Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012643
(1373 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540542.2| PREDICTED: similar to DIPB protein [Canis famil... 294 6e-81
Alignment gi|XP_548791.2| PREDICTED: similar to Tripartite motif protein ... 59 8e-09
Alignment gi|XP_539335.2| PREDICTED: similar to tripartite motif-containi... 58 2e-08
Alignment gi|XP_848259.1| PREDICTED: similar to tripartite motif-containi... 57 3e-08
Alignment gi|XP_539324.2| PREDICTED: similar to tripartite motif-containi... 55 1e-07
Alignment gi|NP_001192120.1| tripartite motif-containing protein 34 [Cani... 55 2e-07
Alignment gi|XP_853298.1| PREDICTED: similar to tripartite motif-containi... 55 2e-07
Alignment gi|NP_001192119.1| tripartite motif-containing protein 6 [Canis... 54 4e-07
Alignment gi|XP_538133.2| PREDICTED: similar to Midline 2 protein (Midlin... 54 4e-07
Alignment gi|XP_542344.2| PREDICTED: similar to 52 kDa Ro protein (Sjogre... 54 4e-07
>ref|XP_540542.2| PREDICTED: similar to DIPB protein [Canis familiaris].
Length = 483
Score = 294 bits (753), Expect(2) = 6e-81
Identities = 148/155 (95%), Positives = 151/155 (97%)
Frame = +2
Query: 818 FDPEIEMEAERVAKRKCLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEEL 997
FDPEIEMEAERVAKRKC DHGLDLSTYCQED+QLICVLCPVIG HQGHQLSTLDEAFEEL
Sbjct: 302 FDPEIEMEAERVAKRKCPDHGLDLSTYCQEDRQLICVLCPVIGTHQGHQLSTLDEAFEEL 361
Query: 998 RSKDSGGLKAAMIELVERLKFKSSDPKVTRDQMKVFIQQEFKKVQKVIADEEQKTLHLVD 1177
RSKDSGGLKAAMIELVERLKFKSSDPKVTRDQMKVFIQQEFKKVQKVIADEEQK LHLVD
Sbjct: 362 RSKDSGGLKAAMIELVERLKFKSSDPKVTRDQMKVFIQQEFKKVQKVIADEEQKALHLVD 421
Query: 1178 IQEAMATAHVTEILADIQSHMDRLMTQMAQARKHL 1282
IQEAMATAHVTEILADIQSHMDRLMTQMAQA++ L
Sbjct: 422 IQEAMATAHVTEILADIQSHMDRLMTQMAQAKEQL 456
Score = 26.6 bits (57), Expect(2) = 6e-81
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +3
Query: 1308 KAEGDEEGPSVQ*REEE 1358
KAEGDEEGPS EE+
Sbjct: 466 KAEGDEEGPSGASEEED 482
Score = 133 bits (334), Expect = 5e-31
Identities = 63/97 (64%), Positives = 68/97 (70%), Gaps = 2/97 (2%)
Frame = +2
Query: 233 GRLPGGEEDARRPRRGQAAS-SVGLSPG-PLHGPHMASGGGAAFEELPHDGTCDECEPDE 406
G PG +AR G+ S G PG P HMASG GAAFEELPHDGTCDECEPDE
Sbjct: 108 GARPGTRREARTHSGGRGGGRSGGPRPGGPRQRSHMASGVGAAFEELPHDGTCDECEPDE 167
Query: 407 APGAEEVCRECGFCYCHRHAEVHGQKFPRHHLAEYIH 517
APGAE+VCREC FCYC RHAE H +FP HHLA Y+H
Sbjct: 168 APGAEQVCRECAFCYCPRHAEAHRHRFPGHHLARYVH 204
>ref|XP_548791.2| PREDICTED: similar to Tripartite motif protein 7
(Glycogenin-interacting protein) (RING finger protein 90)
[Canis familiaris].
Length = 1147
Score = 59.3 bits (142), Expect = 8e-09
Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 6/143 (4%)
Frame = +2
Query: 866 CLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEELRSKDSGGLKAAMIELV 1045
C HG L YCQ+D + ICV+C H+ H + LDEA +E + LK +L
Sbjct: 766 CALHGEPLKLYCQDDGRAICVVCDRAREHRAHAVLPLDEAVQEAKELLESRLKVLKKDLE 825
Query: 1046 ERLKFKSSDPKVTRDQMKVFIQQ------EFKKVQKVIADEEQKTLHLVDIQEAMATAHV 1207
+ F+S++ K +++ +K + EF+ ++ + ++E + L ++ T
Sbjct: 826 DYEAFRSTEEKESKELLKQMAAEREKAGAEFQALRAFLVEQEGRLLGRLEELSREVTQKR 885
Query: 1208 TEILADIQSHMDRLMTQMAQARK 1276
E +A ++ + +L +Q ++
Sbjct: 886 NENIAQLEGEITQLSKLSSQIQE 908
>ref|XP_539335.2| PREDICTED: similar to tripartite motif-containing 58 [Canis
familiaris].
Length = 517
Score = 58.2 bits (139), Expect = 2e-08
Identities = 44/167 (26%), Positives = 86/167 (51%), Gaps = 6/167 (3%)
Frame = +2
Query: 827 EIEMEAERVAKRKCLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEELRSK 1006
++ + A + R+C HG DLS +C+ED+ ++C +C H+ H + L +A ++K
Sbjct: 114 QLGLGAGPLGARQCARHGEDLSLFCEEDQDVLCWVCDTTPEHRSHHTAPLQDAARRYQTK 173
Query: 1007 DSGGLKAAMIELVERLKFKSSDPKVT---RDQMKVFIQQ---EFKKVQKVIADEEQKTLH 1168
L+ E+ E L +++ K T ++++++ Q+ EF+K + +A EEQ L
Sbjct: 174 LQMALELIRKEMEETLTQEANMGKKTVVWKEKVEIQRQRFRLEFEKYRGFLALEEQLQLR 233
Query: 1169 LVDIQEAMATAHVTEILADIQSHMDRLMTQMAQARKHLIPSMNQLSQ 1309
++ +E AT L ++ + +RL+ Q +A K L + + Q
Sbjct: 234 RLE-EEERAT------LQRLRENKNRLV-QQGRALKELAQELEERCQ 272
>ref|XP_848259.1| PREDICTED: similar to tripartite motif-containing 11 isoform 2 [Canis
familiaris].
Length = 468
Score = 57.4 bits (137), Expect = 3e-08
Identities = 41/171 (23%), Positives = 80/171 (46%), Gaps = 14/171 (8%)
Frame = +2
Query: 866 CLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEELRSKDSGGLKAAMIELV 1045
C H L+ +C ++ +L+C C G H H++ L +A E+L+ K L+ ++
Sbjct: 92 CAAHREPLAAFCGDELRLLCAACERSGEHWTHRVRPLQDAAEDLKGKLEKSLEHLRKQME 151
Query: 1046 ERLKFKSSDPKVTRDQMKVFIQQ------EFKKVQKVIADEEQKTLHLVDIQEAMATAHV 1207
+ L F++ + K+ Q EF+++++++A+EEQ+ L ++ +E
Sbjct: 152 DALLFQAQAEETCALWQKMVESQRQNVLAEFERLRRLLAEEEQRLLQRLEEEE------- 204
Query: 1208 TEILADIQSHMDRLMTQMAQARKHL--------IPSMNQLSQGRGRRRRTQ 1336
E+L ++ RL Q AQ + + +P++ L R RR Q
Sbjct: 205 LEVLPPLRDSATRLGQQSAQLAELIAELEGRCQLPALGLLQDIRDTLRRVQ 255
>ref|XP_539324.2| PREDICTED: similar to tripartite motif-containing 11 isoform 1 [Canis
familiaris].
Length = 486
Score = 55.5 bits (132), Expect = 1e-07
Identities = 35/140 (25%), Positives = 69/140 (49%), Gaps = 6/140 (4%)
Frame = +2
Query: 866 CLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEELRSKDSGGLKAAMIELV 1045
C H L+ +C ++ +L+C C G H H++ L +A E+L+ K L+ ++
Sbjct: 92 CAAHREPLAAFCGDELRLLCAACERSGEHWTHRVRPLQDAAEDLKGKLEKSLEHLRKQME 151
Query: 1046 ERLKFKSSDPKVTRDQMKVFIQQ------EFKKVQKVIADEEQKTLHLVDIQEAMATAHV 1207
+ L F++ + K+ Q EF+++++++A+EEQ+ L ++ +E
Sbjct: 152 DALLFQAQAEETCALWQKMVESQRQNVLAEFERLRRLLAEEEQRLLQRLEEEE------- 204
Query: 1208 TEILADIQSHMDRLMTQMAQ 1267
E+L ++ RL Q AQ
Sbjct: 205 LEVLPPLRDSATRLGQQSAQ 224
>ref|NP_001192120.1| tripartite motif-containing protein 34 [Canis lupus familiaris].
Length = 487
Score = 55.1 bits (131), Expect = 2e-07
Identities = 38/157 (24%), Positives = 78/157 (49%), Gaps = 8/157 (5%)
Frame = +2
Query: 833 EMEAERVAKRK-CLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEELRSKD 1009
++ E + KR C+ HG L +C+ED+++IC LC H+GHQ ++E +E +
Sbjct: 84 KLNPEELLKRDLCVRHGKKLLLFCKEDRKVICWLCERSQEHRGHQTFLVEEVVKEYQENL 143
Query: 1010 SGGLKAAMIELVERLKFKSSDPKVTRDQMKVFIQ-------QEFKKVQKVIADEEQKTLH 1168
++ E + K + +D + R K IQ EF +++ ++ EEQ+ L
Sbjct: 144 QAAVERLRKEQQKAEKLE-TDIRGERTSWKYQIQTERQRIRTEFNQLRSILDSEEQRVLQ 202
Query: 1169 LVDIQEAMATAHVTEILADIQSHMDRLMTQMAQARKH 1279
++ +E ++ E A++ + ++L+ ++ +H
Sbjct: 203 KLEEEEKRILDNLAEGEAEL-AQQNQLVKELISDLEH 238
>ref|XP_853298.1| PREDICTED: similar to tripartite motif-containing 6 and tripartite
motif-containing 34 [Canis familiaris].
