Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012642
(1115 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540542.2| PREDICTED: similar to DIPB protein [Canis famil... 162 4e-40
Alignment gi|XP_538133.2| PREDICTED: similar to Midline 2 protein (Midlin... 50 3e-06
Alignment gi|XP_539335.2| PREDICTED: similar to tripartite motif-containi... 50 5e-06
>ref|XP_540542.2| PREDICTED: similar to DIPB protein [Canis familiaris].
Length = 483
Score = 162 bits (411), Expect = 4e-40
Identities = 79/85 (92%), Positives = 82/85 (96%)
Frame = +3
Query: 861 TEAESEFDPEIEMEAERVAKRKCLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLD 1040
TEAESEFDPEIEMEAERVAKRKC DHGLDLSTYCQED+QLICVLCPVIG HQGHQLSTLD
Sbjct: 296 TEAESEFDPEIEMEAERVAKRKCPDHGLDLSTYCQEDRQLICVLCPVIGTHQGHQLSTLD 355
Query: 1041 EALQKLRSKDSGGLKAAMIELVERL 1115
EA ++LRSKDSGGLKAAMIELVERL
Sbjct: 356 EAFEELRSKDSGGLKAAMIELVERL 380
Score = 133 bits (335), Expect = 3e-31
Identities = 64/97 (65%), Positives = 68/97 (70%), Gaps = 2/97 (2%)
Frame = +3
Query: 294 GRLPGGEEDARRPRRGQAAS-SVGLSPG-PLHGPHMASGGGAAFEELPHDGTCDECEPDE 467
G PG +AR G+ S G PG P HMASG GAAFEELPHDGTCDECEPDE
Sbjct: 108 GARPGTRREARTHSGGRGGGRSGGPRPGGPRQRSHMASGVGAAFEELPHDGTCDECEPDE 167
Query: 468 APGAEEVCRECGFCYCHRHAEVHGQKFPRHHLAEYVH 578
APGAE+VCREC FCYC RHAE H +FP HHLA YVH
Sbjct: 168 APGAEQVCRECAFCYCPRHAEAHRHRFPGHHLARYVH 204
>ref|XP_538133.2| PREDICTED: similar to Midline 2 protein (Midline defect 2)
(Tripartite motif protein 1) [Canis familiaris].
Length = 685
Score = 50.4 bits (119), Expect = 3e-06
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Frame = +3
Query: 927 CLDHGLD-LSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEALQKLRSKDSGGLKAAMIEL 1103
CLDH + ++ YC D QLIC LC ++G H+ HQ+++L++ +KL+ L+ + L
Sbjct: 175 CLDHENEKVNMYCVSDDQLICALCKLVGRHRDHQVASLNDRFEKLKQT----LEMNLTNL 230
Query: 1104 VER 1112
V+R
Sbjct: 231 VKR 233
>ref|XP_539335.2| PREDICTED: similar to tripartite motif-containing 58 [Canis
familiaris].
Length = 517
Score = 49.7 bits (117), Expect = 5e-06
Identities = 22/76 (28%), Positives = 42/76 (55%)
Frame = +3
Query: 888 EIEMEAERVAKRKCLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEALQKLRSK 1067
++ + A + R+C HG DLS +C+ED+ ++C +C H+ H + L +A ++ ++K
Sbjct: 114 QLGLGAGPLGARQCARHGEDLSLFCEEDQDVLCWVCDTTPEHRSHHTAPLQDAARRYQTK 173
Query: 1068 DSGGLKAAMIELVERL 1115
L+ E+ E L
Sbjct: 174 LQMALELIRKEMEETL 189
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,678,937
Number of extensions: 942841
Number of successful extensions: 5328
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5302
Number of HSP's successfully gapped: 4
Length of query: 371
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 267
Effective length of database: 15,407,560
Effective search space: 4113818520
Effective search space used: 4113818520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012642
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012642
(1115 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001098484.1| tripartite motif-containing protein 44 [Bos ... 161 8e-40
>ref|NP_001098484.1| tripartite motif-containing protein 44 [Bos taurus].
