Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012637
(1294 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001159956.1| mast/stem cell growth factor receptor [Bos t... 818 0.0
Alignment gi|NP_001068871.2| macrophage colony-stimulating factor 1 recep... 446 e-125
Alignment gi|NP_001179274.1| alpha-type platelet-derived growth factor re... 401 e-112
Alignment gi|XP_002688301.1| PREDICTED: platelet-derived growth factor re... 401 e-112
Alignment gi|NP_001069364.2| beta-type platelet-derived growth factor rec... 382 e-106
Alignment gi|XP_002689337.1| PREDICTED: platelet-derived growth factor re... 382 e-106
Alignment gi|XP_001790034.1| PREDICTED: platelet-derived growth factor re... 382 e-106
Alignment gi|XP_002691902.1| PREDICTED: fms-related tyrosine kinase 3-lik... 375 e-104
Alignment gi|XP_590263.4| PREDICTED: fms-related tyrosine kinase 3-like [... 375 e-104
Alignment gi|NP_001103470.1| vascular endothelial growth factor receptor ... 327 2e-89
>ref|NP_001159956.1| mast/stem cell growth factor receptor [Bos taurus].
Length = 977
Score = 818 bits (2112), Expect = 0.0
Identities = 402/418 (96%), Positives = 403/418 (96%)
Frame = +3
Query: 3 VVEEINGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAM 182
VVEEINGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAM
Sbjct: 560 VVEEINGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAM 619
Query: 183 TVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDL 362
TVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDL
Sbjct: 620 TVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDL 679
Query: 363 LNFLRRKRDSFICSKQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADK 542
LNFLRRKRDSFICSKQEDHAE ALYKNLLHSKESSC+DSTNEYMDMKPGVSYVVPTKADK
Sbjct: 680 LNFLRRKRDSFICSKQEDHAEVALYKNLLHSKESSCNDSTNEYMDMKPGVSYVVPTKADK 739
Query: 543 RRSARIGSYIERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASKNCIHRDLAARNI 722
RRSARIGSYIERDVTPAIM SFSYQVAKGMAFLASKNCIHRDLAARNI
Sbjct: 740 RRSARIGSYIERDVTPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNI 799
Query: 723 LLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIF 902
LLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIF
Sbjct: 800 LLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIF 859
Query: 903 LWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLKRPTFK 1082
LWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAP EMYDIMKTCWDADPLKRPTFK
Sbjct: 860 LWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFK 919
Query: 1083 QIVQLIEKQISESTNHIYSNLANCSPHRENPAVDHSVRINSVGSSASSTQPLLVHEDV 1256
QIVQLIEKQISESTNHIYSNLANCSPHRENPAVDHSVRINSVGSSASSTQPLLVHEDV
Sbjct: 920 QIVQLIEKQISESTNHIYSNLANCSPHRENPAVDHSVRINSVGSSASSTQPLLVHEDV 977
>ref|NP_001068871.2| macrophage colony-stimulating factor 1 receptor [Bos taurus].
Length = 964
Score = 446 bits (1147), Expect = e-125
Identities = 232/423 (54%), Positives = 287/423 (67%), Gaps = 10/423 (2%)
Frame = +3
Query: 3 VVEEINGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAM 182
++E GN+Y +IDPTQLPY+ KWEFPRN L FGKTLGAGAFGKVVEATA+GL K DA +
Sbjct: 549 IIESYEGNSYTFIDPTQLPYNEKWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVL 608
Query: 183 TVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDL 362
VAVKMLK +AH E+EALMSELK++S+LG H NIVNLLGACT GGP LVITEYCCYGDL
Sbjct: 609 KVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDL 668
Query: 363 LNFLRRKRDSFI---CSKQEDHAEAALYKNLLHSKESSCSDS------TNEYMDMKPGVS 515
LNFLRRK ++ + S +D YKN+ K+ DS + Y++M+P
Sbjct: 669 LNFLRRKAEAMLGPSLSPGQDPEAGTGYKNIHLEKKYIRRDSGFSSQGVDTYVEMRP--- 725
Query: 516 YVVPTKADKRRSARIGSYIERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASKNCI 695
V T + S+ E+D+ FS QVA+GMAFLASKNCI
Sbjct: 726 --VSTSSSN------DSFSEQDLDKE----DGRPLELRDLLHFSSQVAQGMAFLASKNCI 773
Query: 696 HRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFE 875
HRD+AARN+LLT G + KI DFGLARDI NDSNY+VKGNARLPVKWMAPESIF+CVYT +
Sbjct: 774 HRDVAARNVLLTSGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQ 833
Query: 876 SDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDA 1055
SDVWSYGI LWE+FSLG +PYPG+ V+SKFYK++K+G++M P AP +Y IM+ CW
Sbjct: 834 SDVWSYGILLWEIFSLGLNPYPGILVNSKFYKLVKDGYQMAQPAFAPENIYSIMQACWAL 893
Query: 1056 DPLKRPTFKQIVQLIEKQIS-ESTNHIYSNLANCSPHRENPAVDHSVRINSVGSSASSTQ 1232
+P +RPTF+QI L+++Q+ + YSNL + P + S + Q
Sbjct: 894 EPTRRPTFQQICSLLQEQVQVDRREQDYSNLPSSGSSSSEPEEESSSEHLTCCEQGDIAQ 953
Query: 1233 PLL 1241
PLL
Sbjct: 954 PLL 956
>ref|NP_001179274.1| alpha-type platelet-derived growth factor receptor [Bos taurus].
Length = 1089
Score = 401 bits (1031), Expect = e-112
Identities = 207/417 (49%), Positives = 271/417 (64%), Gaps = 24/417 (5%)
Frame = +3
Query: 3 VVEEIN--GNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDA 176
V+E I+ G+ Y+Y+DP QLPYD +WEFPR+ L G+ LG+GAFGKVVE TAYGL +S
Sbjct: 561 VIESISPDGHEYIYVDPMQLPYDSRWEFPRDGLVLGRILGSGAFGKVVEGTAYGLSRSQP 620
Query: 177 AMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYG 356
M VAVKMLKP+A +E++ALMSELK++++LG H+NIVNLLGACT GP +ITEYC YG
Sbjct: 621 VMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKSGPIYIITEYCFYG 680
Query: 357 DLLNFLRRKRDSFICSKQEDHAEAALYKNLLHSKESSCS------DSTNEYMDMKPG--- 509
DL+N+L + RDSF+ E + L + ES+ S ++ +YMDMK
Sbjct: 681 DLVNYLHKNRDSFLSHHPEKPKKELDIFGLNPADESTRSYVILSFENNGDYMDMKQADTT 740
Query: 510 -------------VSYVVPTKADKRRSARIGSYIERDVTPAIMXXXXXXXXXXXXXSFSY 650
S + D+ S + S ++ +V + SF+Y
Sbjct: 741 QYVPMLERKEVSKYSDIQRALYDRPASYKKKSMLDSEVKNLLSDDNSEGLTLLDLLSFTY 800
Query: 651 QVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVK 830
QVA+GM FLASKNC+HRDLAARN+LL G+I KICDFGLARDI +DSNYV KG+ LPVK
Sbjct: 801 QVARGMEFLASKNCVHRDLAARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGSTFLPVK 860
Query: 831 WMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEH 1010
WMAPESIF+ +YT SDVWSYGI LWE+FSLG +PYPGM VDS FY IK G+RM P+H
Sbjct: 861 WMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMMVDSTFYNKIKSGYRMAKPDH 920
Query: 1011 APVEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISESTNHIYSNLANCSPHRENPAV 1181
A E+Y+IM CW+++P KRP+F + +++E + Y + ++PAV
Sbjct: 921 ATSEVYEIMVKCWNSEPEKRPSFYHLSEIVENLLPGQYKKSYEKIHLDFLKSDHPAV 977
>ref|XP_002688301.1| PREDICTED: platelet-derived growth factor receptor, alpha polypeptide
[Bos taurus].
Length = 1089
Score = 401 bits (1031), Expect = e-112
Identities = 207/417 (49%), Positives = 271/417 (64%), Gaps = 24/417 (5%)
Frame = +3
Query: 3 VVEEIN--GNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDA 176
V+E I+ G+ Y+Y+DP QLPYD +WEFPR+ L G+ LG+GAFGKVVE TAYGL +S
Sbjct: 561 VIESISPDGHEYIYVDPMQLPYDSRWEFPRDGLVLGRILGSGAFGKVVEGTAYGLSRSQP 620
Query: 177 AMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYG 356
M VAVKMLKP+A +E++ALMSELK++++LG H+NIVNLLGACT GP +ITEYC YG
Sbjct: 621 VMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKSGPIYIITEYCFYG 680
Query: 357 DLLNFLRRKRDSFICSKQEDHAEAALYKNLLHSKESSCS------DSTNEYMDMKPG--- 509
DL+N+L + RDSF+ E + L + ES+ S ++ +YMDMK
Sbjct: 681 DLVNYLHKNRDSFLSHHPEKPKKELDIFGLNPADESTRSYVILSFENNGDYMDMKQADTT 740
Query: 510 -------------VSYVVPTKADKRRSARIGSYIERDVTPAIMXXXXXXXXXXXXXSFSY 650
S + D+ S + S ++ +V + SF+Y
Sbjct: 741 QYVPMLERKEVSKYSDIQRALYDRPASYKKKSMLDSEVKNLLSDDNSEGLTLLDLLSFTY 800
Query: 651 QVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVK 830
QVA+GM FLASKNC+HRDLAARN+LL G+I KICDFGLARDI +DSNYV KG+ LPVK
Sbjct: 801 QVARGMEFLASKNCVHRDLAARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGSTFLPVK 860
Query: 831 WMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEH 1010
WMAPESIF+ +YT SDVWSYGI LWE+FSLG +PYPGM VDS FY IK G+RM P+H
Sbjct: 861 WMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMMVDSTFYNKIKSGYRMAKPDH 920
Query: 1011 APVEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISESTNHIYSNLANCSPHRENPAV 1181
A E+Y+IM CW+++P KRP+F + +++E + Y + ++PAV
Sbjct: 921 ATSEVYEIMVKCWNSEPEKRPSFYHLSEIVENLLPGQYKKSYEKIHLDFLKSDHPAV 977
>ref|NP_001069364.2| beta-type platelet-derived growth factor receptor [Bos taurus].
Length = 1103
Score = 382 bits (982), Expect = e-106
Identities = 203/419 (48%), Positives = 270/419 (64%), Gaps = 26/419 (6%)
Frame = +3
Query: 3 VVEEIN--GNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDA 176
V+E ++ G+ Y+Y+DP QLPYD WE PR++L G+TLG+GAFG+VVEATA+GL S A
Sbjct: 567 VIESVSSDGHEYIYVDPMQLPYDSTWELPRDQLVLGRTLGSGAFGQVVEATAHGLSHSQA 626
Query: 177 AMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYG 356
M VAVKMLK +A +E++ALMSELK++S+LG H+N+VNLLGACT GGP +ITEYC YG
Sbjct: 627 TMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNVVNLLGACTKGGPIYIITEYCRYG 686
Query: 357 DLLNFLRRKRDSFI--CSKQEDHAEAALYKNL------LHSKESSCSDSTNEYMDMK--P 506
DL+++L R + +F+ CS + A LY N L S S +S YMDM
Sbjct: 687 DLVDYLHRNKHTFLQRCSDKRRPPSAELYSNALPVGLPLPSHVSLPGESDGGYMDMSKDE 746
Query: 507 GVSYV--VPTKADKRRS--------ARIGSYI----ERDVTPAIMXXXXXXXXXXXXXSF 644
V YV + K D + + A +Y+ ER ++ F
Sbjct: 747 SVDYVPMLDMKGDVKYADIESSNYMAPYDNYVPSAPERTCRVTLI-NESPVLSYTDLVGF 805
Query: 645 SYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLP 824
SYQVA GM FLASKNC+HRDLAARN+L+ G++ KICDFGLARDI DSNY+ KG+ LP
Sbjct: 806 SYQVANGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMRDSNYISKGSTFLP 865
Query: 825 VKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSP 1004
+KWMAPESIFN +YT SDVWS+GI LWE+F+LG +PYP +P++ +FY IK G+RM P
Sbjct: 866 LKWMAPESIFNSLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNEQFYNAIKRGYRMAQP 925
Query: 1005 EHAPVEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISESTNHIYSNLANCSPHRENPAV 1181
HA E+Y+IM+ CW+ RP F Q+V L+E+ + E Y + ++PA+
Sbjct: 926 AHASDEIYEIMQKCWEEKFEIRPPFSQLVLLLERLLGEGYKKKYQQVDEEFLRSDHPAI 984
>ref|XP_002689337.1| PREDICTED: platelet-derived growth factor receptor, beta polypeptide
[Bos taurus].
Length = 1103
Score = 382 bits (982), Expect = e-106
Identities = 203/419 (48%), Positives = 270/419 (64%), Gaps = 26/419 (6%)
Frame = +3
Query: 3 VVEEIN--GNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDA 176
V+E ++ G+ Y+Y+DP QLPYD WE PR++L G+TLG+GAFG+VVEATA+GL S A
Sbjct: 567 VIESVSSDGHEYIYVDPMQLPYDSTWELPRDQLVLGRTLGSGAFGQVVEATAHGLSHSQA 626
Query: 177 AMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYG 356
M VAVKMLK +A +E++ALMSELK++S+LG H+N+VNLLGACT GGP +ITEYC YG
Sbjct: 627 TMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNVVNLLGACTKGGPIYIITEYCRYG 686
Query: 357 DLLNFLRRKRDSFI--CSKQEDHAEAALYKNL------LHSKESSCSDSTNEYMDMK--P 506
DL+++L R + +F+ CS + A LY N L S S +S YMDM
Sbjct: 687 DLVDYLHRNKHTFLQRCSDKRRPPSAELYSNALPVGLPLPSHVSLPGESDGGYMDMSKDE 746
Query: 507 GVSYV--VPTKADKRRS--------ARIGSYI----ERDVTPAIMXXXXXXXXXXXXXSF 644
V YV + K D + + A +Y+ ER ++ F
Sbjct: 747 SVDYVPMLDMKGDVKYADIESSNYMAPYDNYVPSAPERTCRVTLI-NESPVLSYTDLVGF 805
Query: 645 SYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLP 824
SYQVA GM FLASKNC+HRDLAARN+L+ G++ KICDFGLARDI DSNY+ KG+ LP
Sbjct: 806 SYQVANGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMRDSNYISKGSTFLP 865
Query: 825 VKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSP 1004
+KWMAPESIFN +YT SDVWS+GI LWE+F+LG +PYP +P++ +FY IK G+RM P
Sbjct: 866 LKWMAPESIFNSLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNEQFYNAIKRGYRMAQP 925
Query: 1005 EHAPVEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISESTNHIYSNLANCSPHRENPAV 1181
HA E+Y+IM+ CW+ RP F Q+V L+E+ + E Y + ++PA+
Sbjct: 926 AHASDEIYEIMQKCWEEKFEIRPPFSQLVLLLERLLGEGYKKKYQQVDEEFLRSDHPAI 984
>ref|XP_001790034.1| PREDICTED: platelet-derived growth factor receptor beta [Bos taurus].
