSAFK 319
+P + W C + RC + P + + S V + S++
Sbjct: 442 QPHLTWSTCSDLK-RCPRELPPTPLGNSSEEESQLETNVTYWAEEQEFEVVSTLRLRHVD 500
Query: 320 HNGTVECRAYNDVGKSSAFFNFAFKEQIHAHTL-FTPLLIGFVIAAGMMCII-VMILTYK 493
+V C +N +G + + H+L F ++I ++A ++ II ++IL
Sbjct: 501 QPLSVRCTLHNLLGYDVQ------EVTVVPHSLPFKVVVISAILALVVLTIISLIILIML 554
Query: 494 YLQKPMYEVQWKVVEEIN--GNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVV 667
+ +KP YE++WKV+E ++ G+ Y+Y+DP QLPYD WE PR++L G+TLG+GAFG+VV
Sbjct: 555 WQKKPRYEIRWKVIESVSSDGHEYIYVDPMQLPYDSTWELPRDQLVLGRTLGSGAFGQVV 614
Query: 668 EATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGG 847
EATA+GL S A M VAVKMLK +A +E++ALMSELK++S+LG H+N+VNLLGACT GG
Sbjct: 615 EATAHGLSHSQATMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNVVNLLGACTKGG 674
Query: 848 PTLVITEYCCYGDLLNFLRRKRDSFI--CSKQEDHAEAALYKNL------LHSKESSCSD 1003
P +ITEYC YGDL+++L R + +F+ CS + A LY N L S S +
Sbjct: 675 PIYIITEYCRYGDLVDYLHRNKHTFLQRCSDKRRPPSAELYSNALPVGLPLPSHVSLPGE 734
Query: 1004 STNEYMDMK--PGVSYV--VPTKADKRRS--------ARIGSYI----ERDVTPAIMXXX 1135
S YMDM V YV + K D + + A +Y+ ER ++
Sbjct: 735 SDGGYMDMSKDESVDYVPMLDMKGDVKYADIESSNYMAPYDNYVPSAPERTCRVTLI-NE 793
Query: 1136 XXXXXXXXXXSFSYQVAKGMAFLASKN-------AR------------------------ 1222
FSYQVA GM FLASKN AR
Sbjct: 794 SPVLSYTDLVGFSYQVANGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMRD 853
Query: 1223 ----------LPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFY 1372
LP+KWMAPESIFN +YT SDVWS+GI LWE+F+LG +PYP +P++ +FY
Sbjct: 854 SNYISKGSTFLPLKWMAPESIFNSLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNEQFY 913
Query: 1373 KMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISESTNHIYSNLA 1552
IK G+RM P HA E+Y+IM+ CW+ RP F Q+V L+E+ + E Y +
Sbjct: 914 NAIKRGYRMAQPAHASDEIYEIMQKCWEEKFEIRPPFSQLVLLLERLLGEGYKKKYQQVD 973
Query: 1553 NCSPHRENPAV 1585
++PA+
Sbjct: 974 EEFLRSDHPAI 984
>ref|XP_002689337.1| PREDICTED: platelet-derived growth factor receptor, beta polypeptide
[Bos taurus].
Length = 1103
Score = 340 bits (872), Expect = 3e-93
Identities = 220/611 (36%), Positives = 317/611 (51%), Gaps = 83/611 (13%)
Frame = +2
Query: 2 LTRLKGTEGGTYTFLVSNADVNSSVTLNVYVNTKPEIL----THDRLMNGMLQCVAAGFP 169
L R+K E G YT + D + ++ + VN +L +H ++C G P
Sbjct: 382 LVRVKVAEAGYYTMRAFHEDAEAQLSFQLQVNVPVRVLELSESHPANGEQTVRCRGRGMP 441
Query: 170 EPTIDWYFCPGTEQRCSVPVGPVDVQIQNSSVSPFGKLVIH----------SSIDYSAFK 319
+P + W C + RC + P + + S V + S++
Sbjct: 442 QPHLTWSTCSDLK-RCPRELPPTPLGNSSEEESQLETNVTYWAEEQEFEVVSTLRLRHVD 500
Query: 320 HNGTVECRAYNDVGKSSAFFNFAFKEQIHAHTL-FTPLLIGFVIAAGMMCII-VMILTYK 493
+V C +N +G + + H+L F ++I ++A ++ II ++IL
Sbjct: 501 QPLSVRCTLHNLLGYDVQ------EVTVVPHSLPFKVVVISAILALVVLTIISLIILIML 554
Query: 494 YLQKPMYEVQWKVVEEIN--GNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVV 667
+ +KP YE++WKV+E ++ G+ Y+Y+DP QLPYD WE PR++L G+TLG+GAFG+VV
Sbjct: 555 WQKKPRYEIRWKVIESVSSDGHEYIYVDPMQLPYDSTWELPRDQLVLGRTLGSGAFGQVV 614
Query: 668 EATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGG 847
EATA+GL S A M VAVKMLK +A +E++ALMSELK++S+LG H+N+VNLLGACT GG
Sbjct: 615 EATAHGLSHSQATMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNVVNLLGACTKGG 674
Query: 848 PTLVITEYCCYGDLLNFLRRKRDSFI--CSKQEDHAEAALYKNL------LHSKESSCSD 1003
P +ITEYC YGDL+++L R + +F+ CS + A LY N L S S +
Sbjct: 675 PIYIITEYCRYGDLVDYLHRNKHTFLQRCSDKRRPPSAELYSNALPVGLPLPSHVSLPGE 734
Query: 1004 STNEYMDMK--PGVSYV--VPTKADKRRS--------ARIGSYI----ERDVTPAIMXXX 1135
S YMDM V YV + K D + + A +Y+ ER ++
Sbjct: 735 SDGGYMDMSKDESVDYVPMLDMKGDVKYADIESSNYMAPYDNYVPSAPERTCRVTLI-NE 793
Query: 1136 XXXXXXXXXXSFSYQVAKGMAFLASKN-------AR------------------------ 1222
FSYQVA GM FLASKN AR
Sbjct: 794 SPVLSYTDLVGFSYQVANGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMRD 853
Query: 1223 ----------LPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFY 1372
LP+KWMAPESIFN +YT SDVWS+GI LWE+F+LG +PYP +P++ +FY
Sbjct: 854 SNYISKGSTFLPLKWMAPESIFNSLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNEQFY 913
Query: 1373 KMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISESTNHIYSNLA 1552
IK G+RM P HA E+Y+IM+ CW+ RP F Q+V L+E+ + E Y +
Sbjct: 914 NAIKRGYRMAQPAHASDEIYEIMQKCWEEKFEIRPPFSQLVLLLERLLGEGYKKKYQQVD 973
Query: 1553 NCSPHRENPAV 1585
++PA+
Sbjct: 974 EEFLRSDHPAI 984
>ref|XP_001790034.1| PREDICTED: platelet-derived growth factor receptor beta [Bos taurus].
Length = 1103
Score = 340 bits (872), Expect = 3e-93
Identities = 220/611 (36%), Positives = 317/611 (51%), Gaps = 83/611 (13%)
Frame = +2
Query: 2 LTRLKGTEGGTYTFLVSNADVNSSVTLNVYVNTKPEIL----THDRLMNGMLQCVAAGFP 169
L R+K E G YT + D + ++ + VN +L +H ++C G P
Sbjct: 382 LVRVKVAEAGYYTMRAFHEDAEAQLSFQLQVNVPVRVLELSESHPANGEQTVRCRGRGMP 441
Query: 170 EPTIDWYFCPGTEQRCSVPVGPVDVQIQNSSVSPFGKLVIH----------SSIDYSAFK 319
+P + W C + RC + P + + S V + S++
Sbjct: 442 QPHLTWSTCSDLK-RCPRELPPTPLGNSSEEESQLETNVTYWAEEQEFEVVSTLRLRHVD 500
Query: 320 HNGTVECRAYNDVGKSSAFFNFAFKEQIHAHTL-FTPLLIGFVIAAGMMCII-VMILTYK 493
+V C +N +G + + H+L F ++I ++A ++ II ++IL
Sbjct: 501 QPLSVRCTLHNLLGYDVQ------EVTVVPHSLPFKVVVISAILALVVLTIISLIILIML 554
Query: 494 YLQKPMYEVQWKVVEEIN--GNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVV 667
+ +KP YE++WKV+E ++ G+ Y+Y+DP QLPYD WE PR++L G+TLG+GAFG+VV
Sbjct: 555 WQKKPRYEIRWKVIESVSSDGHEYIYVDPMQLPYDSTWELPRDQLVLGRTLGSGAFGQVV 614
Query: 668 EATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGG 847
EATA+GL S A M VAVKMLK +A +E++ALMSELK++S+LG H+N+VNLLGACT GG
Sbjct: 615 EATAHGLSHSQATMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNVVNLLGACTKGG 674
Query: 848 PTLVITEYCCYGDLLNFLRRKRDSFI--CSKQEDHAEAALYKNL------LHSKESSCSD 1003
P +ITEYC YGDL+++L R + +F+ CS + A LY N L S S +
Sbjct: 675 PIYIITEYCRYGDLVDYLHRNKHTFLQRCSDKRRPPSAELYSNALPVGLPLPSHVSLPGE 734
Query: 1004 STNEYMDMK--PGVSYV--VPTKADKRRS--------ARIGSYI----ERDVTPAIMXXX 1135
S YMDM V YV + K D + + A +Y+ ER ++
Sbjct: 735 SDGGYMDMSKDESVDYVPMLDMKGDVKYADIESSNYMAPYDNYVPSAPERTCRVTLI-NE 793
Query: 1136 XXXXXXXXXXSFSYQVAKGMAFLASKN-------AR------------------------ 1222
FSYQVA GM FLASKN AR
Sbjct: 794 SPVLSYTDLVGFSYQVANGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMRD 853
Query: 1223 ----------LPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFY 1372
LP+KWMAPESIFN +YT SDVWS+GI LWE+F+LG +PYP +P++ +FY
Sbjct: 854 SNYISKGSTFLPLKWMAPESIFNSLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNEQFY 913
Query: 1373 KMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISESTNHIYSNLA 1552
IK G+RM P HA E+Y+IM+ CW+ RP F Q+V L+E+ + E Y +
Sbjct: 914 NAIKRGYRMAQPAHASDEIYEIMQKCWEEKFEIRPPFSQLVLLLERLLGEGYKKKYQQVD 973
Query: 1553 NCSPHRENPAV 1585
++PA+
Sbjct: 974 EEFLRSDHPAI 984
>ref|XP_002691902.1| PREDICTED: fms-related tyrosine kinase 3-like, partial [Bos taurus].
Length = 978
Score = 323 bits (827), Expect = 6e-88
Identities = 197/559 (35%), Positives = 282/559 (50%), Gaps = 52/559 (9%)
Frame = +2
Query: 29 GTYTFLVSNADVNSSVTLNVYVNTKPEILTHDRLMNGMLQCVAAGFPEPTIDWYFCPGTE 208
G Y F N D + + + KP++L C + G+P P+ W C
Sbjct: 399 GQYIFHAENDDAQFTKEFTLNIRRKPQVLAEASASQA--SCSSDGYPIPSWTWKKCSDKS 456
Query: 209 QRCSVPVGPVDVQIQNSSVSPFGKLVIHSSIDYSAFKHNGTVECRAYNDVGKSSAFFNFA 388
C+ + + + ++ FG+ + S+++ S V+C AYN +G S +
Sbjct: 457 PNCTEEITE-GIWNKKANRKVFGQWISSSTLNMSEAVKGFLVKCCAYNALGTSCETILLS 515
Query: 389 FKEQIHAHTLFTPLLIGFVIAAGMMCIIVMILTYKYLQKPMYEVQWKVVEEING--NNYV 562
+ + + ++ M++ +KY ++ YE Q ++V+ N Y+
Sbjct: 516 SPGPFPSIQDNISFYATIGLCLPFIAVLTMLICHKYKKQFRYESQLQMVQVTGSLDNEYL 575
Query: 563 YIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSA 742
YID + YD KWEFPR L FGK LG+GAFGKV+ ATAYG+ K+ ++ VAVKMLK A
Sbjct: 576 YIDFREYEYDLKWEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKA 635
Query: 743 HLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSF 922
+EREALMSELK++++LG+H NIVNLLGACT+ GP +I EYCCYGDLLN+LR KR+ F
Sbjct: 636 DSSEREALMSELKMMTHLGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKF 695
Query: 923 ICSKQEDHAE--AALYKNLLHSKESSC--SDSTNEYMDMKP-----GVSYVVPTKADKRR 1075
+ E E + Y SS S + D P G S+ + +
Sbjct: 696 HRTWTEIFKEHNFSFYPTFQSHPNSSMPGSREVQIHPDSDPISGFNGNSFQSEDEIEYEN 755
Query: 1076 SARIGSYIERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASK-------------- 1213
R+ E D+ F+YQVAKGM FL K
Sbjct: 756 QKRLEE--EEDLN---------VLTFEDLLCFAYQVAKGMEFLEFKSCLHRDLAARNVLV 804
Query: 1214 ---------------------------NARLPVKWMAPESIFNCVYTFESDVWSYGIFLW 1312
NARLPVKWMAPES+F +YT +SDVWSYGI LW
Sbjct: 805 THGKVAKIADFGLARDIMSDSNYVIRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLW 864
Query: 1313 ELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLKRPTFKQI 1492
E+FSLG +PYPG+P D+ FYK+I+ GF+M P +A E+Y IM++CW D KRP+F +
Sbjct: 865 EIFSLGVNPYPGIPADANFYKLIQSGFKMDQPFYATEEIYFIMQSCWAFDSRKRPSFPNL 924
Query: 1493 VQLIEKQISESTNHIYSNL 1549
+ Q++++ +Y N+
Sbjct: 925 TSFLGCQLADAEEAMYQNM 943
>ref|XP_590263.4| PREDICTED: fms-related tyrosine kinase 3-like [Bos taurus].
Length = 1077
Score = 323 bits (827), Expect = 6e-88
Identities = 197/559 (35%), Positives = 282/559 (50%), Gaps = 52/559 (9%)
Frame = +2
Query: 29 GTYTFLVSNADVNSSVTLNVYVNTKPEILTHDRLMNGMLQCVAAGFPEPTIDWYFCPGTE 208
G Y F N D + + + KP++L C + G+P P+ W C
Sbjct: 498 GQYIFHAENDDAQFTKEFTLNIRRKPQVLAEASASQA--SCSSDGYPIPSWTWKKCSDKS 555
Query: 209 QRCSVPVGPVDVQIQNSSVSPFGKLVIHSSIDYSAFKHNGTVECRAYNDVGKSSAFFNFA 388
C+ + + + ++ FG+ + S+++ S V+C AYN +G S +
Sbjct: 556 PNCTEEITE-GIWNKKANRKVFGQWISSSTLNMSEAVKGFLVKCCAYNALGTSCETILLS 614
Query: 389 FKEQIHAHTLFTPLLIGFVIAAGMMCIIVMILTYKYLQKPMYEVQWKVVEEING--NNYV 562
+ + + ++ M++ +KY ++ YE Q ++V+ N Y+
Sbjct: 615 SPGPFPSIQDNISFYATIGLCLPFIAVLTMLICHKYKKQFRYESQLQMVQVTGSLDNEYL 674
Query: 563 YIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSA 742
YID + YD KWEFPR L FGK LG+GAFGKV+ ATAYG+ K+ ++ VAVKMLK A
Sbjct: 675 YIDFREYEYDLKWEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKA 734
Query: 743 HLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSF 922
+EREALMSELK++++LG+H NIVNLLGACT+ GP +I EYCCYGDLLN+LR KR+ F
Sbjct: 735 DSSEREALMSELKMMTHLGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKF 794
Query: 923 ICSKQEDHAE--AALYKNLLHSKESSC--SDSTNEYMDMKP-----GVSYVVPTKADKRR 1075
+ E E + Y SS S + D P G S+ + +
Sbjct: 795 HRTWTEIFKEHNFSFYPTFQSHPNSSMPGSREVQIHPDSDPISGFNGNSFQSEDEIEYEN 854
Query: 1076 SARIGSYIERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASK-------------- 1213
R+ E D+ F+YQVAKGM FL K
Sbjct: 855 QKRLEE--EEDLN---------VLTFEDLLCFAYQVAKGMEFLEFKSCLHRDLAARNVLV 903
Query: 1214 ---------------------------NARLPVKWMAPESIFNCVYTFESDVWSYGIFLW 1312
NARLPVKWMAPES+F +YT +SDVWSYGI LW
Sbjct: 904 THGKVAKIADFGLARDIMSDSNYVIRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLW 963
Query: 1313 ELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLKRPTFKQI 1492
E+FSLG +PYPG+P D+ FYK+I+ GF+M P +A E+Y IM++CW D KRP+F +
Sbjct: 964 EIFSLGVNPYPGIPADANFYKLIQSGFKMDQPFYATEEIYFIMQSCWAFDSRKRPSFPNL 1023
Query: 1493 VQLIEKQISESTNHIYSNL 1549
+ Q++++ +Y N+
Sbjct: 1024 TSFLGCQLADAEEAMYQNM 1042
>ref|NP_001178061.2| vascular endothelial growth factor receptor 1 [Bos taurus].