Length = 338
Score = 161 bits (408), Expect = 8e-40
Identities = 79/85 (92%), Positives = 81/85 (95%)
Frame = +3
Query: 861 TEAESEFDPEIEMEAERVAKRKCLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLD 1040
TEAESEFDPEIEMEAERVAKRKC DHGLDLSTYCQEDKQLICVLCPVIGAH GH LSTLD
Sbjct: 154 TEAESEFDPEIEMEAERVAKRKCPDHGLDLSTYCQEDKQLICVLCPVIGAHHGHHLSTLD 213
Query: 1041 EALQKLRSKDSGGLKAAMIELVERL 1115
EA ++LRSKDSGGLKAAMIELVERL
Sbjct: 214 EAFEELRSKDSGGLKAAMIELVERL 238
Score = 148 bits (374), Expect = 7e-36
Identities = 64/71 (90%), Positives = 64/71 (90%)
Frame = +3
Query: 393 MASGGGAAFEELPHDGTCDECEPDEAPGAEEVCRECGFCYCHRHAEVHGQKFPRHHLAEY 572
MASGGGAAFEELPHDGTCDECEPDEAPGAEEVCRECGFCYC HAE HGQKFPRHHLAEY
Sbjct: 1 MASGGGAAFEELPHDGTCDECEPDEAPGAEEVCRECGFCYCRHHAEAHGQKFPRHHLAEY 60
Query: 573 VHGAHQAWASG 605
VH A QAW G
Sbjct: 61 VHCAAQAWTPG 71
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,361,442
Number of extensions: 1125346
Number of successful extensions: 5024
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4999
Number of HSP's successfully gapped: 2
Length of query: 371
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 267
Effective length of database: 14,240,222
Effective search space: 3802139274
Effective search space used: 3802139274
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012642
(1115 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122913.1| PREDICTED: tripartite motif-containing prote... 168 4e-42
Alignment gi|XP_003360458.1| PREDICTED: probable E3 ubiquitin-protein lig... 50 2e-06
Alignment gi|NP_001116680.1| tripartite motif-containing protein 15 [Sus ... 49 7e-06
Alignment gi|XP_003134970.1| PREDICTED: midline-1 [Sus scrofa]. 48 9e-06
Alignment gi|XP_001929283.1| PREDICTED: tripartite motif-containing prote... 48 9e-06
>ref|XP_003122913.1| PREDICTED: tripartite motif-containing protein 44-like [Sus
scrofa].
Length = 345
Score = 168 bits (426), Expect = 4e-42
Identities = 72/72 (100%), Positives = 72/72 (100%)
Frame = +3
Query: 393 MASGGGAAFEELPHDGTCDECEPDEAPGAEEVCRECGFCYCHRHAEVHGQKFPRHHLAEY 572
MASGGGAAFEELPHDGTCDECEPDEAPGAEEVCRECGFCYCHRHAEVHGQKFPRHHLAEY
Sbjct: 1 MASGGGAAFEELPHDGTCDECEPDEAPGAEEVCRECGFCYCHRHAEVHGQKFPRHHLAEY 60
Query: 573 VHGAHQAWASGP 608
VHGAHQAWASGP
Sbjct: 61 VHGAHQAWASGP 72
Score = 168 bits (425), Expect = 6e-42
Identities = 82/85 (96%), Positives = 84/85 (98%)
Frame = +3
Query: 861 TEAESEFDPEIEMEAERVAKRKCLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLD 1040
TEAESEFDPEIEMEAERVAKRKCLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLD
Sbjct: 157 TEAESEFDPEIEMEAERVAKRKCLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLD 216
Query: 1041 EALQKLRSKDSGGLKAAMIELVERL 1115
EA ++LRSKDSGGLKAAMIELVERL
Sbjct: 217 EAFEELRSKDSGGLKAAMIELVERL 241
>ref|XP_003360458.1| PREDICTED: probable E3 ubiquitin-protein ligase MID2 [Sus scrofa].
Length = 685
Score = 50.4 bits (119), Expect = 2e-06
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Frame = +3
Query: 927 CLDHGLD-LSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEALQKLRSKDSGGLKAAMIEL 1103
CLDH + ++ YC D QLIC LC ++G H+ HQ+++L++ +KL+ L+ + L
Sbjct: 175 CLDHENEKVNMYCVSDDQLICALCKLVGRHRDHQVASLNDRFEKLKQT----LEMNLTNL 230
Query: 1104 VER 1112
V+R
Sbjct: 231 VKR 233
>ref|NP_001116680.1| tripartite motif-containing protein 15 [Sus scrofa].