Length = 1103
Score = 382 bits (982), Expect = e-106
Identities = 203/419 (48%), Positives = 270/419 (64%), Gaps = 26/419 (6%)
Frame = +3
Query: 3 VVEEIN--GNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDA 176
V+E ++ G+ Y+Y+DP QLPYD WE PR++L G+TLG+GAFG+VVEATA+GL S A
Sbjct: 567 VIESVSSDGHEYIYVDPMQLPYDSTWELPRDQLVLGRTLGSGAFGQVVEATAHGLSHSQA 626
Query: 177 AMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYG 356
M VAVKMLK +A +E++ALMSELK++S+LG H+N+VNLLGACT GGP +ITEYC YG
Sbjct: 627 TMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNVVNLLGACTKGGPIYIITEYCRYG 686
Query: 357 DLLNFLRRKRDSFI--CSKQEDHAEAALYKNL------LHSKESSCSDSTNEYMDMK--P 506
DL+++L R + +F+ CS + A LY N L S S +S YMDM
Sbjct: 687 DLVDYLHRNKHTFLQRCSDKRRPPSAELYSNALPVGLPLPSHVSLPGESDGGYMDMSKDE 746
Query: 507 GVSYV--VPTKADKRRS--------ARIGSYI----ERDVTPAIMXXXXXXXXXXXXXSF 644
V YV + K D + + A +Y+ ER ++ F
Sbjct: 747 SVDYVPMLDMKGDVKYADIESSNYMAPYDNYVPSAPERTCRVTLI-NESPVLSYTDLVGF 805
Query: 645 SYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLP 824
SYQVA GM FLASKNC+HRDLAARN+L+ G++ KICDFGLARDI DSNY+ KG+ LP
Sbjct: 806 SYQVANGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMRDSNYISKGSTFLP 865
Query: 825 VKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSP 1004
+KWMAPESIFN +YT SDVWS+GI LWE+F+LG +PYP +P++ +FY IK G+RM P
Sbjct: 866 LKWMAPESIFNSLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNEQFYNAIKRGYRMAQP 925
Query: 1005 EHAPVEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISESTNHIYSNLANCSPHRENPAV 1181
HA E+Y+IM+ CW+ RP F Q+V L+E+ + E Y + ++PA+
Sbjct: 926 AHASDEIYEIMQKCWEEKFEIRPPFSQLVLLLERLLGEGYKKKYQQVDEEFLRSDHPAI 984
>ref|XP_002691902.1| PREDICTED: fms-related tyrosine kinase 3-like, partial [Bos taurus].
Length = 978
Score = 375 bits (963), Expect = e-104
Identities = 192/383 (50%), Positives = 252/383 (65%), Gaps = 9/383 (2%)
Frame = +3
Query: 24 NNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKML 203
N Y+YID + YD KWEFPR L FGK LG+GAFGKV+ ATAYG+ K+ ++ VAVKML
Sbjct: 572 NEYLYIDFREYEYDLKWEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKML 631
Query: 204 KPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRK 383
K A +EREALMSELK++++LG+H NIVNLLGACT+ GP +I EYCCYGDLLN+LR K
Sbjct: 632 KEKADSSEREALMSELKMMTHLGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSK 691
Query: 384 RDSFICSKQEDHAEA--ALYKNLLHSKESSCSDSTNEYM--DMKP-----GVSYVVPTKA 536
R+ F + E E + Y SS S + D P G S+ +
Sbjct: 692 REKFHRTWTEIFKEHNFSFYPTFQSHPNSSMPGSREVQIHPDSDPISGFNGNSFQSEDEI 751
Query: 537 DKRRSARIGSYIERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASKNCIHRDLAAR 716
+ R+ + +V F+YQVAKGM FL K+C+HRDLAAR
Sbjct: 752 EYENQKRLEEEEDLNVLT-----------FEDLLCFAYQVAKGMEFLEFKSCLHRDLAAR 800
Query: 717 NILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYG 896
N+L+THG++ KI DFGLARDI +DSNYV++GNARLPVKWMAPES+F +YT +SDVWSYG
Sbjct: 801 NVLVTHGKVAKIADFGLARDIMSDSNYVIRGNARLPVKWMAPESLFEGIYTIKSDVWSYG 860
Query: 897 IFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLKRPT 1076
I LWE+FSLG +PYPG+P D+ FYK+I+ GF+M P +A E+Y IM++CW D KRP+
Sbjct: 861 ILLWEIFSLGVNPYPGIPADANFYKLIQSGFKMDQPFYATEEIYFIMQSCWAFDSRKRPS 920
Query: 1077 FKQIVQLIEKQISESTNHIYSNL 1145
F + + Q++++ +Y N+
Sbjct: 921 FPNLTSFLGCQLADAEEAMYQNM 943
>ref|XP_590263.4| PREDICTED: fms-related tyrosine kinase 3-like [Bos taurus].
Length = 1077
Score = 375 bits (963), Expect = e-104
Identities = 192/383 (50%), Positives = 252/383 (65%), Gaps = 9/383 (2%)
Frame = +3
Query: 24 NNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKML 203
N Y+YID + YD KWEFPR L FGK LG+GAFGKV+ ATAYG+ K+ ++ VAVKML
Sbjct: 671 NEYLYIDFREYEYDLKWEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKML 730
Query: 204 KPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRK 383
K A +EREALMSELK++++LG+H NIVNLLGACT+ GP +I EYCCYGDLLN+LR K
Sbjct: 731 KEKADSSEREALMSELKMMTHLGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSK 790
Query: 384 RDSFICSKQEDHAEA--ALYKNLLHSKESSCSDSTNEYM--DMKP-----GVSYVVPTKA 536
R+ F + E E + Y SS S + D P G S+ +
Sbjct: 791 REKFHRTWTEIFKEHNFSFYPTFQSHPNSSMPGSREVQIHPDSDPISGFNGNSFQSEDEI 850
Query: 537 DKRRSARIGSYIERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASKNCIHRDLAAR 716
+ R+ + +V F+YQVAKGM FL K+C+HRDLAAR
Sbjct: 851 EYENQKRLEEEEDLNVLT-----------FEDLLCFAYQVAKGMEFLEFKSCLHRDLAAR 899
Query: 717 NILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYG 896
N+L+THG++ KI DFGLARDI +DSNYV++GNARLPVKWMAPES+F +YT +SDVWSYG
Sbjct: 900 NVLVTHGKVAKIADFGLARDIMSDSNYVIRGNARLPVKWMAPESLFEGIYTIKSDVWSYG 959
Query: 897 IFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLKRPT 1076
I LWE+FSLG +PYPG+P D+ FYK+I+ GF+M P +A E+Y IM++CW D KRP+
Sbjct: 960 ILLWEIFSLGVNPYPGIPADANFYKLIQSGFKMDQPFYATEEIYFIMQSCWAFDSRKRPS 1019
Query: 1077 FKQIVQLIEKQISESTNHIYSNL 1145
F + + Q++++ +Y N+
Sbjct: 1020 FPNLTSFLGCQLADAEEAMYQNM 1042
>ref|NP_001103470.1| vascular endothelial growth factor receptor 2 [Bos taurus].
Length = 1356
Score = 327 bits (837), Expect = 2e-89
Identities = 174/360 (48%), Positives = 233/360 (64%), Gaps = 12/360 (3%)
Frame = +3
Query: 51 QLPYD-HKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTE 227
+LPYD KWEFPR+RL GK LG GAFG+V+EA A+G+ K+ TVAVKMLK A E
Sbjct: 819 RLPYDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCKTVAVKMLKEGATHGE 878
Query: 228 REALMSELKVLSYLGNHMNIVNLLGACTI-GGPTLVITEYCCYGDLLNFLRRKRDSFICS 404
ALMSELK+L ++G+H+N+VNLLGACT GGP +VI E+C +G+L +LR KR+ F+
Sbjct: 879 HRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPY 938
Query: 405 KQE--DHAEAALY--------KNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADKRRSA 554
K + + Y K L S SS S +++ +++ K
Sbjct: 939 KTKGAQFRQGKEYVGEITMDPKRRLDSITSSQSSASSGFVEEKS---------------- 982
Query: 555 RIGSYIERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASKNCIHRDLAARNILLTH 734
+ E +V+ + +S+QVAKGM FLAS+ CIHRDLAARNILL+
Sbjct: 983 -LSDVEEEEVSEDLYKNFLTLEHLIC---YSFQVAKGMEFLASRKCIHRDLAARNILLSE 1038
Query: 735 GRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWEL 914
+ KICDFGLARDI D +YV KG+ARLP+KWMAPE+IF+ VYT +SDVWS+G+ LWE+
Sbjct: 1039 KNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEI 1098
Query: 915 FSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLKRPTFKQIVQ 1094
FSLG+SPYPG+ +D +F + +KEG RM +P++ EMY M CW DP +RPTF ++V+
Sbjct: 1099 FSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGDPNQRPTFSELVE 1158
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 50,400,426
Number of extensions: 1376975
Number of successful extensions: 5557
Number of sequences better than 1.0e-05: 386
Number of HSP's gapped: 4907
Number of HSP's successfully gapped: 477
Length of query: 431
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 326
Effective length of database: 14,207,134
Effective search space: 4631525684
Effective search space used: 4631525684
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012637
(1294 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003181.1| mast/stem cell growth factor receptor [Canis... 806 0.0
Alignment gi|XP_546306.2| PREDICTED: similar to colony stimulating factor... 442 e-124
Alignment gi|XP_532374.2| PREDICTED: similar to Alpha platelet-derived gr... 400 e-111
Alignment gi|NP_001003382.1| beta-type platelet-derived growth factor rec... 385 e-107
Alignment gi|NP_001018647.1| FL cytokine receptor [Canis lupus familiaris]. 382 e-106
Alignment gi|XP_534520.2| PREDICTED: similar to Vascular endothelial grow... 331 8e-91
Alignment gi|XP_538585.2| PREDICTED: similar to fms-related tyrosine kina... 327 2e-89
Alignment gi|NP_001041489.1| vascular endothelial growth factor receptor ... 326 3e-89
Alignment gi|NP_001184028.1| proto-oncogene tyrosine-protein kinase recep... 261 1e-69
Alignment gi|XP_545926.2| PREDICTED: similar to Fibroblast growth factor ... 246 3e-65
>ref|NP_001003181.1| mast/stem cell growth factor receptor [Canis lupus familiaris].
Length = 975
Score = 806 bits (2083), Expect = 0.0
Identities = 396/418 (94%), Positives = 399/418 (95%)
Frame = +3
Query: 3 VVEEINGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAM 182
VVEEINGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAM
Sbjct: 558 VVEEINGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAM 617
Query: 183 TVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDL 362
TVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACT+GGPTLVITEYCCYGDL
Sbjct: 618 TVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTVGGPTLVITEYCCYGDL 677
Query: 363 LNFLRRKRDSFICSKQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADK 542
LNFLRRKRDSFICSKQEDH E ALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADK
Sbjct: 678 LNFLRRKRDSFICSKQEDHGEVALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADK 737
Query: 543 RRSARIGSYIERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASKNCIHRDLAARNI 722
RRSARIGSYIERDVTPAIM SFSYQVAKGMAFLASKNCIHRDLAARNI
Sbjct: 738 RRSARIGSYIERDVTPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNI 797
Query: 723 LLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIF 902
LLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIF
Sbjct: 798 LLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIF 857
Query: 903 LWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLKRPTFK 1082
LWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAP EMYDIMKTCWDADPLKRPTFK
Sbjct: 858 LWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFK 917
Query: 1083 QIVQLIEKQISESTNHIYSNLANCSPHRENPAVDHSVRINSVGSSASSTQPLLVHEDV 1256
QIVQLIEKQIS+STNHIYSNLANCSP+ E P VDHSVRINSVGSSASSTQPLLVHEDV
Sbjct: 918 QIVQLIEKQISDSTNHIYSNLANCSPNPERPVVDHSVRINSVGSSASSTQPLLVHEDV 975
>ref|XP_546306.2| PREDICTED: similar to colony stimulating factor 1 receptor precursor
[Canis familiaris].
Length = 967
Score = 442 bits (1138), Expect = e-124
Identities = 227/395 (57%), Positives = 282/395 (71%), Gaps = 10/395 (2%)
Frame = +3
Query: 3 VVEEINGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAM 182
++E GN+Y +IDPTQLPY+ KWEFPRN L FGKTLGAGAFGKVVEATA+GL K DA +
Sbjct: 549 IIESYEGNSYTFIDPTQLPYNEKWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVL 608
Query: 183 TVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDL 362
VAVKMLK +AH E+EALMSELK++S+LG H NIVNLLGACT GGP LVITEYCCYGDL
Sbjct: 609 KVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDL 668
Query: 363 LNFLRRKRDSFI---CSKQEDHAEAALYKNLLHSKESSCSDS------TNEYMDMKPGVS 515
LNFLRRK ++ + S +D A YKN+ K+ DS + Y++M+P
Sbjct: 669 LNFLRRKAEAMLGPSVSVGQDPGAGAGYKNIHLEKKYVRRDSGFSSQGVDTYVEMRP--- 725
Query: 516 YVVPTKADKRRSARIGSYIERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASKNCI 695
V T + S+ E+D+ FS QVA+GMAFLASKNCI
Sbjct: 726 --VSTSSSN------DSFSEQDLDKE----DGRPLELRDLLHFSSQVAQGMAFLASKNCI 773
Query: 696 HRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFE 875
HRD+AARN+LLT GR+ KI DFGLARDI NDSNY+VKGNARLPVKWMAPESIF+CVYT +
Sbjct: 774 HRDVAARNVLLTSGRVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQ 833
Query: 876 SDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDA 1055
SDVWSYGI LWE+FSLG +PYPG+ V+SKFYK++K+G++M P AP +Y +M+ CW
Sbjct: 834 SDVWSYGILLWEIFSLGLNPYPGILVNSKFYKLVKDGYQMAQPAFAPKNIYSVMQACWAL 893
Query: 1056 DPLKRPTFKQIVQLIEKQI-SESTNHIYSNLANCS 1157
+P +RPTF+QI L+++Q ++ Y+NL + S
Sbjct: 894 EPTRRPTFQQICSLLQEQAQADRREPDYTNLPSSS 928
>ref|XP_532374.2| PREDICTED: similar to Alpha platelet-derived growth factor receptor
precursor (PDGF-R-alpha) (CD140a antigen) [Canis
familiaris].
Length = 1089
Score = 400 bits (1028), Expect = e-111
Identities = 211/417 (50%), Positives = 274/417 (65%), Gaps = 24/417 (5%)
Frame = +3
Query: 3 VVEEIN--GNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDA 176
V+E I+ G+ Y+Y+DP QLPYD +WEFPR+ L G+ LG+GAFGKVVE TAYGL +S
Sbjct: 561 VIESISPDGHEYIYVDPMQLPYDSRWEFPRDGLVLGRILGSGAFGKVVEGTAYGLSRSQP 620
Query: 177 AMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYG 356
M VAVKMLKP+A +E++ALMSELK++++LG H+NIVNLLGACT GP +ITEYC YG
Sbjct: 621 VMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKSGPIYIITEYCFYG 680
Query: 357 DLLNFLRRKRDSFICSKQEDHAEAALYKNLLHSKESSCS------DSTNEYMDMKPG--V 512
DL+N+L + RDSF+ E + L + +S+ S ++ +YMDMK
Sbjct: 681 DLVNYLHKNRDSFLSRHPEKPKKELDIFGLNPADDSTRSYVILSFENNGDYMDMKQADTT 740
Query: 513 SYV-------VPTKADKRRSA--RIGSY-----IERDVTPAIMXXXXXXXXXXXXXSFSY 650
YV V +D +RS R SY ++ +V + SF+Y
Sbjct: 741 QYVPMLERKEVSKYSDIQRSLYDRPASYKKKSMLDSEVKNLLSDDNSEGLTLLDLLSFTY 800
Query: 651 QVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVK 830
QVA+GM FLASKNC+HRDLAARN+LL G+I KICDFGLARDI +DSNYV KG+ LPVK
Sbjct: 801 QVARGMEFLASKNCVHRDLAARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGSTFLPVK 860
Query: 831 WMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEH 1010
WMAPESIF+ +YT SDVWSYGI LWE+FSLG +PYPGM VDS FY IK G+RM P+H
Sbjct: 861 WMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMMVDSTFYNKIKSGYRMAKPDH 920
Query: 1011 APVEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISESTNHIYSNLANCSPHRENPAV 1181
A E+Y+IM CW ++P KRP+F + +++E + Y + ++PAV
Sbjct: 921 ATSEVYEIMVKCWHSEPEKRPSFYHLSEIVENLLPGQYKKSYEKIHLDFLKSDHPAV 977
>ref|NP_001003382.1| beta-type platelet-derived growth factor receptor precursor [Canis
lupus familiaris].