Length = 1337
Score = 259 bits (661), Expect = 1e-68
Identities = 191/575 (33%), Positives = 282/575 (49%), Gaps = 82/575 (14%)
Frame = +2
Query: 32 TYTFLVSNADVNSSVTL-----NVYVNT----KPEILTHDR----LMNGM---------- 142
T+ ++ NA + S T N+Y K E++ D+ L+ +
Sbjct: 619 TFNLVIKNASLEDSGTYACRARNIYTGEEILQKKEVIIRDQEAPYLLRNLSDLTVAISSS 678
Query: 143 --LQCVAAGFPEPTIDWYFCPGT-EQRCSVPVGPVDVQIQNSSVSPFGKLVIHSSIDYSA 313
L C A G PEP I W+ +Q + +GP SS L I + A
Sbjct: 679 TTLDCHANGVPEPQITWFKNNHKIQQEPGIILGP------GSST-----LFIERVTEEDA 727
Query: 314 FKHNGTVECRAYNDVGKSSAFFNFAFKEQIHAHTLFTPLLIGFVIAAGMMCIIVMILTYK 493
G C+A N G + + + + L L +AA + +++ + K
Sbjct: 728 ----GVYHCKASNLKGSAESSAHLTVQGTSDKSNLELITLTCTCVAATLFWLLLTLFIRK 783
Query: 494 YLQKPMYEVQWKVVEEINGNNYVYIDPT--QLPYD-HKWEFPRNRLSFGKTLGAGAFGKV 664
L++ E++ + I + V +D +LPYD KWEF R RL GK+LG GAFGKV
Sbjct: 784 -LKRSSSEIKADYLSIIMDPDEVPLDEQCDRLPYDASKWEFARERLKLGKSLGRGAFGKV 842
Query: 665 VEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACT-I 841
V+A+A+G+ KS TVAVKMLK A +E +ALM+ELK+L+++G+H+N+VNLLGACT
Sbjct: 843 VQASAFGIKKSPTCRTVAVKMLKEGATASEYKALMTELKILTHIGHHLNVVNLLGACTKQ 902
Query: 842 GGPTLVITEYCCYGDLLNFLRRKRDSFICSK--------QEDHAEAAL---YKNLLHSKE 988
GGP +VI EYC YG+L N+L+ KR F +K +++ E L K L S
Sbjct: 903 GGPLMVIVEYCKYGNLSNYLKSKRALFFLNKDAALHVEPKKEKMEPDLEQGEKQRLDSVT 962
Query: 989 SSCSDSTNEYMDMKPGVSYVVPTKADKRRSARIGSYIERDVTPAIMXXXXXXXXXXXXXS 1168
SS S +++ + + K + +D + ++ +T S
Sbjct: 963 SSESFASSGFQEDK--------SLSDVEEEEDFDDFYKQPIT------------MEDLIS 1002
Query: 1169 FSYQVAKGMAFLASK-----------------------------------------NARL 1225
+S+QVA+GM FL+S+ + RL
Sbjct: 1003 YSFQVARGMEFLSSRKCIHRDLAARNILLSENNVVKICDFGLARDIYKNPDYVRKGDTRL 1062
Query: 1226 PVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLS 1405
P+KWMAPESIF+ +Y+ +SDVWSYG+ LWE+FSLG SPYPG+ +D F +K+G RM +
Sbjct: 1063 PLKWMAPESIFDKIYSTKSDVWSYGVLLWEIFSLGGSPYPGVQMDEDFCSRLKDGMRMRA 1122
Query: 1406 PEHAPVEMYDIMKTCWDADPLKRPTFKQIVQLIEK 1510
PE+A E+Y M CW DP +RP F V+L+EK
Sbjct: 1123 PEYATPEIYQTMLDCWHKDPKERPRF---VELVEK 1154
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 91,580,601
Number of extensions: 2483024
Number of successful extensions: 9415
Number of sequences better than 1.0e-05: 154
Number of HSP's gapped: 9059
Number of HSP's successfully gapped: 237
Length of query: 788
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 678
Effective length of database: 14,041,694
Effective search space: 9520268532
Effective search space used: 9520268532
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012635
(2366 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003181.1| mast/stem cell growth factor receptor [Canis... 1025 0.0
Alignment gi|XP_546306.2| PREDICTED: similar to colony stimulating factor... 460 e-129
Alignment gi|XP_532374.2| PREDICTED: similar to Alpha platelet-derived gr... 367 e-101
Alignment gi|NP_001003382.1| beta-type platelet-derived growth factor rec... 344 2e-94
Alignment gi|NP_001018647.1| FL cytokine receptor [Canis lupus familiaris]. 325 9e-89
Alignment gi|XP_534520.2| PREDICTED: similar to Vascular endothelial grow... 268 2e-71
Alignment gi|NP_001003336.1| fibroblast growth factor receptor 2 [Canis l... 227 3e-59
Alignment gi|XP_545926.2| PREDICTED: similar to Fibroblast growth factor ... 224 3e-58
Alignment gi|XP_848780.1| PREDICTED: similar to fibroblast growth factor ... 218 3e-56
Alignment gi|XP_857002.1| PREDICTED: similar to fibroblast growth factor ... 218 3e-56
>ref|NP_001003181.1| mast/stem cell growth factor receptor [Canis lupus familiaris].
Length = 975
Score = 1025 bits (2649), Expect = 0.0
Identities = 508/593 (85%), Positives = 521/593 (87%), Gaps = 41/593 (6%)
Frame = +2
Query: 2 LTRLKGTEGGTYTFLVSNADVNSSVTLNVYVNTKPEILTHDRLMNGMLQCVAAGFPEPTI 181
LTRLKG EGGTYTF VSN+DVNSSVT NVYVNTKPEILTH+ L NGMLQCV AGFPEP +
Sbjct: 382 LTRLKGNEGGTYTFQVSNSDVNSSVTFNVYVNTKPEILTHESLTNGMLQCVVAGFPEPAV 441
Query: 182 DWYFCPGTEQRCSVPVGPVDVQIQNSSVSPFGKLVIHSSIDYSAFKHNGTVECRAYNDVG 361
WYFCPG EQRCSVP+GP+DVQ+QNSS+SP GKLV+ SSIDYSAFKHNGTVECRAYN+VG
Sbjct: 442 GWYFCPGAEQRCSVPIGPMDVQMQNSSLSPSGKLVVQSSIDYSAFKHNGTVECRAYNNVG 501
Query: 362 KSSAFFNFAFKEQIHAHTLFTPLLIGFVIAAGMMCIIVMILTYKYLQKPMYEVQWKVVEE 541
+SSAFFNFAFKEQIH HTLFTPLLIGFVIAAGMMCIIVMILTYKYLQKPMYEVQWKVVEE
Sbjct: 502 RSSAFFNFAFKEQIHPHTLFTPLLIGFVIAAGMMCIIVMILTYKYLQKPMYEVQWKVVEE 561
Query: 542 INGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAV 721
INGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAV
Sbjct: 562 INGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAV 621
Query: 722 KMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFL 901
KMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACT+GGPTLVITEYCCYGDLLNFL
Sbjct: 622 KMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTVGGPTLVITEYCCYGDLLNFL 681
Query: 902 RRKRDSFICSKQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADKRRSA 1081
RRKRDSFICSKQEDH E ALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADKRRSA
Sbjct: 682 RRKRDSFICSKQEDHGEVALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADKRRSA 741
Query: 1082 RIGSYIERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASK---------------- 1213
RIGSYIERDVTPAIM SFSYQVAKGMAFLASK
Sbjct: 742 RIGSYIERDVTPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTH 801
Query: 1214 -------------------------NARLPVKWMAPESIFNCVYTFESDVWSYGIFLWEL 1318
NARLPVKWMAPESIFNCVYTFESDVWSYGIFLWEL
Sbjct: 802 GRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWEL 861
Query: 1319 FSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLKRPTFKQIVQ 1498
FSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAP EMYDIMKTCWDADPLKRPTFKQIVQ
Sbjct: 862 FSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQ 921
Query: 1499 LIEKQISESTNHIYSNLANCSPHRENPAVDHSVRINSVGSSASSTQPLLVHED 1657
LIEKQIS+STNHIYSNLANCSP+ E P VDHSVRINSVGSSASSTQPLLVHED
Sbjct: 922 LIEKQISDSTNHIYSNLANCSPNPERPVVDHSVRINSVGSSASSTQPLLVHED 974
>ref|XP_546306.2| PREDICTED: similar to colony stimulating factor 1 receptor precursor
[Canis familiaris].
Length = 967
Score = 460 bits (1183), Expect = e-129
Identities = 262/581 (45%), Positives = 342/581 (58%), Gaps = 61/581 (10%)
Frame = +2
Query: 2 LTRLKGTEGGTYTFLVSNADVNSSVTLNVYVNTKPEILTHDRLMNGM--LQCVAAGFPEP 175
L RLK +E G Y+FL N S+T + + PE+ +NG L C A+G+P+P
Sbjct: 366 LPRLKPSEAGRYSFLARNTRGGDSLTFELTLLYPPEVRITWTTVNGSDALLCEASGYPQP 425
Query: 176 TIDWYFCPGTEQRCSVPVGPV--DVQIQNSSVSPFGKLVIHSSIDYSAFKHNGTVECRAY 349
+ W C G RC V D + S PF K+++HS + +HN T ECRA
Sbjct: 426 NVTWLQCRGHTDRCDEAQALVLEDSYSEVLSQEPFHKVIVHSLLAMGTMEHNMTYECRAL 485
Query: 350 NDVGKSSAFFNFAFKEQIHAHT------LFTPLLIGFVIAAGMMCIIVMILTYKYLQKPM 511
N VG SS F I AH LFTP+L+ + ++ +++++L YKY QKP
Sbjct: 486 NSVGNSSQAFR---PIPIGAHIQPPDEPLFTPVLVTCMSIMVLLLLLLLLLFYKYKQKPK 542
Query: 512 YEVQWKVVEEINGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLI 691
Y+V+WK++E GN+Y +IDPTQLPY+ KWEFPRN L FGKTLGAGAFGKVVEATA+GL
Sbjct: 543 YQVRWKIIESYEGNSYTFIDPTQLPYNEKWEFPRNNLQFGKTLGAGAFGKVVEATAFGLG 602
Query: 692 KSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEY 871
K DA + VAVKMLK +AH E+EALMSELK++S+LG H NIVNLLGACT GGP LVITEY
Sbjct: 603 KEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEY 662
Query: 872 CCYGDLLNFLRRKRDSFI---CSKQEDHAEAALYKNLLHSKESSCSDS------TNEYMD 1024
CCYGDLLNFLRRK ++ + S +D A YKN+ K+ DS + Y++
Sbjct: 663 CCYGDLLNFLRRKAEAMLGPSVSVGQDPGAGAGYKNIHLEKKYVRRDSGFSSQGVDTYVE 722
Query: 1025 MKPGVSYVVPTKADKRRSARIGSYIERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFL 1204
M+P V T S+ S+ E+D+ FS QVA+GMAFL
Sbjct: 723 MRP-----VST------SSSNDSFSEQDLD----KEDGRPLELRDLLHFSSQVAQGMAFL 767
Query: 1205 ASK-----------------------------------------NARLPVKWMAPESIFN 1261
ASK NARLPVKWMAPESIF+
Sbjct: 768 ASKNCIHRDVAARNVLLTSGRVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFD 827
Query: 1262 CVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIM 1441
CVYT +SDVWSYGI LWE+FSLG +PYPG+ V+SKFYK++K+G++M P AP +Y +M
Sbjct: 828 CVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKFYKLVKDGYQMAQPAFAPKNIYSVM 887
Query: 1442 KTCWDADPLKRPTFKQIVQLIEKQI-SESTNHIYSNLANCS 1561
+ CW +P +RPTF+QI L+++Q ++ Y+NL + S
Sbjct: 888 QACWALEPTRRPTFQQICSLLQEQAQADRREPDYTNLPSSS 928
>ref|XP_532374.2| PREDICTED: similar to Alpha platelet-derived growth factor receptor
precursor (PDGF-R-alpha) (CD140a antigen) [Canis
familiaris].
Length = 1089
Score = 367 bits (941), Expect = e-101
Identities = 226/601 (37%), Positives = 317/601 (52%), Gaps = 73/601 (12%)
Frame = +2
Query: 2 LTRLKGTEGGTYTFLVSNADVNSSVTLNVYVNTKPEILT-----HDRLMNGMLQCVAAGF 166
L R K + G YT +V N D S T + IL H ++C+A G
Sbjct: 381 LIRAKEEDSGHYTIVVQNEDDVKSYTFELLTQVPSSILDLVDDHHGSTGGQTVRCIAEGT 440
Query: 167 PEPTIDWYFCPGTEQ---RCSVPVGPVDVQIQNSSVSPFGKLVIHSSIDYSAFKHNGTVE 337
P P I+W C ++ S + ++ + V P + + + ++ + V
Sbjct: 441 PLPDIEWMICKDIKKCNNETSWAILANNISNIITEVHPRDRSTVEGRVTFTRVEETIAVR 500
Query: 338 CRAYNDVGKSSAFFNFAFKEQIHAHTLFTPLLIGFVIAAGMMCIIVMILTYKYLQKPMYE 517
C A N +G S T+ +L+ VI ++ +IV+++ +K QKP YE
Sbjct: 501 CLAKNLLGAESRELKLVAPTLRSELTVAAAVLVLLVIV--IISLIVLVVIWK--QKPRYE 556
Query: 518 VQWKVVEEIN--GNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLI 691
++W+V+E I+ G+ Y+Y+DP QLPYD +WEFPR+ L G+ LG+GAFGKVVE TAYGL
Sbjct: 557 IRWRVIESISPDGHEYIYVDPMQLPYDSRWEFPRDGLVLGRILGSGAFGKVVEGTAYGLS 616
Query: 692 KSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEY 871
+S M VAVKMLKP+A +E++ALMSELK++++LG H+NIVNLLGACT GP +ITEY
Sbjct: 617 RSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKSGPIYIITEY 676
Query: 872 CCYGDLLNFLRRKRDSFICSKQEDHAEAALYKNLLHSKESSCS------DSTNEYMDMKP 1033
C YGDL+N+L + RDSF+ E + L + +S+ S ++ +YMDMK
Sbjct: 677 CFYGDLVNYLHKNRDSFLSRHPEKPKKELDIFGLNPADDSTRSYVILSFENNGDYMDMKQ 736
Query: 1034 G--VSYV-------VPTKADKRRSA--RIGSY-----IERDVTPAIMXXXXXXXXXXXXX 1165
YV V +D +RS R SY ++ +V +
Sbjct: 737 ADTTQYVPMLERKEVSKYSDIQRSLYDRPASYKKKSMLDSEVKNLLSDDNSEGLTLLDLL 796
Query: 1166 SFSYQVAKGMAFLASKN-------AR---------------------------------- 1222
SF+YQVA+GM FLASKN AR
Sbjct: 797 SFTYQVARGMEFLASKNCVHRDLAARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGSTF 856
Query: 1223 LPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRML 1402
LPVKWMAPESIF+ +YT SDVWSYGI LWE+FSLG +PYPGM VDS FY IK G+RM
Sbjct: 857 LPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMMVDSTFYNKIKSGYRMA 916
Query: 1403 SPEHAPVEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISESTNHIYSNLANCSPHRENPA 1582
P+HA E+Y+IM CW ++P KRP+F + +++E + Y + ++PA
Sbjct: 917 KPDHATSEVYEIMVKCWHSEPEKRPSFYHLSEIVENLLPGQYKKSYEKIHLDFLKSDHPA 976
Query: 1583 V 1585
V
Sbjct: 977 V 977
>ref|NP_001003382.1| beta-type platelet-derived growth factor receptor precursor [Canis
lupus familiaris].
Length = 1103
Score = 344 bits (883), Expect = 2e-94
Identities = 222/615 (36%), Positives = 314/615 (51%), Gaps = 87/615 (14%)
Frame = +2
Query: 2 LTRLKGTEGGTYTFLVSNADVNSSVTLNVYVNTKPEIL----THDRLMNGMLQCVAAGFP 169
L R+K E G YT + D + ++ + VN +L +H ++C G P
Sbjct: 383 LVRVKVAEAGYYTMRAFHEDAEAQLSFQLQVNVPVRVLELSESHPASGEQTVRCRGRGMP 442
Query: 170 EPTIDWYFCPGTEQRCSVPVGPVDVQIQNSSVSPFGKLVIH----------SSIDYSAFK 319
+P + W C + RC + P + + S V + S++
Sbjct: 443 QPHLTWSTCSDLK-RCPRELPPTPLGNSSEEESQLETNVTYWPEDQEFEVVSTLRLRRVD 501
Query: 320 HNGTVECRAYNDVGKSSAFFNFAFKEQIHAHTL-FTPLLIGFVIAAGMMCII-VMILTYK 493
+V C +N +G + + H+L F ++I ++A ++ II ++IL
Sbjct: 502 QPLSVRCTLHNLLGHDMQ------EVTVVPHSLPFKVVVISAILALVVLTIISLIILIML 555
Query: 494 YLQKPMYEVQWKVVEEIN--GNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVV 667
+ +KP YE++WKV+E ++ G+ Y+Y+DP QLPYD WE PR++L G+TLG+GAFG+VV
Sbjct: 556 WQKKPRYEIRWKVIESVSSDGHEYIYVDPMQLPYDSTWELPRDQLVLGRTLGSGAFGQVV 615
Query: 668 EATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGG 847
EATA+GL S A M VAVKMLK +A +E++ALMSELK++S+LG H+N+VNLLGACT GG
Sbjct: 616 EATAHGLSHSQATMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNVVNLLGACTKGG 675
Query: 848 PTLVITEYCCYGDLLNFLRRKRDSF--ICSKQEDHAEAALYKNL------LHSKESSCSD 1003
P +ITEYC YGDL+++L R + +F +CS + A LY N L S S +
Sbjct: 676 PIYIITEYCRYGDLVDYLHRNKHTFLQLCSDKRRPPSAELYSNALPAGLPLPSHVSLPGE 735
Query: 1004 STNEYM--------------DMKPGVSYVVPTKADKRRSARIGSYIERDVTP------AI 1123
S YM DMK GV Y AD S+ + Y T A
Sbjct: 736 SDGGYMDMSKDESVDYVPMLDMKGGVKY-----ADIESSSYMAPYDNYVPTAPERTCRAT 790
Query: 1124 MXXXXXXXXXXXXXSFSYQVAKGMAFLASKN-------AR-------------------- 1222
+ FSYQVA GM FLASKN AR
Sbjct: 791 LINESPVLSYTDLVGFSYQVANGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARD 850
Query: 1223 --------------LPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVD 1360
LP+KWMAPESIFN +YT SDVWS+GI LWE+F+LG +PYP +P++
Sbjct: 851 IMRDSNYISKGSTFLPLKWMAPESIFNSLYTTLSDVWSFGILLWEIFTLGGTPYPELPMN 910
Query: 1361 SKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISESTNHIY 1540
+FY IK G+RM P HA E+Y+IM+ CW+ RP F Q+V L+E+ + E Y
Sbjct: 911 EQFYNAIKRGYRMAQPAHASDEIYEIMQKCWEEKFEIRPPFSQLVLLLERLLGEGYKKKY 970
Query: 1541 SNLANCSPHRENPAV 1585
+ ++PAV
Sbjct: 971 QQVDEEFLRSDHPAV 985
>ref|NP_001018647.1| FL cytokine receptor [Canis lupus familiaris].
Length = 993
Score = 325 bits (834), Expect = 9e-89
Identities = 202/565 (35%), Positives = 287/565 (50%), Gaps = 58/565 (10%)
Frame = +2
Query: 29 GTYTFLVSNADVNSSVTLNVYVNTKPEILTHDRLMNGMLQCVAAGFPEPTIDWYFCPGTE 208
G Y F N D + + + KP++ + C + G+P P+ W C
Sbjct: 414 GEYIFHAENDDAEFTKMFTLNIRRKPQVQANTSASQA--SCSSDGYPLPSWTWKKCSDKS 471
Query: 209 QRCSVPVGPVDVQIQNSSVSPFGKLVIHSSIDYSAFKHNGTVECRAYNDVGKS--SAFFN 382
C+ + + + ++ FG+ S+++ S V+C AYN +G S + N
Sbjct: 472 PNCTEEITE-GIWNKKANRKVFGQWTSSSTLNMSEAVKGFLVKCCAYNSLGTSCETILLN 530
Query: 383 ----FAFKEQIHAHTLFTPLLIGFVIAAGMMCIIVMILTYKYLQKPMYEVQWKVVEEING 550
F F + + L + F+ I+ M++ +KY ++ YE Q ++V+
Sbjct: 531 SPGPFPFIQDNVSFYATVGLCLPFI------AILTMLICHKYKKQFRYESQLQMVQVTGS 584
Query: 551 --NNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVK 724
N Y YID + YD KWEFPR L FGK LG+GAFGKV+ ATAYG+ K+ ++ VAVK
Sbjct: 585 LDNEYFYIDFREYEYDLKWEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVK 644
Query: 725 MLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLR 904
MLK A +EREALMSELK++++LGNH NIVNLLGACT+ GP +I EYCCYGDLLN+LR
Sbjct: 645 MLKEKADSSEREALMSELKMMTHLGNHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLR 704
Query: 905 RKRDSFICSKQEDHAE--AALYKNLLHSKESSCSDSTN-------EYMDMKPGVSYVVPT 1057
KR+ F + E E + Y SS S +++ G S+
Sbjct: 705 NKREKFHRTWTEIFKEHNFSFYPTFQSHPNSSMPGSREVQIQQDLDHISGLNGNSFQSED 764
Query: 1058 KADKRRSARIGSYIERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASK-------- 1213
+ + R+ E D+ F+YQVAKGM FL K
Sbjct: 765 EIEYENQKRLEE--EEDLN---------VLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLA 813
Query: 1214 ---------------------------------NARLPVKWMAPESIFNCVYTFESDVWS 1294
NARLPVKWMAPES+F +YT +SDVWS
Sbjct: 814 ARNVLVTHGKVVKICDFGLARDIMSDSNYVIRGNARLPVKWMAPESLFEGIYTIKSDVWS 873
Query: 1295 YGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLKR 1474
YGI LWE+FSLG +PYPG+PVD+ FYK+I+ GF+M P +A E+Y IM++CW D KR
Sbjct: 874 YGILLWEIFSLGVNPYPGIPVDANFYKLIQSGFKMDQPFYATEEIYFIMQSCWAFDSRKR 933
Query: 1475 PTFKQIVQLIEKQISESTNHIYSNL 1549
P+F + + Q++++ +Y N+
Sbjct: 934 PSFPNLTSFLGCQLADAEEAMYQNM 958
>ref|XP_534520.2| PREDICTED: similar to Vascular endothelial growth factor receptor 1
precursor (VEGFR-1) (Vascular permeability factor
receptor) (Tyrosine-protein kinase receptor FLT) (Flt-1)
(Tyrosine-protein kinase FRT) (Fms-like tyrosine kinase
1) [Canis familiaris].