Length = 461
Score = 48.5 bits (114), Expect = 7e-06
Identities = 21/58 (36%), Positives = 33/58 (56%)
Frame = +3
Query: 927 CLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEALQKLRSKDSGGLKAAMIE 1100
C +HG + +C+ D + +CV C +HQ H + LDEA+Q R + G L+A + E
Sbjct: 79 CEEHGEKIYFFCENDAEFLCVFCREGPSHQAHAVGFLDEAIQPYRDRLRGRLEALITE 136
>ref|XP_003134970.1| PREDICTED: midline-1 [Sus scrofa].
Length = 667
Score = 48.1 bits (113), Expect = 9e-06
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Frame = +3
Query: 927 CLDHGLD-LSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEALQKLRSKDSGGLKAAMIEL 1103
CL+H + ++ YC D QLIC LC ++G H+ HQ++ L E KL+ L++ + L
Sbjct: 175 CLEHEDEKVNMYCVTDDQLICALCKLVGRHRDHQVAALSERYDKLKQ----NLESNLTNL 230
Query: 1104 VER 1112
++R
Sbjct: 231 IKR 233
>ref|XP_001929283.1| PREDICTED: tripartite motif-containing protein 26-like [Sus scrofa].
Length = 543
Score = 48.1 bits (113), Expect = 9e-06
Identities = 25/74 (33%), Positives = 39/74 (52%)
Frame = +3
Query: 864 EAESEFDPEIEMEAERVAKRKCLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDE 1043
+A+ E P E + E+ A+ C H L YC++D+Q++CV+C H+ H L++
Sbjct: 82 KADEERQPREERQREQRAEELCGQHLEKLHYYCKDDQQILCVMCRESREHRHHAAVLLEK 141
Query: 1044 ALQKLRSKDSGGLK 1085
A Q R K LK
Sbjct: 142 AAQPHRGKILNHLK 155
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,276,308
Number of extensions: 1061130
Number of successful extensions: 3269
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3250
Number of HSP's successfully gapped: 6
Length of query: 371
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 271
Effective length of database: 8,854,232
Effective search space: 2399496872
Effective search space used: 2399496872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012642
(1115 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_064663.2| tripartite motif-containing protein 44 [Mus mus... 162 3e-40
Alignment gi|NP_035975.1| probable E3 ubiquitin-protein ligase MID2 [Mus ... 50 2e-06
Alignment gi|NP_001034136.1| tripartite motif-containing protein 58 [Mus ... 49 5e-06
>ref|NP_064663.2| tripartite motif-containing protein 44 [Mus musculus].
Length = 345
Score = 162 bits (411), Expect = 3e-40
Identities = 79/85 (92%), Positives = 83/85 (97%)
Frame = +3
Query: 861 TEAESEFDPEIEMEAERVAKRKCLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLD 1040
TEAESEFDPEIEMEAERVAKRKC DHGLDLSTYCQED+QLICVLCPVIGAH+GHQLSTLD
Sbjct: 158 TEAESEFDPEIEMEAERVAKRKCPDHGLDLSTYCQEDRQLICVLCPVIGAHRGHQLSTLD 217
Query: 1041 EALQKLRSKDSGGLKAAMIELVERL 1115
EA ++LRSKDSGGLKAAMIELVERL
Sbjct: 218 EAFEELRSKDSGGLKAAMIELVERL 242
Score = 120 bits (302), Expect = 1e-27
Identities = 55/68 (80%), Positives = 57/68 (83%)
Frame = +3
Query: 393 MASGGGAAFEELPHDGTCDECEPDEAPGAEEVCRECGFCYCHRHAEVHGQKFPRHHLAEY 572
MASG GAA EELP DGTCDECEPDEAPGAEEVCR+CGFCYC RHA+ H QKF H LA Y
Sbjct: 1 MASGVGAACEELPPDGTCDECEPDEAPGAEEVCRDCGFCYCRRHADAHRQKFLSHRLAAY 60
Query: 573 VHGAHQAW 596
VHGA QAW
Sbjct: 61 VHGA-QAW 67
>ref|NP_035975.1| probable E3 ubiquitin-protein ligase MID2 [Mus musculus].
Length = 685
Score = 50.4 bits (119), Expect = 2e-06
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Frame = +3
Query: 927 CLDHGLD-LSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEALQKLRSKDSGGLKAAMIEL 1103
CLDH + ++ YC D QLIC LC ++G H+ HQ+++L++ +KL+ L+ + L
Sbjct: 175 CLDHENEKVNMYCVSDDQLICALCKLVGRHRDHQVASLNDRFEKLKQT----LEMNLTNL 230
Query: 1104 VER 1112
V+R
Sbjct: 231 VKR 233
>ref|NP_001034136.1| tripartite motif-containing protein 58 [Mus musculus].