Length = 1103
Score = 385 bits (989), Expect = e-107
Identities = 205/423 (48%), Positives = 267/423 (63%), Gaps = 30/423 (7%)
Frame = +3
Query: 3 VVEEIN--GNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDA 176
V+E ++ G+ Y+Y+DP QLPYD WE PR++L G+TLG+GAFG+VVEATA+GL S A
Sbjct: 568 VIESVSSDGHEYIYVDPMQLPYDSTWELPRDQLVLGRTLGSGAFGQVVEATAHGLSHSQA 627
Query: 177 AMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYG 356
M VAVKMLK +A +E++ALMSELK++S+LG H+N+VNLLGACT GGP +ITEYC YG
Sbjct: 628 TMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNVVNLLGACTKGGPIYIITEYCRYG 687
Query: 357 DLLNFLRRKRDSFI--CSKQEDHAEAALYKNLLH------SKESSCSDSTNEYMDM---- 500
DL+++L R + +F+ CS + A LY N L S S +S YMDM
Sbjct: 688 DLVDYLHRNKHTFLQLCSDKRRPPSAELYSNALPAGLPLPSHVSLPGESDGGYMDMSKDE 747
Query: 501 ----------KPGVSYVVPTKADKRRSARIGSYIERDVTP------AIMXXXXXXXXXXX 632
K GV Y AD S+ + Y T A +
Sbjct: 748 SVDYVPMLDMKGGVKY-----ADIESSSYMAPYDNYVPTAPERTCRATLINESPVLSYTD 802
Query: 633 XXSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGN 812
FSYQVA GM FLASKNC+HRDLAARN+L+ G++ KICDFGLARDI DSNY+ KG+
Sbjct: 803 LVGFSYQVANGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMRDSNYISKGS 862
Query: 813 ARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFR 992
LP+KWMAPESIFN +YT SDVWS+GI LWE+F+LG +PYP +P++ +FY IK G+R
Sbjct: 863 TFLPLKWMAPESIFNSLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNEQFYNAIKRGYR 922
Query: 993 MLSPEHAPVEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISESTNHIYSNLANCSPHREN 1172
M P HA E+Y+IM+ CW+ RP F Q+V L+E+ + E Y + ++
Sbjct: 923 MAQPAHASDEIYEIMQKCWEEKFEIRPPFSQLVLLLERLLGEGYKKKYQQVDEEFLRSDH 982
Query: 1173 PAV 1181
PAV
Sbjct: 983 PAV 985
>ref|NP_001018647.1| FL cytokine receptor [Canis lupus familiaris].
Length = 993
Score = 382 bits (981), Expect = e-106
Identities = 193/383 (50%), Positives = 253/383 (66%), Gaps = 9/383 (2%)
Frame = +3
Query: 24 NNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKML 203
N Y YID + YD KWEFPR L FGK LG+GAFGKV+ ATAYG+ K+ ++ VAVKML
Sbjct: 587 NEYFYIDFREYEYDLKWEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKML 646
Query: 204 KPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRK 383
K A +EREALMSELK++++LGNH NIVNLLGACT+ GP +I EYCCYGDLLN+LR K
Sbjct: 647 KEKADSSEREALMSELKMMTHLGNHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRNK 706
Query: 384 RDSFICSKQEDHAEA--ALYKNLLHSKESSCSDSTN-------EYMDMKPGVSYVVPTKA 536
R+ F + E E + Y SS S +++ G S+ +
Sbjct: 707 REKFHRTWTEIFKEHNFSFYPTFQSHPNSSMPGSREVQIQQDLDHISGLNGNSFQSEDEI 766
Query: 537 DKRRSARIGSYIERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASKNCIHRDLAAR 716
+ R+ + +V F+YQVAKGM FL K+C+HRDLAAR
Sbjct: 767 EYENQKRLEEEEDLNVLT-----------FEDLLCFAYQVAKGMEFLEFKSCVHRDLAAR 815
Query: 717 NILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYG 896
N+L+THG++ KICDFGLARDI +DSNYV++GNARLPVKWMAPES+F +YT +SDVWSYG
Sbjct: 816 NVLVTHGKVVKICDFGLARDIMSDSNYVIRGNARLPVKWMAPESLFEGIYTIKSDVWSYG 875
Query: 897 IFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLKRPT 1076
I LWE+FSLG +PYPG+PVD+ FYK+I+ GF+M P +A E+Y IM++CW D KRP+
Sbjct: 876 ILLWEIFSLGVNPYPGIPVDANFYKLIQSGFKMDQPFYATEEIYFIMQSCWAFDSRKRPS 935
Query: 1077 FKQIVQLIEKQISESTNHIYSNL 1145
F + + Q++++ +Y N+
Sbjct: 936 FPNLTSFLGCQLADAEEAMYQNM 958
>ref|XP_534520.2| PREDICTED: similar to Vascular endothelial growth factor receptor 1
precursor (VEGFR-1) (Vascular permeability factor
receptor) (Tyrosine-protein kinase receptor FLT) (Flt-1)
(Tyrosine-protein kinase FRT) (Fms-like tyrosine kinase
1) [Canis familiaris].
Length = 1337
Score = 331 bits (849), Expect = 8e-91
Identities = 177/366 (48%), Positives = 239/366 (65%), Gaps = 18/366 (4%)
Frame = +3
Query: 51 QLPYD-HKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTE 227
+LPYD KWEF R RL GK+LG GAFGKVV+A+A+G+ KS TVAVKMLK A +E
Sbjct: 812 RLPYDASKWEFARERLKLGKSLGRGAFGKVVQASAFGIKKSPTCRTVAVKMLKEGATASE 871
Query: 228 REALMSELKVLSYLGNHMNIVNLLGACTI-GGPTLVITEYCCYGDLLNFLRRKRDSFICS 404
+ALM+ELK+L+++G+H+N+VNLLGACT GGP +VI EYC YG+L N+L+ KRD F +
Sbjct: 872 YKALMTELKILTHIGHHLNVVNLLGACTKQGGPLMVIVEYCKYGNLSNYLKSKRDLFFLN 931
Query: 405 KQEDHAEAALY----------------KNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKA 536
K +AAL+ K L S SS S +++ + + K + +
Sbjct: 932 K-----DAALHMEPKKEKMEPDPEQDKKQRLDSVTSSESFASSGFQEDK--------SLS 978
Query: 537 DKRRSARIGSYIERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASKNCIHRDLAAR 716
D + ++ +T + S+S+QVA+GM FL+S+ CIHRDLAAR
Sbjct: 979 DVEEEEDSDDFYKQPITMEDLI------------SYSFQVARGMEFLSSRKCIHRDLAAR 1026
Query: 717 NILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYG 896
NILL+ + KICDFGLARDI + +YV KG+ RLP+KWMAPESIF+ +Y+ +SDVWSYG
Sbjct: 1027 NILLSENNVVKICDFGLARDIYKNPDYVRKGDTRLPLKWMAPESIFDKIYSTKSDVWSYG 1086
Query: 897 IFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLKRPT 1076
+ LWE+FSLG SPYPG+ +D F +KEG RM +PE+A E+Y IM CW DP +RP
Sbjct: 1087 VLLWEIFSLGGSPYPGVQMDEDFCSRLKEGMRMRAPEYATPEIYQIMLDCWHKDPKERPR 1146
Query: 1077 FKQIVQ 1094
F ++V+
Sbjct: 1147 FAELVE 1152
>ref|XP_538585.2| PREDICTED: similar to fms-related tyrosine kinase 4 isoform 1 [Canis
familiaris].
Length = 1362
Score = 327 bits (838), Expect = 2e-89
Identities = 171/367 (46%), Positives = 239/367 (65%), Gaps = 11/367 (2%)
Frame = +3
Query: 33 VYIDPTQLPYDHK----------WEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAM 182
+ +DP ++P + + WEFPR RL G+ LG GAFGKVVEA+A+G+ K +
Sbjct: 815 IIMDPGEVPLEEQCEYLSYDASQWEFPRERLHLGRVLGHGAFGKVVEASAFGIHKGSSCD 874
Query: 183 TVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTI-GGPTLVITEYCCYGD 359
TVAVKMLK A +E ALMSELK+L ++GNH+N+VNLLGACT GP +VI E+C YG+
Sbjct: 875 TVAVKMLKEGATASEHRALMSELKILIHIGNHLNVVNLLGACTKPNGPLMVIVEFCKYGN 934
Query: 360 LLNFLRRKRDSFICSKQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKAD 539
L NFLR KR++F ++ + ++ L+ E + +D + +S ++ K
Sbjct: 935 LSNFLRAKREAFSPCAEKSPEQRRRFRTLV---EGARADRRRPGSSERALLSRLLMGKGG 991
Query: 540 KRRSARIGSYIERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASKNCIHRDLAARN 719
R+ + ++P M +S+QVA+GM FLAS+ CIHRDLAARN
Sbjct: 992 AGRAPPGPGAQDLWLSPLTMEDLVC---------YSFQVARGMEFLASRKCIHRDLAARN 1042
Query: 720 ILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGI 899
ILL+ + KICDFGLARDI D +YV KG+ARLP+KWMAPESIF+ VYT +SDVWS+G+
Sbjct: 1043 ILLSESDVVKICDFGLARDIYKDPDYVRKGSARLPLKWMAPESIFDKVYTTQSDVWSFGV 1102
Query: 900 FLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLKRPTF 1079
LWE+FSLG+SPYPG+ ++ +F + +KEG RM +PE A + IM +CW DP +RP F
Sbjct: 1103 LLWEIFSLGASPYPGVQINEEFCQRLKEGTRMRAPELATPAIRSIMLSCWSGDPKERPAF 1162
Query: 1080 KQIVQLI 1100
++V+++
Sbjct: 1163 SELVEIL 1169
>ref|NP_001041489.1| vascular endothelial growth factor receptor 2 [Canis lupus
familiaris].
Length = 1355
Score = 326 bits (836), Expect = 3e-89
Identities = 174/360 (48%), Positives = 235/360 (65%), Gaps = 12/360 (3%)
Frame = +3
Query: 51 QLPYD-HKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTE 227
+LPYD KWEFPR+RL GK LG GAFG+V+EA A+G+ K+ TVAVKMLK A +E
Sbjct: 818 RLPYDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCKTVAVKMLKEGATHSE 877
Query: 228 REALMSELKVLSYLGNHMNIVNLLGACTI-GGPTLVITEYCCYGDLLNFLRRKRDSFICS 404
ALMSELK+L ++G+H+N+VNLLGACT GGP +VI E+C +G+L +LR KR+ F+
Sbjct: 878 HRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPY 937
Query: 405 K---------QEDHAEAALY-KNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADKRRSA 554
K +E E + K L S SS S +++ +++ K
Sbjct: 938 KTKGARFRQGKEYVGEITMDPKRRLDSITSSQSSASSGFVEEKS---------------- 981
Query: 555 RIGSYIERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASKNCIHRDLAARNILLTH 734
+ E +V+ + +S+QVAKGM FLAS+ CIHRDLAARNILL+
Sbjct: 982 -LSDVEEEEVSEDLYKNFLTLEHLIC---YSFQVAKGMEFLASRKCIHRDLAARNILLSE 1037
Query: 735 GRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWEL 914
+ KICDFGLARDI D +YV KG+ARLP+KWMAPE+IF+ VYT +SDVWS+G+ LWE+
Sbjct: 1038 KNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEI 1097
Query: 915 FSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLKRPTFKQIVQ 1094
FSLG+SPYPG+ +D +F + +KEG RM +P++ EMY M CW +P +RPTF ++V+
Sbjct: 1098 FSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPNQRPTFSELVE 1157
>ref|NP_001184028.1| proto-oncogene tyrosine-protein kinase receptor Ret [Canis lupus
familiaris].
Length = 1108
Score = 261 bits (666), Expect = 1e-69
Identities = 148/378 (39%), Positives = 209/378 (55%)
Frame = +3
Query: 27 NYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLK 206
N V +D ++P D KWEFPR L GKTLG G FGKVV+ATA+ L TVAVKMLK
Sbjct: 696 NQVSVDAFKIPEDPKWEFPRKNLVLGKTLGEGEFGKVVKATAFRLKGKAGYTTVAVKMLK 755
Query: 207 PSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKR 386
+A +E L+SE +L + NH +++ L GAC+ GP +I EY YG L FLR R
Sbjct: 756 ENASPSELRDLLSEFNLLKQV-NHPHVIKLYGACSQDGPLFLIVEYAKYGSLRGFLRESR 814
Query: 387 DSFICSKQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADKRRSARIGS 566
K G YV R S+ + +
Sbjct: 815 --------------------------------------KAGPGYV--GSGGSRSSSYLDN 834
Query: 567 YIERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRIT 746
ER +T + SF++Q+++GM +LA +HRDLAARN+L+ GR
Sbjct: 835 PEERALTMGDLI------------SFAWQISRGMRYLAEMKLVHRDLAARNVLVAEGRKM 882
Query: 747 KICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLG 926
KI DFGL+RD+ + +YV + R+PVKWMA ES+F+ +YT +SDVWS+G+ LWE+ +LG
Sbjct: 883 KISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLG 942
Query: 927 SSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLKRPTFKQIVQLIEK 1106
+PYPG+P + + + ++K G+RM P++ EMY +M CW +P KRP F I + +EK
Sbjct: 943 GNPYPGIPPE-RLFNLLKTGYRMERPDNCSEEMYGLMLQCWKQEPDKRPVFADISKDLEK 1001
Query: 1107 QISESTNHIYSNLANCSP 1160
+ + N Y +LA +P
Sbjct: 1002 MMVK--NRDYLDLAASTP 1017
>ref|XP_545926.2| PREDICTED: similar to Fibroblast growth factor receptor 3 precursor
(FGFR-3) [Canis familiaris].
