Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012649
(1095 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_544561.2| PREDICTED: similar to dehydrogenase/reductase (... 474 e-134
Alignment gi|XP_535646.2| PREDICTED: similar to alcohol dehydrogenase PAN... 169 6e-42
Alignment gi|XP_850000.1| PREDICTED: similar to hydroxysteroid (17-beta) ... 169 6e-42
Alignment gi|XP_860039.1| PREDICTED: similar to retinol dehydrogenase 10 ... 158 1e-38
Alignment gi|XP_544970.2| PREDICTED: similar to dehydrogenase/reductase (... 157 1e-38
Alignment gi|XP_544127.2| PREDICTED: similar to retinol dehydrogenase 10 ... 157 2e-38
Alignment gi|XP_535080.2| PREDICTED: similar to epidermal retinal dehydro... 156 4e-38
Alignment gi|XP_860108.1| PREDICTED: similar to retinol dehydrogenase 10 ... 152 5e-37
Alignment gi|XP_849875.1| PREDICTED: similar to retinol dehydrogenase 10 ... 150 3e-36
Alignment gi|XP_860425.1| PREDICTED: similar to hydroxysteroid (17-beta) ... 120 3e-27
>ref|XP_544561.2| PREDICTED: similar to dehydrogenase/reductase (SDR family) member 3
[Canis familiaris].
Length = 302
Score = 474 bits (1220), Expect = e-134
Identities = 235/240 (97%), Positives = 237/240 (98%)
Frame = +1
Query: 376 MVWKWLGALVVFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAE 555
MVWKWLGALV FPLQ+IYLV KAA+GLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAE
Sbjct: 1 MVWKWLGALVGFPLQIIYLVAKAAVGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAE 60
Query: 556 RGARKIVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITIL 735
RGARKIVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITIL
Sbjct: 61 RGARKIVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITIL 120
Query: 736 VNNAAVVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALS 915
VNNAAVVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALS
Sbjct: 121 VNNAAVVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALS 180
Query: 916 AIPGAIDYCTSKASAFAFMESLTLGLLDCPGVSATTVLPFHTSTEMFQGMRVRVPNLFPP 1095
AIPGAIDYCTSKASAFAFMESLTLGLLDCPGVSATTVLPFHTSTEMFQGMRVR PNLFPP
Sbjct: 181 AIPGAIDYCTSKASAFAFMESLTLGLLDCPGVSATTVLPFHTSTEMFQGMRVRFPNLFPP 240
>ref|XP_535646.2| PREDICTED: similar to alcohol dehydrogenase PAN1B-like isoform 1
[Canis familiaris].
Length = 271
Score = 169 bits (427), Expect = 6e-42
Identities = 90/218 (41%), Positives = 134/218 (61%), Gaps = 2/218 (0%)
Frame = +1
Query: 400 LVVFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVL 579
L++ L +IY ++A + + P K + ++ E VLITG G GIGR A EFA++ +R +VL
Sbjct: 7 LLLLLLTIIYSYLEALVKVFFPRKRKSVAGEIVLITGAGHGIGRWTAYEFAKQKSR-LVL 65
Query: 580 WGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAAVVH 759
W + ++ET E R++G H F+ D GNRE++Y + K V+++VGD+TILVNNA V+
Sbjct: 66 WDINKHGVEETAAECRKLGATVHTFVVDCGNREDIYNSVKQVKKEVGDVTILVNNAGTVY 125
Query: 760 GKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAIDY 939
L+ + D+ + K+ IN LG FW TKA LP M++ +GHIV + SV IP I Y
Sbjct: 126 PADLLSTKDEEITKTFEINILGHFWITKALLPSMIKRNHGHIVTVASVCGHGVIPYLIPY 185
Query: 940 CTSKASAFAFMESLTLGL--LDCPGVSATTVLPFHTST 1047
C+SK +A F +LTL L L G+ + + P +T
Sbjct: 186 CSSKFAAVGFHRALTLELQTLGITGIKTSCLCPVFVNT 223
>ref|XP_850000.1| PREDICTED: similar to hydroxysteroid (17-beta) dehydrogenase 13
isoform 2 [Canis familiaris].
Length = 300
Score = 169 bits (427), Expect = 6e-42
Identities = 90/218 (41%), Positives = 134/218 (61%), Gaps = 2/218 (0%)
Frame = +1
Query: 400 LVVFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVL 579
L++ L +IY ++A + + P K + ++ E VLITG G GIGR A EFA++ +R +VL
Sbjct: 7 LLLLLLTIIYSYLEALVKVFFPRKRKSVAGEIVLITGAGHGIGRWTAYEFAKQKSR-LVL 65
Query: 580 WGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAAVVH 759
W + ++ET E R++G H F+ D GNRE++Y + K V+++VGD+TILVNNA V+
Sbjct: 66 WDINKHGVEETAAECRKLGATVHTFVVDCGNREDIYNSVKQVKKEVGDVTILVNNAGTVY 125
Query: 760 GKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAIDY 939
L+ + D+ + K+ IN LG FW TKA LP M++ +GHIV + SV IP I Y
Sbjct: 126 PADLLSTKDEEITKTFEINILGHFWITKALLPSMIKRNHGHIVTVASVCGHGVIPYLIPY 185
Query: 940 CTSKASAFAFMESLTLGL--LDCPGVSATTVLPFHTST 1047
C+SK +A F +LTL L L G+ + + P +T
Sbjct: 186 CSSKFAAVGFHRALTLELQTLGITGIKTSCLCPVFVNT 223
>ref|XP_860039.1| PREDICTED: similar to retinol dehydrogenase 10 isoform 3 [Canis
familiaris].
Length = 321
Score = 158 bits (399), Expect = 1e-38
Identities = 92/239 (38%), Positives = 135/239 (56%), Gaps = 9/239 (3%)
Frame = +1
Query: 406 VFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVLWG 585
V ++++ V AA ++ K + ++ + LITG G G+GR A EFA R A +VLW
Sbjct: 9 VVTFKVLWAFVLAAARWLVRPKEKSVAGQVCLITGAGSGLGRLFALEFARRRAL-LVLWD 67
Query: 586 RTEKCLKETTEEIRQM-----GTECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAA 750
+ +ET +R + + + CDVG RE VY TA+ VR++VG++++LVNNA
Sbjct: 68 INTQSNEETAGMVRHIYRDLEAADVFTYTCDVGKRENVYLTAERVRKEVGEVSVLVNNAG 127
Query: 751 VVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGA 930
VV G L++ D+ + ++ +N FWTTKAFLP MLE+ +GHIV + S L L + G
Sbjct: 128 VVSGHHLLECPDELIERTMMVNCHAHFWTTKAFLPTMLEINHGHIVTVASSLGLFSTAGV 187
Query: 931 IDYCTSKASAFAFMESLT--LGLLDCPGVSATTVLPFHTSTEMFQGMRVR--VPNLFPP 1095
DYC SK F ESL+ L + G+ T V P+ T MF+G R+R + PP
Sbjct: 188 EDYCASKFGVVGFHESLSHELKAAEKDGIKTTLVCPYLVDTGMFRGCRIRKEIEPFLPP 246
>ref|XP_544970.2| PREDICTED: similar to dehydrogenase/reductase (SDR family) member 8
[Canis familiaris].
Length = 300
Score = 157 bits (398), Expect = 1e-38
Identities = 88/238 (36%), Positives = 139/238 (58%), Gaps = 2/238 (0%)
Frame = +1
Query: 388 WLGALVVFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGAR 567
+L L PL +I+ +++ + L +P K + ++ E VLITG G GIGR A EFA+ +
Sbjct: 4 FLQCLQFLPLLIIF-TLESLLKLFIPKKRKSVTGEIVLITGAGHGIGRLTAYEFAKLKS- 61
Query: 568 KIVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITILVNNA 747
K+VLW + +++T E R++G + H F+ D NRE++Y +A V+ +VGD++ILVNNA
Sbjct: 62 KLVLWDINKHGIEDTAAECRRLGAKVHAFVVDCSNREDIYGSATKVKAEVGDVSILVNNA 121
Query: 748 AVVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPG 927
VV+ L + D + K+ +N L FWTTKAFLP M++ +GHIV + S + +P
Sbjct: 122 GVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPVMMKNNHGHIVTVASAAGHTGVPF 181
Query: 928 AIDYCTSKASAFAFMESLT--LGLLDCPGVSATTVLPFHTSTEMFQGMRVRVPNLFPP 1095
+ YC+SK +A F ++LT L L+ GV T + P +T + + + P
Sbjct: 182 LLAYCSSKFAAVGFHKALTEELAALERTGVKTTCLCPNFINTGFIKNASTALGPILEP 239
>ref|XP_544127.2| PREDICTED: similar to retinol dehydrogenase 10 isoform 1 [Canis
familiaris].
Length = 319
Score = 157 bits (396), Expect = 2e-38
Identities = 92/237 (38%), Positives = 134/237 (56%), Gaps = 7/237 (2%)
Frame = +1
Query: 406 VFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVLWG 585
V ++++ V AA ++ K + ++ + LITG G G+GR A EFA R A +VLW
Sbjct: 9 VVTFKVLWAFVLAAARWLVRPKEKSVAGQVCLITGAGSGLGRLFALEFARRRAL-LVLWD 67
Query: 586 RTEKCLKETT---EEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAAVV 756
+ +ET E + + + CDVG RE VY TA+ VR++VG++++LVNNA VV
Sbjct: 68 INTQSNEETAGMEEILPHCNLQVFTYTCDVGKRENVYLTAERVRKEVGEVSVLVNNAGVV 127
Query: 757 HGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAID 936
G L++ D+ + ++ +N FWTTKAFLP MLE+ +GHIV + S L L + G D
Sbjct: 128 SGHHLLECPDELIERTMMVNCHAHFWTTKAFLPTMLEINHGHIVTVASSLGLFSTAGVED 187
Query: 937 YCTSKASAFAFMESLT--LGLLDCPGVSATTVLPFHTSTEMFQGMRVR--VPNLFPP 1095
YC SK F ESL+ L + G+ T V P+ T MF+G R+R + PP
Sbjct: 188 YCASKFGVVGFHESLSHELKAAEKDGIKTTLVCPYLVDTGMFRGCRIRKEIEPFLPP 244
>ref|XP_535080.2| PREDICTED: similar to epidermal retinal dehydrogenase 2 [Canis
familiaris].