Length = 844
Score = 55.1 bits (131), Expect = 2e-07
Identities = 38/157 (24%), Positives = 78/157 (49%), Gaps = 8/157 (5%)
Frame = +2
Query: 833 EMEAERVAKRK-CLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEELRSKD 1009
++ E + KR C+ HG L +C+ED+++IC LC H+GHQ ++E +E +
Sbjct: 441 KLNPEELLKRDLCVRHGKKLLLFCKEDRKVICWLCERSQEHRGHQTFLVEEVVKEYQENL 500
Query: 1010 SGGLKAAMIELVERLKFKSSDPKVTRDQMKVFIQ-------QEFKKVQKVIADEEQKTLH 1168
++ E + K + +D + R K IQ EF +++ ++ EEQ+ L
Sbjct: 501 QAAVERLRKEQQKAEKLE-TDIRGERTSWKYQIQTERQRIRTEFNQLRSILDSEEQRVLQ 559
Query: 1169 LVDIQEAMATAHVTEILADIQSHMDRLMTQMAQARKH 1279
++ +E ++ E A++ + ++L+ ++ +H
Sbjct: 560 KLEEEEKRILDNLAEGEAEL-AQQNQLVKELISDLEH 595
Score = 53.9 bits (128), Expect = 4e-07
Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 6/155 (3%)
Frame = +2
Query: 866 CLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEELRSK--DSGGLKAAMIE 1039
C HG L +C+ED +LIC LC H+GH ++E E + K +S G +
Sbjct: 131 CAHHGEKLQLFCKEDGKLICWLCERSQEHRGHHTVLMEEVAHEYQEKFQESLGKLRQEQQ 190
Query: 1040 LVERLKF----KSSDPKVTRDQMKVFIQQEFKKVQKVIADEEQKTLHLVDIQEAMATAHV 1207
ERL K + K + + IQ EF K++ ++ EEQ+ L ++ +E +
Sbjct: 191 EAERLTAVIIGKRTSWKNQMEPERHRIQTEFNKLRSILDKEEQRQLKKLEEEERKGLS-- 248
Query: 1208 TEILADIQSHMDRLMTQMAQARKHLIPSMNQLSQG 1312
I + + Q ++ + LI + QG
Sbjct: 249 ------ILEEAENELVQQSETLRELISDLELRCQG 277
>ref|NP_001192119.1| tripartite motif-containing protein 6 [Canis lupus familiaris].
Length = 487
Score = 53.9 bits (128), Expect = 4e-07
Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 6/155 (3%)
Frame = +2
Query: 866 CLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEELRSK--DSGGLKAAMIE 1039
C HG L +C+ED +LIC LC H+GH ++E E + K +S G +
Sbjct: 97 CAHHGEKLQLFCKEDGKLICWLCERSQEHRGHHTVLMEEVAHEYQEKFQESLGKLRQEQQ 156
Query: 1040 LVERLKF----KSSDPKVTRDQMKVFIQQEFKKVQKVIADEEQKTLHLVDIQEAMATAHV 1207
ERL K + K + + IQ EF K++ ++ EEQ+ L ++ +E +
Sbjct: 157 EAERLTAVIIGKRTSWKNQMEPERHRIQTEFNKLRSILDKEEQRQLKKLEEEERKGLS-- 214
Query: 1208 TEILADIQSHMDRLMTQMAQARKHLIPSMNQLSQG 1312
I + + Q ++ + LI + QG
Sbjct: 215 ------ILEEAENELVQQSETLRELISDLELRCQG 243
>ref|XP_538133.2| PREDICTED: similar to Midline 2 protein (Midline defect 2)
(Tripartite motif protein 1) [Canis familiaris].
Length = 685
Score = 53.9 bits (128), Expect = 4e-07
Identities = 36/156 (23%), Positives = 78/156 (50%), Gaps = 11/156 (7%)
Frame = +2
Query: 866 CLDHGLD-LSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEELRS----------KDS 1012
CLDH + ++ YC D QLIC LC ++G H+ HQ+++L++ FE+L+ K +
Sbjct: 175 CLDHENEKVNMYCVSDDQLICALCKLVGRHRDHQVASLNDRFEKLKQTLEMNLTNLVKRN 234
Query: 1013 GGLKAAMIELVERLKFKSSDPKVTRDQMKVFIQQEFKKVQKVIADEEQKTLHLVDIQEAM 1192
L+ M +L++ + +V + + +E ++ ++I +Q + + M
Sbjct: 235 SELENQMAKLIQICQ----QVEVNTAMHEAKLMEECDELVEIIQQRKQMIAVKIKETKVM 290
Query: 1193 ATAHVTEILADIQSHMDRLMTQMAQARKHLIPSMNQ 1300
+ + +A+ + ++R + QA +H++ +Q
Sbjct: 291 KLRKLAQQVANCRQCLERSTVLINQA-EHILKENDQ 325
>ref|XP_542344.2| PREDICTED: similar to 52 kDa Ro protein (Sjogren syndrome type A
antigen) (SS-A) (Ro(SS-A)) (52 kDa ribonucleoprotein
autoantigen Ro/SS-A) (Tripartite motif protein 21) (RING
finger protein 81) [Canis familiaris].
Length = 458
Score = 53.9 bits (128), Expect = 4e-07
Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 7/169 (4%)
Frame = +2
Query: 827 EIEMEAERVAKRK-CLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEELRS 1003
+I A V +R+ C HG L +C+ED +++C +C H+ H+ ++EA +E +
Sbjct: 78 QIGQNANEVTQREWCQVHGERLHLFCEEDGKILCWVCSQSQNHRNHKTVPVEEAAQEYQE 137
Query: 1004 KDSGGLKAAMIE--LVERLK----FKSSDPKVTRDQMKVFIQQEFKKVQKVIADEEQKTL 1165
K L+ E L E L+ K + K ++ K I EF + +A EEQ+ +
Sbjct: 138 KLKVALRKLRKEQKLAEELEVNTAMKRAAWKSQVERHKRRIHAEFVQQINFLAAEEQRQM 197
Query: 1166 HLVDIQEAMATAHVTEILADIQSHMDRLMTQMAQARKHLIPSMNQLSQG 1312
+D++E IL + ++ ++ Q QA + L+ + + S+G
Sbjct: 198 QRLDMEE----REQLRILGETEA----MLAQKTQALQELVVELERRSKG 238
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,076,857
Number of extensions: 1305773
Number of successful extensions: 7220
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 7176
Number of HSP's successfully gapped: 27
Length of query: 457
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 351
Effective length of database: 15,340,888
Effective search space: 5384651688
Effective search space used: 5384651688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012643
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012643
(1373 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001098484.1| tripartite motif-containing protein 44 [Bos ... 292 5e-80
Alignment gi|XP_002693251.1| PREDICTED: tripartite motif-containing 6-lik... 63 7e-10
Alignment gi|XP_869772.2| PREDICTED: tripartite motif protein 5 alpha-lik... 63 7e-10
Alignment gi|NP_001192375.1| tripartite motif-containing protein 7 [Bos t... 60 5e-09
Alignment gi|XP_002689100.1| PREDICTED: tripartite motif-containing 7 [Bo... 60 5e-09
Alignment gi|NP_001193185.1| E3 ubiquitin-protein ligase TRIM50 [Bos taur... 58 2e-08
Alignment gi|NP_001192118.1| tripartite motif-containing protein 6 [Bos t... 58 2e-08
Alignment gi|XP_002698236.1| PREDICTED: tripartite motif protein 50A-like... 58 2e-08
Alignment gi|NP_001071388.1| E3 ubiquitin-protein ligase TRIM11 [Bos taur... 56 9e-08
Alignment gi|NP_001098481.1| E3 ubiquitin-protein ligase TRIM17 [Bos taur... 55 1e-07
>ref|NP_001098484.1| tripartite motif-containing protein 44 [Bos taurus].
Length = 338
Score = 292 bits (747), Expect(2) = 5e-80
Identities = 147/155 (94%), Positives = 150/155 (96%)
Frame = +2
Query: 818 FDPEIEMEAERVAKRKCLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEEL 997
FDPEIEMEAERVAKRKC DHGLDLSTYCQEDKQLICVLCPVIGAH GH LSTLDEAFEEL
Sbjct: 160 FDPEIEMEAERVAKRKCPDHGLDLSTYCQEDKQLICVLCPVIGAHHGHHLSTLDEAFEEL 219
Query: 998 RSKDSGGLKAAMIELVERLKFKSSDPKVTRDQMKVFIQQEFKKVQKVIADEEQKTLHLVD 1177
RSKDSGGLKAAMIELVERLKFKSSDPKVTRDQMK+FIQQEFKKVQKVIADEEQK LHLVD
Sbjct: 220 RSKDSGGLKAAMIELVERLKFKSSDPKVTRDQMKMFIQQEFKKVQKVIADEEQKALHLVD 279
Query: 1178 IQEAMATAHVTEILADIQSHMDRLMTQMAQARKHL 1282
IQEAMATAHVTEILADIQSHMDRLMTQMAQA++ L
Sbjct: 280 IQEAMATAHVTEILADIQSHMDRLMTQMAQAKEQL 314
Score = 25.8 bits (55), Expect(2) = 5e-80
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 1267 SQETLDTLYESAEPRQRATKKDPVCSEE 1350
++E LDT ESAEP+ +++P ++E
Sbjct: 310 AKEQLDTSNESAEPKAEGDEEEPGGTDE 337
Score = 164 bits (415), Expect = 2e-40
Identities = 72/86 (83%), Positives = 74/86 (86%)
Frame = +2
Query: 332 MASGGGAAFEELPHDGTCDECEPDEAPGAEEVCRECGFCYCHRHAEVHGQKFPRHHLAEY 511
MASGGGAAFEELPHDGTCDECEPDEAPGAEEVCRECGFCYC HAE HGQKFPRHHLAEY
Sbjct: 1 MASGGGAAFEELPHDGTCDECEPDEAPGAEEVCRECGFCYCRHHAEAHGQKFPRHHLAEY 60
Query: 512 IHGAHQAWASGPQGGGTGEEEVEAQV 589
+H A QAW G +G G GEE VEA V
Sbjct: 61 VHCAAQAWTPGARGDGAGEEAVEAPV 86
>ref|XP_002693251.1| PREDICTED: tripartite motif-containing 6-like [Bos taurus].