Length = 833
Score = 246 bits (628), Expect = 3e-65
Identities = 142/372 (38%), Positives = 204/372 (54%), Gaps = 2/372 (0%)
Frame = +3
Query: 39 IDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAA--MTVAVKMLKPS 212
+ +LP D KWE R RL+ GK LG G FG+VV A A G+ K AA +TVAVKMLK
Sbjct: 481 VSELELPADPKWELSRARLTLGKPLGEGCFGQVVMAEAIGIDKDRAAKPVTVAVKMLKDD 540
Query: 213 AHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDS 392
A + L+SE++++ +G H NI+NLLGACT GGP V+ EY G+L +LR +R
Sbjct: 541 ATDKDLSDLVSEMEMMKMIGRHKNIINLLGACTQGGPLYVLVEYAAKGNLREYLRARRPP 600
Query: 393 FICSKQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADKRRSARIGSYI 572
+ + + L ++ +C D + + G+ Y+ K I
Sbjct: 601 GM--------DYSFDTCKLPEEQLTCKDLVSCAYQVARGMEYLASQKC-----------I 641
Query: 573 ERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKI 752
RD LAARN+L+T + KI
Sbjct: 642 HRD-----------------------------------------LAARNVLVTEDNVMKI 660
Query: 753 CDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSS 932
DFGLARD+ N Y N RLPVKWMAPE++F+ VYT +SDVWS+G+ LWE+F+LG S
Sbjct: 661 ADFGLARDVHNLDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGS 720
Query: 933 PYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLKRPTFKQIVQLIEKQI 1112
PYPG+PV+ + +K++KEG RM P + ++Y IM+ CW A P +RPTFKQ+V+ +++ +
Sbjct: 721 PYPGIPVE-ELFKLLKEGHRMDKPANCTHDLYMIMRECWHAVPSQRPTFKQLVEDLDRIL 779
Query: 1113 SESTNHIYSNLA 1148
+ ++ Y +L+
Sbjct: 780 TVTSTDEYLDLS 791
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 52,661,134
Number of extensions: 1416885
Number of successful extensions: 6472
Number of sequences better than 1.0e-05: 564
Number of HSP's gapped: 5461
Number of HSP's successfully gapped: 705
Length of query: 431
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 325
Effective length of database: 15,340,888
Effective search space: 4985788600
Effective search space used: 4985788600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012637
(1294 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001037990.1| mast/stem cell growth factor receptor precur... 820 0.0
Alignment gi|XP_003124148.2| PREDICTED: macrophage colony-stimulating fac... 435 e-122
Alignment gi|XP_003354407.1| PREDICTED: beta-type platelet-derived growth... 403 e-112
Alignment gi|XP_003130961.2| PREDICTED: FL cytokine receptor-like [Sus sc... 373 e-103
Alignment gi|XP_001925775.3| PREDICTED: LOW QUALITY PROTEIN: vascular end... 329 2e-90
Alignment gi|XP_003129035.2| PREDICTED: vascular endothelial growth facto... 326 2e-89
Alignment gi|XP_003123684.1| PREDICTED: vascular endothelial growth facto... 324 6e-89
Alignment gi|XP_003356969.1| PREDICTED: alpha-type platelet-derived growt... 306 1e-83
Alignment gi|XP_001926404.3| PREDICTED: proto-oncogene tyrosine-protein k... 261 6e-70
Alignment gi|NP_001093394.1| fibroblast growth factor receptor 2 [Sus scr... 237 1e-62
>ref|NP_001037990.1| mast/stem cell growth factor receptor precursor [Sus scrofa].
Length = 972
Score = 820 bits (2119), Expect = 0.0
Identities = 404/418 (96%), Positives = 404/418 (96%)
Frame = +3
Query: 3 VVEEINGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAM 182
VVEEINGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAM
Sbjct: 555 VVEEINGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAM 614
Query: 183 TVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDL 362
TVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDL
Sbjct: 615 TVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDL 674
Query: 363 LNFLRRKRDSFICSKQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADK 542
LNFLRRKRDSFICSKQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADK
Sbjct: 675 LNFLRRKRDSFICSKQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADK 734
Query: 543 RRSARIGSYIERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASKNCIHRDLAARNI 722
RRSARIGSYIERDVTPAIM SFSYQVAKGMAFLASKNCIHRDLAARNI
Sbjct: 735 RRSARIGSYIERDVTPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNI 794
Query: 723 LLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIF 902
LLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIF
Sbjct: 795 LLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIF 854
Query: 903 LWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLKRPTFK 1082
LWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAP EMYDIMKTCWDADPLKRPTFK
Sbjct: 855 LWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFK 914
Query: 1083 QIVQLIEKQISESTNHIYSNLANCSPHRENPAVDHSVRINSVGSSASSTQPLLVHEDV 1256
QIVQLIEKQISESTNHIYSNLANCSPHRENPAVDHSVRINSVGSSASSTQPLLVHEDV
Sbjct: 915 QIVQLIEKQISESTNHIYSNLANCSPHRENPAVDHSVRINSVGSSASSTQPLLVHEDV 972
>ref|XP_003124148.2| PREDICTED: macrophage colony-stimulating factor 1 receptor, partial
[Sus scrofa].
Length = 941
Score = 435 bits (1118), Expect = e-122
Identities = 224/401 (55%), Positives = 279/401 (69%), Gaps = 10/401 (2%)
Frame = +3
Query: 3 VVEEINGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAM 182
++E GN+Y +IDPTQLPY KWEFPRN+L FGKTLGAGAFGKVVEATA+GL + DA +
Sbjct: 554 IIESFAGNSYTFIDPTQLPYSEKWEFPRNKLQFGKTLGAGAFGKVVEATAFGLGQEDAVL 613
Query: 183 TVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDL 362
VAVKMLK +AH E+EALMSELK++S+LG H N VNLLGACT GGP LVITEYCCYGDL
Sbjct: 614 KVAVKMLKSTAHADEKEALMSELKIMSHLGPHENTVNLLGACTHGGPVLVITEYCCYGDL 673
Query: 363 LNFLRRKRDSFI---CSKQEDHAEAALYKNLLHSKESSCSDS------TNEYMDMKPGVS 515
LNFLRRK ++ + + + YKN+ K+ + DS + Y++M+P
Sbjct: 674 LNFLRRKAEAMLGPGLNPGQSPEPGPGYKNIPLEKKYTRRDSGFSSQGVDAYVEMRP--- 730
Query: 516 YVVPTKADKRRSARIGSYIERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASKNCI 695
V T + S+ E+D+ FS QVA+GMAFLASKNCI
Sbjct: 731 --VSTSSSN------DSFSEQDLDKE----DGRPLELCDLLRFSSQVAQGMAFLASKNCI 778
Query: 696 HRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFE 875
HRD+AARN+LLT G + KI DFGLARDI NDSNY+VKGNARLPVKWMAPESIF+CVYT +
Sbjct: 779 HRDVAARNVLLTSGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQ 838
Query: 876 SDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDA 1055
SDVWSYGI LWE+FSLG +PYPG+ V+SKFYK++K+G++M P AP +Y IM+ CW
Sbjct: 839 SDVWSYGILLWEIFSLGLNPYPGILVNSKFYKLVKDGYQMAQPAFAPKNIYSIMQACWAL 898
Query: 1056 DPLKRPTFKQIVQLIEKQI-SESTNHIYSNLANCSPHRENP 1175
+P +RPTF+QI L+++Q + YSNL + S P
Sbjct: 899 EPTRRPTFQQICSLLQEQSHGDQRARDYSNLPSSSSSSSEP 939
>ref|XP_003354407.1| PREDICTED: beta-type platelet-derived growth factor receptor-like
[Sus scrofa].
Length = 913
Score = 403 bits (1036), Expect = e-112
Identities = 210/417 (50%), Positives = 265/417 (63%), Gaps = 24/417 (5%)
Frame = +3
Query: 3 VVEEINGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAM 182
++E GN+Y +IDPTQLPY KWEFPRN+L FGKTLGAGAFGKVVEATA+GL + DA +
Sbjct: 377 IIESFAGNSYTFIDPTQLPYSEKWEFPRNKLQFGKTLGAGAFGKVVEATAFGLGQEDAVL 436
Query: 183 TVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDL 362
VAVKMLK +AH E+EALMSELK++S+LG H N VNLLGACT GGP +ITEYC YGDL
Sbjct: 437 KVAVKMLKSTAHADEKEALMSELKIMSHLGPHENTVNLLGACTHGGPIYIITEYCRYGDL 496
Query: 363 LNFLRRKRDSFI--CSKQEDHAEAALYKNLLH------SKESSCSDSTNEYMDMKPGVSY 518
++FL R + +F+ CS + A LY N L S + +S YMDM S
Sbjct: 497 VDFLHRNKHTFLQRCSDKRRPPSAELYSNALPVGLPLPSHVALPGESDGGYMDMSKDESV 556
Query: 519 VVPTKADKRRSAR----------------IGSYIERDVTPAIMXXXXXXXXXXXXXSFSY 650
D R + + S ER P ++ FSY
Sbjct: 557 DYVPMLDMRGDVKYADIQPSGYMAPYDNCVPSAPERTCRPTLINESPVLSYTDLV-GFSY 615
Query: 651 QVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVK 830
QVA GM FLASKNC+HRDLAARN+L+ G++ KICDFGLARDI DSNY+ KG+ LP+K
Sbjct: 616 QVANGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMRDSNYISKGSTFLPLK 675
Query: 831 WMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEH 1010
WMAPESIFN +YT SDVWS+GI LWE+F+LG +PYP +P++ +FY IK G+RM P H
Sbjct: 676 WMAPESIFNSLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNEQFYNAIKRGYRMAQPAH 735
Query: 1011 APVEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISESTNHIYSNLANCSPHRENPAV 1181
A E+Y+IM+ CW+ RP F Q+V L+E+ + E Y + ++PAV
Sbjct: 736 ASDEIYEIMQKCWEEKFEIRPPFSQLVLLLERLLGEGYKKKYQQVDEEFLRSDHPAV 792
>ref|XP_003130961.2| PREDICTED: FL cytokine receptor-like [Sus scrofa].
Length = 594
Score = 373 bits (958), Expect = e-103
Identities = 192/382 (50%), Positives = 251/382 (65%), Gaps = 9/382 (2%)
Frame = +3
Query: 24 NNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKML 203
N+Y YID + YD KWEFPR L FGK LG+GAFGKV+ ATAYG+ K+ ++ VAVKML
Sbjct: 191 NDYFYIDFREYEYDLKWEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKML 250
Query: 204 KPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRK 383
K A +EREALMSELK++++LG+H NIVNLLGACT+ GP +I EYCCYGDLLN+LR K
Sbjct: 251 KEKADSSEREALMSELKMMTHLGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSK 310
Query: 384 RDSFICSKQEDHAEA--ALYKNLLHSKESSCSDSTNEYM--DMKP-----GVSYVVPTKA 536
R+ F + E E + Y SS S + D P G S+ +
Sbjct: 311 REKFHRTWTEIFKEHNFSFYPTFQSHPNSSMPGSREVQIHPDSDPISGFNGNSFQSEDEI 370
Query: 537 DKRRSARIGSYIERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASKNCIHRDLAAR 716
+ R+ + +V F+YQVAKGM FL K+C+HRDLAAR
Sbjct: 371 EYENQKRLEEEEDLNVLT-----------FEDLLCFAYQVAKGMEFLEFKSCVHRDLAAR 419
Query: 717 NILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYG 896
N+L+THG++ KI DFGLARDI +DSNYV++GNARLPVKWMAPES+F +YT +SDVWSYG
Sbjct: 420 NVLVTHGKVVKIGDFGLARDIMSDSNYVIRGNARLPVKWMAPESLFEGIYTIKSDVWSYG 479
Query: 897 IFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLKRPT 1076
I LWE+FSLG +PYPG+P D+ FYK+I+ GF+M P +A E+Y IM++CW D KRP+
Sbjct: 480 ILLWEIFSLGVNPYPGIPADANFYKLIQSGFKMDQPFYATEEIYFIMQSCWAFDSRKRPS 539
Query: 1077 FKQIVQLIEKQISESTNHIYSN 1142
F + + Q++++ +Y N
Sbjct: 540 FPNLTSFLGCQLADAEEAMYQN 561
>ref|XP_001925775.3| PREDICTED: LOW QUALITY PROTEIN: vascular endothelial growth factor
receptor 1 [Sus scrofa].
Length = 1347
Score = 329 bits (843), Expect = 2e-90
Identities = 177/359 (49%), Positives = 233/359 (64%), Gaps = 7/359 (1%)
Frame = +3
Query: 51 QLPYD-HKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTE 227
+LPYD KWEF R RL GK+LG GAFGKVV+A+A+G+ KS TVAVKMLK A +E
Sbjct: 820 RLPYDASKWEFARERLKLGKSLGRGAFGKVVQASAFGIKKSPTCRTVAVKMLKEGATASE 879
Query: 228 REALMSELKVLSYLGNHMNIVNLLGACTI-GGPTLVITEYCCYGDLLNFLRRKRDSFICS 404
+ALM+ELK+L+++G+H+N+VNLLGACT GGP +VI EYC YG+L N+L+ KR F +
Sbjct: 880 YKALMTELKILTHIGHHLNVVNLLGACTKQGGPLMVIVEYCKYGNLSNYLKSKRALFFIN 939
Query: 405 KQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADKRRSARIGSYIERDV 584
K +AAL+ K D +PG + + A G ++ +
Sbjct: 940 K-----DAALHVEPKKEKMEP---------DPEPGKKQRLDSVTSSESFASSGFQEDKSL 985
Query: 585 TPAIMXXXXXXXXXXXXX-----SFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITK 749
+ A S+S+QVA+GM FL+S+ CIHRDLAARNILL+ + K
Sbjct: 986 SDAEEEEDSDDFYKQPITMEDLISYSFQVARGMEFLSSRKCIHRDLAARNILLSENNVVK 1045
Query: 750 ICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGS 929
ICDFGLARDI + +YV KG+ RLP+KWMAPESIF+ +Y+ +SDVWSYG+ LWE+FSLG
Sbjct: 1046 ICDFGLARDIYKNPDYVRKGDTRLPLKWMAPESIFDKIYSTKSDVWSYGVLLWEIFSLGG 1105
Query: 930 SPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLKRPTFKQIVQLIEK 1106
SPYPG+ +D F +KEG RM +PE+A E+Y IM CW DP +RP F V+L+EK
Sbjct: 1106 SPYPGVQMDEDFCSRLKEGVRMRAPEYATPEIYQIMLDCWHKDPKERPRF---VELVEK 1161
>ref|XP_003129035.2| PREDICTED: vascular endothelial growth factor receptor 2 [Sus
scrofa].
Length = 1347
Score = 326 bits (836), Expect = 2e-89
Identities = 173/360 (48%), Positives = 234/360 (65%), Gaps = 12/360 (3%)
Frame = +3
Query: 51 QLPYD-HKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTE 227
+LPYD KWEFPR+RL GK LG GAFG+V+EA A+G+ K+ TVAVKMLK A +E
Sbjct: 810 RLPYDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCKTVAVKMLKEGATHSE 869
Query: 228 REALMSELKVLSYLGNHMNIVNLLGACTI-GGPTLVITEYCCYGDLLNFLRRKRDSFICS 404
ALMSELK+L ++G+H+N+VNLLGACT GGP +VI E+C +G+L +LR KR+ F+
Sbjct: 870 HRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPY 929
Query: 405 KQED--HAEAALY--------KNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADKRRSA 554
K + + Y K L S SS S +++ +++ K
Sbjct: 930 KTKGARFRQGKEYVGEITVDPKRRLDSITSSQSSASSGFVEEKS---------------- 973
Query: 555 RIGSYIERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASKNCIHRDLAARNILLTH 734
+ E +V+ + +S+QVAKGM FLAS+ CIHRDLAARNILL+
Sbjct: 974 -LSDVEEEEVSEDLYKNFLTLEHLIC---YSFQVAKGMEFLASRKCIHRDLAARNILLSE 1029
Query: 735 GRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWEL 914
+ KICDFGLARDI D +YV KG+ARLP+KWMAPE+IF+ VYT +SDVWS+G+ LWE+
Sbjct: 1030 KNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEI 1089
Query: 915 FSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLKRPTFKQIVQ 1094
FSLG+SPYPG+ +D +F + +KEG RM +P++ EMY M CW +P +RPTF ++V+
Sbjct: 1090 FSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVE 1149
>ref|XP_003123684.1| PREDICTED: vascular endothelial growth factor receptor 3-like [Sus
scrofa].