Length = 309
Score = 156 bits (394), Expect = 4e-38
Identities = 85/234 (36%), Positives = 135/234 (57%), Gaps = 3/234 (1%)
Frame = +1
Query: 400 LVVFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVL 579
LVVF + + +++ + ++P ++++ E VLITG G G+GR LA FA G+ +VL
Sbjct: 11 LVVFLGKSVIAFLESMVFTIIPKPRKNVAGEIVLITGAGSGLGRLLALRFARLGS-VLVL 69
Query: 580 WGRTEKCLKETTEEIRQMG-TECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAAVV 756
W ++ ++T R+ G T + + CD RE++Y+ A+ V+++VGDI+IL+NNA +V
Sbjct: 70 WDINKEGNEDTCRMAREAGATRVYAYTCDCSQREDIYRVAEQVKKEVGDISILINNAGIV 129
Query: 757 HGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAID 936
GK+ +D D+ + K+ +N WT K+FLP M+ +GH+VC++S L I D
Sbjct: 130 TGKNFLDCPDELMEKALDVNFKAHLWTCKSFLPAMIANNHGHLVCISSSAGLVGISKLAD 189
Query: 937 YCTSKASAFAFMESLTLGLL--DCPGVSATTVLPFHTSTEMFQGMRVRVPNLFP 1092
YC SK +A F ES+ + G+ T V PF +T MF+G P L P
Sbjct: 190 YCASKFAALGFAESIFAETVVQKLNGIKTTIVCPFFINTGMFEGCSTVRPFLLP 243
>ref|XP_860108.1| PREDICTED: similar to retinol dehydrogenase 10 isoform 4 [Canis
familiaris].
Length = 336
Score = 152 bits (384), Expect = 5e-37
Identities = 94/254 (37%), Positives = 137/254 (53%), Gaps = 24/254 (9%)
Frame = +1
Query: 406 VFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVLWG 585
V ++++ V AA ++ K + ++ + LITG G G+GR A EFA R A +VLW
Sbjct: 9 VVTFKVLWAFVLAAARWLVRPKEKSVAGQVCLITGAGSGLGRLFALEFARRRAL-LVLWD 67
Query: 586 RTEKCLKETTEEIR----------------QMGTECHY----FICDVGNREEVYQTAKAV 705
+ +ET +R Q+ C+ + CDVG RE VY TA+ V
Sbjct: 68 INTQSNEETAGMVRHIYRDLEPSPGGPDPRQILPHCNLQVFTYTCDVGKRENVYLTAERV 127
Query: 706 REKVGDITILVNNAAVVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHI 885
R++VG++++LVNNA VV G L++ D+ + ++ +N FWTTKAFLP MLE+ +GHI
Sbjct: 128 RKEVGEVSVLVNNAGVVSGHHLLECPDELIERTMMVNCHAHFWTTKAFLPTMLEINHGHI 187
Query: 886 VCLNSVLALSAIPGAIDYCTSKASAFAFMESLT--LGLLDCPGVSATTVLPFHTSTEMFQ 1059
V + S L L + G DYC SK F ESL+ L + G+ T V P+ T MF+
Sbjct: 188 VTVASSLGLFSTAGVEDYCASKFGVVGFHESLSHELKAAEKDGIKTTLVCPYLVDTGMFR 247
Query: 1060 GMRVR--VPNLFPP 1095
G R+R + PP
Sbjct: 248 GCRIRKEIEPFLPP 261
>ref|XP_849875.1| PREDICTED: similar to retinol dehydrogenase 10 isoform 2 [Canis
familiaris].
Length = 341
Score = 150 bits (378), Expect = 3e-36
Identities = 92/259 (35%), Positives = 135/259 (52%), Gaps = 29/259 (11%)
Frame = +1
Query: 406 VFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVLWG 585
V ++++ V AA ++ K + ++ + LITG G G+GR A EFA R A +VLW
Sbjct: 9 VVTFKVLWAFVLAAARWLVRPKEKSVAGQVCLITGAGSGLGRLFALEFARRRAL-LVLWD 67
Query: 586 RTEKCLKETTEEIRQM-------------------------GTECHYFICDVGNREEVYQ 690
+ +ET +R + + + CDVG RE VY
Sbjct: 68 INTQSNEETAGMVRHIYRDLEAADAAALQAGNGEEEILPHCNLQVFTYTCDVGKRENVYL 127
Query: 691 TAKAVREKVGDITILVNNAAVVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLEL 870
TA+ VR++VG++++LVNNA VV G L++ D+ + ++ +N FWTTKAFLP MLE+
Sbjct: 128 TAERVRKEVGEVSVLVNNAGVVSGHHLLECPDELIERTMMVNCHAHFWTTKAFLPTMLEI 187
Query: 871 QNGHIVCLNSVLALSAIPGAIDYCTSKASAFAFMESLT--LGLLDCPGVSATTVLPFHTS 1044
+GHIV + S L L + G DYC SK F ESL+ L + G+ T V P+
Sbjct: 188 NHGHIVTVASSLGLFSTAGVEDYCASKFGVVGFHESLSHELKAAEKDGIKTTLVCPYLVD 247
Query: 1045 TEMFQGMRVR--VPNLFPP 1095
T MF+G R+R + PP
Sbjct: 248 TGMFRGCRIRKEIEPFLPP 266
>ref|XP_860425.1| PREDICTED: similar to hydroxysteroid (17-beta) dehydrogenase 13
isoform 3 [Canis familiaris].
Length = 264
Score = 120 bits (300), Expect = 3e-27
Identities = 77/218 (35%), Positives = 113/218 (51%), Gaps = 2/218 (0%)
Frame = +1
Query: 400 LVVFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVL 579
L++ L +IY ++A + + P K + ++ E VLITG G GIGR A EFA++ +R +VL
Sbjct: 7 LLLLLLTIIYSYLEALVKVFFPRKRKSVAGEIVLITGAGHGIGRWTAYEFAKQKSR-LVL 65
Query: 580 WGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAAVVH 759
W D+ V+++VGD+TILVNNA V+
Sbjct: 66 W--------------------------DINK----------VKKEVGDVTILVNNAGTVY 89
Query: 760 GKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAIDY 939
L+ + D+ + K+ IN LG FW TKA LP M++ +GHIV + SV IP I Y
Sbjct: 90 PADLLSTKDEEITKTFEINILGHFWITKALLPSMIKRNHGHIVTVASVCGHGVIPYLIPY 149
Query: 940 CTSKASAFAFMESLTLGL--LDCPGVSATTVLPFHTST 1047
C+SK +A F +LTL L L G+ + + P +T
Sbjct: 150 CSSKFAAVGFHRALTLELQTLGITGIKTSCLCPVFVNT 187
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,081,954
Number of extensions: 1571880
Number of successful extensions: 8862
Number of sequences better than 1.0e-05: 48
Number of HSP's gapped: 8612
Number of HSP's successfully gapped: 49
Length of query: 365
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 261
Effective length of database: 15,407,560
Effective search space: 4021373160
Effective search space used: 4021373160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012649
(1095 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776605.2| short-chain dehydrogenase/reductase 3 [Bos taur... 472 e-133
Alignment gi|XP_002683810.1| PREDICTED: dehydrogenase/reductase (SDR fami... 339 3e-93
Alignment gi|NP_001039751.1| estradiol 17-beta-dehydrogenase 11 [Bos taur... 165 7e-41
Alignment gi|NP_001040081.1| 17-beta-hydroxysteroid dehydrogenase 13 [Bos... 164 2e-40
Alignment gi|NP_001192862.1| epidermal retinol dehydrogenase 2 [Bos tauru... 163 2e-40
Alignment gi|XP_002692702.1| PREDICTED: short chain dehydrogenase/reducta... 163 2e-40
Alignment gi|NP_001093177.1| short-chain dehydrogenase/reductase family 1... 161 8e-40
Alignment gi|NP_777159.1| retinol dehydrogenase 10 [Bos taurus]. 150 2e-36
Alignment gi|XP_002683809.1| PREDICTED: dehydrogenase/reductase (SDR fami... 124 1e-28
Alignment gi|NP_001030420.1| dehydrogenase/reductase SDR family member 7B... 84 2e-16
>ref|NP_776605.2| short-chain dehydrogenase/reductase 3 [Bos taurus].
Length = 302
Score = 472 bits (1214), Expect = e-133
Identities = 236/240 (98%), Positives = 237/240 (98%)
Frame = +1
Query: 376 MVWKWLGALVVFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAE 555
MVWK LGALVVFPLQMIYLVVKAA+GLVLPAKLRDLSRENVLITGGGRGIGRQLA EFAE
Sbjct: 1 MVWKRLGALVVFPLQMIYLVVKAAVGLVLPAKLRDLSRENVLITGGGRGIGRQLALEFAE 60
Query: 556 RGARKIVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITIL 735
RGARKIVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITIL
Sbjct: 61 RGARKIVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITIL 120
Query: 736 VNNAAVVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALS 915
VNNAAVVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALS
Sbjct: 121 VNNAAVVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALS 180
Query: 916 AIPGAIDYCTSKASAFAFMESLTLGLLDCPGVSATTVLPFHTSTEMFQGMRVRVPNLFPP 1095
AIPGAIDYCTSKASAFAFMESLTLGLLDCPGVSATTVLPFHTSTEMFQGMRVR PNLFPP
Sbjct: 181 AIPGAIDYCTSKASAFAFMESLTLGLLDCPGVSATTVLPFHTSTEMFQGMRVRFPNLFPP 240
>ref|XP_002683810.1| PREDICTED: dehydrogenase/reductase (SDR family) member 3-like,
partial [Bos taurus].