Length = 495
Score = 62.8 bits (151), Expect = 7e-10
Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 6/168 (3%)
Frame = +2
Query: 827 EIEMEAERVAKRKCLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEELRSK 1006
E+++ E K C HG L +C+ED ++IC LC H GH ++E +E + K
Sbjct: 83 EVKLSLEEQEKHLCAHHGEKLLLFCEEDGKVICWLCERSQEHHGHPTFLMEEVAQEYQKK 142
Query: 1007 DSGGLKAAMIELVERLKFKS------SDPKVTRDQMKVFIQQEFKKVQKVIADEEQKTLH 1168
L+ E E + +S + K + +Q EFKK+++++ EE+K L
Sbjct: 143 LQAALERLKQEQQEAEELESDFREEIAAWKNQTQHERQNVQAEFKKLREILDSEERKELQ 202
Query: 1169 LVDIQEAMATAHVTEILADIQSHMDRLMTQMAQARKHLIPSMNQLSQG 1312
+ +E T IL + + + L+ Q +Q ++LI + QG
Sbjct: 203 KLKAEE-------TAILCTMANSENELV-QQSQLVRNLISDIEHRLQG 242
>ref|XP_869772.2| PREDICTED: tripartite motif protein 5 alpha-like isoform 2 [Bos
taurus].
Length = 321
Score = 62.8 bits (151), Expect = 7e-10
Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 6/168 (3%)
Frame = +2
Query: 827 EIEMEAERVAKRKCLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEELRSK 1006
E+++ E K C HG L +C+ED ++IC LC H GH ++E +E + K
Sbjct: 83 EVKLSLEEQEKHLCAHHGEKLLLFCEEDGKVICWLCERSQEHHGHPTFLMEEVAQEYQKK 142
Query: 1007 DSGGLKAAMIELVERLKFKS------SDPKVTRDQMKVFIQQEFKKVQKVIADEEQKTLH 1168
L+ E E + +S + K + +Q EFKK+++++ EE+K L
Sbjct: 143 LQAALERLKQEQQEAEELESDFREEIAAWKNQTQHERQNVQAEFKKLREILDSEERKELQ 202
Query: 1169 LVDIQEAMATAHVTEILADIQSHMDRLMTQMAQARKHLIPSMNQLSQG 1312
+ +E T IL + + + L+ Q +Q ++LI + QG
Sbjct: 203 KLKAEE-------TAILCTMANSENELV-QQSQLVRNLISDIEHRLQG 242
>ref|NP_001192375.1| tripartite motif-containing protein 7 [Bos taurus].
Length = 506
Score = 60.1 bits (144), Expect = 5e-09
Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 6/143 (4%)
Frame = +2
Query: 866 CLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEELRSKDSGGLKAAMIELV 1045
C HG L YCQ+D + ICV+C H+ H + LDEA +E + LK +L
Sbjct: 125 CAQHGEPLKLYCQDDGRAICVVCDRAREHRAHAVLPLDEAVQEAKELLESRLKVLKKDLE 184
Query: 1046 ERLKFKSSDPKVTRDQMKVF------IQQEFKKVQKVIADEEQKTLHLVDIQEAMATAHV 1207
+ F+S++ K +++ +K + EF+ ++ + ++E + L ++ T
Sbjct: 185 DYEAFRSTEEKESKELLKQMAAEQEKVGAEFQALRAFLVEQEGRLLGRLEELSREVTQKQ 244
Query: 1208 TEILADIQSHMDRLMTQMAQARK 1276
E LA + + +L +Q ++
Sbjct: 245 NENLAQLGDEIAQLSKLSSQIQE 267
>ref|XP_002689100.1| PREDICTED: tripartite motif-containing 7 [Bos taurus].
Length = 506
Score = 60.1 bits (144), Expect = 5e-09
Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 6/143 (4%)
Frame = +2
Query: 866 CLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEELRSKDSGGLKAAMIELV 1045
C HG L YCQ+D + ICV+C H+ H + LDEA +E + LK +L
Sbjct: 125 CAQHGEPLKLYCQDDGRAICVVCDRAREHRAHAVLPLDEAVQEAKELLESRLKVLKKDLE 184
Query: 1046 ERLKFKSSDPKVTRDQMKVF------IQQEFKKVQKVIADEEQKTLHLVDIQEAMATAHV 1207
+ F+S++ K +++ +K + EF+ ++ + ++E + L ++ T
Sbjct: 185 DYEAFRSTEEKESKELLKQMAAEQEKVGAEFQALRAFLVEQEGRLLGRLEELSREVTQKQ 244
Query: 1208 TEILADIQSHMDRLMTQMAQARK 1276
E LA + + +L +Q ++
Sbjct: 245 NENLAQLGDEIAQLSKLSSQIQE 267
>ref|NP_001193185.1| E3 ubiquitin-protein ligase TRIM50 [Bos taurus].
Length = 487
Score = 57.8 bits (138), Expect = 2e-08
Identities = 38/148 (25%), Positives = 71/148 (47%)
Frame = +2
Query: 866 CLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEELRSKDSGGLKAAMIELV 1045
C H LS +C++D++LIC LC ++GAHQ H+++ + + ++ + AA+I +
Sbjct: 89 CAHHRNPLSLFCEKDQELICGLCGLLGAHQHHRVTPVSTVYSRMKEE-----LAALISDL 143
Query: 1046 ERLKFKSSDPKVTRDQMKVFIQQEFKKVQKVIADEEQKTLHLVDIQEAMATAHVTEILAD 1225
++ + K + + I E VI E Q+ HLVD ++A V
Sbjct: 144 KQEQKKVDEQIAKLVNNRTRIVNESDVFSWVIRREFQELHHLVDEEKARCLEGVEGHTRG 203
Query: 1226 IQSHMDRLMTQMAQARKHLIPSMNQLSQ 1309
+ + +D + Q A++ L+ + L Q
Sbjct: 204 LVASLDMQLEQARGAQERLVQATGVLEQ 231
>ref|NP_001192118.1| tripartite motif-containing protein 6 [Bos taurus].
Length = 487
Score = 57.8 bits (138), Expect = 2e-08
Identities = 41/155 (26%), Positives = 71/155 (45%), Gaps = 6/155 (3%)
Frame = +2
Query: 866 CLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEELRSKDSGGLKAAMIELV 1045
C+ HG L +C+ED +LIC LC H+GH ++E +E + K LK E
Sbjct: 97 CVHHGEKLQLFCEEDGKLICWLCERSQEHRGHHTFLMEEIAQEYQEKFQESLKKLRQEQQ 156
Query: 1046 ERLKF------KSSDPKVTRDQMKVFIQQEFKKVQKVIADEEQKTLHLVDIQEAMATAHV 1207
E K K K + + IQ++F ++ ++ EEQ+ L ++ +E +
Sbjct: 157 EAEKLAAVIREKRISWKNQMEPERHRIQKQFDHLRSILDKEEQRQLKKLEEEERRGLNII 216
Query: 1208 TEILADIQSHMDRLMTQMAQARKHLIPSMNQLSQG 1312
E A+++ + Q +Q+ + LI + QG
Sbjct: 217 AE--AEVE------LVQQSQSLRELISDLEHRCQG 243
>ref|XP_002698236.1| PREDICTED: tripartite motif protein 50A-like [Bos taurus].
Length = 487
Score = 57.8 bits (138), Expect = 2e-08
Identities = 38/148 (25%), Positives = 71/148 (47%)
Frame = +2
Query: 866 CLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEELRSKDSGGLKAAMIELV 1045
C H LS +C++D++LIC LC ++GAHQ H+++ + + ++ + AA+I +
Sbjct: 89 CAHHRNPLSLFCEKDQELICGLCGLLGAHQHHRVTPVSTVYSRMKEE-----LAALISDL 143
Query: 1046 ERLKFKSSDPKVTRDQMKVFIQQEFKKVQKVIADEEQKTLHLVDIQEAMATAHVTEILAD 1225
++ + K + + I E VI E Q+ HLVD ++A V
Sbjct: 144 KQEQKKVDEQIAKLVNNRTRIVNESDVFSWVIRREFQELHHLVDEEKARCLEGVEGHTRG 203
Query: 1226 IQSHMDRLMTQMAQARKHLIPSMNQLSQ 1309
+ + +D + Q A++ L+ + L Q
Sbjct: 204 LVASLDMQLEQARGAQERLVQATGVLEQ 231
>ref|NP_001071388.1| E3 ubiquitin-protein ligase TRIM11 [Bos taurus].
Length = 468
Score = 55.8 bits (133), Expect = 9e-08
Identities = 41/171 (23%), Positives = 79/171 (46%), Gaps = 14/171 (8%)
Frame = +2
Query: 866 CLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEELRSKDSGGLKAAMIELV 1045
C H L+ +C ++ +L+C C G H H++ L +A E+L+SK L+ ++
Sbjct: 92 CAAHREPLAAFCGDELRLLCAACERSGEHWAHRVRPLQDAAEDLKSKLEKSLEHLRKQME 151
Query: 1046 ERLKFKSSDPKVTRDQMKVFIQQ------EFKKVQKVIADEEQKTLHLVDIQEAMATAHV 1207
+ L F++ + K+ Q EF+++++++ +EEQ L ++ +E
Sbjct: 152 DALLFQAQAEETCSLWQKMVETQRQNVLTEFERLRRLLVEEEQLLLQRLEEEE------- 204
Query: 1208 TEILADIQSHMDRLMTQMAQARKHL--------IPSMNQLSQGRGRRRRTQ 1336
E+L ++ RL Q AQ + + +P++ L R RR Q
Sbjct: 205 LEVLPPLRESAARLGQQSAQLAELITELEGRCQLPALGLLQDIRDTLRRVQ 255
>ref|NP_001098481.1| E3 ubiquitin-protein ligase TRIM17 [Bos taurus].