Length = 1389
Score = 324 bits (831), Expect = 6e-89
Identities = 169/367 (46%), Positives = 241/367 (65%), Gaps = 11/367 (2%)
Frame = +3
Query: 33 VYIDPTQLPYDHK----------WEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAM 182
+ +DP ++P + + WEFPR RL G+ LG GAFGKVVEA+A+G+ K +
Sbjct: 841 IIMDPGEVPLEEQCEYLSYDASQWEFPRERLHLGRVLGHGAFGKVVEASAFGINKGSSCD 900
Query: 183 TVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTI-GGPTLVITEYCCYGD 359
TVAVKMLK A +E ALMSELK+L ++GNH+N+VNLLGACT GP +VI E+C YG+
Sbjct: 901 TVAVKMLKEGATASEHRALMSELKILIHIGNHLNVVNLLGACTKPNGPLMVIVEFCKYGN 960
Query: 360 LLNFLRRKRDSFICSKQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKAD 539
L NFLR KR++F ++ + +++++ ES+ +D + ++ ++ K
Sbjct: 961 LSNFLRAKREAFNPYAEKTLEQRRRFRSMV---ESAKADRRRPGTSDRALLTKLLTGKGG 1017
Query: 540 KRRSARIGSYIERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASKNCIHRDLAARN 719
R+ + + ++P M +S+QVA+GM FLAS+ CIHRDLAARN
Sbjct: 1018 AGRAPLVQEAEDLWLSPLTMEDLVC---------YSFQVARGMEFLASRKCIHRDLAARN 1068
Query: 720 ILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGI 899
ILL+ + KICDFGLARDI D +YV KG+ARLP+KWMAPESIF+ VYT +SDVWS+G+
Sbjct: 1069 ILLSESDVVKICDFGLARDIYKDPDYVRKGSARLPLKWMAPESIFDKVYTTQSDVWSFGV 1128
Query: 900 FLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLKRPTF 1079
LWE+FSLG+SPYPG+ ++ +F + +KEG RM +PE A + IM +CW +P +RP F
Sbjct: 1129 LLWEIFSLGASPYPGVQINEEFCQRLKEGTRMRAPELATPAIRRIMLSCWAGEPKERPAF 1188
Query: 1080 KQIVQLI 1100
+V+++
Sbjct: 1189 SDLVEIL 1195
>ref|XP_003356969.1| PREDICTED: alpha-type platelet-derived growth factor receptor-like,
partial [Sus scrofa].
Length = 451
Score = 306 bits (785), Expect = 1e-83
Identities = 165/339 (48%), Positives = 215/339 (63%), Gaps = 22/339 (6%)
Frame = +3
Query: 231 EALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKQ 410
+ALMSELK++++LG H+NIVNLLGACT GP +ITEYC YGDL+N+L + RDSF+
Sbjct: 1 QALMSELKIMTHLGPHLNIVNLLGACTKSGPIYIITEYCFYGDLVNYLHKNRDSFLSRHP 60
Query: 411 EDHAEAALYKNLLHSKESSCS------DSTNEYMDMKPG--VSYV-------VPTKADKR 545
E + L + ES+ S ++ +YMDMK YV V +D +
Sbjct: 61 EKPKKELDIFGLNPADESTRSYVILSFENNGDYMDMKQADTTQYVPMLERKEVSKYSDIQ 120
Query: 546 RSA--RIGSY-----IERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASKNCIHRD 704
RS R SY ++ +V + SF+YQVA+GM FLASKNC+HRD
Sbjct: 121 RSLYDRPASYKKKSMLDSEVKNLLSDDNSDGLTLLDLLSFTYQVARGMEFLASKNCVHRD 180
Query: 705 LAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDV 884
LAARN+LL G+I KICDFGLARDI +DSNYV KG+ LPVKWMAPESIF+ +YT SDV
Sbjct: 181 LAARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESIFDNLYTTLSDV 240
Query: 885 WSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPL 1064
WSYGI LWE+FSLG +PYPGM VDS FY IK G+RM P+HA E+Y+IM CW+++P
Sbjct: 241 WSYGILLWEIFSLGGTPYPGMMVDSTFYNKIKSGYRMAKPDHATSEVYEIMVKCWNSEPE 300
Query: 1065 KRPTFKQIVQLIEKQISESTNHIYSNLANCSPHRENPAV 1181
KRP+F + +++E + Y + ++PAV
Sbjct: 301 KRPSFYHLSEIVENLLPGQYKKSYEKIHLDFLKSDHPAV 339
>ref|XP_001926404.3| PREDICTED: proto-oncogene tyrosine-protein kinase receptor Ret [Sus
scrofa].
Length = 1076
Score = 261 bits (667), Expect = 6e-70
Identities = 148/378 (39%), Positives = 210/378 (55%)
Frame = +3
Query: 27 NYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLK 206
N V +D ++P D KWEFPR L GKTLG G FGKVV+ATA+ L TVAVKMLK
Sbjct: 664 NPVSVDAFKIPEDPKWEFPRKNLVLGKTLGEGEFGKVVKATAFRLKGKAGYTTVAVKMLK 723
Query: 207 PSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKR 386
+A +E L+SE +L + NH ++ L GAC+ GP L+I EY YG L FLR R
Sbjct: 724 ENASPSELRDLLSEFNLLKQV-NHPQVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESR 782
Query: 387 DSFICSKQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADKRRSARIGS 566
K G YV R S+ + +
Sbjct: 783 --------------------------------------KAGPGYV--GSGGSRHSSYLDN 802
Query: 567 YIERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRIT 746
ER +T + SF++Q+++GM +LA +HRDLAARN+L+ GR
Sbjct: 803 PEERALTMGDLI------------SFAWQISRGMQYLAEMKLVHRDLAARNVLVAEGRRM 850
Query: 747 KICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLG 926
KI DFGL+RD+ + +YV + R+PVKWMA ES+F+ +YT +SDVWS+G+ LWE+ +LG
Sbjct: 851 KISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLG 910
Query: 927 SSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLKRPTFKQIVQLIEK 1106
+PYPG+P + + + ++K G+RM P++ EMY +M CW +P KRP F I + ++K
Sbjct: 911 GNPYPGIPPE-RLFNLLKTGYRMERPDNCSEEMYSLMLQCWKQEPDKRPVFADISKDLDK 969
Query: 1107 QISESTNHIYSNLANCSP 1160
+ +S + Y +LA +P
Sbjct: 970 MMVKSRD--YLDLAASTP 985
>ref|NP_001093394.1| fibroblast growth factor receptor 2 [Sus scrofa].
Length = 822
Score = 237 bits (604), Expect = 1e-62
Identities = 145/370 (39%), Positives = 212/370 (57%), Gaps = 4/370 (1%)
Frame = +3
Query: 51 QLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDA--AMTVAVKMLKPSAHLT 224
+LP D KWEFPR++L+ GK LG G FG+VV A A G+ K A+TVAVKMLK A T
Sbjct: 468 ELPEDPKWEFPRDKLTLGKPLGEGCFGQVVMAEAVGIDKEKPKEAVTVAVKMLKDDA--T 525
Query: 225 EREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICS 404
E++ LS L + M ++ ++G + +++N L C+
Sbjct: 526 EKD--------LSDLVSEMEMMKMIGK---------------HKNIINLLGA------CT 556
Query: 405 KQEDHAEAALYKNLLHSKESSCSDSTNEYMDMK--PGVSYVVPTKADKRRSARIGSYIER 578
+ + LY + E + + EY+ + PG+ Y S + E
Sbjct: 557 Q-----DGPLYVIV----EYASKGNLREYLRARRPPGMEY----------SYDVNRVPEE 597
Query: 579 DVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICD 758
+T S +YQ+A+GM +LAS+ CIHRDLAARN+L+T + KI D
Sbjct: 598 QMT------------FKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIAD 645
Query: 759 FGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPY 938
FGLARDI N Y N RLPVKWMAPE++F+ VYT +SDVWS+G+ +WE+F+LG SPY
Sbjct: 646 FGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPY 705
Query: 939 PGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISE 1118
PG+PV+ + +K++KEG RM P + E+Y +M+ CW A P +RPTFKQ+V+ +++ ++
Sbjct: 706 PGIPVE-ELFKLLKEGHRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTL 764
Query: 1119 STNHIYSNLA 1148
+TN Y +L+
Sbjct: 765 TTNEDYLDLS 774
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,434,519
Number of extensions: 883009
Number of successful extensions: 3713
Number of sequences better than 1.0e-05: 274
Number of HSP's gapped: 3276
Number of HSP's successfully gapped: 335
Length of query: 431
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 329
Effective length of database: 8,804,438
Effective search space: 2896660102
Effective search space used: 2896660102
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012637
(1294 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001116205.1| mast/stem cell growth factor receptor isofor... 772 0.0
Alignment gi|NP_066922.2| mast/stem cell growth factor receptor isoform 2... 772 0.0
Alignment gi|NP_001032948.2| macrophage colony-stimulating factor 1 recep... 441 e-124
Alignment gi|NP_001076785.1| alpha-type platelet-derived growth factor re... 402 e-112
Alignment gi|NP_035188.2| alpha-type platelet-derived growth factor recep... 402 e-112
Alignment gi|NP_001139740.1| beta-type platelet-derived growth factor rec... 380 e-105
Alignment gi|NP_032835.2| beta-type platelet-derived growth factor recept... 380 e-105
Alignment gi|NP_034359.2| FL cytokine receptor [Mus musculus]. 375 e-104
Alignment gi|NP_034358.2| vascular endothelial growth factor receptor 1 p... 335 5e-92
Alignment gi|NP_032055.1| vascular endothelial growth factor receptor 3 p... 327 2e-89
>ref|NP_001116205.1| mast/stem cell growth factor receptor isoform 1 [Mus musculus].
Length = 979
Score = 772 bits (1993), Expect = 0.0
Identities = 381/418 (91%), Positives = 393/418 (94%), Gaps = 1/418 (0%)
Frame = +3
Query: 3 VVEEINGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAM 182
VVEEINGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAM
Sbjct: 562 VVEEINGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAM 621
Query: 183 TVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDL 362
TVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACT+GGPTLVITEYCCYGDL
Sbjct: 622 TVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTVGGPTLVITEYCCYGDL 681
Query: 363 LNFLRRKRDSFICSKQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADK 542
LNFLRRKRDSFI SKQE+ AEAALYKNLLHS E SC DS+NEYMDMKPGVSYVVPTK DK
Sbjct: 682 LNFLRRKRDSFIFSKQEEQAEAALYKNLLHSTEPSC-DSSNEYMDMKPGVSYVVPTKTDK 740
Query: 543 RRSARIGSYIERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASKNCIHRDLAARNI 722
RRSARI SYIERDVTPAIM SFSYQVAKGMAFLASKNCIHRDLAARNI
Sbjct: 741 RRSARIDSYIERDVTPAIMEDDELALDLDDLLSFSYQVAKGMAFLASKNCIHRDLAARNI 800
Query: 723 LLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIF 902
LLTHGRITKICDFGLARDI+NDSNYVVKGNARLPVKWMAPESIF+CVYTFESDVWSYGIF
Sbjct: 801 LLTHGRITKICDFGLARDIRNDSNYVVKGNARLPVKWMAPESIFSCVYTFESDVWSYGIF 860
Query: 903 LWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLKRPTFK 1082
LWELFSLGSSPYPGMPVDSKFYKMIKEGFRM+SPEHAP EMYD+MKTCWDADPLKRPTFK
Sbjct: 861 LWELFSLGSSPYPGMPVDSKFYKMIKEGFRMVSPEHAPAEMYDVMKTCWDADPLKRPTFK 920
Query: 1083 QIVQLIEKQISESTNHIYSNLANCSPHRENP-AVDHSVRINSVGSSASSTQPLLVHED 1253
Q+VQLIEKQIS+ST HIYSNLANC+P+ ENP VDHSVR+NSVGSSASSTQPLLVHED
Sbjct: 921 QVVQLIEKQISDSTKHIYSNLANCNPNPENPVVVDHSVRVNSVGSSASSTQPLLVHED 978
>ref|NP_066922.2| mast/stem cell growth factor receptor isoform 2 [Mus musculus].
Length = 975
Score = 772 bits (1993), Expect = 0.0
Identities = 381/418 (91%), Positives = 393/418 (94%), Gaps = 1/418 (0%)
Frame = +3
Query: 3 VVEEINGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAM 182
VVEEINGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAM
Sbjct: 558 VVEEINGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAM 617
Query: 183 TVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDL 362
TVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACT+GGPTLVITEYCCYGDL
Sbjct: 618 TVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTVGGPTLVITEYCCYGDL 677
Query: 363 LNFLRRKRDSFICSKQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADK 542
LNFLRRKRDSFI SKQE+ AEAALYKNLLHS E SC DS+NEYMDMKPGVSYVVPTK DK
Sbjct: 678 LNFLRRKRDSFIFSKQEEQAEAALYKNLLHSTEPSC-DSSNEYMDMKPGVSYVVPTKTDK 736
Query: 543 RRSARIGSYIERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASKNCIHRDLAARNI 722
RRSARI SYIERDVTPAIM SFSYQVAKGMAFLASKNCIHRDLAARNI
Sbjct: 737 RRSARIDSYIERDVTPAIMEDDELALDLDDLLSFSYQVAKGMAFLASKNCIHRDLAARNI 796
Query: 723 LLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIF 902
LLTHGRITKICDFGLARDI+NDSNYVVKGNARLPVKWMAPESIF+CVYTFESDVWSYGIF
Sbjct: 797 LLTHGRITKICDFGLARDIRNDSNYVVKGNARLPVKWMAPESIFSCVYTFESDVWSYGIF 856
Query: 903 LWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLKRPTFK 1082
LWELFSLGSSPYPGMPVDSKFYKMIKEGFRM+SPEHAP EMYD+MKTCWDADPLKRPTFK
Sbjct: 857 LWELFSLGSSPYPGMPVDSKFYKMIKEGFRMVSPEHAPAEMYDVMKTCWDADPLKRPTFK 916
Query: 1083 QIVQLIEKQISESTNHIYSNLANCSPHRENP-AVDHSVRINSVGSSASSTQPLLVHED 1253
Q+VQLIEKQIS+ST HIYSNLANC+P+ ENP VDHSVR+NSVGSSASSTQPLLVHED
Sbjct: 917 QVVQLIEKQISDSTKHIYSNLANCNPNPENPVVVDHSVRVNSVGSSASSTQPLLVHED 974
>ref|NP_001032948.2| macrophage colony-stimulating factor 1 receptor precursor [Mus
musculus].
Length = 977
Score = 441 bits (1133), Expect = e-124
Identities = 226/391 (57%), Positives = 282/391 (72%), Gaps = 10/391 (2%)
Frame = +3
Query: 3 VVEEINGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAM 182
++E GN+Y +IDPTQLPY+ KWEFPRN L FGKTLGAGAFGKVVEATA+GL K DA +
Sbjct: 550 IIERYEGNSYTFIDPTQLPYNEKWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVL 609
Query: 183 TVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDL 362
VAVKMLK +AH E+EALMSELK++S+LG H NIVNLLGACT GGP LVITEYCCYGDL
Sbjct: 610 KVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDL 669
Query: 363 LNFLRRKRDSFI---CSKQEDHAEAALYKNLLHSKESSCSDS------TNEYMDMKPGVS 515
LNFLRRK ++ + S +D + YKN+ K+ DS + Y++M+P
Sbjct: 670 LNFLRRKAEAMLGPSLSPGQDSEGDSSYKNIHLEKKYVRRDSGFSSQGVDTYVEMRP--- 726
Query: 516 YVVPTKADKRRSARIGSYIERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASKNCI 695
V + +D S+ ++D+ FS QVA+GMAFLASKNCI
Sbjct: 727 -VSTSSSD--------SFFKQDLDKEASRPLELWDLLH----FSSQVAQGMAFLASKNCI 773
Query: 696 HRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFE 875
HRD+AARN+LLT G + KI DFGLARDI NDSNYVVKGNARLPVKWMAPESIF+CVYT +
Sbjct: 774 HRDVAARNVLLTSGHVAKIGDFGLARDIMNDSNYVVKGNARLPVKWMAPESIFDCVYTVQ 833
Query: 876 SDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDA 1055
SDVWSYGI LWE+FSLG +PYPG+ V++KFYK++K+G++M P AP +Y IM++CWD
Sbjct: 834 SDVWSYGILLWEIFSLGLNPYPGILVNNKFYKLVKDGYQMAQPVFAPKNIYSIMQSCWDL 893
Query: 1056 DPLKRPTFKQIVQLIEKQIS-ESTNHIYSNL 1145
+P +RPTF+QI L+++Q E + Y+NL
Sbjct: 894 EPTRRPTFQQICFLLQEQARLERRDQDYANL 924
>ref|NP_001076785.1| alpha-type platelet-derived growth factor receptor precursor [Mus
musculus].