Length = 171
Score = 339 bits (869), Expect = 3e-93
Identities = 167/167 (100%), Positives = 167/167 (100%)
Frame = +1
Query: 571 IVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAA 750
IVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAA
Sbjct: 5 IVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAA 64
Query: 751 VVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGA 930
VVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGA
Sbjct: 65 VVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGA 124
Query: 931 IDYCTSKASAFAFMESLTLGLLDCPGVSATTVLPFHTSTEMFQGMRV 1071
IDYCTSKASAFAFMESLTLGLLDCPGVSATTVLPFHTSTEMFQGMRV
Sbjct: 125 IDYCTSKASAFAFMESLTLGLLDCPGVSATTVLPFHTSTEMFQGMRV 171
>ref|NP_001039751.1| estradiol 17-beta-dehydrogenase 11 [Bos taurus].
Length = 316
Score = 165 bits (417), Expect = 7e-41
Identities = 89/231 (38%), Positives = 140/231 (60%), Gaps = 2/231 (0%)
Frame = +1
Query: 361 SAARRMVWKWLGALVVFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLA 540
S ++ + +L + ++ P ++ +V++ + L +P K + ++ E VLITG G GIGRQ A
Sbjct: 11 SQQQKRIQFFLASFLLLPFLLV-CIVESLLKLFIPKKRKSVTGEIVLITGAGHGIGRQTA 69
Query: 541 REFAERGARKIVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVG 720
EFA+ K+VLW + L+ET E +++G + H F+ D NRE++Y +AK V+ +VG
Sbjct: 70 YEFAKLKC-KLVLWDINKHGLEETATECKRLGAKAHTFVVDCSNREDIYSSAKKVKAEVG 128
Query: 721 DITILVNNAAVVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNS 900
D++ILVNNA VV+ L + D + K+ +N L FWTTKAFLP M++ +GHIV + S
Sbjct: 129 DVSILVNNAGVVYTSDLFATQDPQIEKTFEVNILAHFWTTKAFLPEMMKNNHGHIVTVAS 188
Query: 901 VLALSAIPGAIDYCTSKASAFAFMESLT--LGLLDCPGVSATTVLPFHTST 1047
+ +P + YC+SK +A F ++LT L L GV T + P +T
Sbjct: 189 AAGHTGVPFLLAYCSSKFAAVGFHKALTEELSALKRTGVKTTCLCPNFINT 239
>ref|NP_001040081.1| 17-beta-hydroxysteroid dehydrogenase 13 [Bos taurus].
Length = 300
Score = 164 bits (414), Expect = 2e-40
Identities = 86/228 (37%), Positives = 135/228 (59%), Gaps = 2/228 (0%)
Frame = +1
Query: 400 LVVFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVL 579
L++ L +IY +++ + + +P + + ++ E VLITG G GIGRQ A EFA+R +R +VL
Sbjct: 7 LLLLLLIIIYSYLESLVKVFIPRRRKSVAGEIVLITGAGHGIGRQTAYEFAKRKSR-LVL 65
Query: 580 WGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAAVVH 759
W + ++ET E R++G H F+ D NREE+Y + V+++VGD+TI+VNNA ++
Sbjct: 66 WDINKHGVEETAAECRKLGATTHVFVVDCSNREEIYSSVNQVKKEVGDVTIVVNNAGAIY 125
Query: 760 GKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAIDY 939
L+ + D+ + K+ +N LG FW TKA LP M+ +GHIV + SV IP I Y
Sbjct: 126 PADLLSTKDEEITKTFEVNILGHFWITKALLPSMIRRNHGHIVTVASVCGHGVIPYLIPY 185
Query: 940 CTSKASAFAFMESLT--LGLLDCPGVSATTVLPFHTSTEMFQGMRVRV 1077
C+SK +A F +LT L L G+ + + P +T + R+
Sbjct: 186 CSSKFAAVGFHRALTSELEALGKTGIKTSCLCPVFVNTGFTKNPSTRI 233
>ref|NP_001192862.1| epidermal retinol dehydrogenase 2 [Bos taurus].
Length = 309
Score = 163 bits (413), Expect = 2e-40
Identities = 87/234 (37%), Positives = 137/234 (58%), Gaps = 3/234 (1%)
Frame = +1
Query: 400 LVVFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVL 579
L++F + + +V+A + +++P ++++ E VLITG G G+GR LA +FA+ G+ +VL
Sbjct: 11 LLIFLGKSVLALVEAVVFVIIPKPRKNVAGEIVLITGAGSGLGRLLALKFAQLGS-VLVL 69
Query: 580 WGRTEKCLKETTEEIRQMG-TECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAAVV 756
W +++ +ET + + G T + + CD +EE+Y+ A V+++VGD +IL+NNA +V
Sbjct: 70 WDISQESNEETCKMAVEAGATRVYAYTCDCSRKEEIYRVANQVKKEVGDASILINNAGIV 129
Query: 757 HGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAID 936
G+ MD D+ + KS +N WT KAFLP M+ GH+VC++S L + G D
Sbjct: 130 TGRKFMDCPDELIEKSLDVNFKSHIWTYKAFLPAMIANNRGHLVCISSSAGLIGMNGLAD 189
Query: 937 YCTSKASAFAFMESLTLGLL--DCPGVSATTVLPFHTSTEMFQGMRVRVPNLFP 1092
YC SK +A+ F ES+ L G+ T V PF T MF G P+L P
Sbjct: 190 YCASKFAAYGFAESIFLESFTKGQNGIKTTIVCPFFIKTGMFDGCTTGCPSLLP 243
>ref|XP_002692702.1| PREDICTED: short chain dehydrogenase/reductase family 16C, member
5-like [Bos taurus].
Length = 309
Score = 163 bits (413), Expect = 2e-40
Identities = 87/234 (37%), Positives = 137/234 (58%), Gaps = 3/234 (1%)
Frame = +1
Query: 400 LVVFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVL 579
L++F + + +V+A + +++P ++++ E VLITG G G+GR LA +FA+ G+ +VL
Sbjct: 11 LLIFLGKSVLALVEAVVFVIIPKPRKNVAGEIVLITGAGSGLGRLLALKFAQLGS-VLVL 69
Query: 580 WGRTEKCLKETTEEIRQMG-TECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAAVV 756
W +++ +ET + + G T + + CD +EE+Y+ A V+++VGD +IL+NNA +V
Sbjct: 70 WDISQESNEETCKMAVEAGATRVYAYTCDCSRKEEIYRVANQVKKEVGDASILINNAGIV 129
Query: 757 HGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAID 936
G+ MD D+ + KS +N WT KAFLP M+ GH+VC++S L + G D
Sbjct: 130 TGRKFMDCPDELIEKSLDVNFKSHIWTYKAFLPAMIANNRGHLVCISSSAGLIGMNGLAD 189
Query: 937 YCTSKASAFAFMESLTLGLL--DCPGVSATTVLPFHTSTEMFQGMRVRVPNLFP 1092
YC SK +A+ F ES+ L G+ T V PF T MF G P+L P
Sbjct: 190 YCASKFAAYGFAESIFLESFTKGQNGIKTTIVCPFFIKTGMFDGCTTGCPSLLP 243
>ref|NP_001093177.1| short-chain dehydrogenase/reductase family 16C member 6 [Bos taurus].
Length = 316
Score = 161 bits (408), Expect = 8e-40
Identities = 89/232 (38%), Positives = 136/232 (58%), Gaps = 3/232 (1%)
Frame = +1
Query: 406 VFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVLWG 585
+F + +Y +++ ++P K +D++ E VLITG G+GR LA +FA GA +VLW
Sbjct: 9 IFLGKFLYYFLESLYYKIIPKKKKDVTGEIVLITGAASGLGRLLAIKFASLGAI-LVLWD 67
Query: 586 RTEKCLKETTEEIRQ-MGTECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAAVVHG 762
E+ ET I++ + + CD NR++VY+ A V+++VG++TIL+NNA VV G
Sbjct: 68 INEEGNMETCRIIKEERDAKVFAYTCDCSNRQDVYRVADQVKKEVGNVTILINNAGVVTG 127
Query: 763 KSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAIDYC 942
+ + + D + +S +N + FWT KAFLP MLE +GH+VC++S + I DYC
Sbjct: 128 REFLKTPDHMVERSFLVNVMSHFWTYKAFLPAMLEANHGHLVCISSFAGIVGINELSDYC 187
Query: 943 TSKASAFAFMESL--TLGLLDCPGVSATTVLPFHTSTEMFQGMRVRVPNLFP 1092
SK +A+ F ESL L LL ++ T V P+ T MF+G + P L P
Sbjct: 188 ASKFAAYGFAESLHFELKLLQKSKINTTIVCPYFIKTGMFEGCSTKYPLLLP 239
>ref|NP_777159.1| retinol dehydrogenase 10 [Bos taurus].