Length = 475
Score = 55.1 bits (131), Expect = 1e-07
Identities = 37/158 (23%), Positives = 78/158 (49%), Gaps = 9/158 (5%)
Frame = +2
Query: 866 CLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEELRSKDSGGLKAAMIELV 1045
C H L +C++D++ IC++C H+ H++ ++EA +E + K ++ E++
Sbjct: 99 CQVHRELLKLFCEDDQRPICIICRESQEHRPHRVVPIEEAVQEYKLKLEEDMEHLREEMM 158
Query: 1046 ERLKFKSSDPKVTRD------QMKVFIQQEFKKVQKVIADEEQKTLHLVDIQEAMATAHV 1207
+ K ++ + + + + I EF+K+ + +E+Q+ L + +E A +
Sbjct: 159 KTEKLQAKEEHTLAEWQEKVKERRERIMVEFEKMGLFLMEEKQRLLQALKKEEEETVAKL 218
Query: 1208 TEILADI--QSH-MDRLMTQMAQARKHLIPSMNQLSQG 1312
E A + QSH ++RL+ Q+ +H M Q +G
Sbjct: 219 QESTASLKQQSHSLERLLLQLEDRNEHTPLQMLQDMKG 256
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,471,810
Number of extensions: 1520711
Number of successful extensions: 6763
Number of sequences better than 1.0e-05: 30
Number of HSP's gapped: 6726
Number of HSP's successfully gapped: 32
Length of query: 457
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 351
Effective length of database: 14,174,046
Effective search space: 4975090146
Effective search space used: 4975090146
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012643
(1373 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122913.1| PREDICTED: tripartite motif-containing prote... 301 1e-83
Alignment gi|NP_001116680.1| tripartite motif-containing protein 15 [Sus ... 58 1e-08
Alignment gi|XP_003124381.1| PREDICTED: tripartite motif-containing prote... 57 2e-08
Alignment gi|NP_999351.1| E3 ubiquitin-protein ligase TRIM50 [Sus scrofa]. 55 9e-08
Alignment gi|XP_003127811.1| PREDICTED: tripartite motif-containing prote... 54 2e-07
Alignment gi|XP_003360458.1| PREDICTED: probable E3 ubiquitin-protein lig... 54 2e-07
Alignment gi|NP_001121951.1| tripartite motif-containing protein 39 [Sus ... 54 3e-07
Alignment gi|XP_003123673.2| PREDICTED: e3 ubiquitin-protein ligase TRIM1... 51 2e-06
Alignment gi|XP_001928415.1| PREDICTED: tripartite motif-containing prote... 51 2e-06
Alignment gi|NP_001157121.1| 52 kDa Ro protein [Sus scrofa]. 50 4e-06
>ref|XP_003122913.1| PREDICTED: tripartite motif-containing protein 44-like [Sus scrofa].
Length = 345
Score = 301 bits (772), Expect(2) = 1e-83
Identities = 152/155 (98%), Positives = 154/155 (99%)
Frame = +2
Query: 818 FDPEIEMEAERVAKRKCLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEEL 997
FDPEIEMEAERVAKRKCLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEEL
Sbjct: 163 FDPEIEMEAERVAKRKCLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEEL 222
Query: 998 RSKDSGGLKAAMIELVERLKFKSSDPKVTRDQMKVFIQQEFKKVQKVIADEEQKTLHLVD 1177
RSKDSGGLKAAMIELVERLKFKSSDPKVTRDQMKVFIQQEFKKVQKVIADEEQKTLHLVD
Sbjct: 223 RSKDSGGLKAAMIELVERLKFKSSDPKVTRDQMKVFIQQEFKKVQKVIADEEQKTLHLVD 282
Query: 1178 IQEAMATAHVTEILADIQSHMDRLMTQMAQARKHL 1282
IQEAMATAHVTEILADIQSHMDRLMTQMAQA++ L
Sbjct: 283 IQEAMATAHVTEILADIQSHMDRLMTQMAQAKEQL 317
Score = 27.7 bits (60), Expect(2) = 1e-83
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = +3
Query: 1308 KAEGDEEGPSVQ*REEE 1358
KAEGDEEGPS EEE
Sbjct: 327 KAEGDEEGPSGASEEEE 343
Score = 195 bits (496), Expect = 4e-50
Identities = 85/86 (98%), Positives = 86/86 (100%)
Frame = +2
Query: 332 MASGGGAAFEELPHDGTCDECEPDEAPGAEEVCRECGFCYCHRHAEVHGQKFPRHHLAEY 511
MASGGGAAFEELPHDGTCDECEPDEAPGAEEVCRECGFCYCHRHAEVHGQKFPRHHLAEY
Sbjct: 1 MASGGGAAFEELPHDGTCDECEPDEAPGAEEVCRECGFCYCHRHAEVHGQKFPRHHLAEY 60
Query: 512 IHGAHQAWASGPQGGGTGEEEVEAQV 589
+HGAHQAWASGPQGGGTGEEEVEAQV
Sbjct: 61 VHGAHQAWASGPQGGGTGEEEVEAQV 86
>ref|NP_001116680.1| tripartite motif-containing protein 15 [Sus scrofa].
Length = 461
Score = 58.2 bits (139), Expect = 1e-08
Identities = 37/158 (23%), Positives = 73/158 (46%), Gaps = 10/158 (6%)
Frame = +2
Query: 866 CLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEELRSKDSGGLKAAMIELV 1045
C +HG + +C+ D + +CV C +HQ H + LDEA + R + G L+A + E
Sbjct: 79 CEEHGEKIYFFCENDAEFLCVFCREGPSHQAHAVGFLDEAIQPYRDRLRGRLEALITE-- 136
Query: 1046 ERLKFKSSDPKVTRDQMKVFIQQEFKKVQKVIADEEQKTLHL----------VDIQEAMA 1195
RD+++ +E +K+Q ++A E K H+ + Q+ +
Sbjct: 137 -------------RDEIEDMKSREDQKLQVLLAQIESKKRHVEATFERLQQELGEQQRLL 183
Query: 1196 TAHVTEILADIQSHMDRLMTQMAQARKHLIPSMNQLSQ 1309
A +TE+ I D+ ++++++ L + +L +
Sbjct: 184 LARLTELERQIWKERDKYISKLSEEVARLGTQVKELEE 221
>ref|XP_003124381.1| PREDICTED: tripartite motif-containing protein 4 [Sus scrofa].
Length = 516
Score = 57.0 bits (136), Expect = 2e-08
Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 6/154 (3%)
Frame = +2
Query: 866 CLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEELRSKDSGGLKAAMIELV 1045
C HG L +C++D++L+C++C HQ H ++ +DEAF+ R K +L
Sbjct: 129 CDRHGEPLRLFCEDDQRLMCMVCRESQEHQAHTMAPMDEAFQSYRGKLLEAQCHLTAKLE 188
Query: 1046 ERLKFKSSDPKVT---RDQMK---VFIQQEFKKVQKVIADEEQKTLHLVDIQEAMATAHV 1207
+ + + + K T +++MK + + EF K++ + +EEQ L + +E
Sbjct: 189 KAIGLQDLEMKNTAEWKEKMKNQRLRLSAEFAKLRLFLTEEEQLFLQRLSQEE------- 241
Query: 1208 TEILADIQSHMDRLMTQMAQARKHLIPSMNQLSQ 1309
E Q ++QM A K LI + + SQ
Sbjct: 242 -EETKKKQREKTLRLSQMVSALKQLISEVKEKSQ 274
>ref|NP_999351.1| E3 ubiquitin-protein ligase TRIM50 [Sus scrofa].
Length = 486
Score = 55.1 bits (131), Expect = 9e-08
Identities = 37/148 (25%), Positives = 70/148 (47%)
Frame = +2
Query: 866 CLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEELRSKDSGGLKAAMIELV 1045
C H LS +C++D++LIC LC ++G+HQ H+++ + + ++ + AA+I +
Sbjct: 89 CTHHRNPLSLFCEKDQELICGLCGLLGSHQHHRVTPVSTVYSRMKEE-----LAALISDL 143
Query: 1046 ERLKFKSSDPKVTRDQMKVFIQQEFKKVQKVIADEEQKTLHLVDIQEAMATAHVTEILAD 1225
++ + K + + I E VI E Q+ HLVD ++A V
Sbjct: 144 KQEQKKVEEQVAKLVNNRTRIVNESDVFSWVIRREFQELHHLVDEEKARCLEGVEGHTRG 203
Query: 1226 IQSHMDRLMTQMAQARKHLIPSMNQLSQ 1309
+ + +D + Q A++ L + L Q
Sbjct: 204 LVASLDMQLEQARGAQERLAQATCMLEQ 231
>ref|XP_003127811.1| PREDICTED: tripartite motif-containing protein 62-like [Sus scrofa].
Length = 475
Score = 54.3 bits (129), Expect = 2e-07
Identities = 34/149 (22%), Positives = 72/149 (48%), Gaps = 6/149 (4%)
Frame = +2
Query: 848 RVAKRKCLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEELRSKDSGGLKA 1027
R A R C H + +C D+ L+C C H+ HQ++ +D+AFEEL+ + L+A
Sbjct: 87 RRAARPCQAHD-KVKLFCLTDRALLCFFCDEPALHEQHQVTGIDDAFEELQRELKEQLQA 145
Query: 1028 AM------IELVERLKFKSSDPKVTRDQMKVFIQQEFKKVQKVIADEEQKTLHLVDIQEA 1189
E ++ LK + ++ K + ++ I + F+++ +++ + ++ L ++
Sbjct: 146 LQDSEREHTEALQLLKRQLAETKSSTKSLRTTIGEAFERLHRLLRERQKAMLEELE---- 201
Query: 1190 MATAHVTEILADIQSHMDRLMTQMAQARK 1276
A L DI+ + R Q+ + ++
Sbjct: 202 ---ADTARTLTDIEQKVQRYSQQLRKVQE 227
>ref|XP_003360458.1| PREDICTED: probable E3 ubiquitin-protein ligase MID2 [Sus scrofa].
Length = 685
Score = 53.9 bits (128), Expect = 2e-07
Identities = 36/156 (23%), Positives = 78/156 (50%), Gaps = 11/156 (7%)
Frame = +2
Query: 866 CLDHGLD-LSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEELRS----------KDS 1012
CLDH + ++ YC D QLIC LC ++G H+ HQ+++L++ FE+L+ K +
Sbjct: 175 CLDHENEKVNMYCVSDDQLICALCKLVGRHRDHQVASLNDRFEKLKQTLEMNLTNLVKRN 234
Query: 1013 GGLKAAMIELVERLKFKSSDPKVTRDQMKVFIQQEFKKVQKVIADEEQKTLHLVDIQEAM 1192
L+ M +L++ + +V + + +E ++ ++I +Q + + M
Sbjct: 235 SELENQMAKLIQICQ----QVEVNTAMHEAKLMEECDELVEIIQQRKQMIAVKIKETKVM 290
Query: 1193 ATAHVTEILADIQSHMDRLMTQMAQARKHLIPSMNQ 1300
+ + +A+ + ++R + QA +H++ +Q
Sbjct: 291 KLRKLAQQVANCRQCLERSTVLINQA-EHILKENDQ 325
>ref|NP_001121951.1| tripartite motif-containing protein 39 [Sus scrofa].