Length = 1337
Score = 268 bits (684), Expect = 2e-71
Identities = 180/514 (35%), Positives = 260/514 (50%), Gaps = 62/514 (12%)
Frame = +2
Query: 143 LQCVAAGFPEPTIDWYFCPGT-EQRCSVPVGPVDVQIQNSSVSPFGKLVIHSSIDYSAFK 319
L C A G PEP I W+ +Q + +GP + V+ + V H A
Sbjct: 680 LDCPATGVPEPEITWFKNNHKIQQEPGIILGPGSSTLFIERVTEEDEGVYHCK----ATN 735
Query: 320 HNGTVECRAYNDVGKSSAFFNFAFKEQIHAHTLFTPLLIGFVIAAGMMCIIVMILTYKYL 499
G+VE AY V +S N + + A + +++ L + L
Sbjct: 736 QKGSVESSAYLTVQGTSDKSNLEL------------ITLTCTCVAATLFWLLLTLFIRKL 783
Query: 500 QKPMYEVQWKVVEEINGNNYVYIDPT--QLPYD-HKWEFPRNRLSFGKTLGAGAFGKVVE 670
++ E++ + I + V +D +LPYD KWEF R RL GK+LG GAFGKVV+
Sbjct: 784 KRSSSEIKTDYLSIIMDPDEVPLDEQCERLPYDASKWEFARERLKLGKSLGRGAFGKVVQ 843
Query: 671 ATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACT-IGG 847
A+A+G+ KS TVAVKMLK A +E +ALM+ELK+L+++G+H+N+VNLLGACT GG
Sbjct: 844 ASAFGIKKSPTCRTVAVKMLKEGATASEYKALMTELKILTHIGHHLNVVNLLGACTKQGG 903
Query: 848 PTLVITEYCCYGDLLNFLRRKRDSFICSKQEDHAEAALY----------------KNLLH 979
P +VI EYC YG+L N+L+ KRD F +K +AAL+ K L
Sbjct: 904 PLMVIVEYCKYGNLSNYLKSKRDLFFLNK-----DAALHMEPKKEKMEPDPEQDKKQRLD 958
Query: 980 SKESSCSDSTNEYMDMKPGVSYVVPTKADKRRSARIGSYIERDVTPAIMXXXXXXXXXXX 1159
S SS S +++ + + K + +D + ++ +T
Sbjct: 959 SVTSSESFASSGFQEDK--------SLSDVEEEEDSDDFYKQPIT------------MED 998
Query: 1160 XXSFSYQVAKGMAFLASK-----------------------------------------N 1216
S+S+QVA+GM FL+S+ +
Sbjct: 999 LISYSFQVARGMEFLSSRKCIHRDLAARNILLSENNVVKICDFGLARDIYKNPDYVRKGD 1058
Query: 1217 ARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFR 1396
RLP+KWMAPESIF+ +Y+ +SDVWSYG+ LWE+FSLG SPYPG+ +D F +KEG R
Sbjct: 1059 TRLPLKWMAPESIFDKIYSTKSDVWSYGVLLWEIFSLGGSPYPGVQMDEDFCSRLKEGMR 1118
Query: 1397 MLSPEHAPVEMYDIMKTCWDADPLKRPTFKQIVQ 1498
M +PE+A E+Y IM CW DP +RP F ++V+
Sbjct: 1119 MRAPEYATPEIYQIMLDCWHKDPKERPRFAELVE 1152
>ref|NP_001003336.1| fibroblast growth factor receptor 2 [Canis lupus familiaris].
Length = 707
Score = 227 bits (579), Expect = 3e-59
Identities = 125/327 (38%), Positives = 189/327 (57%), Gaps = 2/327 (0%)
Frame = +2
Query: 578 QLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDA--AMTVAVKMLKPSAHLT 751
+LP D KWEFPR++L+ GK LG G FG+VV A A G+ K A+TVAVKMLK A
Sbjct: 353 ELPEDPKWEFPRDKLTLGKPLGEGCFGQVVMAEAVGIDKEKPKEAVTVAVKMLKDDATEK 412
Query: 752 EREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICS 931
+ L+SE++++ +G H NI+NLLGACT GP VI EY G+L +LR +R +
Sbjct: 413 DLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGM-- 470
Query: 932 KQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADKRRSARIGSYIERDV 1111
E + N + ++ + D + + G+ Y+ K I RD+
Sbjct: 471 ------EYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKC-----------IHRDL 513
Query: 1112 TPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASKNARLPVKWMAPESIFNCVYTFESDVW 1291
+ + + + + N RLPVKWMAPE++F+ VYT +SDVW
Sbjct: 514 AARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVW 573
Query: 1292 SYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLK 1471
S+G+ +WE+F+LG SPYPG+PV+ + +K++KEG RM P + E+Y +M+ CW A P +
Sbjct: 574 SFGVLMWEIFTLGGSPYPGIPVE-ELFKLLKEGHRMDKPANCTNELYMMMRDCWHAVPSQ 632
Query: 1472 RPTFKQIVQLIEKQISESTNHIYSNLA 1552
RPTFKQ+V+ +++ ++ +TN Y +L+
Sbjct: 633 RPTFKQLVEDLDRILTLTTNEEYLDLS 659
>ref|XP_545926.2| PREDICTED: similar to Fibroblast growth factor receptor 3 precursor
(FGFR-3) [Canis familiaris].
Length = 833
Score = 224 bits (571), Expect = 3e-58
Identities = 125/331 (37%), Positives = 188/331 (56%), Gaps = 2/331 (0%)
Frame = +2
Query: 566 IDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAA--MTVAVKMLKPS 739
+ +LP D KWE R RL+ GK LG G FG+VV A A G+ K AA +TVAVKMLK
Sbjct: 481 VSELELPADPKWELSRARLTLGKPLGEGCFGQVVMAEAIGIDKDRAAKPVTVAVKMLKDD 540
Query: 740 AHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDS 919
A + L+SE++++ +G H NI+NLLGACT GGP V+ EY G+L +LR +R
Sbjct: 541 ATDKDLSDLVSEMEMMKMIGRHKNIINLLGACTQGGPLYVLVEYAAKGNLREYLRARRPP 600
Query: 920 FICSKQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADKRRSARIGSYI 1099
+ + + L ++ +C D + + G+ Y+ K I
Sbjct: 601 GM--------DYSFDTCKLPEEQLTCKDLVSCAYQVARGMEYLASQKC-----------I 641
Query: 1100 ERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASKNARLPVKWMAPESIFNCVYTFE 1279
RD+ + + V + + N RLPVKWMAPE++F+ VYT +
Sbjct: 642 HRDLAARNVLVTEDNVMKIADFGLARDVHNLDYYKKTTNGRLPVKWMAPEALFDRVYTHQ 701
Query: 1280 SDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDA 1459
SDVWS+G+ LWE+F+LG SPYPG+PV+ + +K++KEG RM P + ++Y IM+ CW A
Sbjct: 702 SDVWSFGVLLWEIFTLGGSPYPGIPVE-ELFKLLKEGHRMDKPANCTHDLYMIMRECWHA 760
Query: 1460 DPLKRPTFKQIVQLIEKQISESTNHIYSNLA 1552
P +RPTFKQ+V+ +++ ++ ++ Y +L+
Sbjct: 761 VPSQRPTFKQLVEDLDRILTVTSTDEYLDLS 791
>ref|XP_848780.1| PREDICTED: similar to fibroblast growth factor receptor 1 isoform 1
precursor isoform 3 [Canis familiaris].
Length = 820
Score = 218 bits (554), Expect = 3e-56
Identities = 123/329 (37%), Positives = 183/329 (55%), Gaps = 4/329 (1%)
Frame = +2
Query: 578 QLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKS--DAAMTVAVKMLKPSAHLT 751
+LP D +WE PR+RL GK LG G FG+VV A A GL K + VAVKMLK A
Sbjct: 462 ELPEDPRWELPRDRLVLGKPLGEGCFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEK 521
Query: 752 EREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFI-- 925
+ L+SE++++ +G H NI+NLLGACT GP VI EY G+L +L+ +R +
Sbjct: 522 DLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY 581
Query: 926 CSKQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADKRRSARIGSYIER 1105
C + E L S D + + G+ Y+ K I R
Sbjct: 582 CYNPSHNPEEQL----------SSKDLVSCAYQVARGMEYLASKKC-----------IHR 620
Query: 1106 DVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASKNARLPVKWMAPESIFNCVYTFESD 1285
D+ + + + + + N RLPVKWMAPE++F+ +YT +SD
Sbjct: 621 DLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSD 680
Query: 1286 VWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADP 1465
VWS+G+ LWE+F+LG SPYPG+PV+ + +K++KEG RM P + E+Y +M+ CW A P
Sbjct: 681 VWSFGVLLWEIFTLGGSPYPGVPVE-ELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVP 739
Query: 1466 LKRPTFKQIVQLIEKQISESTNHIYSNLA 1552
+RPTFKQ+V+ +++ ++ ++N Y +L+
Sbjct: 740 SQRPTFKQLVEDLDRIVALTSNQEYLDLS 768
>ref|XP_857002.1| PREDICTED: similar to fibroblast growth factor receptor 1 isoform 3
precursor isoform 9 [Canis familiaris].
Length = 731
Score = 218 bits (554), Expect = 3e-56
Identities = 123/329 (37%), Positives = 183/329 (55%), Gaps = 4/329 (1%)
Frame = +2
Query: 578 QLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKS--DAAMTVAVKMLKPSAHLT 751
+LP D +WE PR+RL GK LG G FG+VV A A GL K + VAVKMLK A
Sbjct: 373 ELPEDPRWELPRDRLVLGKPLGEGCFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEK 432
Query: 752 EREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFI-- 925
+ L+SE++++ +G H NI+NLLGACT GP VI EY G+L +L+ +R +
Sbjct: 433 DLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEY 492
Query: 926 CSKQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADKRRSARIGSYIER 1105
C + E L S D + + G+ Y+ K I R
Sbjct: 493 CYNPSHNPEEQL----------SSKDLVSCAYQVARGMEYLASKKC-----------IHR 531
Query: 1106 DVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASKNARLPVKWMAPESIFNCVYTFESD 1285
D+ + + + + + N RLPVKWMAPE++F+ +YT +SD
Sbjct: 532 DLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSD 591
Query: 1286 VWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADP 1465
VWS+G+ LWE+F+LG SPYPG+PV+ + +K++KEG RM P + E+Y +M+ CW A P
Sbjct: 592 VWSFGVLLWEIFTLGGSPYPGVPVE-ELFKLLKEGHRMDKPSNCTNELYMMMRDCWHAVP 650
Query: 1466 LKRPTFKQIVQLIEKQISESTNHIYSNLA 1552
+RPTFKQ+V+ +++ ++ ++N Y +L+
Sbjct: 651 SQRPTFKQLVEDLDRIVALTSNQEYLDLS 679
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 95,407,156
Number of extensions: 2539955
Number of successful extensions: 9762
Number of sequences better than 1.0e-05: 205
Number of HSP's gapped: 9289
Number of HSP's successfully gapped: 305
Length of query: 788
Length of database: 18,874,504
Length adjustment: 111
Effective length of query: 677
Effective length of database: 15,174,208
Effective search space: 10272938816
Effective search space used: 10272938816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012635
(2366 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001037990.1| mast/stem cell growth factor receptor precur... 1074 0.0
Alignment gi|XP_003124148.2| PREDICTED: macrophage colony-stimulating fac... 452 e-127
Alignment gi|XP_003354407.1| PREDICTED: beta-type platelet-derived growth... 421 e-118
Alignment gi|XP_003130961.2| PREDICTED: FL cytokine receptor-like [Sus sc... 323 2e-88
Alignment gi|XP_001925775.3| PREDICTED: LOW QUALITY PROTEIN: vascular end... 265 8e-71
Alignment gi|XP_003129035.2| PREDICTED: vascular endothelial growth facto... 252 6e-67
Alignment gi|XP_003123684.1| PREDICTED: vascular endothelial growth facto... 252 7e-67
Alignment gi|NP_001093394.1| fibroblast growth factor receptor 2 [Sus scr... 228 1e-59
Alignment gi|XP_003356969.1| PREDICTED: alpha-type platelet-derived growt... 220 2e-57
Alignment gi|XP_003123731.1| PREDICTED: fibroblast growth factor receptor... 219 5e-57
>ref|NP_001037990.1| mast/stem cell growth factor receptor precursor [Sus scrofa].
Length = 972
Score = 1074 bits (2777), Expect = 0.0
Identities = 537/593 (90%), Positives = 537/593 (90%), Gaps = 41/593 (6%)
Frame = +2
Query: 2 LTRLKGTEGGTYTFLVSNADVNSSVTLNVYVNTKPEILTHDRLMNGMLQCVAAGFPEPTI 181
LTRLKGTEGGTYTFLVSNADVNSSVT NVYVNTKPEILTHDRLMNGMLQCVAAGFPEPTI
Sbjct: 379 LTRLKGTEGGTYTFLVSNADVNSSVTFNVYVNTKPEILTHDRLMNGMLQCVAAGFPEPTI 438
Query: 182 DWYFCPGTEQRCSVPVGPVDVQIQNSSVSPFGKLVIHSSIDYSAFKHNGTVECRAYNDVG 361
DWYFCPGTEQRCSVPVGPVDVQIQNSSVSPFGKLVIHSSIDYSAFKHNGTVECRAYNDVG
Sbjct: 439 DWYFCPGTEQRCSVPVGPVDVQIQNSSVSPFGKLVIHSSIDYSAFKHNGTVECRAYNDVG 498
Query: 362 KSSAFFNFAFKEQIHAHTLFTPLLIGFVIAAGMMCIIVMILTYKYLQKPMYEVQWKVVEE 541
KSSAFFNFAFKEQIHAHTLFTPLLIGFVIAAGMMCIIVMILTYKYLQKPMYEVQWKVVEE
Sbjct: 499 KSSAFFNFAFKEQIHAHTLFTPLLIGFVIAAGMMCIIVMILTYKYLQKPMYEVQWKVVEE 558
Query: 542 INGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAV 721
INGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAV
Sbjct: 559 INGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAV 618
Query: 722 KMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFL 901
KMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFL
Sbjct: 619 KMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFL 678
Query: 902 RRKRDSFICSKQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADKRRSA 1081
RRKRDSFICSKQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADKRRSA
Sbjct: 679 RRKRDSFICSKQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADKRRSA 738
Query: 1082 RIGSYIERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASK---------------- 1213
RIGSYIERDVTPAIM SFSYQVAKGMAFLASK
Sbjct: 739 RIGSYIERDVTPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTH 798
Query: 1214 -------------------------NARLPVKWMAPESIFNCVYTFESDVWSYGIFLWEL 1318
NARLPVKWMAPESIFNCVYTFESDVWSYGIFLWEL
Sbjct: 799 GRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWEL 858
Query: 1319 FSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLKRPTFKQIVQ 1498
FSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAP EMYDIMKTCWDADPLKRPTFKQIVQ
Sbjct: 859 FSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQ 918
Query: 1499 LIEKQISESTNHIYSNLANCSPHRENPAVDHSVRINSVGSSASSTQPLLVHED 1657
LIEKQISESTNHIYSNLANCSPHRENPAVDHSVRINSVGSSASSTQPLLVHED
Sbjct: 919 LIEKQISESTNHIYSNLANCSPHRENPAVDHSVRINSVGSSASSTQPLLVHED 971
>ref|XP_003124148.2| PREDICTED: macrophage colony-stimulating factor 1 receptor, partial
[Sus scrofa].
Length = 941
Score = 452 bits (1163), Expect = e-127
Identities = 258/588 (43%), Positives = 341/588 (57%), Gaps = 62/588 (10%)
Frame = +2
Query: 2 LTRLKGTEGGTYTFLVSNADVNSSVTLNVYVNTKPEILTHDRLMNGM--LQCVAAGFPEP 175
L RLK +E G Y+FL NA +T + + PE+ L+NG L C A+G+P+P
Sbjct: 371 LPRLKPSEAGRYSFLARNARGEGVLTFELTLLYPPEVRITWSLVNGSRALVCQASGYPQP 430
Query: 176 TIDWYFCPGTEQRCSVPVGPVDVQIQNS------SVSPFGKLVIHSSIDYSAFKHNGTVE 337
+ W +C G RC V +Q + S PF K + + + N T E
Sbjct: 431 NVTWVWCGGHTDRCE----GAGVLVQEALGPEVLSQEPFHKATVQRLLAVGTLERNRTYE 486
Query: 338 CRAYNDVGKSS-AFFNFAFKEQIHA--HTLFTPLLIGFVIAAGMMCIIVMILTYKYLQKP 508
CRA N +G SS AF + Q+H+ LFTP+L+ V ++ +++++L YKY QKP
Sbjct: 487 CRACNSLGNSSHAFQPVSVAAQVHSPDEPLFTPVLVACVSIMALLLLLLLLLLYKYKQKP 546
Query: 509 MYEVQWKVVEEINGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGL 688
Y+V+WK++E GN+Y +IDPTQLPY KWEFPRN+L FGKTLGAGAFGKVVEATA+GL
Sbjct: 547 KYQVRWKIIESFAGNSYTFIDPTQLPYSEKWEFPRNKLQFGKTLGAGAFGKVVEATAFGL 606
Query: 689 IKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITE 868
+ DA + VAVKMLK +AH E+EALMSELK++S+LG H N VNLLGACT GGP LVITE
Sbjct: 607 GQEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGPHENTVNLLGACTHGGPVLVITE 666
Query: 869 YCCYGDLLNFLRRKRDSFI---CSKQEDHAEAALYKNLLHSKESSCSDS------TNEYM 1021
YCCYGDLLNFLRRK ++ + + + YKN+ K+ + DS + Y+
Sbjct: 667 YCCYGDLLNFLRRKAEAMLGPGLNPGQSPEPGPGYKNIPLEKKYTRRDSGFSSQGVDAYV 726
Query: 1022 DMKPGVSYVVPTKADKRRSARIGSYIERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAF 1201
+M+P V T S+ S+ E+D+ FS QVA+GMAF
Sbjct: 727 EMRP-----VST------SSSNDSFSEQDLD----KEDGRPLELCDLLRFSSQVAQGMAF 771
Query: 1202 LASK-----------------------------------------NARLPVKWMAPESIF 1258
LASK NARLPVKWMAPESIF
Sbjct: 772 LASKNCIHRDVAARNVLLTSGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIF 831
Query: 1259 NCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDI 1438
+CVYT +SDVWSYGI LWE+FSLG +PYPG+ V+SKFYK++K+G++M P AP +Y I
Sbjct: 832 DCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKFYKLVKDGYQMAQPAFAPKNIYSI 891
Query: 1439 MKTCWDADPLKRPTFKQIVQLIEKQI-SESTNHIYSNLANCSPHRENP 1579
M+ CW +P +RPTF+QI L+++Q + YSNL + S P
Sbjct: 892 MQACWALEPTRRPTFQQICSLLQEQSHGDQRARDYSNLPSSSSSSSEP 939
>ref|XP_003354407.1| PREDICTED: beta-type platelet-derived growth factor receptor-like
[Sus scrofa].