Length = 341
Score = 150 bits (378), Expect = 2e-36
Identities = 92/259 (35%), Positives = 135/259 (52%), Gaps = 29/259 (11%)
Frame = +1
Query: 406 VFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVLWG 585
V ++++ V AA ++ K + ++ + LITG G G+GR A EFA R A +VLW
Sbjct: 9 VVTFKVLWAFVLAAARWLVRPKEKSVAGQVCLITGAGSGLGRLFALEFARRRAL-LVLWD 67
Query: 586 RTEKCLKETTEEIRQM-------------------------GTECHYFICDVGNREEVYQ 690
+ +ET +R + + + CDVG RE VY
Sbjct: 68 INTQSNEETAGMVRHIYRDLEAADAAALQAGNGEEEILPHCNLQVFTYTCDVGKRENVYL 127
Query: 691 TAKAVREKVGDITILVNNAAVVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLEL 870
TA+ VR++VG++++LVNNA VV G L++ D+ + ++ +N FWTTKAFLP MLE+
Sbjct: 128 TAERVRKEVGEVSVLVNNAGVVSGHHLLECPDELIERTMMVNCHAHFWTTKAFLPTMLEI 187
Query: 871 QNGHIVCLNSVLALSAIPGAIDYCTSKASAFAFMESLT--LGLLDCPGVSATTVLPFHTS 1044
+GHIV + S L L + G DYC SK F ESL+ L + G+ T V P+
Sbjct: 188 NHGHIVTVASSLGLFSTAGVEDYCASKFGVVGFHESLSHELKAAEKDGIKTTLVCPYLVD 247
Query: 1045 TEMFQGMRVR--VPNLFPP 1095
T MF+G R+R + PP
Sbjct: 248 TGMFRGCRIRKEIEPFLPP 266
>ref|XP_002683809.1| PREDICTED: dehydrogenase/reductase (SDR family) member 3-like [Bos
taurus].
Length = 83
Score = 124 bits (311), Expect = 1e-28
Identities = 63/65 (96%), Positives = 64/65 (98%)
Frame = +1
Query: 376 MVWKWLGALVVFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAE 555
MVWK LGALVVFPLQMIYLVVKAA+GLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAE
Sbjct: 1 MVWKRLGALVVFPLQMIYLVVKAAVGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAE 60
Query: 556 RGARK 570
RGARK
Sbjct: 61 RGARK 65
>ref|NP_001030420.1| dehydrogenase/reductase SDR family member 7B [Bos taurus].
Length = 325
Score = 84.3 bits (207), Expect = 2e-16
Identities = 62/238 (26%), Positives = 114/238 (47%), Gaps = 7/238 (2%)
Frame = +1
Query: 361 SAARRMVWKWLGALVVFPLQMIYLVVKAAIGLVLPAKLRDLSRENVL-ITGGGRGIGRQL 537
S R V ++ + + PL + + + + L+ ++R R V+ ITG G+GR+
Sbjct: 9 SLLRARVMDFITSTAILPLLLGCVGLFSLFKLLQWLRMRAYVRNAVVVITGATSGLGREC 68
Query: 538 AREFAERGARKIVLWGRTEKCLKETTEEI---RQMGTECHY---FICDVGNREEVYQTAK 699
AR F GAR +VL GR + L+E ++E+ R G + H D+ + + A
Sbjct: 69 ARVFHAAGAR-LVLCGRNAEALEELSQELAASRAPGVQTHKPCTVTFDLADPGAIAGAAS 127
Query: 700 AVREKVGDITILVNNAAVVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNG 879
+ + G + +L+NNA + + +++D+ D + N G TKA LP M+ + G
Sbjct: 128 EILQCFGHVDVLINNAGISYRGAIVDTSPDVDKRVMETNYFGPVALTKALLPAMIRRRQG 187
Query: 880 HIVCLNSVLALSAIPGAIDYCTSKASAFAFMESLTLGLLDCPGVSATTVLPFHTSTEM 1053
H+V ++S+ ++P Y SK + AF + L ++ + T + P + T +
Sbjct: 188 HVVAISSIQGKISLPFRSAYAASKHATQAFFDCLR-AEVEQHDIEVTVISPGYIHTNL 244
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,045,450
Number of extensions: 1541205
Number of successful extensions: 8435
Number of sequences better than 1.0e-05: 41
Number of HSP's gapped: 8268
Number of HSP's successfully gapped: 41
Length of query: 365
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 261
Effective length of database: 14,240,222
Effective search space: 3716697942
Effective search space used: 3716697942
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012649
(1095 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127650.1| PREDICTED: short-chain dehydrogenase/reducta... 356 1e-98
Alignment gi|XP_003129386.2| PREDICTED: estradiol 17-beta-dehydrogenase 1... 163 2e-40
Alignment gi|NP_001182297.1| epidermal retinol dehydrogenase 2 [Sus scrof... 162 3e-40
Alignment gi|NP_001230551.1| hydroxysteroid (17-beta) dehydrogenase 13 [S... 155 5e-38
Alignment gi|XP_003355103.1| PREDICTED: LOW QUALITY PROTEIN: short-chain ... 127 1e-29
Alignment gi|XP_001928783.1| PREDICTED: dehydrogenase/reductase SDR famil... 84 1e-16
Alignment gi|XP_001927120.1| PREDICTED: carbonyl reductase family member ... 77 2e-14
Alignment gi|NP_001183950.1| hydroxysteroid dehydrogenase-like protein 2 ... 65 5e-11
Alignment gi|NP_999471.1| peroxisomal multifunctional enzyme type 2 [Sus ... 65 7e-11
Alignment gi|NP_999184.1| dehydrogenase/reductase SDR family member 4 [Su... 63 3e-10
>ref|XP_003127650.1| PREDICTED: short-chain dehydrogenase/reductase 3-like [Sus scrofa].
Length = 261
Score = 356 bits (914), Expect = 1e-98
Identities = 175/179 (97%), Positives = 175/179 (97%)
Frame = +1
Query: 559 GARKIVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITILV 738
G IVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITILV
Sbjct: 21 GEASIVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITILV 80
Query: 739 NNAAVVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSA 918
NNAAVVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSA
Sbjct: 81 NNAAVVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSA 140
Query: 919 IPGAIDYCTSKASAFAFMESLTLGLLDCPGVSATTVLPFHTSTEMFQGMRVRVPNLFPP 1095
IPGAIDYCTSKASAFAFMESLTLGLLDCPGVSATTVLPFHTSTEMFQGMRVR PNLFPP
Sbjct: 141 IPGAIDYCTSKASAFAFMESLTLGLLDCPGVSATTVLPFHTSTEMFQGMRVRFPNLFPP 199
>ref|XP_003129386.2| PREDICTED: estradiol 17-beta-dehydrogenase 11-like [Sus scrofa].
Length = 313
Score = 163 bits (412), Expect = 2e-40
Identities = 89/232 (38%), Positives = 141/232 (60%), Gaps = 2/232 (0%)
Frame = +1
Query: 388 WLGALVVFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGAR 567
+L L++ PL +I+ +++ + L +P K + ++ E VLITG G G+GR A EFA+
Sbjct: 4 FLDVLLLLPLLLIF-TLESLLKLFIPKKRKSVTGEIVLITGAGHGLGRLTAFEFAKLKC- 61
Query: 568 KIVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITILVNNA 747
K+VLW + L+ET +E +++G++ H F+ D +RE++Y +AK V+ +VGD++ILVNNA
Sbjct: 62 KLVLWDINKHGLEETADECKRLGSKAHAFVVDCSDREDIYSSAKKVKAEVGDVSILVNNA 121
Query: 748 AVVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPG 927
VV+ L + D + K+ +N L FWTTKAFLP M++ +GHIV + S + IP
Sbjct: 122 GVVYTSDLFATQDPQIEKTFEVNILAHFWTTKAFLPAMMKNNHGHIVTVASAAGHAGIPF 181
Query: 928 AIDYCTSKASAFAFMESLT--LGLLDCPGVSATTVLPFHTSTEMFQGMRVRV 1077
+ YC+SK +A F ++LT L L GV T + P +T + R +
Sbjct: 182 LLAYCSSKFAAVGFHKALTEELAALKRTGVKTTCLCPNFINTGFIKNPRKEI 233
>ref|NP_001182297.1| epidermal retinol dehydrogenase 2 [Sus scrofa].
Length = 309
Score = 162 bits (410), Expect = 3e-40
Identities = 87/234 (37%), Positives = 137/234 (58%), Gaps = 3/234 (1%)
Frame = +1
Query: 400 LVVFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVL 579
L+VF + I +VV++ + +P + ++ E VLITG G G+GR LA +FA G+ +VL
Sbjct: 11 LLVFLGKSILVVVESLVFTFIPVPRKKVAGEIVLITGAGSGLGRLLALKFARLGS-VLVL 69
Query: 580 WGRTEKCLKETTEEIRQMGTECHY-FICDVGNREEVYQTAKAVREKVGDITILVNNAAVV 756
W ++ +ET + +++ G Y + CD RE+VY+ A V+++VGD++IL+NNA +V
Sbjct: 70 WDINQERNEETRKMVQEAGVAGAYAYTCDCSQREDVYRVASQVKKEVGDVSILINNAGIV 129
Query: 757 HGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAID 936
G+ +D D+ + KS +N WT KAFLP M+ +GH+VC++S L + G D
Sbjct: 130 TGRKFLDCPDELMEKSLDVNFKAHLWTYKAFLPAMIANDHGHLVCISSSAGLIGVYGLAD 189
Query: 937 YCTSKASAFAFMESLTLGLLDC--PGVSATTVLPFHTSTEMFQGMRVRVPNLFP 1092
YC SK +AF F E++ G+ T V PF T+MF+G R+ + P
Sbjct: 190 YCASKFAAFGFAETVFFETFASKQKGIKTTIVCPFFIKTQMFEGCTSRLSYVLP 243
>ref|NP_001230551.1| hydroxysteroid (17-beta) dehydrogenase 13 [Sus scrofa].