Length = 488
Score = 53.5 bits (127), Expect = 3e-07
Identities = 30/113 (26%), Positives = 60/113 (53%), Gaps = 6/113 (5%)
Frame = +2
Query: 866 CLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEELRSKDSGGLKAAMIELV 1045
C H LS +C ED++ +C++C + H+ H + LD+A +E + K L+ +L
Sbjct: 107 CPQHHEALSLFCYEDQEAVCLICAISHTHRAHTVVPLDDATQEYKEKLQKCLEPLEQKLQ 166
Query: 1046 ERLKFKSSDPKVTRDQMKVF------IQQEFKKVQKVIADEEQKTLHLVDIQE 1186
E + KSS+ K + ++ I +EF+++ + + +E+Q L ++ +E
Sbjct: 167 EITRCKSSEEKKPGELKRLVESRRQQILKEFEELHRRLDEEQQVLLSRLEEEE 219
>ref|XP_003123673.2| PREDICTED: e3 ubiquitin-protein ligase TRIM17-like [Sus scrofa].
Length = 528
Score = 50.8 bits (120), Expect = 2e-06
Identities = 40/169 (23%), Positives = 81/169 (47%), Gaps = 22/169 (13%)
Frame = +2
Query: 866 CLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEELRSK------------- 1006
C H L +C++D+ ICV+C H+ H++ ++EA +E + K
Sbjct: 152 CQVHKELLKLFCEDDQSPICVICRESQEHRPHRVVPIEEAVQEYKLKLEKDMEYLREEMM 211
Query: 1007 DSGGLKA----AMIELVERLKFKSSDPKVTRDQMKVFIQQEFKKVQKVIADEEQKTLHLV 1174
+G L+A + E E++K + V ++M +F+ +E +++ + + EE++ +
Sbjct: 212 KTGNLQAKEEQTLAEWQEKVKERREHIMVEFEKMDLFLMEEKQRLLQALKKEEEEM--VA 269
Query: 1175 DIQEAMA----TAHVTE-ILADIQSHMDRLMTQMAQARKHLIPSMNQLS 1306
+Q+++A +H E +L ++ +R Q Q K L+ N LS
Sbjct: 270 KLQKSIALLEQQSHSLEMLLLQLEDKNERTPLQKLQDMKDLLSRKNNLS 318
>ref|XP_001928415.1| PREDICTED: tripartite motif-containing protein 35 [Sus scrofa].
Length = 493
Score = 50.8 bits (120), Expect = 2e-06
Identities = 40/177 (22%), Positives = 86/177 (48%), Gaps = 14/177 (7%)
Frame = +2
Query: 860 RKCLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEELRSKDSGGLKAAMIE 1039
R C H S +C +DK+L+C C HQGH++ + + + R+K ++ A++E
Sbjct: 99 RLCRLHRGQFSLFCLDDKELLCCSCQADPRHQGHRVQPVKDTAHDFRAK-CRNMEHALLE 157
Query: 1040 LVERL--KFKSSDPKVTRDQMKVF-----IQQEFKKVQKVIADEEQKTLHLVDIQ----E 1186
+ +S + V +Q++ I+QEF K+++ + EEQ L + + +
Sbjct: 158 KAKAFWAMRRSYEAIVKHNQVEAARLEGRIRQEFDKLREFLRVEEQAILDAMAEEARQKQ 217
Query: 1187 AMATAHVTEILADIQS---HMDRLMTQMAQARKHLIPSMNQLSQGRGRRRRTQCAVK 1348
+A + ++ D+++ ++RL +M + ++ L + + R+RR C ++
Sbjct: 218 LLAEEKMKQLAEDMEALAHEVERLQVEMKE------DDISFLMKHKSRKRRLFCTME 268
>ref|NP_001157121.1| 52 kDa Ro protein [Sus scrofa].
Length = 469
Score = 49.7 bits (117), Expect = 4e-06
Identities = 41/155 (26%), Positives = 75/155 (48%), Gaps = 6/155 (3%)
Frame = +2
Query: 866 CLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEELRSKDSGGL-----KAA 1030
C HG L +C++D +++C +C H+ H + ++EA +E + K L K
Sbjct: 92 CAVHGEKLHLFCKDDGKVLCWVCSQSQKHRDHTMVPIEEAAQEYQEKLQVALEKLRNKQE 151
Query: 1031 MIELVER-LKFKSSDPKVTRDQMKVFIQQEFKKVQKVIADEEQKTLHLVDIQEAMATAHV 1207
E +E + K + K + K+ I +EF + + +A+EEQ+ L ++ +E
Sbjct: 152 QAEKLEADIATKRAAWKGKVEAHKLRIHEEFVRQKNFLAEEEQRQLQKLEEEE------- 204
Query: 1208 TEILADIQSHMDRLMTQMAQARKHLIPSMNQLSQG 1312
E L + + RL Q +QA + LI + + S+G
Sbjct: 205 REQLKALGATEARL-AQQSQALQGLIAELERRSRG 238
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,455,206
Number of extensions: 1386704
Number of successful extensions: 4291
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 4265
Number of HSP's successfully gapped: 14
Length of query: 457
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 355
Effective length of database: 8,804,438
Effective search space: 3125575490
Effective search space used: 3125575490
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012643
(1373 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_064663.2| tripartite motif-containing protein 44 [Mus mus... 294 6e-81
Alignment gi|NP_001019305.1| tripartite motif-containing 15 isoform 2 [Mu... 60 4e-09
Alignment gi|NP_001171343.1| tripartite motif-containing 15 isoform 1 [Mu... 60 4e-09
Alignment gi|NP_001013637.1| tripartite motif-containing protein 6 [Mus m... 60 5e-09
Alignment gi|NP_001034136.1| tripartite motif-containing protein 58 [Mus ... 58 2e-08
Alignment gi|NP_835211.1| tripartite motif-containing protein 62 [Mus mus... 54 2e-07
Alignment gi|NP_084255.2| tripartite motif-containing protein 35 [Mus mus... 54 3e-07
Alignment gi|NP_035975.1| probable E3 ubiquitin-protein ligase MID2 [Mus ... 54 3e-07
Alignment gi|NP_033125.2| tripartite motif-containing protein 30 [Mus mus... 52 8e-07
Alignment gi|NP_001230845.1| tripartite motif-containing 34B [Mus musculu... 51 2e-06
>ref|NP_064663.2| tripartite motif-containing protein 44 [Mus musculus].
Length = 345
Score = 294 bits (752), Expect(2) = 6e-81
Identities = 147/155 (94%), Positives = 152/155 (98%)
Frame = +2
Query: 818 FDPEIEMEAERVAKRKCLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEEL 997
FDPEIEMEAERVAKRKC DHGLDLSTYCQED+QLICVLCPVIGAH+GHQLSTLDEAFEEL
Sbjct: 164 FDPEIEMEAERVAKRKCPDHGLDLSTYCQEDRQLICVLCPVIGAHRGHQLSTLDEAFEEL 223
Query: 998 RSKDSGGLKAAMIELVERLKFKSSDPKVTRDQMKVFIQQEFKKVQKVIADEEQKTLHLVD 1177
RSKDSGGLKAAMIELVERLKFKSSDPKVTRDQMK+FIQQEFKKVQKVIADEEQK LHLVD
Sbjct: 224 RSKDSGGLKAAMIELVERLKFKSSDPKVTRDQMKIFIQQEFKKVQKVIADEEQKALHLVD 283
Query: 1178 IQEAMATAHVTEILADIQSHMDRLMTQMAQARKHL 1282
IQEAMATAHVTEILADIQSHMDRLMTQMAQA++ L
Sbjct: 284 IQEAMATAHVTEILADIQSHMDRLMTQMAQAKEQL 318
Score = 26.6 bits (57), Expect(2) = 6e-81
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +3
Query: 1308 KAEGDEEGPSVQ*REEE 1358
KAEGDEEGPS EE+
Sbjct: 328 KAEGDEEGPSGASEEED 344
Score = 126 bits (316), Expect = 5e-29
Identities = 62/97 (63%), Positives = 67/97 (69%), Gaps = 11/97 (11%)
Frame = +2
Query: 332 MASGGGAAFEELPHDGTCDECEPDEAPGAEEVCRECGFCYCHRHAEVHGQKFPRHHLAEY 511
MASG GAA EELP DGTCDECEPDEAPGAEEVCR+CGFCYC RHA+ H QKF H LA Y
Sbjct: 1 MASGVGAACEELPPDGTCDECEPDEAPGAEEVCRDCGFCYCRRHADAHRQKFLSHRLAAY 60
Query: 512 IHGAHQAWASGPQGG-----------GTGEEEVEAQV 589
+HGA QAW GG G E EVE++V
Sbjct: 61 VHGA-QAWTPPASGGDDALPEDGEAKGEAEGEVESEV 96
>ref|NP_001019305.1| tripartite motif-containing 15 isoform 2 [Mus musculus].
Length = 290
Score = 60.1 bits (144), Expect = 4e-09
Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 11/159 (6%)
Frame = +2
Query: 866 CLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEELRSKDSGGLKAAMIELV 1045
C +HG + +C+ D +L+CV C AHQ H + LDEA + R + L+A +E
Sbjct: 78 CEEHGEKIYFFCKTDAELLCVFCREGPAHQAHTVGFLDEAIQPYRDRLRSRLEALRME-- 135
Query: 1046 ERLKFKSSDPKVTRDQ--MKVFIQQE---------FKKVQKVIADEEQKTLHLVDIQEAM 1192
+ K D K DQ +V +Q E F+++++ + D+ L+ ++ E
Sbjct: 136 ---RDKIEDRKCQEDQKLQEVLMQVESKKHQVEAAFERLKRELVDQRCLLLNRLEELERQ 192
Query: 1193 ATAHVTEILADIQSHMDRLMTQMAQARKHLIPSMNQLSQ 1309
E ++ + +DRL TQ+ + + ++L Q
Sbjct: 193 ICKEREEYISKVSQEVDRLSTQVEELEEKCQQPASELLQ 231
>ref|NP_001171343.1| tripartite motif-containing 15 isoform 1 [Mus musculus].