Length = 1089
Score = 402 bits (1032), Expect = e-112
Identities = 212/417 (50%), Positives = 275/417 (65%), Gaps = 24/417 (5%)
Frame = +3
Query: 3 VVEEIN--GNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDA 176
V+E I+ G+ Y+Y+DP QLPYD +WEFPR+ L G+ LG+GAFGKVVE TAYGL +S
Sbjct: 561 VIESISPDGHEYIYVDPMQLPYDSRWEFPRDGLVLGRILGSGAFGKVVEGTAYGLSRSQP 620
Query: 177 AMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYG 356
M VAVKMLKP+A +E++ALMSELK++++LG H+NIVNLLGACT GP +ITEYC YG
Sbjct: 621 VMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKSGPIYIITEYCFYG 680
Query: 357 DLLNFLRRKRDSFICSKQEDHAEAALYKNLLHSKESSCS------DSTNEYMDMKPG--V 512
DL+N+L + RDSF+ E + L + ES+ S ++ +YMDMK
Sbjct: 681 DLVNYLHKNRDSFMSQHPEKPKKDLDIFGLNPADESTRSYVILSFENNGDYMDMKQADTT 740
Query: 513 SYV-------VPTKADKRRSA--RIGSY-----IERDVTPAIMXXXXXXXXXXXXXSFSY 650
YV V +D +RS R SY ++ +V + SF+Y
Sbjct: 741 QYVPMLERKEVSKYSDIQRSLYDRPASYKKKSMLDSEVKNLLSDDDSEGLTLLDLLSFTY 800
Query: 651 QVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVK 830
QVA+GM FLASKNC+HRDLAARN+LL G+I KICDFGLARDI +DSNYV KG+ LPVK
Sbjct: 801 QVARGMEFLASKNCVHRDLAARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGSTFLPVK 860
Query: 831 WMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEH 1010
WMAPESIF+ +YT SDVWSYGI LWE+FSLG +PYPGM VDS FY IK G+RM P+H
Sbjct: 861 WMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMMVDSTFYNKIKSGYRMAKPDH 920
Query: 1011 APVEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISESTNHIYSNLANCSPHRENPAV 1181
A E+Y+IM CW+++P KRP+F + +++E + Y + ++PAV
Sbjct: 921 ATSEVYEIMVQCWNSEPEKRPSFYHLSEIVENLLPGQYKKSYEKIHLDFLKSDHPAV 977
>ref|NP_035188.2| alpha-type platelet-derived growth factor receptor precursor [Mus
musculus].
Length = 1089
Score = 402 bits (1032), Expect = e-112
Identities = 212/417 (50%), Positives = 275/417 (65%), Gaps = 24/417 (5%)
Frame = +3
Query: 3 VVEEIN--GNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDA 176
V+E I+ G+ Y+Y+DP QLPYD +WEFPR+ L G+ LG+GAFGKVVE TAYGL +S
Sbjct: 561 VIESISPDGHEYIYVDPMQLPYDSRWEFPRDGLVLGRILGSGAFGKVVEGTAYGLSRSQP 620
Query: 177 AMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYG 356
M VAVKMLKP+A +E++ALMSELK++++LG H+NIVNLLGACT GP +ITEYC YG
Sbjct: 621 VMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKSGPIYIITEYCFYG 680
Query: 357 DLLNFLRRKRDSFICSKQEDHAEAALYKNLLHSKESSCS------DSTNEYMDMKPG--V 512
DL+N+L + RDSF+ E + L + ES+ S ++ +YMDMK
Sbjct: 681 DLVNYLHKNRDSFMSQHPEKPKKDLDIFGLNPADESTRSYVILSFENNGDYMDMKQADTT 740
Query: 513 SYV-------VPTKADKRRSA--RIGSY-----IERDVTPAIMXXXXXXXXXXXXXSFSY 650
YV V +D +RS R SY ++ +V + SF+Y
Sbjct: 741 QYVPMLERKEVSKYSDIQRSLYDRPASYKKKSMLDSEVKNLLSDDDSEGLTLLDLLSFTY 800
Query: 651 QVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVK 830
QVA+GM FLASKNC+HRDLAARN+LL G+I KICDFGLARDI +DSNYV KG+ LPVK
Sbjct: 801 QVARGMEFLASKNCVHRDLAARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGSTFLPVK 860
Query: 831 WMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEH 1010
WMAPESIF+ +YT SDVWSYGI LWE+FSLG +PYPGM VDS FY IK G+RM P+H
Sbjct: 861 WMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMMVDSTFYNKIKSGYRMAKPDH 920
Query: 1011 APVEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISESTNHIYSNLANCSPHRENPAV 1181
A E+Y+IM CW+++P KRP+F + +++E + Y + ++PAV
Sbjct: 921 ATSEVYEIMVQCWNSEPEKRPSFYHLSEIVENLLPGQYKKSYEKIHLDFLKSDHPAV 977
>ref|NP_001139740.1| beta-type platelet-derived growth factor receptor isoform 1 [Mus
musculus].
Length = 1099
Score = 380 bits (977), Expect = e-105
Identities = 202/419 (48%), Positives = 266/419 (63%), Gaps = 26/419 (6%)
Frame = +3
Query: 3 VVEEIN--GNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDA 176
V+E ++ G+ Y+Y+DP QLPYD WE PR++L G+TLG+GAFG+VVEATA+GL S A
Sbjct: 568 VIESVSSDGHEYIYVDPVQLPYDSTWELPRDQLVLGRTLGSGAFGQVVEATAHGLSHSQA 627
Query: 177 AMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYG 356
M VAVKMLK +A +E++ALMSELK++S+LG H+N+VNLLGACT GGP +ITEYC YG
Sbjct: 628 TMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNVVNLLGACTKGGPIYIITEYCRYG 687
Query: 357 DLLNFLRRKRDSFICSKQEDHA--EAALYKNL------LHSKESSCSDSTNEYMDMK--P 506
DL+++L R + +F+ H A LY N L S + +S YMDM
Sbjct: 688 DLVDYLHRNKHTFLQRHSNKHCPPSAELYSNALPVGFSLPSHLNLTGESDGGYMDMSKDE 747
Query: 507 GVSYV--VPTKAD-KRRSARIGSYI-----------ERDVTPAIMXXXXXXXXXXXXXSF 644
+ YV + K D K SY+ ER A + F
Sbjct: 748 SIDYVPMLDMKGDIKYADIESPSYMAPYDNYVPSAPERTYR-ATLINDSPVLSYTDLVGF 806
Query: 645 SYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLP 824
SYQVA GM FLASKNC+HRDLAARN+L+ G++ KICDFGLARDI DSNY+ KG+ LP
Sbjct: 807 SYQVANGMDFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMRDSNYISKGSTFLP 866
Query: 825 VKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSP 1004
+KWMAPESIFN +YT SDVWS+GI LWE+F+LG +PYP +P++ +FY IK G+RM P
Sbjct: 867 LKWMAPESIFNSLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNDQFYNAIKRGYRMAQP 926
Query: 1005 EHAPVEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISESTNHIYSNLANCSPHRENPAV 1181
HA E+Y+IM+ CW+ RP F Q+V L+E+ + E Y + ++PA+
Sbjct: 927 AHASDEIYEIMQKCWEEKFETRPPFSQLVLLLERLLGEGYKKKYQQVDEEFLRSDHPAI 985
>ref|NP_032835.2| beta-type platelet-derived growth factor receptor isoform 2 [Mus
musculus].
Length = 1098
Score = 380 bits (977), Expect = e-105
Identities = 202/419 (48%), Positives = 266/419 (63%), Gaps = 26/419 (6%)
Frame = +3
Query: 3 VVEEIN--GNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDA 176
V+E ++ G+ Y+Y+DP QLPYD WE PR++L G+TLG+GAFG+VVEATA+GL S A
Sbjct: 567 VIESVSSDGHEYIYVDPVQLPYDSTWELPRDQLVLGRTLGSGAFGQVVEATAHGLSHSQA 626
Query: 177 AMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYG 356
M VAVKMLK +A +E++ALMSELK++S+LG H+N+VNLLGACT GGP +ITEYC YG
Sbjct: 627 TMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNVVNLLGACTKGGPIYIITEYCRYG 686
Query: 357 DLLNFLRRKRDSFICSKQEDHA--EAALYKNL------LHSKESSCSDSTNEYMDMK--P 506
DL+++L R + +F+ H A LY N L S + +S YMDM
Sbjct: 687 DLVDYLHRNKHTFLQRHSNKHCPPSAELYSNALPVGFSLPSHLNLTGESDGGYMDMSKDE 746
Query: 507 GVSYV--VPTKAD-KRRSARIGSYI-----------ERDVTPAIMXXXXXXXXXXXXXSF 644
+ YV + K D K SY+ ER A + F
Sbjct: 747 SIDYVPMLDMKGDIKYADIESPSYMAPYDNYVPSAPERTYR-ATLINDSPVLSYTDLVGF 805
Query: 645 SYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLP 824
SYQVA GM FLASKNC+HRDLAARN+L+ G++ KICDFGLARDI DSNY+ KG+ LP
Sbjct: 806 SYQVANGMDFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMRDSNYISKGSTFLP 865
Query: 825 VKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSP 1004
+KWMAPESIFN +YT SDVWS+GI LWE+F+LG +PYP +P++ +FY IK G+RM P
Sbjct: 866 LKWMAPESIFNSLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNDQFYNAIKRGYRMAQP 925
Query: 1005 EHAPVEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISESTNHIYSNLANCSPHRENPAV 1181
HA E+Y+IM+ CW+ RP F Q+V L+E+ + E Y + ++PA+
Sbjct: 926 AHASDEIYEIMQKCWEEKFETRPPFSQLVLLLERLLGEGYKKKYQQVDEEFLRSDHPAI 984
>ref|NP_034359.2| FL cytokine receptor [Mus musculus].
Length = 1000
Score = 375 bits (964), Expect = e-104
Identities = 193/405 (47%), Positives = 257/405 (63%), Gaps = 2/405 (0%)
Frame = +3
Query: 24 NNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKML 203
N Y Y+D YD KWEFPR L FGK LG+GAFG+V+ ATAYG+ K+ ++ VAVKML
Sbjct: 588 NEYFYVDFRDYEYDLKWEFPRENLEFGKVLGSGAFGRVMNATAYGISKTGVSIQVAVKML 647
Query: 204 KPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRK 383
K A E+EALMSELK++++LG+H NIVNLLGACT+ GP +I EYCCYGDLLN+LR K
Sbjct: 648 KEKADSCEKEALMSELKMMTHLGHHDNIVNLLGACTLSGPVYLIFEYCCYGDLLNYLRSK 707
Query: 384 RDSFICSKQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADKRRSARIG 563
R+ F + E E S+ S + + + P + + + S
Sbjct: 708 REKFHRTWTEIFKEHNFSFYPTFQAHSNSSMPGSREVQLHPPLDQLSGFNGNLIHSEDEI 767
Query: 564 SYIERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRI 743
Y + F+YQVAKGM FL K+C+HRDLAARN+L+THG++
Sbjct: 768 EYENQKRLAEEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARNVLVTHGKV 827
Query: 744 TKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSL 923
KICDFGLARDI +DS+YVV+GNARLPVKWMAPES+F +YT +SDVWSYGI LWE+FSL
Sbjct: 828 VKICDFGLARDILSDSSYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSL 887
Query: 924 GSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLKRPTFKQIVQLIE 1103
G +PYPG+PVD+ FYK+I+ GF+M P +A +Y +M++CW D KRP+F + +
Sbjct: 888 GVNPYPGIPVDANFYKLIQSGFKMEQPFYATEGIYFVMQSCWAFDSRKRPSFPNLTSFLG 947
Query: 1104 KQISESTNHIYSNLANCSPHRENPAVDHSVR--INSVGSSASSTQ 1232
Q++E+ +Y N+ P E+P++ + R GS S Q
Sbjct: 948 CQLAEAEEAMYQNMGGNVP--EHPSIYQNRRPLSREAGSEPPSPQ 990
>ref|NP_034358.2| vascular endothelial growth factor receptor 1 precursor [Mus
musculus].
Length = 1333
Score = 335 bits (859), Expect = 5e-92
Identities = 178/354 (50%), Positives = 233/354 (65%), Gaps = 6/354 (1%)
Frame = +3
Query: 51 QLPYD-HKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTE 227
+LPYD KWEF R RL GK+LG GAFGKVV+A+A+G+ KS TVAVKMLK A +E
Sbjct: 813 RLPYDASKWEFARERLKLGKSLGRGAFGKVVQASAFGIKKSPTCRTVAVKMLKEGATASE 872
Query: 228 REALMSELKVLSYLGNHMNIVNLLGACTI-GGPTLVITEYCCYGDLLNFLRRKRDSFICS 404
+ALM+ELK+L+++G+H+N+VNLLGACT GGP +VI EYC YG+L N+L+ KRD F +
Sbjct: 873 YKALMTELKILTHIGHHLNVVNLLGACTKQGGPLMVIVEYCKYGNLSNYLKSKRDLFCLN 932
Query: 405 KQEDHAEAALYKNLL-HSKESSCSDSTNEYMDMKPGVSYVVPTKADKRRSARIGS---YI 572
K +AAL+ L S E +D S + + R + + Y
Sbjct: 933 K-----DAALHMELKKESLEPGLEQGQKPRLDSVSSSSVTSSSFPEDRSVSDVEGDEDYS 987
Query: 573 ERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKI 752
E P M S+S+QVA+GM FL+S+ CIHRDLAARNILL+ + KI
Sbjct: 988 EISKQPLTMEDLI---------SYSFQVARGMEFLSSRKCIHRDLAARNILLSENNVVKI 1038
Query: 753 CDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSS 932
CDFGLARDI + +YV +G+ RLP+KWMAPESIF+ VY+ +SDVWSYG+ LWE+FSLG S
Sbjct: 1039 CDFGLARDIYKNPDYVRRGDTRLPLKWMAPESIFDKVYSTKSDVWSYGVLLWEIFSLGGS 1098
Query: 933 PYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLKRPTFKQIVQ 1094
PYPG+ +D F +KEG RM +PE+A E+Y IM CW DP +RP F ++V+
Sbjct: 1099 PYPGVQMDEDFCSRLKEGMRMRTPEYATPEIYQIMLDCWHKDPKERPRFAELVE 1152
>ref|NP_032055.1| vascular endothelial growth factor receptor 3 precursor [Mus
musculus].