Length = 300
Score = 155 bits (391), Expect = 5e-38
Identities = 78/211 (36%), Positives = 128/211 (60%), Gaps = 2/211 (0%)
Frame = +1
Query: 421 MIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVLWGRTEKC 600
+IY +++ + + +P + + ++ E VL+TG G GIGR++A EFA+R +R +VLW +
Sbjct: 14 IIYSYLESLVKVFIPRRRKSVAGEIVLVTGAGHGIGRKIAYEFAKRKSR-LVLWDINKHG 72
Query: 601 LKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAAVVHGKSLMDS 780
L+ET E +++G H F+ D NREE+Y + V+++VGDITI+VNNA ++ L+ +
Sbjct: 73 LEETAAECKKLGATTHAFVVDCSNREEIYNSVNQVKKEVGDITIVVNNAGTIYPADLLST 132
Query: 781 DDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAIDYCTSKASA 960
D+ + + +N LG FW TKA LP M+ +GH+V + S+ IP I YC+SK +A
Sbjct: 133 KDEEITITFEVNILGHFWITKALLPAMMSRNHGHVVTVASLCGHGVIPYLIPYCSSKFAA 192
Query: 961 FAFMESLT--LGLLDCPGVSATTVLPFHTST 1047
F +LT L + G+ + + P +T
Sbjct: 193 VGFHRALTAELEAVGKTGIKTSCLCPVFVNT 223
>ref|XP_003355103.1| PREDICTED: LOW QUALITY PROTEIN: short-chain dehydrogenase/reductase
family 16C member 6-like [Sus scrofa].
Length = 373
Score = 127 bits (319), Expect = 1e-29
Identities = 84/279 (30%), Positives = 129/279 (46%), Gaps = 50/279 (17%)
Frame = +1
Query: 406 VFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVLWG 585
VF + +Y +++ ++P K +D+S E VLI G G+GR +A E A GA +VLW
Sbjct: 9 VFWGKFLYYFLESLFFKIIPKKKKDVSGEIVLIKGASSGLGRLMAIELASLGAI-LVLWD 67
Query: 586 RTEKCLKETTEEIRQMGT-ECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAAVVHG 762
E+ ET +++ G + + CD +R+EVY+ AK V+ VGD+TIL+NN V+ G
Sbjct: 68 INEENNMETCRLVKEKGAVKAFAYKCDCSHRQEVYRVAKQVKRDVGDVTILINNTGVITG 127
Query: 763 KSLMDSDDDALLKSQHINTLGQFWT-----------------TKAFLPRMLELQ------ 873
K +D+ D + ++ H N L FW + FL + L+
Sbjct: 128 KQFLDTPDHMVERTFHTNALSHFWAPLKGCLPGPSSSLIDWLSNLFLTGSISLKLRRQRG 187
Query: 874 ------------------------NGHIVCLNSVLALSAIPGAIDYCTSKASAFAFMESL 981
+GH+VC+ S+ L + G Y SK +AF ESL
Sbjct: 188 APLPSSGRPCSLKPPANDDSGSITHGHLVCITSIAGLLVVSGLSHYSASKFAAFGLAESL 247
Query: 982 T--LGLLDCPGVSATTVLPFHTSTEMFQGMRVRVPNLFP 1092
L L + T V P+ +T MF G ++ P L+P
Sbjct: 248 NLELSLQQKSKIKTTIVCPYFINTGMFDGCTIKYPFLWP 286
>ref|XP_001928783.1| PREDICTED: dehydrogenase/reductase SDR family member 7 [Sus scrofa].
Length = 339
Score = 84.0 bits (206), Expect = 1e-16
Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 3/182 (1%)
Frame = +1
Query: 496 VLITGGGRGIGRQLAREFAERGARKIVLWGRT---EKCLKETTEEIRQMGTECHYFICDV 666
V +TG GIG +L + ++ G ++ R E+ + E G + D+
Sbjct: 53 VWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLDL 112
Query: 667 GNREEVYQTAKAVREKVGDITILVNNAAVVHGKSLMDSDDDALLKSQHINTLGQFWTTKA 846
NR KAV ++ G I ILVNN V +D+ D + +N LG TK
Sbjct: 113 ANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTKC 172
Query: 847 FLPRMLELQNGHIVCLNSVLALSAIPGAIDYCTSKASAFAFMESLTLGLLDCPGVSATTV 1026
LP M+E + G I+ +NS + + A P + YC SK + F +L L PG++ + V
Sbjct: 173 VLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITVSNV 232
Query: 1027 LP 1032
P
Sbjct: 233 CP 234
>ref|XP_001927120.1| PREDICTED: carbonyl reductase family member 4-like [Sus scrofa].
Length = 237
Score = 77.0 bits (188), Expect = 2e-14
Identities = 52/189 (27%), Positives = 85/189 (44%)
Frame = +1
Query: 502 ITGGGRGIGRQLAREFAERGARKIVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREE 681
+ GG RGIGR +AR A+RG R ++ + L+ +G + CDV ++
Sbjct: 7 VFGGSRGIGRAVARLMAQRGYRLAIV----ARNLQGARAVAGDLGGDHLALSCDVAKEQD 62
Query: 682 VYQTAKAVREKVGDITILVNNAAVVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRM 861
V T + + + +G + LVN A + L+ + + +L N LG T KA + M
Sbjct: 63 VQSTFEEIEKNLGPVNFLVNAAGINRDNLLVRTSTEDMLCQLQTNLLGSMLTCKAAVKTM 122
Query: 862 LELQNGHIVCLNSVLALSAIPGAIDYCTSKASAFAFMESLTLGLLDCPGVSATTVLPFHT 1041
++ Q G IV + SV+ L PG Y SK F +L + + V P
Sbjct: 123 IKQQGGSIVNIGSVVGLKGNPGQSVYSASKGGLVGFSRALAKEVAK-KKIRVNVVAPGFV 181
Query: 1042 STEMFQGMR 1068
T+M + ++
Sbjct: 182 HTDMTKDLK 190
>ref|NP_001183950.1| hydroxysteroid dehydrogenase-like protein 2 [Sus scrofa].
Length = 418
Score = 65.5 bits (158), Expect = 5e-11
Identities = 42/148 (28%), Positives = 76/148 (51%), Gaps = 6/148 (4%)
Frame = +1
Query: 496 VLITGGGRGIGRQLAREFAERGARKIVLWGRTEKCLK------ETTEEIRQMGTECHYFI 657
V ITG RGIG+ +A + A+ GA ++ T+ K EEI+ G + +
Sbjct: 13 VFITGASRGIGKAIALKAAKDGANVVIAAKTTQTHPKLQGTIYTAAEEIQAAGGKALPCV 72
Query: 658 CDVGNREEVYQTAKAVREKVGDITILVNNAAVVHGKSLMDSDDDALLKSQHINTLGQFWT 837
DV + +++ + EK G I ILVNNA+ + + +++ + ++NT G + T
Sbjct: 73 VDVRDEQQISDAVEKAVEKFGGIDILVNNASAISLTNTLETPTKRVDLMMNVNTRGTYLT 132
Query: 838 TKAFLPRMLELQNGHIVCLNSVLALSAI 921
+KA +P + + + HI+ L+ L L+ +
Sbjct: 133 SKACIPYLKKSRIAHILNLSPPLNLNPL 160
>ref|NP_999471.1| peroxisomal multifunctional enzyme type 2 [Sus scrofa].
Length = 737
Score = 65.1 bits (157), Expect = 7e-11
Identities = 47/172 (27%), Positives = 75/172 (43%), Gaps = 8/172 (4%)
Frame = +1
Query: 496 VLITGGGRGIGRQLAREFAERGARKIVL--------WGRTEKCLKETTEEIRQMGTECHY 651
VL+TG G G+GR A FAERGA +V G+ + EEIR+ G +
Sbjct: 12 VLVTGAGGGLGRTYALAFAERGASVVVNDLGGDMKGVGKGSLAADKVVEEIRRKGGKA-- 69
Query: 652 FICDVGNREEVYQTAKAVREKVGDITILVNNAAVVHGKSLMDSDDDALLKSQHINTLGQF 831
+ + + E + KA + G I ++VNNA ++ +S D+ Q ++ G F
Sbjct: 70 -VANYDSVEAGEKIVKAALDAFGRIDVVVNNAGILRDRSFSRISDEDWDMIQRVHLRGSF 128
Query: 832 WTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAIDYCTSKASAFAFMESLTL 987
T+A M + G I+ +S + G +Y +K SL +
Sbjct: 129 MVTRAAWDHMKKQNFGRIIMTSSAAGIYGNFGQANYSAAKLGLLGLSNSLAV 180
>ref|NP_999184.1| dehydrogenase/reductase SDR family member 4 [Sus scrofa].