Length = 485
Score = 49.3 bits (116), Expect = 5e-06
Identities = 22/65 (33%), Positives = 35/65 (53%)
Frame = +3
Query: 921 RKCLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEALQKLRSKDSGGLKAAMIE 1100
R+C HG DLS +C+ED+ ++C +C H+ H+ TL EA + + L+ E
Sbjct: 93 RQCARHGEDLSHFCEEDQTMLCWVCDTSPEHRSHRTETLQEAASRYQRMLRASLELVKKE 152
Query: 1101 LVERL 1115
+ E L
Sbjct: 153 MEEAL 157
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,212,848
Number of extensions: 730016
Number of successful extensions: 3731
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3696
Number of HSP's successfully gapped: 4
Length of query: 371
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 268
Effective length of database: 12,523,851
Effective search space: 3356392068
Effective search space used: 3356392068
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012642
(1115 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060053.2| tripartite motif-containing protein 44 [Homo sa... 164 1e-40
Alignment gi|NP_438112.2| probable E3 ubiquitin-protein ligase MID2 isofo... 50 3e-06
Alignment gi|NP_036348.2| probable E3 ubiquitin-protein ligase MID2 isofo... 50 3e-06
>ref|NP_060053.2| tripartite motif-containing protein 44 [Homo sapiens].
Length = 344
Score = 164 bits (415), Expect = 1e-40
Identities = 80/85 (94%), Positives = 83/85 (97%)
Frame = +3
Query: 861 TEAESEFDPEIEMEAERVAKRKCLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLD 1040
TEAESEFDPEIEMEAERVAKRKC DHGLDLSTYCQED+QLICVLCPVIGAHQGHQLSTLD
Sbjct: 157 TEAESEFDPEIEMEAERVAKRKCPDHGLDLSTYCQEDRQLICVLCPVIGAHQGHQLSTLD 216
Query: 1041 EALQKLRSKDSGGLKAAMIELVERL 1115
EA ++LRSKDSGGLKAAMIELVERL
Sbjct: 217 EAFEELRSKDSGGLKAAMIELVERL 241
Score = 134 bits (337), Expect = 2e-31
Identities = 60/68 (88%), Positives = 61/68 (89%)
Frame = +3
Query: 393 MASGGGAAFEELPHDGTCDECEPDEAPGAEEVCRECGFCYCHRHAEVHGQKFPRHHLAEY 572
MASG GAAFEELPHDGTCDECEPDEAPGAEEVCRECGFCYC RHAE H QKF HHLAEY
Sbjct: 1 MASGVGAAFEELPHDGTCDECEPDEAPGAEEVCRECGFCYCRRHAEAHRQKFLSHHLAEY 60
Query: 573 VHGAHQAW 596
VHG+ QAW
Sbjct: 61 VHGS-QAW 67
>ref|NP_438112.2| probable E3 ubiquitin-protein ligase MID2 isoform 2 [Homo sapiens].
Length = 705
Score = 50.4 bits (119), Expect = 3e-06
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Frame = +3
Query: 927 CLDHGLD-LSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEALQKLRSKDSGGLKAAMIEL 1103
CLDH + ++ YC D QLIC LC ++G H+ HQ+++L++ +KL+ L+ + L
Sbjct: 195 CLDHENEKVNMYCVSDDQLICALCKLVGRHRDHQVASLNDRFEKLKQT----LEMNLTNL 250
Query: 1104 VER 1112
V+R
Sbjct: 251 VKR 253
>ref|NP_036348.2| probable E3 ubiquitin-protein ligase MID2 isoform 1 [Homo sapiens].