Length = 913
Score = 421 bits (1083), Expect = e-118
Identities = 248/604 (41%), Positives = 328/604 (54%), Gaps = 76/604 (12%)
Frame = +2
Query: 2 LTRLKGTEGGTYTFLVSNADVNSSVTLNVYVNTKPEILTHDRLMNGM--LQCVAAGFPEP 175
L RLK +E G Y+FL NA +T + + PE+ L+NG L C A+G+P+P
Sbjct: 194 LPRLKPSEAGRYSFLARNARGEGVLTFELTLLYPPEVRITWSLVNGSRALVCQASGYPQP 253
Query: 176 TIDWYFCPGTEQRCSVPVGPVDVQIQNS------SVSPFGKLVIHSSIDYSAFKHNGTVE 337
+ W +C G RC V +Q + S PF K + + + N T E
Sbjct: 254 NVTWVWCGGHTDRCE----GAGVLVQEALGPEVLSQEPFHKATVQRLLAVGTLERNRTYE 309
Query: 338 CRAYNDVGKSS-AFFNFAFKEQIHA--HTLFTPLLIGFVIAAGMMCIIVMILTYKYLQKP 508
C A N +G SS AF + Q+H+ LFTP+L+ V ++ +++++L YKY QKP
Sbjct: 310 CWARNSLGNSSHAFQPVSVAAQVHSPDEPLFTPVLVACVSIMALLLLLLLLLLYKYKQKP 369
Query: 509 MYEVQWKVVEEINGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGL 688
Y+V+WK++E GN+Y +IDPTQLPY KWEFPRN+L FGKTLGAGAFGKVVEATA+GL
Sbjct: 370 KYQVRWKIIESFAGNSYTFIDPTQLPYSEKWEFPRNKLQFGKTLGAGAFGKVVEATAFGL 429
Query: 689 IKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITE 868
+ DA + VAVKMLK +AH E+EALMSELK++S+LG H N VNLLGACT GGP +ITE
Sbjct: 430 GQEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGPHENTVNLLGACTHGGPIYIITE 489
Query: 869 YCCYGDLLNFLRRKRDSFI--CSKQEDHAEAALYKNL------LHSKESSCSDSTNEYMD 1024
YC YGDL++FL R + +F+ CS + A LY N L S + +S YMD
Sbjct: 490 YCRYGDLVDFLHRNKHTFLQRCSDKRRPPSAELYSNALPVGLPLPSHVALPGESDGGYMD 549
Query: 1025 MKPGVSYVVPTKADKRRSAR----------------IGSYIERDVTPAIMXXXXXXXXXX 1156
M S D R + + S ER P ++
Sbjct: 550 MSKDESVDYVPMLDMRGDVKYADIQPSGYMAPYDNCVPSAPERTCRPTLI-NESPVLSYT 608
Query: 1157 XXXSFSYQVAKGMAFLASKN-------AR------------------------------- 1222
FSYQVA GM FLASKN AR
Sbjct: 609 DLVGFSYQVANGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMRDSNYISKG 668
Query: 1223 ---LPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGF 1393
LP+KWMAPESIFN +YT SDVWS+GI LWE+F+LG +PYP +P++ +FY IK G+
Sbjct: 669 STFLPLKWMAPESIFNSLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNEQFYNAIKRGY 728
Query: 1394 RMLSPEHAPVEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISESTNHIYSNLANCSPHRE 1573
RM P HA E+Y+IM+ CW+ RP F Q+V L+E+ + E Y + +
Sbjct: 729 RMAQPAHASDEIYEIMQKCWEEKFEIRPPFSQLVLLLERLLGEGYKKKYQQVDEEFLRSD 788
Query: 1574 NPAV 1585
+PAV
Sbjct: 789 HPAV 792
>ref|XP_003130961.2| PREDICTED: FL cytokine receptor-like [Sus scrofa].
Length = 594
Score = 323 bits (829), Expect = 2e-88
Identities = 202/564 (35%), Positives = 287/564 (50%), Gaps = 58/564 (10%)
Frame = +2
Query: 29 GTYTFLVSNADVNSSVTLNVYVNTKPEILTHDRLMNGMLQCVAAGFPEPTIDWYFCPGTE 208
G Y F N D + + + KP++L C + G+P P+ W C
Sbjct: 18 GQYIFHAENDDAQFTKMFTLNIRRKPQVLAEASASQA--SCSSDGYPLPSWTWKKCSDKS 75
Query: 209 QRCSVPVGPVDVQIQNSSVSPFGKLVIHSSIDYSAFKHNGTVECRAYNDVGKS--SAFFN 382
C+ + + + ++ FG+ + S+++ S V+C AYN +G S + N
Sbjct: 76 PNCTEEITE-GIWNKKANRKVFGQWISSSTLNMSEAVKGFLVKCCAYNSLGTSCETILLN 134
Query: 383 ----FAFKEQIHAHTLFTPLLIGFVIAAGMMCIIVMILTYKYLQKPMYEVQWKVVEEING 550
F F + + L + F+ ++ M++ +KY ++ YE Q ++V+
Sbjct: 135 SPGPFPFIQDNISFYATIGLCLPFI------AVLTMLICHKYKKRFRYESQLQMVQVTGS 188
Query: 551 --NNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVK 724
N+Y YID + YD KWEFPR L FGK LG+GAFGKV+ ATAYG+ K+ ++ VAVK
Sbjct: 189 LDNDYFYIDFREYEYDLKWEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVK 248
Query: 725 MLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLR 904
MLK A +EREALMSELK++++LG+H NIVNLLGACT+ GP +I EYCCYGDLLN+LR
Sbjct: 249 MLKEKADSSEREALMSELKMMTHLGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLR 308
Query: 905 RKRDSFICSKQEDHAE--AALYKNLLHSKESSC--SDSTNEYMDMKP-----GVSYVVPT 1057
KR+ F + E E + Y SS S + D P G S+
Sbjct: 309 SKREKFHRTWTEIFKEHNFSFYPTFQSHPNSSMPGSREVQIHPDSDPISGFNGNSFQSED 368
Query: 1058 KADKRRSARIGSYIERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASK-------- 1213
+ + R+ E D+ F+YQVAKGM FL K
Sbjct: 369 EIEYENQKRLEE--EEDLN---------VLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLA 417
Query: 1214 ---------------------------------NARLPVKWMAPESIFNCVYTFESDVWS 1294
NARLPVKWMAPES+F +YT +SDVWS
Sbjct: 418 ARNVLVTHGKVVKIGDFGLARDIMSDSNYVIRGNARLPVKWMAPESLFEGIYTIKSDVWS 477
Query: 1295 YGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLKR 1474
YGI LWE+FSLG +PYPG+P D+ FYK+I+ GF+M P +A E+Y IM++CW D KR
Sbjct: 478 YGILLWEIFSLGVNPYPGIPADANFYKLIQSGFKMDQPFYATEEIYFIMQSCWAFDSRKR 537
Query: 1475 PTFKQIVQLIEKQISESTNHIYSN 1546
P+F + + Q++++ +Y N
Sbjct: 538 PSFPNLTSFLGCQLADAEEAMYQN 561
>ref|XP_001925775.3| PREDICTED: LOW QUALITY PROTEIN: vascular endothelial growth factor
receptor 1 [Sus scrofa].
Length = 1347
Score = 265 bits (677), Expect = 8e-71
Identities = 184/509 (36%), Positives = 260/509 (51%), Gaps = 53/509 (10%)
Frame = +2
Query: 143 LQCVAAGFPEPTIDWYFCPGT-EQRCSVPVGPVDVQIQNSSVSPFGKLVIHSSIDYSAFK 319
L C A G PEP I W+ +Q + +GP S + F I+ +
Sbjct: 688 LDCHANGVPEPQITWFKNNHKIQQEPGIILGP-------GSSTLF--------IERVTXE 732
Query: 320 HNGTVECRAYNDVG--KSSAFFNFAFKEQIHAHTLFTPLLIGFVIAAGMMCIIVMILTYK 493
G CRA N G +SSA+ + + L T L +AA + +++ + K
Sbjct: 733 DEGVYHCRATNQKGSAESSAYLSVQGTSDKSSLELIT--LTCTCVAATLFWLLLTLFIRK 790
Query: 494 YLQKPMYEVQWKVVEEINGNNYVYIDPT--QLPYD-HKWEFPRNRLSFGKTLGAGAFGKV 664
L++ E++ + I + V +D +LPYD KWEF R RL GK+LG GAFGKV
Sbjct: 791 -LKRSSSEIKADYLSIIMDPDEVPLDEQCERLPYDASKWEFARERLKLGKSLGRGAFGKV 849
Query: 665 VEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACT-I 841
V+A+A+G+ KS TVAVKMLK A +E +ALM+ELK+L+++G+H+N+VNLLGACT
Sbjct: 850 VQASAFGIKKSPTCRTVAVKMLKEGATASEYKALMTELKILTHIGHHLNVVNLLGACTKQ 909
Query: 842 GGPTLVITEYCCYGDLLNFLRRKRDSFICSKQEDHAEAALYKNLLHSKESSCSDSTNEYM 1021
GGP +VI EYC YG+L N+L+ KR F +K +AAL+ K
Sbjct: 910 GGPLMVIVEYCKYGNLSNYLKSKRALFFINK-----DAALHVEPKKEKMEP--------- 955
Query: 1022 DMKPGVSYVVPTKADKRRSARIGSYIERDVTPA-----IMXXXXXXXXXXXXXSFSYQVA 1186
D +PG + + A G ++ ++ A S+S+QVA
Sbjct: 956 DPEPGKKQRLDSVTSSESFASSGFQEDKSLSDAEEEEDSDDFYKQPITMEDLISYSFQVA 1015
Query: 1187 KGMAFLASK-----------------------------------------NARLPVKWMA 1243
+GM FL+S+ + RLP+KWMA
Sbjct: 1016 RGMEFLSSRKCIHRDLAARNILLSENNVVKICDFGLARDIYKNPDYVRKGDTRLPLKWMA 1075
Query: 1244 PESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPV 1423
PESIF+ +Y+ +SDVWSYG+ LWE+FSLG SPYPG+ +D F +KEG RM +PE+A
Sbjct: 1076 PESIFDKIYSTKSDVWSYGVLLWEIFSLGGSPYPGVQMDEDFCSRLKEGVRMRAPEYATP 1135
Query: 1424 EMYDIMKTCWDADPLKRPTFKQIVQLIEK 1510
E+Y IM CW DP +RP F V+L+EK
Sbjct: 1136 EIYQIMLDCWHKDPKERPRF---VELVEK 1161
>ref|XP_003129035.2| PREDICTED: vascular endothelial growth factor receptor 2 [Sus
scrofa].
Length = 1347
Score = 252 bits (644), Expect = 6e-67
Identities = 169/520 (32%), Positives = 255/520 (49%), Gaps = 68/520 (13%)
Frame = +2
Query: 143 LQCVAAGFPEPTIDWYFCPGTEQRCSVPVGPVDVQIQNSSVSPFGKLVIHSSIDYSAFKH 322
+ C A+G P P I W+ + V + ++ N +++ I +
Sbjct: 677 VSCTASGNPSPQITWF----KDNETLVEDSGIVLKDGNRNLT----------IRRVRKED 722
Query: 323 NGTVECRAYNDVGKSSAFFNFAFKEQIHAHTLFTPLLIGFVIAAGMMCIIVMILTYKYLQ 502
G C+A + +G + F + L +L+G + A ++++I+
Sbjct: 723 EGLYTCQACSVLGCAKVEAFFIVEGAQEKTNLEVIILVGTAVIAMFFWLLLVIVL----- 777
Query: 503 KPMYEVQWKVVEEINGNNY------VYIDPTQLPYDH----------KWEFPRNRLSFGK 634
+ V+ NG + +DP +LP D KWEFPR+RL GK
Sbjct: 778 --------RTVKRANGGELKTGYLSIVMDPDELPLDEHCERLPYDASKWEFPRDRLKLGK 829
Query: 635 TLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNI 814
LG GAFG+V+EA A+G+ K+ TVAVKMLK A +E ALMSELK+L ++G+H+N+
Sbjct: 830 PLGRGAFGQVIEADAFGIDKTATCKTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNV 889
Query: 815 VNLLGACT-IGGPTLVITEYCCYGDLLNFLRRKRDSFICSK---------QEDHAEAAL- 961
VNLLGACT GGP +VI E+C +G+L +LR KR+ F+ K +E E +
Sbjct: 890 VNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKEYVGEITVD 949
Query: 962 YKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADKRRSARIGSYIERDVTPAIMXXXXX 1141
K L S SS S +++ +++ K + E +V+ +
Sbjct: 950 PKRRLDSITSSQSSASSGFVEEK-----------------SLSDVEEEEVSEDL---YKN 989
Query: 1142 XXXXXXXXSFSYQVAKGMAFLASK------------------------------------ 1213
+S+QVAKGM FLAS+
Sbjct: 990 FLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPD 1049
Query: 1214 -----NARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKM 1378
+ARLP+KWMAPE+IF+ VYT +SDVWS+G+ LWE+FSLG+SPYPG+ +D +F +
Sbjct: 1050 YVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRR 1109
Query: 1379 IKEGFRMLSPEHAPVEMYDIMKTCWDADPLKRPTFKQIVQ 1498
+KEG RM +P++ EMY M CW +P +RPTF ++V+
Sbjct: 1110 LKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVE 1149
>ref|XP_003123684.1| PREDICTED: vascular endothelial growth factor receptor 3-like [Sus
scrofa].
Length = 1389
Score = 252 bits (643), Expect = 7e-67
Identities = 164/506 (32%), Positives = 262/506 (51%), Gaps = 52/506 (10%)
Frame = +2
Query: 143 LQCVAAGFPEPTIDWYFCPGTEQRCSVPVGPVDVQIQNSSVSPFGKLVIHSSIDYSAFKH 322
++C AG P+I WY ++R +D+ N KL I + A
Sbjct: 723 MRCPVAGAHVPSIVWY----KDERLLAEESGIDLTDSNQ------KLSIRRVREEDA--- 769
Query: 323 NGTVECRAYNDVGKSSAFFNFAFKEQIHAHTLFTPLLIGFVIAAGMMCIIVMILTYKYLQ 502
G C N G ++ + A + ++ +L+G + A ++++++ + ++
Sbjct: 770 -GRYLCSVCNAKGCVNSSASVAVEGSEDKGSMEIVILVGTGVIAVFFWVLLLLI-FCNMR 827
Query: 503 KPMYEVQWKVVEEINGNNYVYIDPTQLPYDHK----------WEFPRNRLSFGKTLGAGA 652
+P + + G + +DP ++P + + WEFPR RL G+ LG GA
Sbjct: 828 RPTH------ADIKTGYLSIIMDPGEVPLEEQCEYLSYDASQWEFPRERLHLGRVLGHGA 881
Query: 653 FGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGA 832
FGKVVEA+A+G+ K + TVAVKMLK A +E ALMSELK+L ++GNH+N+VNLLGA
Sbjct: 882 FGKVVEASAFGINKGSSCDTVAVKMLKEGATASEHRALMSELKILIHIGNHLNVVNLLGA 941
Query: 833 CT-IGGPTLVITEYCCYGDLLNFLRRKRDSFICSKQEDHAEAALYKNLLHSKESSCSDST 1009
CT GP +VI E+C YG+L NFLR KR++F ++ + +++++ ES+ +D
Sbjct: 942 CTKPNGPLMVIVEFCKYGNLSNFLRAKREAFNPYAEKTLEQRRRFRSMV---ESAKADRR 998
Query: 1010 NEYMDMKPGVSYVVPTKADKRRSARIGSYIERDVTPAIMXXXXXXXXXXXXXSFSYQVAK 1189
+ ++ ++ K R+ + + ++P M +S+QVA+
Sbjct: 999 RPGTSDRALLTKLLTGKGGAGRAPLVQEAEDLWLSPLTM---------EDLVCYSFQVAR 1049
Query: 1190 GMAFLASK-----------------------------------------NARLPVKWMAP 1246
GM FLAS+ +ARLP+KWMAP
Sbjct: 1050 GMEFLASRKCIHRDLAARNILLSESDVVKICDFGLARDIYKDPDYVRKGSARLPLKWMAP 1109
Query: 1247 ESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVE 1426
ESIF+ VYT +SDVWS+G+ LWE+FSLG+SPYPG+ ++ +F + +KEG RM +PE A
Sbjct: 1110 ESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQINEEFCQRLKEGTRMRAPELATPA 1169
Query: 1427 MYDIMKTCWDADPLKRPTFKQIVQLI 1504
+ IM +CW +P +RP F +V+++
Sbjct: 1170 IRRIMLSCWAGEPKERPAFSDLVEIL 1195
>ref|NP_001093394.1| fibroblast growth factor receptor 2 [Sus scrofa].
Length = 822
Score = 228 bits (580), Expect = 1e-59
Identities = 125/327 (38%), Positives = 189/327 (57%), Gaps = 2/327 (0%)
Frame = +2
Query: 578 QLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDA--AMTVAVKMLKPSAHLT 751
+LP D KWEFPR++L+ GK LG G FG+VV A A G+ K A+TVAVKMLK A
Sbjct: 468 ELPEDPKWEFPRDKLTLGKPLGEGCFGQVVMAEAVGIDKEKPKEAVTVAVKMLKDDATEK 527
Query: 752 EREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICS 931
+ L+SE++++ +G H NI+NLLGACT GP VI EY G+L +LR +R +
Sbjct: 528 DLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGM-- 585
Query: 932 KQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADKRRSARIGSYIERDV 1111
E + N + ++ + D + + G+ Y+ K I RD+
Sbjct: 586 ------EYSYDVNRVPEEQMTFKDLVSCTYQLARGMEYLASQKC-----------IHRDL 628
Query: 1112 TPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASKNARLPVKWMAPESIFNCVYTFESDVW 1291
+ + + + + N RLPVKWMAPE++F+ VYT +SDVW
Sbjct: 629 AARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVW 688
Query: 1292 SYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLK 1471
S+G+ +WE+F+LG SPYPG+PV+ + +K++KEG RM P + E+Y +M+ CW A P +
Sbjct: 689 SFGVLMWEIFTLGGSPYPGIPVE-ELFKLLKEGHRMDKPANCTNELYMMMRDCWHAVPSQ 747
Query: 1472 RPTFKQIVQLIEKQISESTNHIYSNLA 1552
RPTFKQ+V+ +++ ++ +TN Y +L+
Sbjct: 748 RPTFKQLVEDLDRILTLTTNEDYLDLS 774
>ref|XP_003356969.1| PREDICTED: alpha-type platelet-derived growth factor receptor-like,
partial [Sus scrofa].