Length = 260
Score = 62.8 bits (151), Expect = 3e-10
Identities = 46/174 (26%), Positives = 80/174 (45%), Gaps = 1/174 (0%)
Frame = +1
Query: 475 RDLSRENVLITGGGRGIGRQLAREFAERGARKIVLWGRTEKCLKETTEEIRQMGTECHYF 654
+ L + L+T GIG +AR A+ GA +V+ R ++ + T ++ G
Sbjct: 10 KPLENKVALVTASTDGIGLAIARRLAQDGAH-VVVSSRKQENVDRTVATLQGEGLSVTGT 68
Query: 655 ICDVGNREEVYQTAKAVREKVGDITILVNNAAV-VHGKSLMDSDDDALLKSQHINTLGQF 831
+C VG E+ + G + ILV+NAAV +++D+ ++ K H+N
Sbjct: 69 VCHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATV 128
Query: 832 WTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAIDYCTSKASAFAFMESLTLGL 993
TKA +P M + G ++ ++SV A P Y SK + ++L + L
Sbjct: 129 LMTKAVVPEMEKRGGGSVLIVSSVGAYHPFPNLGPYNVSKTALLGLTKNLAVEL 182
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,021,487
Number of extensions: 1027048
Number of successful extensions: 5468
Number of sequences better than 1.0e-05: 33
Number of HSP's gapped: 5369
Number of HSP's successfully gapped: 34
Length of query: 365
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 265
Effective length of database: 8,854,232
Effective search space: 2346371480
Effective search space used: 2346371480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012649
(1095 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035433.1| short-chain dehydrogenase/reductase 3 isoform 1... 469 e-132
Alignment gi|NP_001165895.1| short-chain dehydrogenase/reductase 3 isofor... 419 e-117
Alignment gi|NP_001074179.1| short-chain dehydrogenase/reductase family 1... 172 4e-43
Alignment gi|NP_871789.1| epidermal retinol dehydrogenase 2 [Mus musculus]. 164 1e-40
Alignment gi|NP_444492.1| estradiol 17-beta-dehydrogenase 11 [Mus musculu... 159 5e-39
Alignment gi|NP_001156958.1| 17-beta-hydroxysteroid dehydrogenase 13 isof... 151 1e-36
Alignment gi|NP_932147.2| 17-beta-hydroxysteroid dehydrogenase 13 isoform... 151 1e-36
Alignment gi|NP_598593.1| retinol dehydrogenase 10 [Mus musculus]. 150 2e-36
Alignment gi|NP_001165583.1| dehydrogenase/reductase SDR family member 7B... 84 2e-16
Alignment gi|NP_663403.1| dehydrogenase/reductase SDR family member 7B is... 84 2e-16
>ref|NP_035433.1| short-chain dehydrogenase/reductase 3 isoform 1 [Mus musculus].
Length = 302
Score = 469 bits (1207), Expect = e-132
Identities = 231/240 (96%), Positives = 235/240 (97%)
Frame = +1
Query: 376 MVWKWLGALVVFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAE 555
MVWKWLGALVVFPLQMIYLV KAA+G+VLP KLRDLSRE+VLITGGGRGIGR LAREFAE
Sbjct: 1 MVWKWLGALVVFPLQMIYLVTKAAVGMVLPPKLRDLSRESVLITGGGRGIGRHLAREFAE 60
Query: 556 RGARKIVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITIL 735
RGARKIVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQ AKAVREKVGDITIL
Sbjct: 61 RGARKIVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQMAKAVREKVGDITIL 120
Query: 736 VNNAAVVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALS 915
VNNAAVVHGKSLMDSDDDALLKSQH+NTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALS
Sbjct: 121 VNNAAVVHGKSLMDSDDDALLKSQHVNTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALS 180
Query: 916 AIPGAIDYCTSKASAFAFMESLTLGLLDCPGVSATTVLPFHTSTEMFQGMRVRVPNLFPP 1095
AIPGAIDYCTSKASAFAFMESLTLGLLDCPGVSATTVLPFHTSTEMFQGMRVR PNLFPP
Sbjct: 181 AIPGAIDYCTSKASAFAFMESLTLGLLDCPGVSATTVLPFHTSTEMFQGMRVRFPNLFPP 240
>ref|NP_001165895.1| short-chain dehydrogenase/reductase 3 isoform 2 [Mus musculus].
Length = 276
Score = 419 bits (1077), Expect = e-117
Identities = 207/214 (96%), Positives = 210/214 (98%)
Frame = +1
Query: 454 LVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVLWGRTEKCLKETTEEIRQM 633
+VLP KLRDLSRE+VLITGGGRGIGR LAREFAERGARKIVLWGRTEKCLKETTEEIRQM
Sbjct: 1 MVLPPKLRDLSRESVLITGGGRGIGRHLAREFAERGARKIVLWGRTEKCLKETTEEIRQM 60
Query: 634 GTECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAAVVHGKSLMDSDDDALLKSQHI 813
GTECHYFICDVGNREEVYQ AKAVREKVGDITILVNNAAVVHGKSLMDSDDDALLKSQH+
Sbjct: 61 GTECHYFICDVGNREEVYQMAKAVREKVGDITILVNNAAVVHGKSLMDSDDDALLKSQHV 120
Query: 814 NTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAIDYCTSKASAFAFMESLTLGL 993
NTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAIDYCTSKASAFAFMESLTLGL
Sbjct: 121 NTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAIDYCTSKASAFAFMESLTLGL 180
Query: 994 LDCPGVSATTVLPFHTSTEMFQGMRVRVPNLFPP 1095
LDCPGVSATTVLPFHTSTEMFQGMRVR PNLFPP
Sbjct: 181 LDCPGVSATTVLPFHTSTEMFQGMRVRFPNLFPP 214
>ref|NP_001074179.1| short-chain dehydrogenase/reductase family 16C member 6 [Mus
musculus].
Length = 316
Score = 172 bits (436), Expect = 4e-43
Identities = 96/232 (41%), Positives = 141/232 (60%), Gaps = 3/232 (1%)
Frame = +1
Query: 406 VFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVLWG 585
+F + +Y +++ + V+P + +D+S E VLITG G G+GR LA FA GA +VLW
Sbjct: 9 IFFGKFLYYFLESLVFKVIPKRKKDVSGEIVLITGAGSGLGRLLAIHFASHGAT-LVLWD 67
Query: 586 RTEKCLKETTEEIRQMG-TECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAAVVHG 762
++ ET ++Q G + + CD +R EVY+ A V+E+VGD+TIL+NNA VV G
Sbjct: 68 INQEGNMETCRLVKQKGDVKVFAYKCDCSSRIEVYRVADQVKEEVGDVTILINNAGVVTG 127
Query: 763 KSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAIDYC 942
KS +++ D + KS +N + FWT KAFLP M++ +GH+VC++S+ L I G DY
Sbjct: 128 KSFLNTPDHLVEKSFLVNAISHFWTCKAFLPAMVKANHGHLVCISSIAGLVGINGLSDYS 187
Query: 943 TSKASAFAFMESLTLGL--LDCPGVSATTVLPFHTSTEMFQGMRVRVPNLFP 1092
+SK +AF F ESL L L + V +T V P+ T MF+G + P L P
Sbjct: 188 SSKFAAFGFAESLFLELTMIMKTKVKSTIVCPYFIKTGMFEGCTTKYPLLLP 239
>ref|NP_871789.1| epidermal retinol dehydrogenase 2 [Mus musculus].
Length = 309
Score = 164 bits (415), Expect = 1e-40
Identities = 91/234 (38%), Positives = 135/234 (57%), Gaps = 3/234 (1%)
Frame = +1
Query: 400 LVVFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVL 579
L+VF + + V++A + V+ ++++ E VLITG G G+GR LA +FA GA +VL
Sbjct: 11 LLVFLGKSLLSVLEALLFHVISKPRKNVAGEIVLITGAGSGLGRLLALQFARLGA-VLVL 69
Query: 580 WGRTEKCLKETTEEIRQMGT-ECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAAVV 756
W ++ ET + R+ G H + CD REEVY+ A V+++VGD++IL+NNA +V
Sbjct: 70 WDVNKEANDETHQLAREAGAARVHAYTCDCSRREEVYRVADQVKKEVGDVSILINNAGIV 129
Query: 757 HGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAID 936
G++ +D DD + KS +N W KAFLP M+ +GH+VC++S L + G D
Sbjct: 130 TGRNFLDCPDDLMEKSFDVNFKAHLWMYKAFLPAMIANNHGHLVCISSSAGLIGVNGLSD 189
Query: 937 YCTSKASAFAFMESLTLGLLDCP--GVSATTVLPFHTSTEMFQGMRVRVPNLFP 1092
YC SK +A F ES+ + L G+ T V PF T MF+G + P L P
Sbjct: 190 YCASKFAALGFAESMFIETLAKKQWGIKTTIVCPFFIKTGMFEGCTTKCPTLLP 243
>ref|NP_444492.1| estradiol 17-beta-dehydrogenase 11 [Mus musculus].
Length = 298
Score = 159 bits (401), Expect = 5e-39
Identities = 86/221 (38%), Positives = 133/221 (60%), Gaps = 2/221 (0%)
Frame = +1
Query: 391 LGALVVFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARK 570
L +++ PL +++ + ++ + L +P K + ++ E VLITG G GIGR A EFA+ K
Sbjct: 5 LDLILLLPLLIVFSI-ESLVKLFIPKKKKSVAGEIVLITGAGHGIGRLTAYEFAKLNT-K 62
Query: 571 IVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAA 750
+VLW + ++ET + R++G + H F+ D REE+Y AK V+E+VGD++ILVNNA
Sbjct: 63 LVLWDINKNGIEETAAKCRKLGAQAHPFVVDCSQREEIYSAAKKVKEEVGDVSILVNNAG 122
Query: 751 VVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGA 930
VV+ L + D + K+ +N L FWTTKAFLP M++ +GHIV + S + +P
Sbjct: 123 VVYTADLFATQDPQIEKTFEVNVLAHFWTTKAFLPVMMKNNHGHIVTVASAAGHTVVPFL 182
Query: 931 IDYCTSKASAFAFMESLT--LGLLDCPGVSATTVLPFHTST 1047
+ YC+SK +A F +LT L L GV + + P +T
Sbjct: 183 LAYCSSKFAAVGFHRALTDELAALGRTGVRTSCLCPNFINT 223
>ref|NP_001156958.1| 17-beta-hydroxysteroid dehydrogenase 13 isoform 1 [Mus musculus].