Length = 292
Score = 60.1 bits (144), Expect = 4e-09
Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 11/159 (6%)
Frame = +2
Query: 866 CLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEELRSKDSGGLKAAMIELV 1045
C +HG + +C+ D +L+CV C AHQ H + LDEA + R + L+A +E
Sbjct: 78 CEEHGEKIYFFCKTDAELLCVFCREGPAHQAHTVGFLDEAIQPYRDRLRSRLEALRME-- 135
Query: 1046 ERLKFKSSDPKVTRDQ--MKVFIQQE---------FKKVQKVIADEEQKTLHLVDIQEAM 1192
+ K D K DQ +V +Q E F+++++ + D+ L+ ++ E
Sbjct: 136 ---RDKIEDRKCQEDQKLQEVLMQVESKKHQVEAAFERLKRELVDQRCLLLNRLEELERQ 192
Query: 1193 ATAHVTEILADIQSHMDRLMTQMAQARKHLIPSMNQLSQ 1309
E ++ + +DRL TQ+ + + ++L Q
Sbjct: 193 ICKEREEYISKVSQEVDRLSTQVEELEEKCQQPASELLQ 231
>ref|NP_001013637.1| tripartite motif-containing protein 6 [Mus musculus].
Length = 488
Score = 59.7 bits (143), Expect = 5e-09
Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 6/155 (3%)
Frame = +2
Query: 866 CLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEELRSKDSGGLKAAMIELV 1045
C HG L +C+ED +LIC LC H+GH ++E +E + LK E
Sbjct: 97 CALHGEKLQLFCKEDGKLICWLCERSQEHRGHHTFLMEEVAQEYQDMFQESLKKLRREQQ 156
Query: 1046 ERLKFKS------SDPKVTRDQMKVFIQQEFKKVQKVIADEEQKTLHLVDIQEAMATAHV 1207
E K K+ K + K IQ EFK+++ ++ EEQ+ L ++++E + +
Sbjct: 157 EAEKLKALIQEKRESWKSQVEPEKRRIQTEFKQLRSILDREEQRELKKLEVEERKGLSII 216
Query: 1208 TEILADIQSHMDRLMTQMAQARKHLIPSMNQLSQG 1312
+ D + +Q+ K LI + QG
Sbjct: 217 EKAEGD--------LIHQSQSLKDLISDLEHRCQG 243
>ref|NP_001034136.1| tripartite motif-containing protein 58 [Mus musculus].
Length = 485
Score = 58.2 bits (139), Expect = 2e-08
Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 6/156 (3%)
Frame = +2
Query: 860 RKCLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEELRSKDSGGLKAAMIE 1039
R+C HG DLS +C+ED+ ++C +C H+ H+ TL EA + L+ E
Sbjct: 93 RQCARHGEDLSHFCEEDQTMLCWVCDTSPEHRSHRTETLQEAASRYQRMLRASLELVKKE 152
Query: 1040 LVERLKFKSSDPKVT---RDQMKVFIQQ---EFKKVQKVIADEEQKTLHLVDIQEAMATA 1201
+ E L +++ K T ++++++ Q+ EF+K + +A EEQ L ++ +E AT
Sbjct: 153 MEEALTQEANVGKKTIIWKEKVEMQRQRFRLEFEKHRGFLAQEEQLQLRRLE-EEERAT- 210
Query: 1202 HVTEILADIQSHMDRLMTQMAQARKHLIPSMNQLSQ 1309
L ++ +RL Q +A K L + + SQ
Sbjct: 211 -----LQRLRDSRNRL-AQQNKALKELAEELEERSQ 240
>ref|NP_835211.1| tripartite motif-containing protein 62 [Mus musculus].
Length = 475
Score = 54.3 bits (129), Expect = 2e-07
Identities = 34/149 (22%), Positives = 72/149 (48%), Gaps = 6/149 (4%)
Frame = +2
Query: 848 RVAKRKCLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEELRSKDSGGLKA 1027
R A R C H + +C D+ L+C C H+ HQ++ +D+AFEEL+ + L+A
Sbjct: 87 RRAARPCQAHD-KVKLFCLTDRALLCFFCDEPALHEQHQVTGIDDAFEELQRELKEQLQA 145
Query: 1028 AM------IELVERLKFKSSDPKVTRDQMKVFIQQEFKKVQKVIADEEQKTLHLVDIQEA 1189
E ++ LK + ++ K + ++ I + F+++ +++ + ++ L ++
Sbjct: 146 LQDSEREHTEALQLLKRQLAETKSSTKSLRTTIGEAFERLHRLLRERQKAMLEELE---- 201
Query: 1190 MATAHVTEILADIQSHMDRLMTQMAQARK 1276
A L DI+ + R Q+ + ++
Sbjct: 202 ---ADTARTLTDIEQKVQRYSQQLRKVQE 227
>ref|NP_084255.2| tripartite motif-containing protein 35 [Mus musculus].
Length = 516
Score = 53.9 bits (128), Expect = 3e-07
Identities = 49/189 (25%), Positives = 80/189 (42%), Gaps = 22/189 (11%)
Frame = +2
Query: 848 RVAKRKCLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEELRSKDSGGLKA 1027
R + R C H L+ +C EDK+L+C C HQ H++ + + ++ R+ K
Sbjct: 110 RRSPRPCRAHRAPLTLFCLEDKELLCCACQADARHQEHRVQPIKDTAQDFRA------KC 163
Query: 1028 AMIELVERLKFK------------SSDPKVTRDQMKVFIQQEFKKVQKVIADEEQKTL-- 1165
+E V R K K + +V ++ I+ EF K++ + EEQ TL
Sbjct: 164 KNMEHVLREKAKAFWALRRTYEAIAKHNEVQTTWLEGRIRDEFDKLRDFLRVEEQATLDA 223
Query: 1166 --------HLVDIQEAMATAHVTEILADIQSHMDRLMTQMAQARKHLIPSMNQLSQGRGR 1321
HL ++ A TE LA ++RL +M + M L + + R
Sbjct: 224 MKEESRKKHLQAEEKMKQLAEQTEALA---REIERLQMEMKE------DDMTFLMKHKSR 274
Query: 1322 RRRTQCAVK 1348
+RR C V+
Sbjct: 275 KRRLFCTVE 283
>ref|NP_035975.1| probable E3 ubiquitin-protein ligase MID2 [Mus musculus].
Length = 685
Score = 53.9 bits (128), Expect = 3e-07
Identities = 36/156 (23%), Positives = 78/156 (50%), Gaps = 11/156 (7%)
Frame = +2
Query: 866 CLDHGLD-LSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEELRS----------KDS 1012
CLDH + ++ YC D QLIC LC ++G H+ HQ+++L++ FE+L+ K +
Sbjct: 175 CLDHENEKVNMYCVSDDQLICALCKLVGRHRDHQVASLNDRFEKLKQTLEMNLTNLVKRN 234
Query: 1013 GGLKAAMIELVERLKFKSSDPKVTRDQMKVFIQQEFKKVQKVIADEEQKTLHLVDIQEAM 1192
L+ M +L++ + +V + + +E ++ ++I +Q + + M
Sbjct: 235 SELENQMAKLIQICQ----QVEVNTAMHEAKLMEECDELVEIIQQRKQMIAVKIKETKVM 290
Query: 1193 ATAHVTEILADIQSHMDRLMTQMAQARKHLIPSMNQ 1300
+ + +A+ + ++R + QA +H++ +Q
Sbjct: 291 KLRKLAQQVANCRQCLERSTVLINQA-EHILKENDQ 325
>ref|NP_033125.2| tripartite motif-containing protein 30 [Mus musculus].
Length = 496
Score = 52.4 bits (124), Expect = 8e-07
Identities = 43/185 (23%), Positives = 85/185 (45%), Gaps = 20/185 (10%)
Frame = +2
Query: 866 CLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEELRSKDSGGL----KAAM 1033
C HG L +C++D +IC LC H+GHQ + ++E +E + K G L K A
Sbjct: 96 CAQHGEKLRLFCRKDMMVICWLCERSQEHRGHQTALIEEVDQEYKEKLQGALWKLMKKAK 155
Query: 1034 I--ELVERLKFKSSDPKVTRDQMKVFIQQEFKKVQKVIADEEQKTLHLV-----DIQEAM 1192
I E + L+ + D + +Q++FK ++ ++ +E + L + ++ E +
Sbjct: 156 ICDEWQDDLQLQRVDWENQIQINVENVQRQFKGLRDLLDSKENEELQKLKKEKKEVMEKL 215
Query: 1193 ---------ATAHVTEILADIQSHMDRLMTQMAQARKHLIPSMNQLSQGRGRRRRTQCAV 1345
T V ++++D++ H++ +M Q ++ + SQ ++
Sbjct: 216 EESENELEDQTELVRDLISDVEHHLELSTLEMLQGANCVL----RRSQSLSLQQPQTVPQ 271
Query: 1346 KRRRT 1360
KR+RT
Sbjct: 272 KRKRT 276
>ref|NP_001230845.1| tripartite motif-containing 34B [Mus musculus].