Length = 451
Score = 220 bits (561), Expect = 2e-57
Identities = 136/339 (40%), Positives = 181/339 (53%), Gaps = 63/339 (18%)
Frame = +2
Query: 758 EALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKQ 937
+ALMSELK++++LG H+NIVNLLGACT GP +ITEYC YGDL+N+L + RDSF+
Sbjct: 1 QALMSELKIMTHLGPHLNIVNLLGACTKSGPIYIITEYCFYGDLVNYLHKNRDSFLSRHP 60
Query: 938 EDHAEAALYKNLLHSKESSCS------DSTNEYMDMKPG--VSYV-------VPTKADKR 1072
E + L + ES+ S ++ +YMDMK YV V +D +
Sbjct: 61 EKPKKELDIFGLNPADESTRSYVILSFENNGDYMDMKQADTTQYVPMLERKEVSKYSDIQ 120
Query: 1073 RSA--RIGSY-----IERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASKN----- 1216
RS R SY ++ +V + SF+YQVA+GM FLASKN
Sbjct: 121 RSLYDRPASYKKKSMLDSEVKNLLSDDNSDGLTLLDLLSFTYQVARGMEFLASKNCVHRD 180
Query: 1217 ---------------------AR---------------LPVKWMAPESIFNCVYTFESDV 1288
AR LPVKWMAPESIF+ +YT SDV
Sbjct: 181 LAARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESIFDNLYTTLSDV 240
Query: 1289 WSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPL 1468
WSYGI LWE+FSLG +PYPGM VDS FY IK G+RM P+HA E+Y+IM CW+++P
Sbjct: 241 WSYGILLWEIFSLGGTPYPGMMVDSTFYNKIKSGYRMAKPDHATSEVYEIMVKCWNSEPE 300
Query: 1469 KRPTFKQIVQLIEKQISESTNHIYSNLANCSPHRENPAV 1585
KRP+F + +++E + Y + ++PAV
Sbjct: 301 KRPSFYHLSEIVENLLPGQYKKSYEKIHLDFLKSDHPAV 339
>ref|XP_003123731.1| PREDICTED: fibroblast growth factor receptor 4 isoform 2 [Sus
scrofa].
Length = 760
Score = 219 bits (558), Expect = 5e-57
Identities = 138/366 (37%), Positives = 194/366 (53%), Gaps = 8/366 (2%)
Frame = +2
Query: 581 LPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGL--IKSDAAMTVAVKMLKPSAHLTE 754
LP D WEFPR+RL GK LG G FG+VV A A+G+ + D A TVAVKMLK +A +
Sbjct: 414 LPLDPLWEFPRDRLVLGKPLGEGCFGQVVCAEAFGMDPTRPDQASTVAVKMLKDNASDKD 473
Query: 755 REALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSF--IC 928
L+SE++V+ +G H NI+NLLG CT GP VI E G+L FLR +R +
Sbjct: 474 LADLVSEMEVMKLIGRHKNIINLLGVCTQEGPLYVIVECAAKGNLREFLRARRPPGPDLS 533
Query: 929 SKQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADKRRSARIGSYIERD 1108
+E L L SC+ + G+ Y+ K R A + D
Sbjct: 534 PDGPRSSEGPLSFPAL----VSCA------YQVARGMQYLESQKCIHRDLAARNVLVTED 583
Query: 1109 VTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFL----ASKNARLPVKWMAPESIFNCVYTF 1276
I + +A+G+ + + N RLPVKWMAPE++F+ VYT
Sbjct: 584 NVMKIA---------------DFGLARGIHHIDYYKKTSNGRLPVKWMAPEALFDRVYTH 628
Query: 1277 ESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWD 1456
+SDVWS+GI LWE+F+LG SPYPG+PV+ + + +++EG RM P H P E+Y +M+ CW
Sbjct: 629 QSDVWSFGILLWEIFTLGGSPYPGIPVE-ELFSLLREGHRMDRPPHCPPELYGLMRECWH 687
Query: 1457 ADPLKRPTFKQIVQLIEKQISESTNHIYSNLANCSPHRENPAVDHSVRINSVGSSASSTQ 1636
A P +RPTFKQ+V+ ++K + + P+ +PA SS SS+
Sbjct: 688 AAPSQRPTFKQLVEALDKVLLAVSEEYLDLRLTFGPY--SPAG------GDASSSCSSSD 739
Query: 1637 PLLVHE 1654
+ HE
Sbjct: 740 SVFSHE 745
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 58,858,779
Number of extensions: 1586341
Number of successful extensions: 6202
Number of sequences better than 1.0e-05: 111
Number of HSP's gapped: 5968
Number of HSP's successfully gapped: 160
Length of query: 788
Length of database: 11,343,932
Length adjustment: 107
Effective length of query: 681
Effective length of database: 8,679,953
Effective search space: 5911047993
Effective search space used: 5911047993
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012635
(2366 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_066922.2| mast/stem cell growth factor receptor isoform 2... 979 0.0
Alignment gi|NP_001116205.1| mast/stem cell growth factor receptor isofor... 973 0.0
Alignment gi|NP_001032948.2| macrophage colony-stimulating factor 1 recep... 455 e-128
Alignment gi|NP_001076785.1| alpha-type platelet-derived growth factor re... 363 e-100
Alignment gi|NP_035188.2| alpha-type platelet-derived growth factor recep... 363 e-100
Alignment gi|NP_001139740.1| beta-type platelet-derived growth factor rec... 345 1e-94
Alignment gi|NP_032835.2| beta-type platelet-derived growth factor recept... 340 3e-93
Alignment gi|NP_034359.2| FL cytokine receptor [Mus musculus]. 330 4e-90
Alignment gi|NP_034337.2| fibroblast growth factor receptor 2 isoform III... 227 4e-59
Alignment gi|NP_963895.2| fibroblast growth factor receptor 2 isoform III... 227 4e-59
>ref|NP_066922.2| mast/stem cell growth factor receptor isoform 2 [Mus musculus].
Length = 975
Score = 979 bits (2530), Expect = 0.0
Identities = 490/594 (82%), Positives = 513/594 (86%), Gaps = 42/594 (7%)
Frame = +2
Query: 2 LTRLKGTEGGTYTFLVSNADVNSSVTLNVYVNTKPEILTHDRLMNGMLQCVAAGFPEPTI 181
LTRLKGTEGGTYTFLVSN+D ++SVT NVYVNTKPEILT+DRL+NGMLQCVA GFPEPTI
Sbjct: 382 LTRLKGTEGGTYTFLVSNSDASASVTFNVYVNTKPEILTYDRLINGMLQCVAEGFPEPTI 441
Query: 182 DWYFCPGTEQRCSVPVGPVDVQIQNSSVSPFGKLVIHSSIDYSAFKHNGTVECRAYNDVG 361
DWYFC G EQRC+ PV PVDVQ+QN SVSPFGKLV+ SSID S F+HNGTVEC+A NDVG
Sbjct: 442 DWYFCTGAEQRCTTPVSPVDVQVQNVSVSPFGKLVVQSSIDSSVFRHNGTVECKASNDVG 501
Query: 362 KSSAFFNFAFKEQIHAHTLFTPLLIGFVIAAGMMCIIVMILTYKYLQKPMYEVQWKVVEE 541
KSSAFFNFAFKEQI AHTLFTPLLIGFV+AAG M IIVM+LTYKYLQKPMYEVQWKVVEE
Sbjct: 502 KSSAFFNFAFKEQIQAHTLFTPLLIGFVVAAGAMGIIVMVLTYKYLQKPMYEVQWKVVEE 561
Query: 542 INGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAV 721
INGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAV
Sbjct: 562 INGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAV 621
Query: 722 KMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFL 901
KMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACT+GGPTLVITEYCCYGDLLNFL
Sbjct: 622 KMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTVGGPTLVITEYCCYGDLLNFL 681
Query: 902 RRKRDSFICSKQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADKRRSA 1081
RRKRDSFI SKQE+ AEAALYKNLLHS E SC DS+NEYMDMKPGVSYVVPTK DKRRSA
Sbjct: 682 RRKRDSFIFSKQEEQAEAALYKNLLHSTEPSC-DSSNEYMDMKPGVSYVVPTKTDKRRSA 740
Query: 1082 RIGSYIERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASK---------------- 1213
RI SYIERDVTPAIM SFSYQVAKGMAFLASK
Sbjct: 741 RIDSYIERDVTPAIMEDDELALDLDDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTH 800
Query: 1214 -------------------------NARLPVKWMAPESIFNCVYTFESDVWSYGIFLWEL 1318
NARLPVKWMAPESIF+CVYTFESDVWSYGIFLWEL
Sbjct: 801 GRITKICDFGLARDIRNDSNYVVKGNARLPVKWMAPESIFSCVYTFESDVWSYGIFLWEL 860
Query: 1319 FSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLKRPTFKQIVQ 1498
FSLGSSPYPGMPVDSKFYKMIKEGFRM+SPEHAP EMYD+MKTCWDADPLKRPTFKQ+VQ
Sbjct: 861 FSLGSSPYPGMPVDSKFYKMIKEGFRMVSPEHAPAEMYDVMKTCWDADPLKRPTFKQVVQ 920
Query: 1499 LIEKQISESTNHIYSNLANCSPHRENP-AVDHSVRINSVGSSASSTQPLLVHED 1657
LIEKQIS+ST HIYSNLANC+P+ ENP VDHSVR+NSVGSSASSTQPLLVHED
Sbjct: 921 LIEKQISDSTKHIYSNLANCNPNPENPVVVDHSVRVNSVGSSASSTQPLLVHED 974
>ref|NP_001116205.1| mast/stem cell growth factor receptor isoform 1 [Mus musculus].
Length = 979
Score = 973 bits (2515), Expect = 0.0
Identities = 490/598 (81%), Positives = 513/598 (85%), Gaps = 46/598 (7%)
Frame = +2
Query: 2 LTRLKGTEGGTYTFLVSNADVNSSVTLNVYVNTKPEILTHDRLMNGMLQCVAAGFPEPTI 181
LTRLKGTEGGTYTFLVSN+D ++SVT NVYVNTKPEILT+DRL+NGMLQCVA GFPEPTI
Sbjct: 382 LTRLKGTEGGTYTFLVSNSDASASVTFNVYVNTKPEILTYDRLINGMLQCVAEGFPEPTI 441
Query: 182 DWYFCPGTEQRCSVPVGPVDVQIQNSSVSPFGKLVIHSSIDYSAFKHNGTVECRAYNDVG 361
DWYFC G EQRC+ PV PVDVQ+QN SVSPFGKLV+ SSID S F+HNGTVEC+A NDVG
Sbjct: 442 DWYFCTGAEQRCTTPVSPVDVQVQNVSVSPFGKLVVQSSIDSSVFRHNGTVECKASNDVG 501
Query: 362 KSSAFFNFAFK----EQIHAHTLFTPLLIGFVIAAGMMCIIVMILTYKYLQKPMYEVQWK 529
KSSAFFNFAFK EQI AHTLFTPLLIGFV+AAG M IIVM+LTYKYLQKPMYEVQWK
Sbjct: 502 KSSAFFNFAFKGNNKEQIQAHTLFTPLLIGFVVAAGAMGIIVMVLTYKYLQKPMYEVQWK 561
Query: 530 VVEEINGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAM 709
VVEEINGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAM
Sbjct: 562 VVEEINGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAM 621
Query: 710 TVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDL 889
TVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACT+GGPTLVITEYCCYGDL
Sbjct: 622 TVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTVGGPTLVITEYCCYGDL 681
Query: 890 LNFLRRKRDSFICSKQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADK 1069
LNFLRRKRDSFI SKQE+ AEAALYKNLLHS E SC DS+NEYMDMKPGVSYVVPTK DK
Sbjct: 682 LNFLRRKRDSFIFSKQEEQAEAALYKNLLHSTEPSC-DSSNEYMDMKPGVSYVVPTKTDK 740
Query: 1070 RRSARIGSYIERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASK------------ 1213
RRSARI SYIERDVTPAIM SFSYQVAKGMAFLASK
Sbjct: 741 RRSARIDSYIERDVTPAIMEDDELALDLDDLLSFSYQVAKGMAFLASKNCIHRDLAARNI 800
Query: 1214 -----------------------------NARLPVKWMAPESIFNCVYTFESDVWSYGIF 1306
NARLPVKWMAPESIF+CVYTFESDVWSYGIF
Sbjct: 801 LLTHGRITKICDFGLARDIRNDSNYVVKGNARLPVKWMAPESIFSCVYTFESDVWSYGIF 860
Query: 1307 LWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLKRPTFK 1486
LWELFSLGSSPYPGMPVDSKFYKMIKEGFRM+SPEHAP EMYD+MKTCWDADPLKRPTFK
Sbjct: 861 LWELFSLGSSPYPGMPVDSKFYKMIKEGFRMVSPEHAPAEMYDVMKTCWDADPLKRPTFK 920
Query: 1487 QIVQLIEKQISESTNHIYSNLANCSPHRENP-AVDHSVRINSVGSSASSTQPLLVHED 1657
Q+VQLIEKQIS+ST HIYSNLANC+P+ ENP VDHSVR+NSVGSSASSTQPLLVHED
Sbjct: 921 QVVQLIEKQISDSTKHIYSNLANCNPNPENPVVVDHSVRVNSVGSSASSTQPLLVHED 978
>ref|NP_001032948.2| macrophage colony-stimulating factor 1 receptor precursor [Mus
musculus].
Length = 977
Score = 455 bits (1170), Expect = e-128
Identities = 250/578 (43%), Positives = 344/578 (59%), Gaps = 62/578 (10%)
Frame = +2
Query: 2 LTRLKGTEGGTYTFLVSNADVNSSVTLNVYVNTKPEILTHDRLMNG--MLQCVAAGFPEP 175
L R+K +E G Y + N +++T + + PE+ +NG +L C +G+P+P
Sbjct: 366 LNRVKASEAGQYFLMAQNKAGWNNLTFELTLRYPPEVSVTWMPVNGSDVLFCDVSGYPQP 425
Query: 176 TIDWYFCPGTEQRCSVPVGPVDVQIQNS------SVSPFGKLVIHSSIDYSAFKHNGTVE 337
++ W C G RC +Q+ N S PF K++I S + KHN T
Sbjct: 426 SVTWMECRGHTDRCDEAQA---LQVWNDTHPEVLSQKPFDKVIIQSQLPIGTLKHNMTYF 482
Query: 338 CRAYNDVGKSSAFF---NFAFKEQIHAHTLFTPLLIGFVIAAGMMCIIVMILTYKYLQKP 508
C+ +N VG SS +F + +Q+ +LFTP+++ + ++ +++++L YKY QKP
Sbjct: 483 CKTHNSVGNSSQYFRAVSLGQSKQLPDESLFTPVVVACMSVMSLLVLLLLLLLYKYKQKP 542
Query: 509 MYEVQWKVVEEINGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGL 688
Y+V+WK++E GN+Y +IDPTQLPY+ KWEFPRN L FGKTLGAGAFGKVVEATA+GL
Sbjct: 543 KYQVRWKIIERYEGNSYTFIDPTQLPYNEKWEFPRNNLQFGKTLGAGAFGKVVEATAFGL 602
Query: 689 IKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITE 868
K DA + VAVKMLK +AH E+EALMSELK++S+LG H NIVNLLGACT GGP LVITE
Sbjct: 603 GKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITE 662
Query: 869 YCCYGDLLNFLRRKRDSFI---CSKQEDHAEAALYKNLLHSKESSCSDS------TNEYM 1021
YCCYGDLLNFLRRK ++ + S +D + YKN+ K+ DS + Y+
Sbjct: 663 YCCYGDLLNFLRRKAEAMLGPSLSPGQDSEGDSSYKNIHLEKKYVRRDSGFSSQGVDTYV 722
Query: 1022 DMKPGVSYVVPTKADKRRSARIGSYIERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAF 1201
+M+P V + +D S+ ++D+ FS QVA+GMAF
Sbjct: 723 EMRP----VSTSSSD--------SFFKQDLD----KEASRPLELWDLLHFSSQVAQGMAF 766
Query: 1202 LASK-----------------------------------------NARLPVKWMAPESIF 1258
LASK NARLPVKWMAPESIF
Sbjct: 767 LASKNCIHRDVAARNVLLTSGHVAKIGDFGLARDIMNDSNYVVKGNARLPVKWMAPESIF 826
Query: 1259 NCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDI 1438
+CVYT +SDVWSYGI LWE+FSLG +PYPG+ V++KFYK++K+G++M P AP +Y I
Sbjct: 827 DCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNNKFYKLVKDGYQMAQPVFAPKNIYSI 886
Query: 1439 MKTCWDADPLKRPTFKQIVQLIEKQIS-ESTNHIYSNL 1549
M++CWD +P +RPTF+QI L+++Q E + Y+NL
Sbjct: 887 MQSCWDLEPTRRPTFQQICFLLQEQARLERRDQDYANL 924
>ref|NP_001076785.1| alpha-type platelet-derived growth factor receptor precursor [Mus
musculus].
Length = 1089
Score = 363 bits (931), Expect = e-100
Identities = 228/603 (37%), Positives = 319/603 (52%), Gaps = 75/603 (12%)
Frame = +2
Query: 2 LTRLKGTEGGTYTFLVSNADVNSSVTLNVYVNTKPEILT-----HDRLMNGMLQCVAAGF 166
L R K + G YT +V N D S T + IL H ++C A G
Sbjct: 381 LIRAKEEDSGHYTIIVQNEDDVKSYTFELSTLVPASILDLVDDHHGSGGGQTVRCTAEGT 440
Query: 167 PEPTIDWYFCPGTEQ---RCSVPVGPVDVQIQNSSVSPFGKLVIHSSIDYSAFKHNGTVE 337
P P IDW C ++ S V +V + + G+ + + ++ + V
Sbjct: 441 PLPEIDWMICKHIKKCNNDTSWTVLASNVSNIITELPRRGRSTVEGRVSFAKVEETIAVR 500
Query: 338 CRAYNDVGKSSAFFNFAFKEQIHAHTLFTPLLIGFVIAAGMMCIIV--MILTYKYLQKPM 511
C A N++ A + ++ A TL + L + + ++ +IV ++L + QKP
Sbjct: 501 CLAKNNLSV------VARELKLVAPTLRSELTVAAAVLVLLVIVIVSLIVLVVIWKQKPR 554
Query: 512 YEVQWKVVEEIN--GNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYG 685
YE++W+V+E I+ G+ Y+Y+DP QLPYD +WEFPR+ L G+ LG+GAFGKVVE TAYG
Sbjct: 555 YEIRWRVIESISPDGHEYIYVDPMQLPYDSRWEFPRDGLVLGRILGSGAFGKVVEGTAYG 614
Query: 686 LIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVIT 865
L +S M VAVKMLKP+A +E++ALMSELK++++LG H+NIVNLLGACT GP +IT
Sbjct: 615 LSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKSGPIYIIT 674
Query: 866 EYCCYGDLLNFLRRKRDSFICSKQEDHAEAALYKNLLHSKESSCS------DSTNEYMDM 1027
EYC YGDL+N+L + RDSF+ E + L + ES+ S ++ +YMDM
Sbjct: 675 EYCFYGDLVNYLHKNRDSFMSQHPEKPKKDLDIFGLNPADESTRSYVILSFENNGDYMDM 734
Query: 1028 KPG--VSYV-------VPTKADKRRSA--RIGSY-----IERDVTPAIMXXXXXXXXXXX 1159
K YV V +D +RS R SY ++ +V +
Sbjct: 735 KQADTTQYVPMLERKEVSKYSDIQRSLYDRPASYKKKSMLDSEVKNLLSDDDSEGLTLLD 794
Query: 1160 XXSFSYQVAKGMAFLASKN-------AR-------------------------------- 1222
SF+YQVA+GM FLASKN AR
Sbjct: 795 LLSFTYQVARGMEFLASKNCVHRDLAARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGS 854
Query: 1223 --LPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFR 1396
LPVKWMAPESIF+ +YT SDVWSYGI LWE+FSLG +PYPGM VDS FY IK G+R
Sbjct: 855 TFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMMVDSTFYNKIKSGYR 914
Query: 1397 MLSPEHAPVEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISESTNHIYSNLANCSPHREN 1576
M P+HA E+Y+IM CW+++P KRP+F + +++E + Y + ++
Sbjct: 915 MAKPDHATSEVYEIMVQCWNSEPEKRPSFYHLSEIVENLLPGQYKKSYEKIHLDFLKSDH 974
Query: 1577 PAV 1585
PAV
Sbjct: 975 PAV 977
>ref|NP_035188.2| alpha-type platelet-derived growth factor receptor precursor [Mus
musculus].