Length = 300
Score = 151 bits (381), Expect = 1e-36
Identities = 79/227 (34%), Positives = 129/227 (56%), Gaps = 2/227 (0%)
Frame = +1
Query: 421 MIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVLWGRTEKC 600
+IY +++ + +P + + ++ + VLITG G GIGR A EFA++ +R +VLW ++
Sbjct: 14 IIYSYLESLVKFFIPRRRKSVTGQTVLITGAGHGIGRLTAYEFAKQKSR-LVLWDINKRG 72
Query: 601 LKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAAVVHGKSLMDS 780
++ET ++ R++G H F+ D NR E+Y + V+ +VGD+ I+VNNA ++ L+ +
Sbjct: 73 VEETADKCRKLGAVVHVFVVDCSNRAEIYNSVDQVKREVGDVEIVVNNAGAIYPADLLSA 132
Query: 781 DDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAIDYCTSKASA 960
D+ + K+ +N LG FW KA LP ML +GHIV + SV IP I YC+SK +A
Sbjct: 133 KDEEITKTFEVNILGHFWIIKALLPSMLRRNSGHIVTVASVCGHGVIPYLIPYCSSKFAA 192
Query: 961 FAFMESLT--LGLLDCPGVSATTVLPFHTSTEMFQGMRVRVPNLFPP 1095
F +LT L L G+ + + P +T + R+ + P
Sbjct: 193 VGFHRALTAELDTLGKTGIQTSCLCPVFVNTGFTKNPSTRLWPVLEP 239
>ref|NP_932147.2| 17-beta-hydroxysteroid dehydrogenase 13 isoform 2 [Mus musculus].
Length = 304
Score = 151 bits (381), Expect = 1e-36
Identities = 79/227 (34%), Positives = 129/227 (56%), Gaps = 2/227 (0%)
Frame = +1
Query: 421 MIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVLWGRTEKC 600
+IY +++ + +P + + ++ + VLITG G GIGR A EFA++ +R +VLW ++
Sbjct: 14 IIYSYLESLVKFFIPRRRKSVTGQTVLITGAGHGIGRLTAYEFAKQKSR-LVLWDINKRG 72
Query: 601 LKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAAVVHGKSLMDS 780
++ET ++ R++G H F+ D NR E+Y + V+ +VGD+ I+VNNA ++ L+ +
Sbjct: 73 VEETADKCRKLGAVVHVFVVDCSNRAEIYNSVDQVKREVGDVEIVVNNAGAIYPADLLSA 132
Query: 781 DDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAIDYCTSKASA 960
D+ + K+ +N LG FW KA LP ML +GHIV + SV IP I YC+SK +A
Sbjct: 133 KDEEITKTFEVNILGHFWIIKALLPSMLRRNSGHIVTVASVCGHGVIPYLIPYCSSKFAA 192
Query: 961 FAFMESLT--LGLLDCPGVSATTVLPFHTSTEMFQGMRVRVPNLFPP 1095
F +LT L L G+ + + P +T + R+ + P
Sbjct: 193 VGFHRALTAELDTLGKTGIQTSCLCPVFVNTGFTKNPSTRLWPVLEP 239
>ref|NP_598593.1| retinol dehydrogenase 10 [Mus musculus].
Length = 341
Score = 150 bits (378), Expect = 2e-36
Identities = 92/259 (35%), Positives = 135/259 (52%), Gaps = 29/259 (11%)
Frame = +1
Query: 406 VFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVLWG 585
V ++++ V AA ++ K + ++ + LITG G G+GR A EFA R A +VLW
Sbjct: 9 VVTFKVLWAFVLAAARWLVRPKEKSVAGQVCLITGAGSGLGRLFALEFARRRAL-LVLWD 67
Query: 586 RTEKCLKETTEEIRQM-------------------------GTECHYFICDVGNREEVYQ 690
+ +ET +R + + + CDVG RE VY
Sbjct: 68 INTQSNEETAGMVRHIYRDLEAADAAALQAGKGEEEILPPCNLQVFTYTCDVGKRENVYL 127
Query: 691 TAKAVREKVGDITILVNNAAVVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLEL 870
TA+ VR++VG++++LVNNA VV G L++ D+ + ++ +N FWTTKAFLP MLE+
Sbjct: 128 TAERVRKEVGEVSVLVNNAGVVSGHHLLECPDELIERTMMVNCHAHFWTTKAFLPTMLEI 187
Query: 871 QNGHIVCLNSVLALSAIPGAIDYCTSKASAFAFMESLT--LGLLDCPGVSATTVLPFHTS 1044
+GHIV + S L L + G DYC SK F ESL+ L + G+ T V P+
Sbjct: 188 NHGHIVTVASSLGLFSTAGVEDYCASKFGVVGFHESLSHELKAAEKDGIKTTLVCPYLVD 247
Query: 1045 TEMFQGMRVR--VPNLFPP 1095
T MF+G R+R + PP
Sbjct: 248 TGMFRGCRIRKEIEPFLPP 266
>ref|NP_001165583.1| dehydrogenase/reductase SDR family member 7B isoform 1 [Mus
musculus].
Length = 314
Score = 84.0 bits (206), Expect = 2e-16
Identities = 57/190 (30%), Positives = 94/190 (49%), Gaps = 4/190 (2%)
Frame = +1
Query: 496 VLITGGGRGIGRQLAREFAERGARKIVLWGRTEKCLKETTEEIR--QMGTECHYFIC--D 663
V++TG G+GR+ A+ F GA K+VL GR K L+E + E+ G F+ D
Sbjct: 46 VVVTGATSGLGRECAKVFHAAGA-KLVLCGRNVKALEELSRELAGSSQGQTHQPFVVTFD 104
Query: 664 VGNREEVYQTAKAVREKVGDITILVNNAAVVHGKSLMDSDDDALLKSQHINTLGQFWTTK 843
+ + + A + + G + +L+NNA + + ++ D+ D K IN G TK
Sbjct: 105 LADPGTIAAAAAEILQCFGYVDVLINNAGISYRGTISDTIVDVDRKVMEINYFGPVALTK 164
Query: 844 AFLPRMLELQNGHIVCLNSVLALSAIPGAIDYCTSKASAFAFMESLTLGLLDCPGVSATT 1023
A LP M+E + GHIV ++S+ +IP Y SK + AF + L + + + T
Sbjct: 165 ALLPSMVERKQGHIVAISSIQGKISIPFRSAYSASKHATQAFFDCLRAEMEEA-NIKVTV 223
Query: 1024 VLPFHTSTEM 1053
+ P + T +
Sbjct: 224 ISPGYIHTNL 233
>ref|NP_663403.1| dehydrogenase/reductase SDR family member 7B isoform 2 [Mus
musculus].
Length = 323
Score = 84.0 bits (206), Expect = 2e-16
Identities = 57/190 (30%), Positives = 94/190 (49%), Gaps = 4/190 (2%)
Frame = +1
Query: 496 VLITGGGRGIGRQLAREFAERGARKIVLWGRTEKCLKETTEEIR--QMGTECHYFIC--D 663
V++TG G+GR+ A+ F GA K+VL GR K L+E + E+ G F+ D
Sbjct: 55 VVVTGATSGLGRECAKVFHAAGA-KLVLCGRNVKALEELSRELAGSSQGQTHQPFVVTFD 113
Query: 664 VGNREEVYQTAKAVREKVGDITILVNNAAVVHGKSLMDSDDDALLKSQHINTLGQFWTTK 843
+ + + A + + G + +L+NNA + + ++ D+ D K IN G TK
Sbjct: 114 LADPGTIAAAAAEILQCFGYVDVLINNAGISYRGTISDTIVDVDRKVMEINYFGPVALTK 173
Query: 844 AFLPRMLELQNGHIVCLNSVLALSAIPGAIDYCTSKASAFAFMESLTLGLLDCPGVSATT 1023
A LP M+E + GHIV ++S+ +IP Y SK + AF + L + + + T
Sbjct: 174 ALLPSMVERKQGHIVAISSIQGKISIPFRSAYSASKHATQAFFDCLRAEMEEA-NIKVTV 232
Query: 1024 VLPFHTSTEM 1053
+ P + T +
Sbjct: 233 ISPGYIHTNL 242
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,312,937
Number of extensions: 1250798
Number of successful extensions: 6804
Number of sequences better than 1.0e-05: 50
Number of HSP's gapped: 6595
Number of HSP's successfully gapped: 51
Length of query: 365
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 262
Effective length of database: 12,523,851
Effective search space: 3281248962
Effective search space used: 3281248962
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012649
(1095 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004744.2| short-chain dehydrogenase/reductase 3 [Homo sap... 473 e-133
Alignment gi|NP_620419.2| epidermal retinol dehydrogenase 2 [Homo sapiens]. 168 9e-42
Alignment gi|NP_835236.2| 17-beta-hydroxysteroid dehydrogenase 13 isoform... 159 4e-39
Alignment gi|NP_057329.2| estradiol 17-beta-dehydrogenase 11 [Homo sapien... 156 4e-38
Alignment gi|NP_742034.1| retinol dehydrogenase 10 [Homo sapiens]. 150 3e-36
Alignment gi|NP_001129702.1| 17-beta-hydroxysteroid dehydrogenase 13 isof... 113 4e-25
Alignment gi|NP_057113.1| dehydrogenase/reductase SDR family member 7 pre... 83 4e-16
Alignment gi|NP_056325.2| dehydrogenase/reductase SDR family member 7B [H... 79 1e-14
Alignment gi|NP_116172.2| carbonyl reductase family member 4 [Homo sapien... 73 5e-13
Alignment gi|NP_066284.2| dehydrogenase/reductase SDR family member 4 [Ho... 68 1e-11
>ref|NP_004744.2| short-chain dehydrogenase/reductase 3 [Homo sapiens].