Length = 485
Score = 51.2 bits (121), Expect = 2e-06
Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 8/130 (6%)
Frame = +2
Query: 827 EIEMEAERVAKRK-CLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEELRS 1003
E++++ + KR C+ HG L +C+EDK++IC +C H+GH +EA E +
Sbjct: 82 EVKLKPDIGTKRDLCVHHGEKLLLFCKEDKKVICWVCERSQEHRGHHTFLWEEAVRECQE 141
Query: 1004 KDSGGLKAAMIELVERLKFKSSDPKVTRDQMKVFIQQE-------FKKVQKVIADEEQKT 1162
L E E+++ +D K R K +Q E F ++++++ EEQ+
Sbjct: 142 NLQKALTRLRKE-QEKVETLEADIKEDRLSWKRQVQTERQRIQTGFNQLRRILDKEEQRE 200
Query: 1163 LHLVDIQEAM 1192
L + +E M
Sbjct: 201 LKRLREEEQM 210
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,604,251
Number of extensions: 1033869
Number of successful extensions: 5038
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 4997
Number of HSP's successfully gapped: 25
Length of query: 457
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 352
Effective length of database: 12,463,779
Effective search space: 4387250208
Effective search space used: 4387250208
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012643
(1373 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060053.2| tripartite motif-containing protein 44 [Homo sa... 295 4e-81
Alignment gi|NP_976038.1| tripartite motif-containing protein 7 isoform 1... 59 8e-09
Alignment gi|NP_006065.2| E3 ubiquitin-protein ligase TRIM22 isoform 1 [H... 59 1e-08
Alignment gi|NP_001003819.1| tripartite motif-containing 6 and tripartite... 58 2e-08
Alignment gi|NP_001003818.1| tripartite motif-containing protein 6 isofor... 58 2e-08
Alignment gi|NP_477514.1| tripartite motif-containing protein 6 isoform 2... 58 2e-08
Alignment gi|NP_001186502.1| E3 ubiquitin-protein ligase TRIM22 isoform 2... 56 9e-08
Alignment gi|NP_569074.2| tripartite motif-containing protein 34 isoform ... 55 1e-07
Alignment gi|NP_001003827.1| tripartite motif-containing protein 34 isofo... 55 1e-07
Alignment gi|NP_067629.2| tripartite motif-containing protein 34 isoform ... 55 1e-07
>ref|NP_060053.2| tripartite motif-containing protein 44 [Homo sapiens].
Length = 344
Score = 295 bits (754), Expect(2) = 4e-81
Identities = 148/155 (95%), Positives = 152/155 (98%)
Frame = +2
Query: 818 FDPEIEMEAERVAKRKCLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEEL 997
FDPEIEMEAERVAKRKC DHGLDLSTYCQED+QLICVLCPVIGAHQGHQLSTLDEAFEEL
Sbjct: 163 FDPEIEMEAERVAKRKCPDHGLDLSTYCQEDRQLICVLCPVIGAHQGHQLSTLDEAFEEL 222
Query: 998 RSKDSGGLKAAMIELVERLKFKSSDPKVTRDQMKVFIQQEFKKVQKVIADEEQKTLHLVD 1177
RSKDSGGLKAAMIELVERLKFKSSDPKVTRDQMK+FIQQEFKKVQKVIADEEQK LHLVD
Sbjct: 223 RSKDSGGLKAAMIELVERLKFKSSDPKVTRDQMKMFIQQEFKKVQKVIADEEQKALHLVD 282
Query: 1178 IQEAMATAHVTEILADIQSHMDRLMTQMAQARKHL 1282
IQEAMATAHVTEILADIQSHMDRLMTQMAQA++ L
Sbjct: 283 IQEAMATAHVTEILADIQSHMDRLMTQMAQAKEQL 317
Score = 26.6 bits (57), Expect(2) = 4e-81
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +3
Query: 1308 KAEGDEEGPSVQ*REEE 1358
KAEGDEEGPS EE+
Sbjct: 327 KAEGDEEGPSGASEEED 343
Score = 146 bits (369), Expect = 4e-35
Identities = 66/86 (76%), Positives = 70/86 (81%)
Frame = +2
Query: 332 MASGGGAAFEELPHDGTCDECEPDEAPGAEEVCRECGFCYCHRHAEVHGQKFPRHHLAEY 511
MASG GAAFEELPHDGTCDECEPDEAPGAEEVCRECGFCYC RHAE H QKF HHLAEY
Sbjct: 1 MASGVGAAFEELPHDGTCDECEPDEAPGAEEVCRECGFCYCRRHAEAHRQKFLSHHLAEY 60
Query: 512 IHGAHQAWASGPQGGGTGEEEVEAQV 589
+HG+ QAW G G G+EE E +V
Sbjct: 61 VHGS-QAWTPPADGEGAGKEEAEVKV 85
>ref|NP_976038.1| tripartite motif-containing protein 7 isoform 1 [Homo sapiens].
Length = 511
Score = 59.3 bits (142), Expect = 8e-09
Identities = 39/156 (25%), Positives = 72/156 (46%)
Frame = +2
Query: 842 AERVAKRKCLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEELRSKDSGGL 1021
A R A +C HG YCQ+D + ICV+C H+ H + LDEA +E + L
Sbjct: 122 AARAAAARCGQHGEPFKLYCQDDGRAICVVCDRAREHREHAVLPLDEAVQEAKELLESRL 181
Query: 1022 KAAMIELVERLKFKSSDPKVTRDQMKVFIQQEFKKVQKVIADEEQKTLHLVDIQEAMATA 1201
+ EL + F+S++ K +++ +K ++ +KV A+ + LV+ QE
Sbjct: 182 RVLKKELEDCEVFRSTEKKESKELLKQMAAEQ----EKVGAEFQALRAFLVE-QEGRLLG 236
Query: 1202 HVTEILADIQSHMDRLMTQMAQARKHLIPSMNQLSQ 1309
+ E+ ++ + + Q+ L +Q+ +
Sbjct: 237 RLEELSREVAQKQNENLAQLGVEITQLSKLSSQIQE 272
>ref|NP_006065.2| E3 ubiquitin-protein ligase TRIM22 isoform 1 [Homo sapiens].
Length = 498
Score = 58.9 bits (141), Expect = 1e-08
Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 8/156 (5%)
Frame = +2
Query: 827 EIEMEAERVAKRK-CLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEELRS 1003
E++M + KR C HG L +C+ED ++IC +C + HQGHQ ++E +E +
Sbjct: 83 EVKMSPQEGQKRDVCEHHGKKLQIFCKEDGKVICWVCELSQEHQGHQTFRINEVVKECQE 142
Query: 1004 KDSGGLKAAMIELVERLKFKSSDPKVTRDQMKVFIQQEFKKVQK-------VIADEEQKT 1162
K L+ + E E K + D + R K +IQ E +K+ K ++ +EEQ+
Sbjct: 143 KLQVALQRLIKEDQEAEKLE-DDIRQERTAWKNYIQIERQKILKGFNEMRVILDNEEQRE 201
Query: 1163 LHLVDIQEAMATAHVTEILADIQSHMDRLMTQMAQA 1270
L ++ E +L ++ + D+L+ Q A
Sbjct: 202 LQKLEEGE-------VNVLDNLAAATDQLVQQRQDA 230
>ref|NP_001003819.1| tripartite motif-containing 6 and tripartite motif-containing 34
[Homo sapiens].
Length = 842
Score = 58.2 bits (139), Expect = 2e-08
Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 6/155 (3%)
Frame = +2
Query: 866 CLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEELRSKDSGGLKAAMIE-- 1039
C DHG L +CQED ++IC LC H+GH ++E +E + K LK E
Sbjct: 125 CADHGEKLQLFCQEDGKVICWLCERSQEHRGHHTFLVEEVAQEYQEKFQESLKKLKNEEQ 184
Query: 1040 ----LVERLKFKSSDPKVTRDQMKVFIQQEFKKVQKVIADEEQKTLHLVDIQEAMATAHV 1207
L ++ K + K + + IQ EF +++ ++ EQ+ L ++ +E +
Sbjct: 185 EAEKLTAFIREKKTSWKNQMEPERCRIQTEFNQLRNILDRVEQRELKKLEQEEKKGLRII 244
Query: 1208 TEILADIQSHMDRLMTQMAQARKHLIPSMNQLSQG 1312
E D + Q+ + LI + + QG
Sbjct: 245 EEAEND--------LVHQTQSLRELISDLERRCQG 271
Score = 55.5 bits (132), Expect = 1e-07
Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 7/127 (5%)
Frame = +2
Query: 827 EIEMEAERVAKRKCLDH-GLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEELRS 1003
E+++ + KR DH G L +C+ED+++IC LC H+GH +E F+E +
Sbjct: 437 EVKLSPDNGKKRDLCDHHGEKLLLFCKEDRKVICWLCERSQEHRGHHTVLTEEVFKECQE 496
Query: 1004 KDSGGLKAAMIELVERLKFKS------SDPKVTRDQMKVFIQQEFKKVQKVIADEEQKTL 1165
K LK E E K ++ + K + IQ EF +++ ++ +EEQ+ L
Sbjct: 497 KLQAVLKRLKKEEEEAEKLEADIREEKTSWKYQVQTERQRIQTEFDQLRSILNNEEQREL 556
Query: 1166 HLVDIQE 1186
++ +E
Sbjct: 557 QRLEEEE 563
>ref|NP_001003818.1| tripartite motif-containing protein 6 isoform 1 [Homo sapiens].
Length = 516
Score = 58.2 bits (139), Expect = 2e-08
Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 6/155 (3%)
Frame = +2
Query: 866 CLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEELRSKDSGGLKAAMIE-- 1039
C DHG L +CQED ++IC LC H+GH ++E +E + K LK E
Sbjct: 125 CADHGEKLQLFCQEDGKVICWLCERSQEHRGHHTFLVEEVAQEYQEKFQESLKKLKNEEQ 184
Query: 1040 ----LVERLKFKSSDPKVTRDQMKVFIQQEFKKVQKVIADEEQKTLHLVDIQEAMATAHV 1207
L ++ K + K + + IQ EF +++ ++ EQ+ L ++ +E +
Sbjct: 185 EAEKLTAFIREKKTSWKNQMEPERCRIQTEFNQLRNILDRVEQRELKKLEQEEKKGLRII 244
Query: 1208 TEILADIQSHMDRLMTQMAQARKHLIPSMNQLSQG 1312
E D + Q+ + LI + + QG
Sbjct: 245 EEAEND--------LVHQTQSLRELISDLERRCQG 271
>ref|NP_477514.1| tripartite motif-containing protein 6 isoform 2 [Homo sapiens].
Length = 488
Score = 58.2 bits (139), Expect = 2e-08
Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 6/155 (3%)
Frame = +2
Query: 866 CLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEELRSKDSGGLKAAMIE-- 1039
C DHG L +CQED ++IC LC H+GH ++E +E + K LK E
Sbjct: 97 CADHGEKLQLFCQEDGKVICWLCERSQEHRGHHTFLVEEVAQEYQEKFQESLKKLKNEEQ 156
Query: 1040 ----LVERLKFKSSDPKVTRDQMKVFIQQEFKKVQKVIADEEQKTLHLVDIQEAMATAHV 1207
L ++ K + K + + IQ EF +++ ++ EQ+ L ++ +E +
Sbjct: 157 EAEKLTAFIREKKTSWKNQMEPERCRIQTEFNQLRNILDRVEQRELKKLEQEEKKGLRII 216
Query: 1208 TEILADIQSHMDRLMTQMAQARKHLIPSMNQLSQG 1312
E D + Q+ + LI + + QG
Sbjct: 217 EEAEND--------LVHQTQSLRELISDLERRCQG 243
>ref|NP_001186502.1| E3 ubiquitin-protein ligase TRIM22 isoform 2 [Homo sapiens].