Length = 1089
Score = 363 bits (931), Expect = e-100
Identities = 228/603 (37%), Positives = 319/603 (52%), Gaps = 75/603 (12%)
Frame = +2
Query: 2 LTRLKGTEGGTYTFLVSNADVNSSVTLNVYVNTKPEILT-----HDRLMNGMLQCVAAGF 166
L R K + G YT +V N D S T + IL H ++C A G
Sbjct: 381 LIRAKEEDSGHYTIIVQNEDDVKSYTFELSTLVPASILDLVDDHHGSGGGQTVRCTAEGT 440
Query: 167 PEPTIDWYFCPGTEQ---RCSVPVGPVDVQIQNSSVSPFGKLVIHSSIDYSAFKHNGTVE 337
P P IDW C ++ S V +V + + G+ + + ++ + V
Sbjct: 441 PLPEIDWMICKHIKKCNNDTSWTVLASNVSNIITELPRRGRSTVEGRVSFAKVEETIAVR 500
Query: 338 CRAYNDVGKSSAFFNFAFKEQIHAHTLFTPLLIGFVIAAGMMCIIV--MILTYKYLQKPM 511
C A N++ A + ++ A TL + L + + ++ +IV ++L + QKP
Sbjct: 501 CLAKNNLSV------VARELKLVAPTLRSELTVAAAVLVLLVIVIVSLIVLVVIWKQKPR 554
Query: 512 YEVQWKVVEEIN--GNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYG 685
YE++W+V+E I+ G+ Y+Y+DP QLPYD +WEFPR+ L G+ LG+GAFGKVVE TAYG
Sbjct: 555 YEIRWRVIESISPDGHEYIYVDPMQLPYDSRWEFPRDGLVLGRILGSGAFGKVVEGTAYG 614
Query: 686 LIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVIT 865
L +S M VAVKMLKP+A +E++ALMSELK++++LG H+NIVNLLGACT GP +IT
Sbjct: 615 LSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKSGPIYIIT 674
Query: 866 EYCCYGDLLNFLRRKRDSFICSKQEDHAEAALYKNLLHSKESSCS------DSTNEYMDM 1027
EYC YGDL+N+L + RDSF+ E + L + ES+ S ++ +YMDM
Sbjct: 675 EYCFYGDLVNYLHKNRDSFMSQHPEKPKKDLDIFGLNPADESTRSYVILSFENNGDYMDM 734
Query: 1028 KPG--VSYV-------VPTKADKRRSA--RIGSY-----IERDVTPAIMXXXXXXXXXXX 1159
K YV V +D +RS R SY ++ +V +
Sbjct: 735 KQADTTQYVPMLERKEVSKYSDIQRSLYDRPASYKKKSMLDSEVKNLLSDDDSEGLTLLD 794
Query: 1160 XXSFSYQVAKGMAFLASKN-------AR-------------------------------- 1222
SF+YQVA+GM FLASKN AR
Sbjct: 795 LLSFTYQVARGMEFLASKNCVHRDLAARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGS 854
Query: 1223 --LPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFR 1396
LPVKWMAPESIF+ +YT SDVWSYGI LWE+FSLG +PYPGM VDS FY IK G+R
Sbjct: 855 TFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMMVDSTFYNKIKSGYR 914
Query: 1397 MLSPEHAPVEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISESTNHIYSNLANCSPHREN 1576
M P+HA E+Y+IM CW+++P KRP+F + +++E + Y + ++
Sbjct: 915 MAKPDHATSEVYEIMVQCWNSEPEKRPSFYHLSEIVENLLPGQYKKSYEKIHLDFLKSDH 974
Query: 1577 PAV 1585
PAV
Sbjct: 975 PAV 977
>ref|NP_001139740.1| beta-type platelet-derived growth factor receptor isoform 1 [Mus
musculus].
Length = 1099
Score = 345 bits (884), Expect = 1e-94
Identities = 219/611 (35%), Positives = 313/611 (51%), Gaps = 83/611 (13%)
Frame = +2
Query: 2 LTRLKGTEGGTYTFLVSNADVNSSVTLNVYVNTKPEIL----THDRLMNGMLQCVAAGFP 169
L R+K +E G YT + D ++ + VN +L +H ++C G P
Sbjct: 382 LVRVKVSEAGYYTMRAFHEDDEVQLSFKLQVNVPVRVLELSESHPANGEQTIRCRGRGMP 441
Query: 170 EPTIDWYFCPGTEQRCSVPVGPVDVQIQNSSVSPFGKLV----------IHSSIDYSAFK 319
+P + W C + RC + P + + S V + S++
Sbjct: 442 QPNVTWSTCRDLKSRCPRKLSPTPLGNSSKEESQLETNVTFWEEDQEYEVVSTLRLRHVD 501
Query: 320 HNGTVECRAYNDVGKSSAFFNFAFKEQIHAHTL-FTPLLIGFVIAAGMMCII-VMILTYK 493
+V C N +G S + + H+L F ++I ++A ++ +I ++IL
Sbjct: 502 QPLSVRCMLQNSMGGDSQ------EVTVVPHSLPFKVVVISAILALVVLTVISLIILIML 555
Query: 494 YLQKPMYEVQWKVVEEIN--GNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVV 667
+ +KP YE++WKV+E ++ G+ Y+Y+DP QLPYD WE PR++L G+TLG+GAFG+VV
Sbjct: 556 WQKKPRYEIRWKVIESVSSDGHEYIYVDPVQLPYDSTWELPRDQLVLGRTLGSGAFGQVV 615
Query: 668 EATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGG 847
EATA+GL S A M VAVKMLK +A +E++ALMSELK++S+LG H+N+VNLLGACT GG
Sbjct: 616 EATAHGLSHSQATMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNVVNLLGACTKGG 675
Query: 848 PTLVITEYCCYGDLLNFLRRKRDSFICSKQEDHA--EAALYKNL------LHSKESSCSD 1003
P +ITEYC YGDL+++L R + +F+ H A LY N L S + +
Sbjct: 676 PIYIITEYCRYGDLVDYLHRNKHTFLQRHSNKHCPPSAELYSNALPVGFSLPSHLNLTGE 735
Query: 1004 STNEYMDMK--PGVSYV--VPTKAD-KRRSARIGSYI-----------ERDVTPAIMXXX 1135
S YMDM + YV + K D K SY+ ER A +
Sbjct: 736 SDGGYMDMSKDESIDYVPMLDMKGDIKYADIESPSYMAPYDNYVPSAPERTYR-ATLIND 794
Query: 1136 XXXXXXXXXXSFSYQVAKGMAFLASKN-------AR------------------------ 1222
FSYQVA GM FLASKN AR
Sbjct: 795 SPVLSYTDLVGFSYQVANGMDFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMRD 854
Query: 1223 ----------LPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFY 1372
LP+KWMAPESIFN +YT SDVWS+GI LWE+F+LG +PYP +P++ +FY
Sbjct: 855 SNYISKGSTFLPLKWMAPESIFNSLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNDQFY 914
Query: 1373 KMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISESTNHIYSNLA 1552
IK G+RM P HA E+Y+IM+ CW+ RP F Q+V L+E+ + E Y +
Sbjct: 915 NAIKRGYRMAQPAHASDEIYEIMQKCWEEKFETRPPFSQLVLLLERLLGEGYKKKYQQVD 974
Query: 1553 NCSPHRENPAV 1585
++PA+
Sbjct: 975 EEFLRSDHPAI 985
>ref|NP_032835.2| beta-type platelet-derived growth factor receptor isoform 2 [Mus
musculus].
Length = 1098
Score = 340 bits (872), Expect = 3e-93
Identities = 219/611 (35%), Positives = 313/611 (51%), Gaps = 83/611 (13%)
Frame = +2
Query: 2 LTRLKGTEGGTYTFLVSNADVNSSVTLNVYVNTKPEIL----THDRLMNGMLQCVAAGFP 169
L R+K +E G YT + D ++ + VN +L +H ++C G P
Sbjct: 382 LVRVKVSEAGYYTMRAFHEDDEVQLSFKLQVNVPVRVLELSESHPANGEQTIRCRGRGMP 441
Query: 170 EPTIDWYFCPGTEQRCSVPVGPVDVQIQNSSVSPFGKLV----------IHSSIDYSAFK 319
+P + W C + RC + P + + S V + S++
Sbjct: 442 QPNVTWSTCRDLK-RCPRKLSPTPLGNSSKEESQLETNVTFWEEDQEYEVVSTLRLRHVD 500
Query: 320 HNGTVECRAYNDVGKSSAFFNFAFKEQIHAHTL-FTPLLIGFVIAAGMMCII-VMILTYK 493
+V C N +G S + + H+L F ++I ++A ++ +I ++IL
Sbjct: 501 QPLSVRCMLQNSMGGDSQ------EVTVVPHSLPFKVVVISAILALVVLTVISLIILIML 554
Query: 494 YLQKPMYEVQWKVVEEIN--GNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVV 667
+ +KP YE++WKV+E ++ G+ Y+Y+DP QLPYD WE PR++L G+TLG+GAFG+VV
Sbjct: 555 WQKKPRYEIRWKVIESVSSDGHEYIYVDPVQLPYDSTWELPRDQLVLGRTLGSGAFGQVV 614
Query: 668 EATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGG 847
EATA+GL S A M VAVKMLK +A +E++ALMSELK++S+LG H+N+VNLLGACT GG
Sbjct: 615 EATAHGLSHSQATMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNVVNLLGACTKGG 674
Query: 848 PTLVITEYCCYGDLLNFLRRKRDSFICSKQEDHA--EAALYKNL------LHSKESSCSD 1003
P +ITEYC YGDL+++L R + +F+ H A LY N L S + +
Sbjct: 675 PIYIITEYCRYGDLVDYLHRNKHTFLQRHSNKHCPPSAELYSNALPVGFSLPSHLNLTGE 734
Query: 1004 STNEYMDMK--PGVSYV--VPTKAD-KRRSARIGSYI-----------ERDVTPAIMXXX 1135
S YMDM + YV + K D K SY+ ER A +
Sbjct: 735 SDGGYMDMSKDESIDYVPMLDMKGDIKYADIESPSYMAPYDNYVPSAPERTYR-ATLIND 793
Query: 1136 XXXXXXXXXXSFSYQVAKGMAFLASKN-------AR------------------------ 1222
FSYQVA GM FLASKN AR
Sbjct: 794 SPVLSYTDLVGFSYQVANGMDFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMRD 853
Query: 1223 ----------LPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFY 1372
LP+KWMAPESIFN +YT SDVWS+GI LWE+F+LG +PYP +P++ +FY
Sbjct: 854 SNYISKGSTFLPLKWMAPESIFNSLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNDQFY 913
Query: 1373 KMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISESTNHIYSNLA 1552
IK G+RM P HA E+Y+IM+ CW+ RP F Q+V L+E+ + E Y +
Sbjct: 914 NAIKRGYRMAQPAHASDEIYEIMQKCWEEKFETRPPFSQLVLLLERLLGEGYKKKYQQVD 973
Query: 1553 NCSPHRENPAV 1585
++PA+
Sbjct: 974 EEFLRSDHPAI 984
>ref|NP_034359.2| FL cytokine receptor [Mus musculus].
Length = 1000
Score = 330 bits (845), Expect = 4e-90
Identities = 203/587 (34%), Positives = 297/587 (50%), Gaps = 51/587 (8%)
Frame = +2
Query: 29 GTYTFLVSNADVNSSVTLNVYVNTKPEILTHDRLMNGMLQCVAAGFPEPTIDWYFCPGTE 208
G Y F N D + + + KP++L + C + G+P P+ W C
Sbjct: 415 GEYIFYAENDDAQFTKMFTLNIRKKPQVLANASASQA--SCSSDGYPLPSWTWKKCSDKS 472
Query: 209 QRCSVPVGPVDVQIQNSSVSPFGKLVIHSSIDYSAFKHNGTVECRAYNDVGKS--SAFFN 382
C+ + P V + ++ FG+ V S+++ S V+C AYN +G S + F N
Sbjct: 473 PNCTEEI-PEGVWNKKANRKVFGQWVSSSTLNMSEAGKGLLVKCCAYNSMGTSCETIFLN 531
Query: 383 ----FAFKEQIHAHTLFTPLLIGFVIAAGMMCIIVMILTYKYLQKPMYEVQWKVVEEIN- 547
F F + + L + F++ ++++++ +KY ++ YE Q ++++
Sbjct: 532 SPGPFPFIQDNISFYATIGLCLPFIV------VLIVLICHKYKKQFRYESQLQMIQVTGP 585
Query: 548 -GNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVK 724
N Y Y+D YD KWEFPR L FGK LG+GAFG+V+ ATAYG+ K+ ++ VAVK
Sbjct: 586 LDNEYFYVDFRDYEYDLKWEFPRENLEFGKVLGSGAFGRVMNATAYGISKTGVSIQVAVK 645
Query: 725 MLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLR 904
MLK A E+EALMSELK++++LG+H NIVNLLGACT+ GP +I EYCCYGDLLN+LR
Sbjct: 646 MLKEKADSCEKEALMSELKMMTHLGHHDNIVNLLGACTLSGPVYLIFEYCCYGDLLNYLR 705
Query: 905 RKRDSFICSKQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADKRRSAR 1084
KR+ F + E E S+ S + + + P + + + S
Sbjct: 706 SKREKFHRTWTEIFKEHNFSFYPTFQAHSNSSMPGSREVQLHPPLDQLSGFNGNLIHSED 765
Query: 1085 IGSYIERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASK----------------- 1213
Y + F+YQVAKGM FL K
Sbjct: 766 EIEYENQKRLAEEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARNVLVTHG 825
Query: 1214 ------------------------NARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELF 1321
NARLPVKWMAPES+F +YT +SDVWSYGI LWE+F
Sbjct: 826 KVVKICDFGLARDILSDSSYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIF 885
Query: 1322 SLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLKRPTFKQIVQL 1501
SLG +PYPG+PVD+ FYK+I+ GF+M P +A +Y +M++CW D KRP+F +
Sbjct: 886 SLGVNPYPGIPVDANFYKLIQSGFKMEQPFYATEGIYFVMQSCWAFDSRKRPSFPNLTSF 945
Query: 1502 IEKQISESTNHIYSNLANCSPHRENPAVDHSVR--INSVGSSASSTQ 1636
+ Q++E+ +Y N+ P E+P++ + R GS S Q
Sbjct: 946 LGCQLAEAEEAMYQNMGGNVP--EHPSIYQNRRPLSREAGSEPPSPQ 990
>ref|NP_034337.2| fibroblast growth factor receptor 2 isoform IIIc [Mus musculus].
Length = 840
Score = 227 bits (578), Expect = 4e-59
Identities = 125/326 (38%), Positives = 188/326 (57%), Gaps = 2/326 (0%)
Frame = +2
Query: 578 QLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDA--AMTVAVKMLKPSAHLT 751
+LP D KWEFPR++L+ GK LG G FG+VV A A G+ K A+TVAVKMLK A
Sbjct: 486 ELPEDPKWEFPRDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEK 545
Query: 752 EREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICS 931
+ L+SE++++ +G H NI+NLLGACT GP VI EY G+L +LR +R +
Sbjct: 546 DLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGM-- 603
Query: 932 KQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADKRRSARIGSYIERDV 1111
E + N + ++ + D + + G+ Y+ K I RD+
Sbjct: 604 ------EYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKC-----------IHRDL 646
Query: 1112 TPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASKNARLPVKWMAPESIFNCVYTFESDVW 1291
+ + + + + N RLPVKWMAPE++F+ VYT +SDVW
Sbjct: 647 AARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVW 706
Query: 1292 SYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLK 1471
S+G+ +WE+F+LG SPYPG+PV+ + +K++KEG RM P + E+Y +M+ CW A P +
Sbjct: 707 SFGVLMWEIFTLGGSPYPGIPVE-ELFKLLKEGHRMDKPTNCTNELYMMMRDCWHAVPSQ 765
Query: 1472 RPTFKQIVQLIEKQISESTNHIYSNL 1549
RPTFKQ+V+ +++ ++ +TN Y +L
Sbjct: 766 RPTFKQLVEDLDRILTLTTNEEYLDL 791
>ref|NP_963895.2| fibroblast growth factor receptor 2 isoform IIIb [Mus musculus].
Length = 726
Score = 227 bits (578), Expect = 4e-59
Identities = 125/326 (38%), Positives = 188/326 (57%), Gaps = 2/326 (0%)
Frame = +2
Query: 578 QLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDA--AMTVAVKMLKPSAHLT 751
+LP D KWEFPR++L+ GK LG G FG+VV A A G+ K A+TVAVKMLK A
Sbjct: 372 ELPEDPKWEFPRDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEK 431
Query: 752 EREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICS 931
+ L+SE++++ +G H NI+NLLGACT GP VI EY G+L +LR +R +
Sbjct: 432 DLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGM-- 489
Query: 932 KQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADKRRSARIGSYIERDV 1111
E + N + ++ + D + + G+ Y+ K I RD+
Sbjct: 490 ------EYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKC-----------IHRDL 532
Query: 1112 TPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASKNARLPVKWMAPESIFNCVYTFESDVW 1291
+ + + + + N RLPVKWMAPE++F+ VYT +SDVW
Sbjct: 533 AARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVW 592
Query: 1292 SYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLK 1471
S+G+ +WE+F+LG SPYPG+PV+ + +K++KEG RM P + E+Y +M+ CW A P +
Sbjct: 593 SFGVLMWEIFTLGGSPYPGIPVE-ELFKLLKEGHRMDKPTNCTNELYMMMRDCWHAVPSQ 651
Query: 1472 RPTFKQIVQLIEKQISESTNHIYSNL 1549
RPTFKQ+V+ +++ ++ +TN Y +L
Sbjct: 652 RPTFKQLVEDLDRILTLTTNEEYLDL 677
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 80,051,084
Number of extensions: 2144879
Number of successful extensions: 8149
Number of sequences better than 1.0e-05: 164
Number of HSP's gapped: 7761
Number of HSP's successfully gapped: 233
Length of query: 788
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 679
Effective length of database: 12,343,635
Effective search space: 8381328165
Effective search space used: 8381328165
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012635
(2366 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001087241.1| mast/stem cell growth factor receptor isofor... 1019 0.0
Alignment gi|NP_000213.1| mast/stem cell growth factor receptor isoform 1... 1014 0.0
Alignment gi|NP_005202.2| macrophage colony-stimulating factor 1 receptor... 453 e-127
Alignment gi|NP_006197.1| alpha-type platelet-derived growth factor recep... 363 e-100
Alignment gi|NP_002600.1| beta-type platelet-derived growth factor recept... 337 2e-92
Alignment gi|NP_001138390.1| fibroblast growth factor receptor 2 isoform ... 227 3e-59
Alignment gi|NP_001138389.1| fibroblast growth factor receptor 2 isoform ... 227 3e-59
Alignment gi|NP_001138388.1| fibroblast growth factor receptor 2 isoform ... 227 3e-59
Alignment gi|NP_001138386.1| fibroblast growth factor receptor 2 isoform ... 227 3e-59
Alignment gi|NP_000132.3| fibroblast growth factor receptor 2 isoform 1 p... 227 3e-59
>ref|NP_001087241.1| mast/stem cell growth factor receptor isoform 2 precursor [Homo
sapiens].