Length = 1363
Score = 327 bits (837), Expect = 2e-89
Identities = 171/367 (46%), Positives = 238/367 (64%), Gaps = 11/367 (2%)
Frame = +3
Query: 33 VYIDPTQLPYDHK----------WEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAM 182
+ +DP ++P + + WEFPR RL G+ LG GAFGKVVEA+A+G+ K +
Sbjct: 815 IIMDPGEVPLEEQCEYLSYDASQWEFPRERLHLGRVLGHGAFGKVVEASAFGINKGSSCD 874
Query: 183 TVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTI-GGPTLVITEYCCYGD 359
TVAVKMLK A +E ALMSELK+L ++GNH+N+VNLLGACT GP +VI E+C YG+
Sbjct: 875 TVAVKMLKEGATASEHRALMSELKILIHIGNHLNVVNLLGACTKPNGPLMVIVEFCKYGN 934
Query: 360 LLNFLRRKRDSFICSKQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKAD 539
L NFLR KRD+F ++ + ++ ++ E + +D + + + K
Sbjct: 935 LSNFLRVKRDTFNPYAEKSPEQRRRFRAMV---EGAKADRRRPGSSDRALFTRFLMGKGS 991
Query: 540 KRRSARIGSYIERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASKNCIHRDLAARN 719
RR+ + + ++P M +S+QVA+GM FLAS+ CIHRDLAARN
Sbjct: 992 ARRAPLVQEAEDLWLSPLTMEDLVC---------YSFQVARGMEFLASRKCIHRDLAARN 1042
Query: 720 ILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGI 899
ILL+ I KICDFGLARDI D +YV KG+ARLP+KWMAPESIF+ VYT +SDVWS+G+
Sbjct: 1043 ILLSESDIVKICDFGLARDIYKDPDYVRKGSARLPLKWMAPESIFDKVYTTQSDVWSFGV 1102
Query: 900 FLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLKRPTF 1079
LWE+FSLG+SPYPG+ ++ +F + +K+G RM +PE A + IM++CW DP RP F
Sbjct: 1103 LLWEIFSLGASPYPGVQINEEFCQRLKDGTRMRAPELATPAIRHIMQSCWSGDPKARPAF 1162
Query: 1080 KQIVQLI 1100
+V+++
Sbjct: 1163 SDLVEIL 1169
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 43,994,610
Number of extensions: 1182454
Number of successful extensions: 4898
Number of sequences better than 1.0e-05: 401
Number of HSP's gapped: 4202
Number of HSP's successfully gapped: 492
Length of query: 431
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 327
Effective length of database: 12,493,815
Effective search space: 4085477505
Effective search space used: 4085477505
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012637
(1294 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001087241.1| mast/stem cell growth factor receptor isofor... 807 0.0
Alignment gi|NP_000213.1| mast/stem cell growth factor receptor isoform 1... 807 0.0
Alignment gi|NP_005202.2| macrophage colony-stimulating factor 1 receptor... 439 e-123
Alignment gi|NP_006197.1| alpha-type platelet-derived growth factor recep... 402 e-112
Alignment gi|NP_002600.1| beta-type platelet-derived growth factor recept... 380 e-105
Alignment gi|NP_004110.2| FL cytokine receptor precursor [Homo sapiens]. 377 e-104
Alignment gi|NP_002010.2| vascular endothelial growth factor receptor 1 i... 328 5e-90
Alignment gi|NP_002244.1| vascular endothelial growth factor receptor 2 p... 328 9e-90
Alignment gi|NP_891555.2| vascular endothelial growth factor receptor 3 i... 321 8e-88
Alignment gi|NP_002011.2| vascular endothelial growth factor receptor 3 i... 321 8e-88
>ref|NP_001087241.1| mast/stem cell growth factor receptor isoform 2 precursor [Homo
sapiens].
Length = 972
Score = 807 bits (2085), Expect = 0.0
Identities = 396/418 (94%), Positives = 401/418 (95%)
Frame = +3
Query: 3 VVEEINGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAM 182
VVEEINGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAM
Sbjct: 555 VVEEINGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAM 614
Query: 183 TVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDL 362
TVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDL
Sbjct: 615 TVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDL 674
Query: 363 LNFLRRKRDSFICSKQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADK 542
LNFLRRKRDSFICSKQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADK
Sbjct: 675 LNFLRRKRDSFICSKQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADK 734
Query: 543 RRSARIGSYIERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASKNCIHRDLAARNI 722
RRS RIGSYIERDVTPAIM SFSYQVAKGMAFLASKNCIHRDLAARNI
Sbjct: 735 RRSVRIGSYIERDVTPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNI 794
Query: 723 LLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIF 902
LLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIF
Sbjct: 795 LLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIF 854
Query: 903 LWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLKRPTFK 1082
LWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAP EMYDIMKTCWDADPLKRPTFK
Sbjct: 855 LWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFK 914
Query: 1083 QIVQLIEKQISESTNHIYSNLANCSPHRENPAVDHSVRINSVGSSASSTQPLLVHEDV 1256
QIVQLIEKQISESTNHIYSNLANCSP+R+ P VDHSVRINSVGS+ASS+QPLLVH+DV
Sbjct: 915 QIVQLIEKQISESTNHIYSNLANCSPNRQKPVVDHSVRINSVGSTASSSQPLLVHDDV 972
>ref|NP_000213.1| mast/stem cell growth factor receptor isoform 1 precursor [Homo
sapiens].
Length = 976
Score = 807 bits (2085), Expect = 0.0
Identities = 396/418 (94%), Positives = 401/418 (95%)
Frame = +3
Query: 3 VVEEINGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAM 182
VVEEINGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAM
Sbjct: 559 VVEEINGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAM 618
Query: 183 TVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDL 362
TVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDL
Sbjct: 619 TVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDL 678
Query: 363 LNFLRRKRDSFICSKQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADK 542
LNFLRRKRDSFICSKQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADK
Sbjct: 679 LNFLRRKRDSFICSKQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADK 738
Query: 543 RRSARIGSYIERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASKNCIHRDLAARNI 722
RRS RIGSYIERDVTPAIM SFSYQVAKGMAFLASKNCIHRDLAARNI
Sbjct: 739 RRSVRIGSYIERDVTPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNI 798
Query: 723 LLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIF 902
LLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIF
Sbjct: 799 LLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIF 858
Query: 903 LWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLKRPTFK 1082
LWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAP EMYDIMKTCWDADPLKRPTFK
Sbjct: 859 LWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFK 918
Query: 1083 QIVQLIEKQISESTNHIYSNLANCSPHRENPAVDHSVRINSVGSSASSTQPLLVHEDV 1256
QIVQLIEKQISESTNHIYSNLANCSP+R+ P VDHSVRINSVGS+ASS+QPLLVH+DV
Sbjct: 919 QIVQLIEKQISESTNHIYSNLANCSPNRQKPVVDHSVRINSVGSTASSSQPLLVHDDV 976
>ref|NP_005202.2| macrophage colony-stimulating factor 1 receptor precursor [Homo
sapiens].
Length = 972
Score = 439 bits (1129), Expect = e-123
Identities = 226/395 (57%), Positives = 279/395 (70%), Gaps = 10/395 (2%)
Frame = +3
Query: 3 VVEEINGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAM 182
++E GN+Y +IDPTQLPY+ KWEFPRN L FGKTLGAGAFGKVVEATA+GL K DA +
Sbjct: 552 IIESYEGNSYTFIDPTQLPYNEKWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVL 611
Query: 183 TVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDL 362
VAVKMLK +AH E+EALMSELK++S+LG H NIVNLLGACT GGP LVITEYCCYGDL
Sbjct: 612 KVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDL 671
Query: 363 LNFLRRKRDSFI---CSKQEDHAEAALYKNLLHSKESSCSDS------TNEYMDMKPGVS 515
LNFLRRK ++ + S +D YKN+ K+ DS + Y++M+P
Sbjct: 672 LNFLRRKAEAMLGPSLSPGQDPEGGVDYKNIHLEKKYVRRDSGFSSQGVDTYVEMRP--- 728
Query: 516 YVVPTKADKRRSARIGSYIERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASKNCI 695
V T ++ S+ E+D+ FS QVA+GMAFLASKNCI
Sbjct: 729 --VSTSSND-------SFSEQDLDKE----DGRPLELRDLLHFSSQVAQGMAFLASKNCI 775
Query: 696 HRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFE 875
HRD+AARN+LLT+G + KI DFGLARDI NDSNY+VKGNARLPVKWMAPESIF+CVYT +
Sbjct: 776 HRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQ 835
Query: 876 SDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDA 1055
SDVWSYGI LWE+FSLG +PYPG+ V+SKFYK++K+G++M P AP +Y IM+ CW
Sbjct: 836 SDVWSYGILLWEIFSLGLNPYPGILVNSKFYKLVKDGYQMAQPAFAPKNIYSIMQACWAL 895
Query: 1056 DPLKRPTFKQIVQLIEKQISES-TNHIYSNLANCS 1157
+P RPTF+QI +++Q E Y+NL + S
Sbjct: 896 EPTHRPTFQQICSFLQEQAQEDRRERDYTNLPSSS 930
>ref|NP_006197.1| alpha-type platelet-derived growth factor receptor precursor [Homo
sapiens].
Length = 1089
Score = 402 bits (1034), Expect = e-112
Identities = 212/417 (50%), Positives = 275/417 (65%), Gaps = 24/417 (5%)
Frame = +3
Query: 3 VVEEIN--GNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDA 176
V+E I+ G+ Y+Y+DP QLPYD +WEFPR+ L G+ LG+GAFGKVVE TAYGL +S
Sbjct: 561 VIESISPDGHEYIYVDPMQLPYDSRWEFPRDGLVLGRVLGSGAFGKVVEGTAYGLSRSQP 620
Query: 177 AMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYG 356
M VAVKMLKP+A +E++ALMSELK++++LG H+NIVNLLGACT GP +ITEYC YG
Sbjct: 621 VMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKSGPIYIITEYCFYG 680
Query: 357 DLLNFLRRKRDSFICSKQEDHAEAALYKNLLHSKESSCS------DSTNEYMDMKPG--V 512
DL+N+L + RDSF+ E + L + ES+ S ++ +YMDMK
Sbjct: 681 DLVNYLHKNRDSFLSHHPEKPKKELDIFGLNPADESTRSYVILSFENNGDYMDMKQADTT 740
Query: 513 SYV-------VPTKADKRRSA--RIGSY-----IERDVTPAIMXXXXXXXXXXXXXSFSY 650
YV V +D +RS R SY ++ +V + SF+Y
Sbjct: 741 QYVPMLERKEVSKYSDIQRSLYDRPASYKKKSMLDSEVKNLLSDDNSEGLTLLDLLSFTY 800
Query: 651 QVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVK 830
QVA+GM FLASKNC+HRDLAARN+LL G+I KICDFGLARDI +DSNYV KG+ LPVK
Sbjct: 801 QVARGMEFLASKNCVHRDLAARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGSTFLPVK 860
Query: 831 WMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEH 1010
WMAPESIF+ +YT SDVWSYGI LWE+FSLG +PYPGM VDS FY IK G+RM P+H
Sbjct: 861 WMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMMVDSTFYNKIKSGYRMAKPDH 920
Query: 1011 APVEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISESTNHIYSNLANCSPHRENPAV 1181
A E+Y+IM CW+++P KRP+F + +++E + Y + ++PAV
Sbjct: 921 ATSEVYEIMVKCWNSEPEKRPSFYHLSEIVENLLPGQYKKSYEKIHLDFLKSDHPAV 977
>ref|NP_002600.1| beta-type platelet-derived growth factor receptor precursor [Homo
sapiens].
Length = 1106
Score = 380 bits (975), Expect = e-105
Identities = 201/418 (48%), Positives = 267/418 (63%), Gaps = 25/418 (5%)
Frame = +3
Query: 3 VVEEIN--GNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDA 176
V+E ++ G+ Y+Y+DP QLPYD WE PR++L G+TLG+GAFG+VVEATA+GL S A
Sbjct: 568 VIESVSSDGHEYIYVDPMQLPYDSTWELPRDQLVLGRTLGSGAFGQVVEATAHGLSHSQA 627
Query: 177 AMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYG 356
M VAVKMLK +A +E++ALMSELK++S+LG H+N+VNLLGACT GGP +ITEYC YG
Sbjct: 628 TMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNVVNLLGACTKGGPIYIITEYCRYG 687
Query: 357 DLLNFLRRKRDSFIC--SKQEDHAEAALYKNLLH------SKESSCSDSTNEYMDMKP-- 506
DL+++L R + +F+ S + A LY N L S S +S YMDM
Sbjct: 688 DLVDYLHRNKHTFLQHHSDKRRPPSAELYSNALPVGLPLPSHVSLTGESDGGYMDMSKDE 747
Query: 507 GVSYV--VPTKADKRRS--------ARIGSYIE---RDVTPAIMXXXXXXXXXXXXXSFS 647
V YV + K D + + A +Y+ A + FS
Sbjct: 748 SVDYVPMLDMKGDVKYADIESSNYMAPYDNYVPSAPERTCRATLINESPVLSYMDLVGFS 807
Query: 648 YQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPV 827
YQVA GM FLASKNC+HRDLAARN+L+ G++ KICDFGLARDI DSNY+ KG+ LP+
Sbjct: 808 YQVANGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMRDSNYISKGSTFLPL 867
Query: 828 KWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPE 1007
KWMAPESIFN +YT SDVWS+GI LWE+F+LG +PYP +P++ +FY IK G+RM P
Sbjct: 868 KWMAPESIFNSLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNEQFYNAIKRGYRMAQPA 927
Query: 1008 HAPVEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISESTNHIYSNLANCSPHRENPAV 1181
HA E+Y+IM+ CW+ RP F Q+V L+E+ + E Y + ++PA+
Sbjct: 928 HASDEIYEIMQKCWEEKFEIRPPFSQLVLLLERLLGEGYKKKYQQVDEEFLRSDHPAI 985
>ref|NP_004110.2| FL cytokine receptor precursor [Homo sapiens].
Length = 993
Score = 377 bits (968), Expect = e-104
Identities = 192/383 (50%), Positives = 252/383 (65%), Gaps = 9/383 (2%)
Frame = +3
Query: 24 NNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKML 203
N Y Y+D + YD KWEFPR L FGK LG+GAFGKV+ ATAYG+ K+ ++ VAVKML
Sbjct: 587 NEYFYVDFREYEYDLKWEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKML 646
Query: 204 KPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRK 383
K A +EREALMSELK+++ LG+H NIVNLLGACT+ GP +I EYCCYGDLLN+LR K
Sbjct: 647 KEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSK 706
Query: 384 RDSFICSKQEDHAEA--ALYKNLLHSKESSCSDST-------NEYMDMKPGVSYVVPTKA 536
R+ F + E E + Y SS S ++ + G S+ +
Sbjct: 707 REKFHRTWTEIFKEHNFSFYPTFQSHPNSSMPGSREVQIHPDSDQISGLHGNSFHSEDEI 766
Query: 537 DKRRSARIGSYIERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASKNCIHRDLAAR 716
+ R+ + +V F+YQVAKGM FL K+C+HRDLAAR
Sbjct: 767 EYENQKRLEEEEDLNVLT-----------FEDLLCFAYQVAKGMEFLEFKSCVHRDLAAR 815
Query: 717 NILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYG 896
N+L+THG++ KICDFGLARDI +DSNYVV+GNARLPVKWMAPES+F +YT +SDVWSYG
Sbjct: 816 NVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYG 875
Query: 897 IFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLKRPT 1076
I LWE+FSLG +PYPG+PVD+ FYK+I+ GF+M P +A E+Y IM++CW D KRP+
Sbjct: 876 ILLWEIFSLGVNPYPGIPVDANFYKLIQNGFKMDQPFYATEEIYIIMQSCWAFDSRKRPS 935
Query: 1077 FKQIVQLIEKQISESTNHIYSNL 1145
F + + Q++++ +Y N+
Sbjct: 936 FPNLTSFLGCQLADAEEAMYQNV 958
>ref|NP_002010.2| vascular endothelial growth factor receptor 1 isoform 1 precursor
[Homo sapiens].