Length = 494
Score = 55.8 bits (133), Expect = 9e-08
Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 4/152 (2%)
Frame = +2
Query: 827 EIEMEAERVAKRK-CLDHGLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEELRS 1003
E++M + KR C HG L +C+ED ++IC +C + HQGHQ ++E +E +
Sbjct: 83 EVKMSPQEGQKRDVCEHHGKKLQIFCKEDGKVICWVCELSQEHQGHQTFRINEVVKECQE 142
Query: 1004 KDSGGLKAAMIELVERLKFKSSDPKVTRDQMKV---FIQQEFKKVQKVIADEEQKTLHLV 1174
K L+ + E E K + D + R K+ I + F +++ ++ +EEQ+ L +
Sbjct: 143 KLQVALQRLIKEDQEAEKLE-DDIRQERTAWKIERQKILKGFNEMRVILDNEEQRELQKL 201
Query: 1175 DIQEAMATAHVTEILADIQSHMDRLMTQMAQA 1270
+ E +L ++ + D+L+ Q A
Sbjct: 202 EEGE-------VNVLDNLAAATDQLVQQRQDA 226
>ref|NP_569074.2| tripartite motif-containing protein 34 isoform 3 [Homo sapiens].
Length = 270
Score = 55.5 bits (132), Expect = 1e-07
Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 7/127 (5%)
Frame = +2
Query: 827 EIEMEAERVAKRKCLDH-GLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEELRS 1003
E+++ + KR DH G L +C+ED+++IC LC H+GH +E F+E +
Sbjct: 83 EVKLSPDNGKKRDLCDHHGEKLLLFCKEDRKVICWLCERSQEHRGHHTVLTEEVFKECQE 142
Query: 1004 KDSGGLKAAMIELVERLKFKS------SDPKVTRDQMKVFIQQEFKKVQKVIADEEQKTL 1165
K LK E E K ++ + K + IQ EF +++ ++ +EEQ+ L
Sbjct: 143 KLQAVLKRLKKEEEEAEKLEADIREEKTSWKYQVQTERQRIQTEFDQLRSILNNEEQREL 202
Query: 1166 HLVDIQE 1186
++ +E
Sbjct: 203 QRLEEEE 209
>ref|NP_001003827.1| tripartite motif-containing protein 34 isoform 1 [Homo sapiens].
Length = 488
Score = 55.5 bits (132), Expect = 1e-07
Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 7/127 (5%)
Frame = +2
Query: 827 EIEMEAERVAKRKCLDH-GLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEELRS 1003
E+++ + KR DH G L +C+ED+++IC LC H+GH +E F+E +
Sbjct: 83 EVKLSPDNGKKRDLCDHHGEKLLLFCKEDRKVICWLCERSQEHRGHHTVLTEEVFKECQE 142
Query: 1004 KDSGGLKAAMIELVERLKFKS------SDPKVTRDQMKVFIQQEFKKVQKVIADEEQKTL 1165
K LK E E K ++ + K + IQ EF +++ ++ +EEQ+ L
Sbjct: 143 KLQAVLKRLKKEEEEAEKLEADIREEKTSWKYQVQTERQRIQTEFDQLRSILNNEEQREL 202
Query: 1166 HLVDIQE 1186
++ +E
Sbjct: 203 QRLEEEE 209
>ref|NP_067629.2| tripartite motif-containing protein 34 isoform 1 [Homo sapiens].
Length = 488
Score = 55.5 bits (132), Expect = 1e-07
Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 7/127 (5%)
Frame = +2
Query: 827 EIEMEAERVAKRKCLDH-GLDLSTYCQEDKQLICVLCPVIGAHQGHQLSTLDEAFEELRS 1003
E+++ + KR DH G L +C+ED+++IC LC H+GH +E F+E +
Sbjct: 83 EVKLSPDNGKKRDLCDHHGEKLLLFCKEDRKVICWLCERSQEHRGHHTVLTEEVFKECQE 142
Query: 1004 KDSGGLKAAMIELVERLKFKS------SDPKVTRDQMKVFIQQEFKKVQKVIADEEQKTL 1165
K LK E E K ++ + K + IQ EF +++ ++ +EEQ+ L
Sbjct: 143 KLQAVLKRLKKEEEEAEKLEADIREEKTSWKYQVQTERQRIQTEFDQLRSILNNEEQREL 202
Query: 1166 HLVDIQE 1186
++ +E
Sbjct: 203 QRLEEEE 209
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,885,127
Number of extensions: 1245983
Number of successful extensions: 6489
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 6444
Number of HSP's successfully gapped: 29
Length of query: 457
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 351
Effective length of database: 14,802,980
Effective search space: 5195845980
Effective search space used: 5195845980
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012643
(1373 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 948 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 948 bits (478), Expect = 0.0
Identities = 493/498 (98%)
Strand = Plus / Minus
Query: 91 aagtgccccggcagctgcaggaagctcagagggtgcctagccgtggagccggcgagaagg 150
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 27737786 aagtgccccggcagctgcaggaagctcagagggtgcctagccgtggagccggcgaggagg 27737727
Query: 151 cggggtgtgtgctcctgggcctggcgggggctgtaggagtaggtggcagcggggctgtgg 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27737726 cggggtgtgtgctcctgggcctggcgggggctgtaggagtaggtggcagcggggctgtgg 27737667
Query: 211 aacgcggtgcggcagctgcccgggacggctcccgggtggggaggaagacgcgaggaggcc 270
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 27737666 aacgcggtgcggcagctgcccgggacggctcccgggtggggaggaagacgcaaggaggcc 27737607
Query: 271 gcgccgaggccaggcggccagctcggtgggcttgagccccgggccgctgcacggccccca 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27737606 gcgccgaggccaggcggccagctcggtgggcttgagccccgggccgctgcacggccccca 27737547
Query: 331 catggcctccggagggggcgcggccttcgaggagctgccgcacgatggcacgtgtgatga 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27737546 catggcctccggagggggcgcggccttcgaggagctgccgcacgatggcacgtgtgatga 27737487
Query: 391 gtgcgagcccgacgaggctccgggggccgaggaagtgtgccgagaatgtggcttctgcta 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27737486 gtgcgagcccgacgaggctccgggggccgaggaagtgtgccgagaatgtggcttctgcta 27737427
Query: 451 ctgccaccgtcatgcggaggtgcacgggcagaagttcccccggcaccatctggccgagta 510
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 27737426 ctgccaccgtcacgcggaggtgcacgggcagaagttcccccggcaccacctggccgagta 27737367
Query: 511 catccacggtgctcaccaggcctgggcctcgggacctcaagggggcggcacaggggagga 570
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27737366 cgtccacggtgctcaccaggcctgggcctcgggacctcaagggggcggcacaggggagga 27737307
Query: 571 agaagtcgaggcccaggt 588
||||||||||||||||||
Sbjct: 27737306 agaagtcgaggcccaggt 27737289
Score = 400 bits (202), Expect = e-109
Identities = 236/242 (97%), Gaps = 4/242 (1%)
Strand = Plus / Minus
Query: 1079 gtaacccgggaccagatgaaggtgtttatacagcaggaatttaagaaagttcaaaaagtg 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27693401 gtaacccgggaccagatgaaggtgtttatacagcaggaatttaagaaagttcaaaaagtg 27693342
Query: 1139 attgctgatgaggagcagaagacccttcatctggtggacatccaggaagcaatggccaca 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27693341 attgctgatgaggagcagaagacccttcatctggtggacatccaggaagcaatggccaca 27693282
Query: 1199 gcccatgtgactgagatcctggcagatatccaatcccatatggataggttgatgactcag 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27693281 gcccatgtgactgagatcctggcagatatccaatcccatatggataggttgatgactcag 27693222
Query: 1259 atggcccaagcc-aggaaacacttgataccctct-atgaatcagctgagcc-aaggcaga 1315
|||||||||||| ||||| |||||||| ||||| |||||||||||||||| ||||||||
Sbjct: 27693221 atggcccaagccaaggaacaacttgata-cctctaatgaatcagctgagccaaaggcaga 27693163
Query: 1316 gg 1317
||
Sbjct: 27693162 gg 27693161
Score = 363 bits (183), Expect = 2e-97
Identities = 183/183 (100%)
Strand = Plus / Minus
Query: 818 tttgatccggaaatagaaatggaagcagagcgagtggccaagaggaagtgtctggaccat 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27737059 tttgatccggaaatagaaatggaagcagagcgagtggccaagaggaagtgtctggaccat 27737000
Query: 878 gggctcgatttgagtacctattgccaggaagataagcagctcatctgtgtcctgtgccca 937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27736999 gggctcgatttgagtacctattgccaggaagataagcagctcatctgtgtcctgtgccca 27736940
Query: 938 gtcattggggctcaccagggtcatcagctttccaccctagatgaagccttcgaagaacta 997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27736939 gtcattggggctcaccagggtcatcagctttccaccctagatgaagccttcgaagaacta 27736880
Query: 998 aga 1000
|||
Sbjct: 27736879 aga 27736877
Score = 163 bits (82), Expect = 3e-37
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 1001 agcaaagactcaggcggattgaaggcagccatgatagagttggtggaaaggttaaagttc 1060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27715106 agcaaagactcaggcggattgaaggcagccatgatagagttggtggaaaggttaaagttc 27715047
Query: 1061 aagagctcagaccctaaagtaa 1082
||||||||||||||||||||||
Sbjct: 27715046 aagagctcagaccctaaagtaa 27715025
Score = 67.9 bits (34), Expect = 1e-08
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 3 atcgtgccgtgttctcgccagggcagcggggagggcga 40
|||| |||||||||||||||||||||||||||||||||
Sbjct: 27737874 atcgagccgtgttctcgccagggcagcggggagggcga 27737837
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,657,169
Number of extensions: 141
Number of successful extensions: 141
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 5
Length of query: 1373
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1352
Effective length of database: 2,808,413,156
Effective search space: 3796974586912
Effective search space used: 3796974586912
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)