Length = 972
Score = 1019 bits (2636), Expect = 0.0
Identities = 507/593 (85%), Positives = 522/593 (88%), Gaps = 41/593 (6%)
Frame = +2
Query: 2 LTRLKGTEGGTYTFLVSNADVNSSVTLNVYVNTKPEILTHDRLMNGMLQCVAAGFPEPTI 181
LTRLKGTEGGTYTFLVSN+DVN+++ NVYVNTKPEILT+DRL+NGMLQCVAAGFPEPTI
Sbjct: 379 LTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILTYDRLVNGMLQCVAAGFPEPTI 438
Query: 182 DWYFCPGTEQRCSVPVGPVDVQIQNSSVSPFGKLVIHSSIDYSAFKHNGTVECRAYNDVG 361
DWYFCPGTEQRCS V PVDVQ NSS PFGKLV+ SSID SAFKHNGTVEC+AYNDVG
Sbjct: 439 DWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVG 498
Query: 362 KSSAFFNFAFKEQIHAHTLFTPLLIGFVIAAGMMCIIVMILTYKYLQKPMYEVQWKVVEE 541
K+SA+FNFAFKEQIH HTLFTPLLIGFVI AGMMCIIVMILTYKYLQKPMYEVQWKVVEE
Sbjct: 499 KTSAYFNFAFKEQIHPHTLFTPLLIGFVIVAGMMCIIVMILTYKYLQKPMYEVQWKVVEE 558
Query: 542 INGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAV 721
INGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAV
Sbjct: 559 INGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAV 618
Query: 722 KMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFL 901
KMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFL
Sbjct: 619 KMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFL 678
Query: 902 RRKRDSFICSKQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADKRRSA 1081
RRKRDSFICSKQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADKRRS
Sbjct: 679 RRKRDSFICSKQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADKRRSV 738
Query: 1082 RIGSYIERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASK---------------- 1213
RIGSYIERDVTPAIM SFSYQVAKGMAFLASK
Sbjct: 739 RIGSYIERDVTPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTH 798
Query: 1214 -------------------------NARLPVKWMAPESIFNCVYTFESDVWSYGIFLWEL 1318
NARLPVKWMAPESIFNCVYTFESDVWSYGIFLWEL
Sbjct: 799 GRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWEL 858
Query: 1319 FSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLKRPTFKQIVQ 1498
FSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAP EMYDIMKTCWDADPLKRPTFKQIVQ
Sbjct: 859 FSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQ 918
Query: 1499 LIEKQISESTNHIYSNLANCSPHRENPAVDHSVRINSVGSSASSTQPLLVHED 1657
LIEKQISESTNHIYSNLANCSP+R+ P VDHSVRINSVGS+ASS+QPLLVH+D
Sbjct: 919 LIEKQISESTNHIYSNLANCSPNRQKPVVDHSVRINSVGSTASSSQPLLVHDD 971
>ref|NP_000213.1| mast/stem cell growth factor receptor isoform 1 precursor [Homo
sapiens].
Length = 976
Score = 1014 bits (2621), Expect = 0.0
Identities = 507/597 (84%), Positives = 522/597 (87%), Gaps = 45/597 (7%)
Frame = +2
Query: 2 LTRLKGTEGGTYTFLVSNADVNSSVTLNVYVNTKPEILTHDRLMNGMLQCVAAGFPEPTI 181
LTRLKGTEGGTYTFLVSN+DVN+++ NVYVNTKPEILT+DRL+NGMLQCVAAGFPEPTI
Sbjct: 379 LTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILTYDRLVNGMLQCVAAGFPEPTI 438
Query: 182 DWYFCPGTEQRCSVPVGPVDVQIQNSSVSPFGKLVIHSSIDYSAFKHNGTVECRAYNDVG 361
DWYFCPGTEQRCS V PVDVQ NSS PFGKLV+ SSID SAFKHNGTVEC+AYNDVG
Sbjct: 439 DWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVG 498
Query: 362 KSSAFFNFAFK----EQIHAHTLFTPLLIGFVIAAGMMCIIVMILTYKYLQKPMYEVQWK 529
K+SA+FNFAFK EQIH HTLFTPLLIGFVI AGMMCIIVMILTYKYLQKPMYEVQWK
Sbjct: 499 KTSAYFNFAFKGNNKEQIHPHTLFTPLLIGFVIVAGMMCIIVMILTYKYLQKPMYEVQWK 558
Query: 530 VVEEINGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAM 709
VVEEINGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAM
Sbjct: 559 VVEEINGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAM 618
Query: 710 TVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDL 889
TVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDL
Sbjct: 619 TVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDL 678
Query: 890 LNFLRRKRDSFICSKQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADK 1069
LNFLRRKRDSFICSKQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADK
Sbjct: 679 LNFLRRKRDSFICSKQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADK 738
Query: 1070 RRSARIGSYIERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASK------------ 1213
RRS RIGSYIERDVTPAIM SFSYQVAKGMAFLASK
Sbjct: 739 RRSVRIGSYIERDVTPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNI 798
Query: 1214 -----------------------------NARLPVKWMAPESIFNCVYTFESDVWSYGIF 1306
NARLPVKWMAPESIFNCVYTFESDVWSYGIF
Sbjct: 799 LLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIF 858
Query: 1307 LWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLKRPTFK 1486
LWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAP EMYDIMKTCWDADPLKRPTFK
Sbjct: 859 LWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFK 918
Query: 1487 QIVQLIEKQISESTNHIYSNLANCSPHRENPAVDHSVRINSVGSSASSTQPLLVHED 1657
QIVQLIEKQISESTNHIYSNLANCSP+R+ P VDHSVRINSVGS+ASS+QPLLVH+D
Sbjct: 919 QIVQLIEKQISESTNHIYSNLANCSPNRQKPVVDHSVRINSVGSTASSSQPLLVHDD 975
>ref|NP_005202.2| macrophage colony-stimulating factor 1 receptor precursor [Homo
sapiens].
Length = 972
Score = 453 bits (1166), Expect = e-127
Identities = 257/580 (44%), Positives = 336/580 (57%), Gaps = 60/580 (10%)
Frame = +2
Query: 2 LTRLKGTEGGTYTFLVSNADVNSSVTLNVYVNTKPEILTHDRLMNGM--LQCVAAGFPEP 175
L RLK +E G Y+FL N ++T + + PE+ +NG L C A+G+P+P
Sbjct: 368 LPRLKPSEAGRYSFLARNPGGWRALTFELTLRYPPEVSVIWTFINGSGTLLCAASGYPQP 427
Query: 176 TIDWYFCPGTEQRCS-VPVGPV--DVQIQNSSVSPFGKLVIHSSIDYSAFKHNGTVECRA 346
+ W C G RC V V D + S PF K+ + S + +HN T ECRA
Sbjct: 428 NVTWLQCSGHTDRCDEAQVLQVWDDPYPEVLSQEPFHKVTVQSLLTVETLEHNQTYECRA 487
Query: 347 YNDVGKSSAFFNFAFKEQIHAHT----LFTPLLIGFVIAAGMMCIIVMILTYKYLQKPMY 514
+N VG S F H H LFTP+++ + ++ +++++L YKY QKP Y
Sbjct: 488 HNSVGSGSWAF-IPISAGAHTHPPDEFLFTPVVVACMSIMALLLLLLLLLLYKYKQKPKY 546
Query: 515 EVQWKVVEEINGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIK 694
+V+WK++E GN+Y +IDPTQLPY+ KWEFPRN L FGKTLGAGAFGKVVEATA+GL K
Sbjct: 547 QVRWKIIESYEGNSYTFIDPTQLPYNEKWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGK 606
Query: 695 SDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYC 874
DA + VAVKMLK +AH E+EALMSELK++S+LG H NIVNLLGACT GGP LVITEYC
Sbjct: 607 EDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEYC 666
Query: 875 CYGDLLNFLRRKRDSFI---CSKQEDHAEAALYKNLLHSKESSCSDS------TNEYMDM 1027
CYGDLLNFLRRK ++ + S +D YKN+ K+ DS + Y++M
Sbjct: 667 CYGDLLNFLRRKAEAMLGPSLSPGQDPEGGVDYKNIHLEKKYVRRDSGFSSQGVDTYVEM 726
Query: 1028 KPGVSYVVPTKADKRRSARIGSYIERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLA 1207
+P V T ++ S+ E+D+ FS QVA+GMAFLA
Sbjct: 727 RP-----VSTSSN-------DSFSEQDLD----KEDGRPLELRDLLHFSSQVAQGMAFLA 770
Query: 1208 SK-----------------------------------------NARLPVKWMAPESIFNC 1264
SK NARLPVKWMAPESIF+C
Sbjct: 771 SKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDC 830
Query: 1265 VYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMK 1444
VYT +SDVWSYGI LWE+FSLG +PYPG+ V+SKFYK++K+G++M P AP +Y IM+
Sbjct: 831 VYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKFYKLVKDGYQMAQPAFAPKNIYSIMQ 890
Query: 1445 TCWDADPLKRPTFKQIVQLIEKQISES-TNHIYSNLANCS 1561
CW +P RPTF+QI +++Q E Y+NL + S
Sbjct: 891 ACWALEPTHRPTFQQICSFLQEQAQEDRRERDYTNLPSSS 930
>ref|NP_006197.1| alpha-type platelet-derived growth factor receptor precursor [Homo
sapiens].
Length = 1089
Score = 363 bits (932), Expect = e-100
Identities = 224/601 (37%), Positives = 315/601 (52%), Gaps = 73/601 (12%)
Frame = +2
Query: 2 LTRLKGTEGGTYTFLVSNADVNSSVTLNVYVNTKPEILT-----HDRLMNGMLQCVAAGF 166
L R K + G YT + N D S T + IL H ++C A G
Sbjct: 381 LIRAKEEDSGHYTIVAQNEDAVKSYTFELLTQVPSSILDLVDDHHGSTGGQTVRCTAEGT 440
Query: 167 PEPTIDWYFCPGTEQ---RCSVPVGPVDVQIQNSSVSPFGKLVIHSSIDYSAFKHNGTVE 337
P P I+W C ++ S + +V + + + + + ++ + V
Sbjct: 441 PLPDIEWMICKDIKKCNNETSWTILANNVSNIITEIHSRDRSTVEGRVTFAKVEETIAVR 500
Query: 338 CRAYNDVGKSSAFFNFAFKEQIHAHTLFTPLLIGFVIAAGMMCIIVMILTYKYLQKPMYE 517
C A N +G + T+ +L+ VI ++ +IV+++ +K QKP YE
Sbjct: 501 CLAKNLLGAENRELKLVAPTLRSELTVAAAVLVLLVIV--IISLIVLVVIWK--QKPRYE 556
Query: 518 VQWKVVEEIN--GNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLI 691
++W+V+E I+ G+ Y+Y+DP QLPYD +WEFPR+ L G+ LG+GAFGKVVE TAYGL
Sbjct: 557 IRWRVIESISPDGHEYIYVDPMQLPYDSRWEFPRDGLVLGRVLGSGAFGKVVEGTAYGLS 616
Query: 692 KSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEY 871
+S M VAVKMLKP+A +E++ALMSELK++++LG H+NIVNLLGACT GP +ITEY
Sbjct: 617 RSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKSGPIYIITEY 676
Query: 872 CCYGDLLNFLRRKRDSFICSKQEDHAEAALYKNLLHSKESSCS------DSTNEYMDMKP 1033
C YGDL+N+L + RDSF+ E + L + ES+ S ++ +YMDMK
Sbjct: 677 CFYGDLVNYLHKNRDSFLSHHPEKPKKELDIFGLNPADESTRSYVILSFENNGDYMDMKQ 736
Query: 1034 G--VSYV-------VPTKADKRRSA--RIGSY-----IERDVTPAIMXXXXXXXXXXXXX 1165
YV V +D +RS R SY ++ +V +
Sbjct: 737 ADTTQYVPMLERKEVSKYSDIQRSLYDRPASYKKKSMLDSEVKNLLSDDNSEGLTLLDLL 796
Query: 1166 SFSYQVAKGMAFLASKN-------AR---------------------------------- 1222
SF+YQVA+GM FLASKN AR
Sbjct: 797 SFTYQVARGMEFLASKNCVHRDLAARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGSTF 856
Query: 1223 LPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRML 1402
LPVKWMAPESIF+ +YT SDVWSYGI LWE+FSLG +PYPGM VDS FY IK G+RM
Sbjct: 857 LPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMMVDSTFYNKIKSGYRMA 916
Query: 1403 SPEHAPVEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISESTNHIYSNLANCSPHRENPA 1582
P+HA E+Y+IM CW+++P KRP+F + +++E + Y + ++PA
Sbjct: 917 KPDHATSEVYEIMVKCWNSEPEKRPSFYHLSEIVENLLPGQYKKSYEKIHLDFLKSDHPA 976
Query: 1583 V 1585
V
Sbjct: 977 V 977
>ref|NP_002600.1| beta-type platelet-derived growth factor receptor precursor [Homo
sapiens].
Length = 1106
Score = 337 bits (865), Expect = 2e-92
Identities = 219/610 (35%), Positives = 314/610 (51%), Gaps = 82/610 (13%)
Frame = +2
Query: 2 LTRLKGTEGGTYTFLVSNADVNSSVTLNVYVNTKPEIL----THDRLMNGMLQCVAAGFP 169
L R+K E G YT + D ++ + +N +L +H ++C G P
Sbjct: 383 LVRVKVAEAGHYTMRAFHEDAEVQLSFQLQINVPVRVLELSESHPDSGEQTVRCRGRGMP 442
Query: 170 EPTIDWYFCPGTEQRCSVPVGPVDVQIQNSSVSPFGKLVIH----------SSIDYSAFK 319
+P I W C + RC + P + + S V + S++
Sbjct: 443 QPNIIWSACRDLK-RCPRELPPTLLGNSSEEESQLETNVTYWEEEQEFEVVSTLRLQHVD 501
Query: 320 HNGTVECRAYNDVGKSSAFFNFAFKEQIHAHTL-FTPLLIGFVIAAGMMCII-VMILTYK 493
+V C N VG+ + + + H+L F ++I ++A ++ II ++IL
Sbjct: 502 RPLSVRCTLRNAVGQDTQ------EVIVVPHSLPFKVVVISAILALVVLTIISLIILIML 555
Query: 494 YLQKPMYEVQWKVVEEIN--GNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVV 667
+ +KP YE++WKV+E ++ G+ Y+Y+DP QLPYD WE PR++L G+TLG+GAFG+VV
Sbjct: 556 WQKKPRYEIRWKVIESVSSDGHEYIYVDPMQLPYDSTWELPRDQLVLGRTLGSGAFGQVV 615
Query: 668 EATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGG 847
EATA+GL S A M VAVKMLK +A +E++ALMSELK++S+LG H+N+VNLLGACT GG
Sbjct: 616 EATAHGLSHSQATMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNVVNLLGACTKGG 675
Query: 848 PTLVITEYCCYGDLLNFLRRKRDSFIC--SKQEDHAEAALYKNLLH------SKESSCSD 1003
P +ITEYC YGDL+++L R + +F+ S + A LY N L S S +
Sbjct: 676 PIYIITEYCRYGDLVDYLHRNKHTFLQHHSDKRRPPSAELYSNALPVGLPLPSHVSLTGE 735
Query: 1004 STNEYMDMKP--GVSYV--VPTKADKRRS--------ARIGSYIE---RDVTPAIMXXXX 1138
S YMDM V YV + K D + + A +Y+ A +
Sbjct: 736 SDGGYMDMSKDESVDYVPMLDMKGDVKYADIESSNYMAPYDNYVPSAPERTCRATLINES 795
Query: 1139 XXXXXXXXXSFSYQVAKGMAFLASKN-------AR------------------------- 1222
FSYQVA GM FLASKN AR
Sbjct: 796 PVLSYMDLVGFSYQVANGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMRDS 855
Query: 1223 ---------LPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYK 1375
LP+KWMAPESIFN +YT SDVWS+GI LWE+F+LG +PYP +P++ +FY
Sbjct: 856 NYISKGSTFLPLKWMAPESIFNSLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNEQFYN 915
Query: 1376 MIKEGFRMLSPEHAPVEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISESTNHIYSNLAN 1555
IK G+RM P HA E+Y+IM+ CW+ RP F Q+V L+E+ + E Y +
Sbjct: 916 AIKRGYRMAQPAHASDEIYEIMQKCWEEKFEIRPPFSQLVLLLERLLGEGYKKKYQQVDE 975
Query: 1556 CSPHRENPAV 1585
++PA+
Sbjct: 976 EFLRSDHPAI 985
>ref|NP_001138390.1| fibroblast growth factor receptor 2 isoform 8 precursor [Homo
sapiens].
Length = 704
Score = 227 bits (579), Expect = 3e-59
Identities = 125/327 (38%), Positives = 189/327 (57%), Gaps = 2/327 (0%)
Frame = +2
Query: 578 QLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDA--AMTVAVKMLKPSAHLT 751
+LP D KWEFPR++L+ GK LG G FG+VV A A G+ K A+TVAVKMLK A
Sbjct: 350 ELPEDPKWEFPRDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEK 409
Query: 752 EREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICS 931
+ L+SE++++ +G H NI+NLLGACT GP VI EY G+L +LR +R +
Sbjct: 410 DLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGM-- 467
Query: 932 KQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADKRRSARIGSYIERDV 1111
E + N + ++ + D + + G+ Y+ K I RD+
Sbjct: 468 ------EYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKC-----------IHRDL 510
Query: 1112 TPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASKNARLPVKWMAPESIFNCVYTFESDVW 1291
+ + + + + N RLPVKWMAPE++F+ VYT +SDVW
Sbjct: 511 AARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVW 570
Query: 1292 SYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLK 1471
S+G+ +WE+F+LG SPYPG+PV+ + +K++KEG RM P + E+Y +M+ CW A P +
Sbjct: 571 SFGVLMWEIFTLGGSPYPGIPVE-ELFKLLKEGHRMDKPANCTNELYMMMRDCWHAVPSQ 629
Query: 1472 RPTFKQIVQLIEKQISESTNHIYSNLA 1552
RPTFKQ+V+ +++ ++ +TN Y +L+
Sbjct: 630 RPTFKQLVEDLDRILTLTTNEEYLDLS 656
>ref|NP_001138389.1| fibroblast growth factor receptor 2 isoform 7 precursor [Homo
sapiens].