Length = 1338
Score = 328 bits (842), Expect = 5e-90
Identities = 174/361 (48%), Positives = 238/361 (65%), Gaps = 13/361 (3%)
Frame = +3
Query: 51 QLPYD-HKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTE 227
+LPYD KWEF R RL GK+LG GAFGKVV+A+A+G+ KS TVAVKMLK A +E
Sbjct: 812 RLPYDASKWEFARERLKLGKSLGRGAFGKVVQASAFGIKKSPTCRTVAVKMLKEGATASE 871
Query: 228 REALMSELKVLSYLGNHMNIVNLLGACTI-GGPTLVITEYCCYGDLLNFLRRKRDSFICS 404
+ALM+ELK+L+++G+H+N+VNLLGACT GGP +VI EYC YG+L N+L+ KRD F +
Sbjct: 872 YKALMTELKILTHIGHHLNVVNLLGACTKQGGPLMVIVEYCKYGNLSNYLKSKRDLFFLN 931
Query: 405 K--------QEDHAEAALY---KNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADKRRS 551
K +++ E L K L S SS S +++ + + K + +D
Sbjct: 932 KDAALHMEPKKEKMEPGLEQGKKPRLDSVTSSESFASSGFQEDK--------SLSDVEEE 983
Query: 552 ARIGSYIERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASKNCIHRDLAARNILLT 731
+ + +T + S+S+QVA+GM FL+S+ CIHRDLAARNILL+
Sbjct: 984 EDSDGFYKEPITMEDLI------------SYSFQVARGMEFLSSRKCIHRDLAARNILLS 1031
Query: 732 HGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWE 911
+ KICDFGLARDI + +YV KG+ RLP+KWMAPESIF+ +Y+ +SDVWSYG+ LWE
Sbjct: 1032 ENNVVKICDFGLARDIYKNPDYVRKGDTRLPLKWMAPESIFDKIYSTKSDVWSYGVLLWE 1091
Query: 912 LFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLKRPTFKQIV 1091
+FSLG SPYPG+ +D F ++EG RM +PE++ E+Y IM CW DP +RP F ++V
Sbjct: 1092 IFSLGGSPYPGVQMDEDFCSRLREGMRMRAPEYSTPEIYQIMLDCWHRDPKERPRFAELV 1151
Query: 1092 Q 1094
+
Sbjct: 1152 E 1152
>ref|NP_002244.1| vascular endothelial growth factor receptor 2 precursor [Homo
sapiens].
Length = 1356
Score = 328 bits (840), Expect = 9e-90
Identities = 175/360 (48%), Positives = 235/360 (65%), Gaps = 12/360 (3%)
Frame = +3
Query: 51 QLPYD-HKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTE 227
+LPYD KWEFPR+RL GK LG GAFG+V+EA A+G+ K+ TVAVKMLK A +E
Sbjct: 819 RLPYDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSE 878
Query: 228 REALMSELKVLSYLGNHMNIVNLLGACT-IGGPTLVITEYCCYGDLLNFLRRKRDSFICS 404
ALMSELK+L ++G+H+N+VNLLGACT GGP +VI E+C +G+L +LR KR+ F+
Sbjct: 879 HRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPY 938
Query: 405 KQ--------EDHAEA--ALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKADKRRSA 554
K +D+ A K L S SS S +++ +++ K
Sbjct: 939 KTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKS---------------- 982
Query: 555 RIGSYIERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASKNCIHRDLAARNILLTH 734
S +E + P + +S+QVAKGM FLAS+ CIHRDLAARNILL+
Sbjct: 983 --LSDVEEEEAPEDL--YKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSE 1038
Query: 735 GRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWEL 914
+ KICDFGLARDI D +YV KG+ARLP+KWMAPE+IF+ VYT +SDVWS+G+ LWE+
Sbjct: 1039 KNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEI 1098
Query: 915 FSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLKRPTFKQIVQ 1094
FSLG+SPYPG+ +D +F + +KEG RM +P++ EMY M CW +P +RPTF ++V+
Sbjct: 1099 FSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVE 1158
>ref|NP_891555.2| vascular endothelial growth factor receptor 3 isoform 1 precursor
[Homo sapiens].
Length = 1363
Score = 321 bits (823), Expect = 8e-88
Identities = 169/367 (46%), Positives = 236/367 (64%), Gaps = 11/367 (2%)
Frame = +3
Query: 33 VYIDPTQLPYDHK----------WEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAM 182
+ +DP ++P + + WEFPR RL G+ LG GAFGKVVEA+A+G+ K +
Sbjct: 815 IIMDPGEVPLEEQCEYLSYDASQWEFPRERLHLGRVLGYGAFGKVVEASAFGIHKGSSCD 874
Query: 183 TVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIG-GPTLVITEYCCYGD 359
TVAVKMLK A +E ALMSELK+L ++GNH+N+VNLLGACT GP +VI E+C YG+
Sbjct: 875 TVAVKMLKEGATASEHRALMSELKILIHIGNHLNVVNLLGACTKPQGPLMVIVEFCKYGN 934
Query: 360 LLNFLRRKRDSFICSKQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKAD 539
L NFLR KRD+F ++ + ++ ++ E + D + + T+
Sbjct: 935 LSNFLRAKRDAFSPCAEKSPEQRGRFRAMV---ELARLDRRRPGSSDRVLFARFSKTEGG 991
Query: 540 KRRSARIGSYIERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASKNCIHRDLAARN 719
RR++ + ++P M +S+QVA+GM FLAS+ CIHRDLAARN
Sbjct: 992 ARRASPDQEAEDLWLSPLTMEDLVC---------YSFQVARGMEFLASRKCIHRDLAARN 1042
Query: 720 ILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGI 899
ILL+ + KICDFGLARDI D +YV KG+ARLP+KWMAPESIF+ VYT +SDVWS+G+
Sbjct: 1043 ILLSESDVVKICDFGLARDIYKDPDYVRKGSARLPLKWMAPESIFDKVYTTQSDVWSFGV 1102
Query: 900 FLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLKRPTF 1079
LWE+FSLG+SPYPG+ ++ +F + +++G RM +PE A + IM CW DP RP F
Sbjct: 1103 LLWEIFSLGASPYPGVQINEEFCQRLRDGTRMRAPELATPAIRRIMLNCWSGDPKARPAF 1162
Query: 1080 KQIVQLI 1100
++V+++
Sbjct: 1163 SELVEIL 1169
>ref|NP_002011.2| vascular endothelial growth factor receptor 3 isoform 2 precursor
[Homo sapiens].
Length = 1298
Score = 321 bits (823), Expect = 8e-88
Identities = 169/367 (46%), Positives = 236/367 (64%), Gaps = 11/367 (2%)
Frame = +3
Query: 33 VYIDPTQLPYDHK----------WEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAM 182
+ +DP ++P + + WEFPR RL G+ LG GAFGKVVEA+A+G+ K +
Sbjct: 815 IIMDPGEVPLEEQCEYLSYDASQWEFPRERLHLGRVLGYGAFGKVVEASAFGIHKGSSCD 874
Query: 183 TVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIG-GPTLVITEYCCYGD 359
TVAVKMLK A +E ALMSELK+L ++GNH+N+VNLLGACT GP +VI E+C YG+
Sbjct: 875 TVAVKMLKEGATASEHRALMSELKILIHIGNHLNVVNLLGACTKPQGPLMVIVEFCKYGN 934
Query: 360 LLNFLRRKRDSFICSKQEDHAEAALYKNLLHSKESSCSDSTNEYMDMKPGVSYVVPTKAD 539
L NFLR KRD+F ++ + ++ ++ E + D + + T+
Sbjct: 935 LSNFLRAKRDAFSPCAEKSPEQRGRFRAMV---ELARLDRRRPGSSDRVLFARFSKTEGG 991
Query: 540 KRRSARIGSYIERDVTPAIMXXXXXXXXXXXXXSFSYQVAKGMAFLASKNCIHRDLAARN 719
RR++ + ++P M +S+QVA+GM FLAS+ CIHRDLAARN
Sbjct: 992 ARRASPDQEAEDLWLSPLTMEDLVC---------YSFQVARGMEFLASRKCIHRDLAARN 1042
Query: 720 ILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGI 899
ILL+ + KICDFGLARDI D +YV KG+ARLP+KWMAPESIF+ VYT +SDVWS+G+
Sbjct: 1043 ILLSESDVVKICDFGLARDIYKDPDYVRKGSARLPLKWMAPESIFDKVYTTQSDVWSFGV 1102
Query: 900 FLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPVEMYDIMKTCWDADPLKRPTF 1079
LWE+FSLG+SPYPG+ ++ +F + +++G RM +PE A + IM CW DP RP F
Sbjct: 1103 LLWEIFSLGASPYPGVQINEEFCQRLRDGTRMRAPELATPAIRRIMLNCWSGDPKARPAF 1162
Query: 1080 KQIVQLI 1100
++V+++
Sbjct: 1163 SELVEIL 1169
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 51,775,723
Number of extensions: 1404461
Number of successful extensions: 5830
Number of sequences better than 1.0e-05: 504
Number of HSP's gapped: 4965
Number of HSP's successfully gapped: 630
Length of query: 431
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 326
Effective length of database: 14,835,944
Effective search space: 4836517744
Effective search space used: 4836517744
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012637
(1294 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr08 303 1e-79
Sscrofa_Chr02 62 8e-07
>Sscrofa_Chr08
|| Length = 148491826
Score = 303 bits (153), Expect = 1e-79
Identities = 153/153 (100%)
Strand = Plus / Plus
Query: 317 agggcccaccctggtcattacagaatattgttgctatggtgatctcctgaattttttgag 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43590970 agggcccaccctggtcattacagaatattgttgctatggtgatctcctgaattttttgag 43591029
Query: 377 acggaaacgtgattcgtttatttgctcaaagcaggaagatcacgcagaagcggcgcttta 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43591030 acggaaacgtgattcgtttatttgctcaaagcaggaagatcacgcagaagcggcgcttta 43591089
Query: 437 taagaaccttctgcattcaaaggagtcttcctg 469
|||||||||||||||||||||||||||||||||
Sbjct: 43591090 taagaaccttctgcattcaaaggagtcttcctg 43591122
Score = 287 bits (145), Expect = 8e-75
Identities = 145/145 (100%)
Strand = Plus / Plus
Query: 1131 atttattccaacttagcgaactgcagcccccaccgggagaaccccgcggtggatcattct 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43600475 atttattccaacttagcgaactgcagcccccaccgggagaaccccgcggtggatcattct 43600534
Query: 1191 gtgcggatcaactccgtgggcagcagtgcctcctccacgcagccgctgcttgtccacgaa 1250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43600535 gtgcggatcaactccgtgggcagcagtgcctcctccacgcagccgctgcttgtccacgaa 43600594
Query: 1251 gacgtctgaagcagaatgggtgtcc 1275
|||||||||||||||||||||||||
Sbjct: 43600595 gacgtctgaagcagaatgggtgtcc 43600619
Score = 258 bits (130), Expect = 7e-66
Identities = 130/130 (100%)
Strand = Plus / Plus
Query: 560 aggctcatacatagaacgagatgtgactcctgccatcatggaagatgatgagttggccct 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43593739 aggctcatacatagaacgagatgtgactcctgccatcatggaagatgatgagttggccct 43593798
Query: 620 agacctggaggacttgctcagcttttcttaccaagtggcaaagggcatggccttcctcgc 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43593799 agacctggaggacttgctcagcttttcttaccaagtggcaaagggcatggccttcctcgc 43593858
Query: 680 ctcgaagaat 689
||||||||||
Sbjct: 43593859 ctcgaagaat 43593868
Score = 246 bits (124), Expect = 3e-62
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 690 tgtattcacagagacttggcggccagaaatatcctccttactcatggtcgaatcacaaag 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43594962 tgtattcacagagacttggcggccagaaatatcctccttactcatggtcgaatcacaaag 43595021
Query: 750 atttgtgattttggtctagccagagacatcaagaatgattctaattacgtggtcaaagga 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43595022 atttgtgattttggtctagccagagacatcaagaatgattctaattacgtggtcaaagga 43595081
Query: 810 aacg 813
||||
Sbjct: 43595082 aacg 43595085
Score = 224 bits (113), Expect = 9e-56
Identities = 113/113 (100%)
Strand = Plus / Plus
Query: 813 gctcggctacccgtgaagtggatggcacccgagagcattttcaactgtgtctacacattt 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43597516 gctcggctacccgtgaagtggatggcacccgagagcattttcaactgtgtctacacattt 43597575
Query: 873 gaaagcgatgtctggtcctatgggatttttctgtgggagctcttctctttagg 925
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43597576 gaaagcgatgtctggtcctatgggatttttctgtgggagctcttctctttagg 43597628
Score = 222 bits (112), Expect = 4e-55
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 208 caagtgcccatttaacggaacgagaagccctaatgtctgaactcaaagtcttaagttacc 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43589602 caagtgcccatttaacggaacgagaagccctaatgtctgaactcaaagtcttaagttacc 43589661
Query: 268 tcggtaatcacatgaatattgtgaatcttctcggcgcctgcaccattggagg 319
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43589662 tcggtaatcacatgaatattgtgaatcttctcggcgcctgcaccattggagg 43589713
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 102 ggcaaaaccttgggtgctggcgccttcgggaaagtcgttgaggccactgcatacggctta 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43589412 ggcaaaaccttgggtgctggcgccttcgggaaagtcgttgaggccactgcatacggctta 43589471
Query: 162 attaagtcagatgcggccatgaccgttgccgtgaagatgctcaaac 207
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43589472 attaagtcagatgcggccatgaccgttgccgtgaagatgctcaaac 43589517
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 1025 gtatgacatcatgaagacttgctgggatgcggatcccctcaaaagaccaacgtttaagca 1084
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43598477 gtatgacatcatgaagacttgctgggatgcggatcccctcaaaagaccaacgtttaagca 43598536
Query: 1085 gatcgtgcagctgattgagaagcagatttcggagagcaccaatcac 1130
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43598537 gatcgtgcagctgattgagaagcagatttcggagagcaccaatcac 43598582
Score = 200 bits (101), Expect = 1e-48
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 3 gttgtcgaggagataaatggaaacaattatgtctacatagacccaacgcaacttccttat 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43588747 gttgtcgaggagataaatggaaacaattatgtctacatagacccaacgcaacttccttat 43588806
Query: 63 gatcacaaatgggaatttcccaggaacaggctgagttttgg 103
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 43588807 gatcacaaatgggaatttcccaggaacaggctgagttttgg 43588847
Score = 190 bits (96), Expect = 1e-45
Identities = 103/104 (99%), Gaps = 1/104 (0%)
Strand = Plus / Plus
Query: 924 gggagcagcccctaccccggaatgccagttgattctaaattctacaagatgatcaaggag 983
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 43597740 gggagcagcccctaccccggaatgccagt-gattctaaattctacaagatgatcaaggag 43597798
Query: 984 ggtttccgaatgctcagccctgagcatgcacctgtggaaatgta 1027
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43597799 ggtttccgaatgctcagccctgagcatgcacctgtggaaatgta 43597842
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 469 gcagtgacagtactaacgagtacatggacatgaaacccggagtgtcttatgtggtaccaa 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43593159 gcagtgacagtactaacgagtacatggacatgaaacccggagtgtcttatgtggtaccaa 43593218
Query: 529 ccaaggcagacaaaaggagatctgcgagaatagg 562
||||||||||||||||||||||||||||||||||
Sbjct: 43593219 ccaaggcagacaaaaggagatctgcgagaatagg 43593252
>Sscrofa_Chr02
|| Length = 162569375
Score = 61.9 bits (31), Expect = 8e-07
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 822 cccgtgaagtggatggcacccgagagcattttcaactgtgtctacac 868
||||||||||||||||| ||||||||||| ||| |||| ||||||||
Sbjct: 157858355 cccgtgaagtggatggcccccgagagcatcttcgactgcgtctacac 157858309
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,496,293
Number of extensions: 188
Number of successful extensions: 188
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 12
Length of query: 1294
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1273
Effective length of database: 2,808,413,156
Effective search space: 3575109947588
Effective search space used: 3575109947588
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)