Length = 735
Score = 50.4 bits (119), Expect = 3e-06
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Frame = +3
Query: 927 CLDHGLD-LSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEALQKLRSKDSGGLKAAMIEL 1103
CLDH + ++ YC D QLIC LC ++G H+ HQ+++L++ +KL+ L+ + L
Sbjct: 195 CLDHENEKVNMYCVSDDQLICALCKLVGRHRDHQVASLNDRFEKLKQT----LEMNLTNL 250
Query: 1104 VER 1112
V+R
Sbjct: 251 VKR 253
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 33,681,323
Number of extensions: 886944
Number of successful extensions: 4718
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4697
Number of HSP's successfully gapped: 4
Length of query: 371
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 267
Effective length of database: 14,868,908
Effective search space: 3969998436
Effective search space used: 3969998436
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012642
(1115 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 1041 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 1041 bits (525), Expect = 0.0
Identities = 525/525 (100%)
Strand = Plus / Minus
Query: 152 aagtgccccggcagctgcaggaagctcagagggtgcctagccgtggagccggcgaggagg 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27737786 aagtgccccggcagctgcaggaagctcagagggtgcctagccgtggagccggcgaggagg 27737727
Query: 212 cggggtgtgtgctcctgggcctggcgggggctgtaggagtaggtggcagcggggctgtgg 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27737726 cggggtgtgtgctcctgggcctggcgggggctgtaggagtaggtggcagcggggctgtgg 27737667
Query: 272 aacgcggtgcggcagctgcccgggacggctcccgggtggggaggaagacgcaaggaggcc 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27737666 aacgcggtgcggcagctgcccgggacggctcccgggtggggaggaagacgcaaggaggcc 27737607
Query: 332 gcgccgaggccaggcggccagctcggtgggcttgagccccgggccgctgcacggccccca 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27737606 gcgccgaggccaggcggccagctcggtgggcttgagccccgggccgctgcacggccccca 27737547
Query: 392 catggcctccggagggggcgcggccttcgaggagctgccgcacgatggcacgtgtgatga 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27737546 catggcctccggagggggcgcggccttcgaggagctgccgcacgatggcacgtgtgatga 27737487
Query: 452 gtgcgagcccgacgaggctccgggggccgaggaagtgtgccgagaatgtggcttctgcta 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27737486 gtgcgagcccgacgaggctccgggggccgaggaagtgtgccgagaatgtggcttctgcta 27737427
Query: 512 ctgccaccgtcacgcggaggtgcacgggcagaagttcccccggcaccacctggccgagta 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27737426 ctgccaccgtcacgcggaggtgcacgggcagaagttcccccggcaccacctggccgagta 27737367
Query: 572 cgtccacggtgctcaccaggcctgggcctcgggacctcaagggggcggcacaggggagga 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27737366 cgtccacggtgctcaccaggcctgggcctcgggacctcaagggggcggcacaggggagga 27737307
Query: 632 agaagtcgaggcccaggtggagaaggagaaggccctagaaagtga 676
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27737306 agaagtcgaggcccaggtggagaaggagaaggccctagaaagtga 27737262
Score = 371 bits (187), Expect = e-100
Identities = 187/187 (100%)
Strand = Plus / Minus
Query: 860 aactgaggcagaaagcgaatttgatccggaaatagaaatggaagcagagcgagtggccaa 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27737078 aactgaggcagaaagcgaatttgatccggaaatagaaatggaagcagagcgagtggccaa 27737019
Query: 920 gaggaagtgtctggaccatgggctcgatttgagtacctattgccaggaagataagcagct 979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27737018 gaggaagtgtctggaccatgggctcgatttgagtacctattgccaggaagataagcagct 27736959
Query: 980 catctgtgtcctgtgcccagtcattggggctcaccagggtcatcagctttccaccctaga 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27736958 catctgtgtcctgtgcccagtcattggggctcaccagggtcatcagctttccaccctaga 27736899
Query: 1040 tgaagcc 1046
|||||||
Sbjct: 27736898 tgaagcc 27736892
Score = 200 bits (101), Expect = 1e-48
Identities = 101/101 (100%)
Strand = Plus / Minus
Query: 1 ggaagtaaaagggggcctcctgacgctgagagggaaagtggaaccggggcggcgcgaggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27737937 ggaagtaaaagggggcctcctgacgctgagagggaaagtggaaccggggcggcgcgaggg 27737878
Query: 61 cccatcgagccgtgttctcgccagggcagcggggagggcga 101
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 27737877 cccatcgagccgtgttctcgccagggcagcggggagggcga 27737837
Score = 107 bits (54), Expect = 1e-20
Identities = 54/54 (100%)
Strand = Plus / Minus
Query: 1062 agcaaagactcaggcggattgaaggcagccatgatagagttggtggaaaggtta 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27715106 agcaaagactcaggcggattgaaggcagccatgatagagttggtggaaaggtta 27715053
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 20,439,169
Number of extensions: 124
Number of successful extensions: 124
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 4
Length of query: 1115
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1094
Effective length of database: 2,808,413,156
Effective search space: 3072403992664
Effective search space used: 3072403992664
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)