Length = 705
Score = 227 bits (579), Expect = 3e-59
Identities = 125/327 (38%), Positives = 189/327 (57%), Gaps = 2/327 (0%)
Frame = +2
Query: 578 QLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDA--AMTVAVKMLKPSAHLT 751
+LP D KWEFPR++L+ GK LG G FG+VV A A G+ K A+TVAVKMLK A
Sbjct: 351 ELPEDPKWEFPRDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEK 410
Query: 752 EREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICS 931
+ L+SE++++ +G H NI+NLLGACT GP VI EY G+L +LR +R +
Sbjct: 411 DLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGM-- 468
Query: 932 KQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADKRRSARIGSYIERDV 1111
E + N + ++ + D + + G+ Y+ K I RD+
Sbjct: 469 ------EYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKC-----------IHRDL 511
Query: 1112 TPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASKNARLPVKWMAPESIFNCVYTFESDVW 1291
+ + + + + N RLPVKWMAPE++F+ VYT +SDVW
Sbjct: 512 AARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVW 571
Query: 1292 SYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLK 1471
S+G+ +WE+F+LG SPYPG+PV+ + +K++KEG RM P + E+Y +M+ CW A P +
Sbjct: 572 SFGVLMWEIFTLGGSPYPGIPVE-ELFKLLKEGHRMDKPANCTNELYMMMRDCWHAVPSQ 630
Query: 1472 RPTFKQIVQLIEKQISESTNHIYSNLA 1552
RPTFKQ+V+ +++ ++ +TN Y +L+
Sbjct: 631 RPTFKQLVEDLDRILTLTTNEEYLDLS 657
>ref|NP_001138388.1| fibroblast growth factor receptor 2 isoform 6 precursor [Homo
sapiens].
Length = 706
Score = 227 bits (579), Expect = 3e-59
Identities = 125/327 (38%), Positives = 189/327 (57%), Gaps = 2/327 (0%)
Frame = +2
Query: 578 QLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDA--AMTVAVKMLKPSAHLT 751
+LP D KWEFPR++L+ GK LG G FG+VV A A G+ K A+TVAVKMLK A
Sbjct: 352 ELPEDPKWEFPRDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEK 411
Query: 752 EREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICS 931
+ L+SE++++ +G H NI+NLLGACT GP VI EY G+L +LR +R +
Sbjct: 412 DLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGM-- 469
Query: 932 KQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADKRRSARIGSYIERDV 1111
E + N + ++ + D + + G+ Y+ K I RD+
Sbjct: 470 ------EYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKC-----------IHRDL 512
Query: 1112 TPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASKNARLPVKWMAPESIFNCVYTFESDVW 1291
+ + + + + N RLPVKWMAPE++F+ VYT +SDVW
Sbjct: 513 AARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVW 572
Query: 1292 SYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLK 1471
S+G+ +WE+F+LG SPYPG+PV+ + +K++KEG RM P + E+Y +M+ CW A P +
Sbjct: 573 SFGVLMWEIFTLGGSPYPGIPVE-ELFKLLKEGHRMDKPANCTNELYMMMRDCWHAVPSQ 631
Query: 1472 RPTFKQIVQLIEKQISESTNHIYSNLA 1552
RPTFKQ+V+ +++ ++ +TN Y +L+
Sbjct: 632 RPTFKQLVEDLDRILTLTTNEEYLDLS 658
>ref|NP_001138386.1| fibroblast growth factor receptor 2 isoform 4 precursor [Homo
sapiens].
Length = 709
Score = 227 bits (579), Expect = 3e-59
Identities = 125/327 (38%), Positives = 189/327 (57%), Gaps = 2/327 (0%)
Frame = +2
Query: 578 QLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDA--AMTVAVKMLKPSAHLT 751
+LP D KWEFPR++L+ GK LG G FG+VV A A G+ K A+TVAVKMLK A
Sbjct: 355 ELPEDPKWEFPRDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEK 414
Query: 752 EREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICS 931
+ L+SE++++ +G H NI+NLLGACT GP VI EY G+L +LR +R +
Sbjct: 415 DLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGM-- 472
Query: 932 KQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADKRRSARIGSYIERDV 1111
E + N + ++ + D + + G+ Y+ K I RD+
Sbjct: 473 ------EYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKC-----------IHRDL 515
Query: 1112 TPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASKNARLPVKWMAPESIFNCVYTFESDVW 1291
+ + + + + N RLPVKWMAPE++F+ VYT +SDVW
Sbjct: 516 AARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVW 575
Query: 1292 SYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLK 1471
S+G+ +WE+F+LG SPYPG+PV+ + +K++KEG RM P + E+Y +M+ CW A P +
Sbjct: 576 SFGVLMWEIFTLGGSPYPGIPVE-ELFKLLKEGHRMDKPANCTNELYMMMRDCWHAVPSQ 634
Query: 1472 RPTFKQIVQLIEKQISESTNHIYSNLA 1552
RPTFKQ+V+ +++ ++ +TN Y +L+
Sbjct: 635 RPTFKQLVEDLDRILTLTTNEEYLDLS 661
>ref|NP_000132.3| fibroblast growth factor receptor 2 isoform 1 precursor [Homo
sapiens].
Length = 821
Score = 227 bits (579), Expect = 3e-59
Identities = 125/327 (38%), Positives = 189/327 (57%), Gaps = 2/327 (0%)
Frame = +2
Query: 578 QLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDA--AMTVAVKMLKPSAHLT 751
+LP D KWEFPR++L+ GK LG G FG+VV A A G+ K A+TVAVKMLK A
Sbjct: 467 ELPEDPKWEFPRDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEK 526
Query: 752 EREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICS 931
+ L+SE++++ +G H NI+NLLGACT GP VI EY G+L +LR +R +
Sbjct: 527 DLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGM-- 584
Query: 932 KQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADKRRSARIGSYIERDV 1111
E + N + ++ + D + + G+ Y+ K I RD+
Sbjct: 585 ------EYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKC-----------IHRDL 627
Query: 1112 TPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASKNARLPVKWMAPESIFNCVYTFESDVW 1291
+ + + + + N RLPVKWMAPE++F+ VYT +SDVW
Sbjct: 628 AARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVW 687
Query: 1292 SYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLK 1471
S+G+ +WE+F+LG SPYPG+PV+ + +K++KEG RM P + E+Y +M+ CW A P +
Sbjct: 688 SFGVLMWEIFTLGGSPYPGIPVE-ELFKLLKEGHRMDKPANCTNELYMMMRDCWHAVPSQ 746
Query: 1472 RPTFKQIVQLIEKQISESTNHIYSNLA 1552
RPTFKQ+V+ +++ ++ +TN Y +L+
Sbjct: 747 RPTFKQLVEDLDRILTLTTNEEYLDLS 773
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 93,987,288
Number of extensions: 2532481
Number of successful extensions: 9818
Number of sequences better than 1.0e-05: 197
Number of HSP's gapped: 9326
Number of HSP's successfully gapped: 280
Length of query: 788
Length of database: 18,297,164
Length adjustment: 111
Effective length of query: 677
Effective length of database: 14,638,160
Effective search space: 9910034320
Effective search space used: 9910034320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012635
(2366 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr08 1429 0.0
Sscrofa_Chr02 62 1e-06
>Sscrofa_Chr08
|| Length = 148491826
Score = 1429 bits (721), Expect = 0.0
Identities = 795/832 (95%)
Strand = Plus / Plus
Query: 1535 atttattccaacttagcgaactgcagcccccaccgggagaaccccgcggtggatcattct 1594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43600475 atttattccaacttagcgaactgcagcccccaccgggagaaccccgcggtggatcattct 43600534
Query: 1595 gtgcggatcaactccgtgggcagcagtgcctcctccacgcagccgctgcttgtccacgaa 1654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43600535 gtgcggatcaactccgtgggcagcagtgcctcctccacgcagccgctgcttgtccacgaa 43600594
Query: 1655 gacgtctgaagcagaatgggtgtccnnnnnnnnnnnnnnnnnnnctcccccacagcaccg 1714
||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 43600595 gacgtctgaagcagaatgggtgtccggggtggggggtgggggggctcccccacagcaccg 43600654
Query: 1715 accgactgccattctttttggttttcataatggttattttgtttcccttcaacttgcatc 1774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43600655 accgactgccattctttttggttttcataatggttattttgtttcccttcaacttgcatc 43600714
Query: 1775 ctactccagggtagtggatgctccgctgtaatcctctttacgagcacactttagtggcca 1834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43600715 ctactccagggtagtggatgctccgctgtaatcctctttacgagcacactttagtggcca 43600774
Query: 1835 atgatttctgtcatcagctgccattgagctgtatatgttcccaatagcacgctagccccc 1894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43600775 atgatttctgtcatcagctgccattgagctgtatatgttcccaatagcacgctagccccc 43600834
Query: 1895 attaacggagagcattcagacttagggaagaggagggtaggacgggctggacaccccagg 1954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43600835 attaacggagagcattcagacttagggaagaggagggtaggacgggctggacaccccagg 43600894
Query: 1955 tccttgacaagtcttctccagtttctgtccaataagtgttgtaatggtttatttgagcac 2014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43600895 tccttgacaagtcttctccagtttctgtccaataagtgttgtaatggtttatttgagcac 43600954
Query: 2015 ctggctgtcgtcacctccggtccttgtcatcatctgtaacaatnnnnnnnnnnnnnnnnn 2074
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43600955 ctggctgtcgtcacctccggtccttgtcatcatctgtaacaatatgatgatgatgatgat 43601014
Query: 2075 nccagaacctaatcccttgatgtggaaaataggatgttaatcaaacaaagggcagaaaga 2134
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43601015 gccagaacctaatcccttgatgtggaaaataggatgttaatcaaacaaagggcagaaaga 43601074
Query: 2135 agcctgtgactatctgggctcgagaagtcaagtatttcatgctgggagtaagacgtaagc 2194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43601075 agcctgtgactatctgggctcgagaagtcaagtatttcatgctgggagtaagacgtaagc 43601134
Query: 2195 catggaaaaatgctctccgggcatgaataaggctgctggccatgagcctttttactcctg 2254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43601135 catggaaaaatgctctccgggcatgaataaggctgctggccatgagcctttttactcctg 43601194
Query: 2255 acctggtttctaagtagtttgttattagggagctggatcggagggaaggcttctgcctgc 2314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43601195 acctggtttctaagtagtttgttattagggagctggatcggagggaaggcttctgcctgc 43601254
Query: 2315 attttgtatatactcatctataaattgttcatgttcacatatttgagggggg 2366
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43601255 attttgtatatactcatctataaattgttcatgttcacatatttgagggggg 43601306
Score = 365 bits (184), Expect = 7e-98
Identities = 184/184 (100%)
Strand = Plus / Plus
Query: 212 agatgttccgttcccgttgggccagtggacgtgcagatccaaaactcatctgtatcaccg 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43586934 agatgttccgttcccgttgggccagtggacgtgcagatccaaaactcatctgtatcaccg 43586993
Query: 272 tttggaaaactagtgattcacagctccattgattacagtgcattcaaacacaacggcaca 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43586994 tttggaaaactagtgattcacagctccattgattacagtgcattcaaacacaacggcaca 43587053
Query: 332 gtggagtgcagggcttacaacgatgtgggcaagagttctgccttttttaactttgcattt 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43587054 gtggagtgcagggcttacaacgatgtgggcaagagttctgccttttttaactttgcattt 43587113
Query: 392 aaag 395
||||
Sbjct: 43587114 aaag 43587117
Score = 295 bits (149), Expect = 6e-77
Identities = 152/153 (99%)
Strand = Plus / Plus
Query: 844 agggcccacgctggtcattacagaatattgttgctatggtgatctcctgaattttttgag 903
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43590970 agggcccaccctggtcattacagaatattgttgctatggtgatctcctgaattttttgag 43591029
Query: 904 acggaaacgtgattcgtttatttgctcaaagcaggaagatcacgcagaagcggcgcttta 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43591030 acggaaacgtgattcgtttatttgctcaaagcaggaagatcacgcagaagcggcgcttta 43591089
Query: 964 taagaaccttctgcattcaaaggagtcttcctg 996
|||||||||||||||||||||||||||||||||
Sbjct: 43591090 taagaaccttctgcattcaaaggagtcttcctg 43591122
Score = 260 bits (131), Expect = 3e-66
Identities = 131/131 (100%)
Strand = Plus / Plus
Query: 500 cagaagcccatgtatgaagtacagtggaaggttgtcgaggagataaatggaaacaattat 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43588717 cagaagcccatgtatgaagtacagtggaaggttgtcgaggagataaatggaaacaattat 43588776
Query: 560 gtctacatagacccaacgcaacttccttatgatcacaaatgggaatttcccaggaacagg 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43588777 gtctacatagacccaacgcaacttccttatgatcacaaatgggaatttcccaggaacagg 43588836
Query: 620 ctgagttttgg 630
|||||||||||
Sbjct: 43588837 ctgagttttgg 43588847
Score = 260 bits (131), Expect = 3e-66
Identities = 131/131 (100%)
Strand = Plus / Plus
Query: 1087 aggctcatacatagaacgagatgtgactcctgccatcatggaagatgatgagttggccct 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43593739 aggctcatacatagaacgagatgtgactcctgccatcatggaagatgatgagttggccct 43593798
Query: 1147 agacctggaggacttgctcagcttttcttaccaagtggcaaagggcatggccttcctcgc 1206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43593799 agacctggaggacttgctcagcttttcttaccaagtggcaaagggcatggccttcctcgc 43593858
Query: 1207 ctcgaagaatg 1217
|||||||||||
Sbjct: 43593859 ctcgaagaatg 43593869
Score = 228 bits (115), Expect = 1e-56
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 99 caaaaccagaaatcctgactcatgacaggctcatgaacggcatgctccagtgtgtggcgg 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43583780 caaaaccagaaatcctgactcatgacaggctcatgaacggcatgctccagtgtgtggcgg 43583839
Query: 159 caggcttcccagagcccaccatcgattggtatttctgtccaggcaccgagcagag 213
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43583840 caggcttcccagagcccaccatcgattggtatttctgtccaggcaccgagcagag 43583894
Score = 224 bits (113), Expect = 2e-55
Identities = 113/113 (100%)
Strand = Plus / Plus
Query: 1217 gctcggctacccgtgaagtggatggcacccgagagcattttcaactgtgtctacacattt 1276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43597516 gctcggctacccgtgaagtggatggcacccgagagcattttcaactgtgtctacacattt 43597575
Query: 1277 gaaagcgatgtctggtcctatgggatttttctgtgggagctcttctctttagg 1329
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43597576 gaaagcgatgtctggtcctatgggatttttctgtgggagctcttctctttagg 43597628
Score = 222 bits (112), Expect = 7e-55
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 735 caagtgcccatttaacggaacgagaagccctaatgtctgaactcaaagtcttaagttacc 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43589602 caagtgcccatttaacggaacgagaagccctaatgtctgaactcaaagtcttaagttacc 43589661
Query: 795 tcggtaatcacatgaatattgtgaatcttctcggcgcctgcaccattggagg 846
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43589662 tcggtaatcacatgaatattgtgaatcttctcggcgcctgcaccattggagg 43589713
Score = 216 bits (109), Expect = 4e-53
Identities = 109/109 (100%)
Strand = Plus / Plus
Query: 394 agaacaaatccatgcccacaccctcttcacgcctttgctgattggttttgtgatcgcagc 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43588516 agaacaaatccatgcccacaccctcttcacgcctttgctgattggttttgtgatcgcagc 43588575
Query: 454 gggtatgatgtgtatcatcgtgatgattctcacctataaatatctacag 502
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43588576 gggtatgatgtgtatcatcgtgatgattctcacctataaatatctacag 43588624
Score = 210 bits (106), Expect = 3e-51
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 1429 gtatgacatcatgaagacttgctgggatgcggatcccctcaaaagaccaacgtttaagca 1488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43598477 gtatgacatcatgaagacttgctgggatgcggatcccctcaaaagaccaacgtttaagca 43598536
Query: 1489 gatcgtgcagctgattgagaagcagatttcggagagcaccaatcac 1534
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43598537 gatcgtgcagctgattgagaagcagatttcggagagcaccaatcac 43598582
Score = 202 bits (102), Expect = 6e-49
Identities = 105/106 (99%)
Strand = Plus / Plus
Query: 629 ggcaaaaccttgggtgctggcgccttcgggaaagtcgttgaggccactgcatacggctta 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43589412 ggcaaaaccttgggtgctggcgccttcgggaaagtcgttgaggccactgcatacggctta 43589471
Query: 689 attaagtcagatgcggccatgaccgttgccgtgaagatgcttaaac 734
||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 43589472 attaagtcagatgcggccatgaccgttgccgtgaagatgctcaaac 43589517
Score = 190 bits (96), Expect = 2e-45
Identities = 103/104 (99%), Gaps = 1/104 (0%)
Strand = Plus / Plus
Query: 1328 gggagcagcccctaccccggaatgccagttgattctaaattctacaagatgatcaaggag 1387
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 43597740 gggagcagcccctaccccggaatgccagt-gattctaaattctacaagatgatcaaggag 43597798
Query: 1388 ggtttccgaatgctcagccctgagcatgcacctgtggaaatgta 1431
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43597799 ggtttccgaatgctcagccctgagcatgcacctgtggaaatgta 43597842
Score = 186 bits (94), Expect = 4e-44
Identities = 97/98 (98%)
Strand = Plus / Plus
Query: 1 cttgaccagattaaaagggaccgaaggaggcacttacacatttctcgtgtccaatgctga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43568257 cttgaccagattaaaagggaccgaaggaggcacttacacatttctcgtgtccaatgctga 43568316
Query: 61 tgtcaattcttctgtgacacttaatgtttacgtgaaca 98
||||||||||||||||||| ||||||||||||||||||
Sbjct: 43568317 tgtcaattcttctgtgacatttaatgtttacgtgaaca 43568354
Score = 186 bits (94), Expect = 4e-44
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 996 gcagtgacagtactaacgagtacatggacatgaaacccggagtgtcttatgtggtaccaa 1055
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43593159 gcagtgacagtactaacgagtacatggacatgaaacccggagtgtcttatgtggtaccaa 43593218
Query: 1056 ccaaggcagacaaaaggagatctgcgagaatagg 1089
||||||||||||||||||||||||||||||||||
Sbjct: 43593219 ccaaggcagacaaaaggagatctgcgagaatagg 43593252
>Sscrofa_Chr02
|| Length = 162569375
Score = 61.9 bits (31), Expect = 1e-06
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 1226 cccgtgaagtggatggcacccgagagcattttcaactgtgtctacac 1272
||||||||||||||||| ||||||||||| ||| |||| ||||||||
Sbjct: 157858355 cccgtgaagtggatggcccccgagagcatcttcgactgcgtctacac 157858309
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 66,673,212
Number of extensions: 363
Number of successful extensions: 363
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 362
Number of HSP's successfully gapped: 17
Length of query: 2366
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2344
Effective length of database: 2,808,408,574
Effective search space: 6582909697456
Effective search space used: 6582909697456
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)