Length = 302
Score = 473 bits (1218), Expect = e-133
Identities = 236/240 (98%), Positives = 238/240 (99%)
Frame = +1
Query: 376 MVWKWLGALVVFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAE 555
MVWK LGALV+FPLQMIYLVVKAA+GLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAE
Sbjct: 1 MVWKRLGALVMFPLQMIYLVVKAAVGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAE 60
Query: 556 RGARKIVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITIL 735
RGARKIVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITIL
Sbjct: 61 RGARKIVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITIL 120
Query: 736 VNNAAVVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALS 915
VNNAAVVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALS
Sbjct: 121 VNNAAVVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALS 180
Query: 916 AIPGAIDYCTSKASAFAFMESLTLGLLDCPGVSATTVLPFHTSTEMFQGMRVRVPNLFPP 1095
AIPGAIDYCTSKASAFAFMESLTLGLLDCPGVSATTVLPFHTSTEMFQGMRVR PNLFPP
Sbjct: 181 AIPGAIDYCTSKASAFAFMESLTLGLLDCPGVSATTVLPFHTSTEMFQGMRVRFPNLFPP 240
>ref|NP_620419.2| epidermal retinol dehydrogenase 2 [Homo sapiens].
Length = 309
Score = 168 bits (425), Expect = 9e-42
Identities = 91/234 (38%), Positives = 139/234 (59%), Gaps = 3/234 (1%)
Frame = +1
Query: 400 LVVFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVL 579
L +F + ++ +++A I +LP ++++ E VLITG G G+GR LA +FA G+ +VL
Sbjct: 11 LFIFLGKSLFSLLEAMIFALLPKPRKNVAGEIVLITGAGSGLGRLLALQFARLGS-VLVL 69
Query: 580 WGRTEKCLKETTEEIRQMG-TECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAAVV 756
W ++ +ET + R+ G T H + CD +E VY+ A V+++VGD++IL+NNA +V
Sbjct: 70 WDINKEGNEETCKMAREAGATRVHAYTCDCSQKEGVYRVADQVKKEVGDVSILINNAGIV 129
Query: 757 HGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAID 936
GK +D D+ + KS +N WT KAFLP M+ +GH+VC++S LS + G D
Sbjct: 130 TGKKFLDCPDELMEKSFDVNFKAHLWTYKAFLPAMIANDHGHLVCISSSAGLSGVNGLAD 189
Query: 937 YCTSKASAFAFMESLTLG--LLDCPGVSATTVLPFHTSTEMFQGMRVRVPNLFP 1092
YC SK +AF F ES+ + + G+ T V PF T MF+G P+L P
Sbjct: 190 YCASKFAAFGFAESVFVETFVQKQKGIKTTIVCPFFIKTGMFEGCTTGCPSLLP 243
>ref|NP_835236.2| 17-beta-hydroxysteroid dehydrogenase 13 isoform A [Homo sapiens].
Length = 300
Score = 159 bits (402), Expect = 4e-39
Identities = 82/218 (37%), Positives = 131/218 (60%), Gaps = 2/218 (0%)
Frame = +1
Query: 400 LVVFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVL 579
+++ + +IY +++ + +P + + ++ E VLITG G GIGRQ EFA+R + +VL
Sbjct: 7 ILLLLITIIYSYLESLVKFFIPQRRKSVAGEIVLITGAGHGIGRQTTYEFAKRQSI-LVL 65
Query: 580 WGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAAVVH 759
W ++ ++ET E R++G H ++ D NREE+Y++ V+++VGD+TI+VNNA V+
Sbjct: 66 WDINKRGVEETAAECRKLGVTAHAYVVDCSNREEIYRSLNQVKKEVGDVTIVVNNAGTVY 125
Query: 760 GKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAIDY 939
L+ + D+ + K+ +N LG FW TKA LP M+E +GHIV + SV IP I Y
Sbjct: 126 PADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPY 185
Query: 940 CTSKASAFAFMESLT--LGLLDCPGVSATTVLPFHTST 1047
C+SK +A F LT L L G+ + + P +T
Sbjct: 186 CSSKFAAVGFHRGLTSELQALGKTGIKTSCLCPVFVNT 223
>ref|NP_057329.2| estradiol 17-beta-dehydrogenase 11 [Homo sapiens].
Length = 300
Score = 156 bits (394), Expect = 4e-38
Identities = 86/221 (38%), Positives = 133/221 (60%), Gaps = 2/221 (0%)
Frame = +1
Query: 391 LGALVVFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARK 570
L L++ PL +I +++ + L +P + + ++ E VLITG G GIGR A EFA+ + K
Sbjct: 5 LDILLLLPL-LIVCSLESFVKLFIPKRRKSVTGEIVLITGAGHGIGRLTAYEFAKLKS-K 62
Query: 571 IVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAA 750
+VLW + L+ET + + +G + H F+ D NRE++Y +AK V+ ++GD++ILVNNA
Sbjct: 63 LVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGDVSILVNNAG 122
Query: 751 VVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGA 930
VV+ L + D + K+ +N L FWTTKAFLP M + +GHIV + S ++P
Sbjct: 123 VVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVSVPFL 182
Query: 931 IDYCTSKASAFAFMESLT--LGLLDCPGVSATTVLPFHTST 1047
+ YC+SK +A F ++LT L L GV T + P +T
Sbjct: 183 LAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNT 223
>ref|NP_742034.1| retinol dehydrogenase 10 [Homo sapiens].
Length = 341
Score = 150 bits (378), Expect = 3e-36
Identities = 92/259 (35%), Positives = 135/259 (52%), Gaps = 29/259 (11%)
Frame = +1
Query: 406 VFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVLWG 585
V ++++ V AA ++ K + ++ + LITG G G+GR A EFA R A +VLW
Sbjct: 9 VVTFKVLWAFVLAAARWLVRPKEKSVAGQVCLITGAGSGLGRLFALEFARRRAL-LVLWD 67
Query: 586 RTEKCLKETTEEIRQM-------------------------GTECHYFICDVGNREEVYQ 690
+ +ET +R + + + CDVG RE VY
Sbjct: 68 INTQSNEETAGMVRHIYRDLEAADAAALQAGNGEEEILPHCNLQVFTYTCDVGKRENVYL 127
Query: 691 TAKAVREKVGDITILVNNAAVVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLEL 870
TA+ VR++VG++++LVNNA VV G L++ D+ + ++ +N FWTTKAFLP MLE+
Sbjct: 128 TAERVRKEVGEVSVLVNNAGVVSGHHLLECPDELIERTMMVNCHAHFWTTKAFLPTMLEI 187
Query: 871 QNGHIVCLNSVLALSAIPGAIDYCTSKASAFAFMESLT--LGLLDCPGVSATTVLPFHTS 1044
+GHIV + S L L + G DYC SK F ESL+ L + G+ T V P+
Sbjct: 188 NHGHIVTVASSLGLFSTAGVEDYCASKFGVVGFHESLSHELKAAEKDGIKTTLVCPYLVD 247
Query: 1045 TEMFQGMRVR--VPNLFPP 1095
T MF+G R+R + PP
Sbjct: 248 TGMFRGCRIRKEIEPFLPP 266
>ref|NP_001129702.1| 17-beta-hydroxysteroid dehydrogenase 13 isoform B [Homo sapiens].
Length = 264
Score = 113 bits (282), Expect = 4e-25
Identities = 71/218 (32%), Positives = 110/218 (50%), Gaps = 2/218 (0%)
Frame = +1
Query: 400 LVVFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVL 579
+++ + +IY +++ + +P + + ++ E VLITG G GIGRQ EFA+R + +VL
Sbjct: 7 ILLLLITIIYSYLESLVKFFIPQRRKSVAGEIVLITGAGHGIGRQTTYEFAKRQSI-LVL 65
Query: 580 WGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAAVVH 759
W D+ V+++VGD+TI+VNNA V+
Sbjct: 66 W--------------------------DINK----------VKKEVGDVTIVVNNAGTVY 89
Query: 760 GKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAIDY 939
L+ + D+ + K+ +N LG FW TKA LP M+E +GHIV + SV IP I Y
Sbjct: 90 PADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPY 149
Query: 940 CTSKASAFAFMESLT--LGLLDCPGVSATTVLPFHTST 1047
C+SK +A F LT L L G+ + + P +T
Sbjct: 150 CSSKFAAVGFHRGLTSELQALGKTGIKTSCLCPVFVNT 187
>ref|NP_057113.1| dehydrogenase/reductase SDR family member 7 precursor [Homo sapiens].
Length = 339
Score = 83.2 bits (204), Expect = 4e-16
Identities = 59/186 (31%), Positives = 85/186 (45%), Gaps = 7/186 (3%)
Frame = +1
Query: 496 VLITGGGRGIGRQLAREFAERGARKIVLWGRTEKCLKETTEEIRQMGTECHYFIC----- 660
V +TG GIG +LA + ++ G +VL R L+ + G I
Sbjct: 53 VWVTGASSGIGEELAYQLSKLGV-SLVLSARRVHELERVKRRCLENGNLKEKDILVLPLD 111
Query: 661 --DVGNREEVYQTAKAVREKVGDITILVNNAAVVHGKSLMDSDDDALLKSQHINTLGQFW 834
D G+ E KAV ++ G I ILVNN + MD+ D K +N LG
Sbjct: 112 LTDTGSHEAA---TKAVLQEFGRIDILVNNGGMSQRSLCMDTSLDVYRKLIELNYLGTVS 168
Query: 835 TTKAFLPRMLELQNGHIVCLNSVLALSAIPGAIDYCTSKASAFAFMESLTLGLLDCPGVS 1014
TK LP M+E + G IV +NS+L + ++P +I YC SK + F L L PG+
Sbjct: 169 LTKCVLPHMIERKQGKIVTVNSILGIISVPLSIGYCASKHALRGFFNGLRTELATYPGII 228
Query: 1015 ATTVLP 1032
+ + P
Sbjct: 229 VSNICP 234
>ref|NP_056325.2| dehydrogenase/reductase SDR family member 7B [Homo sapiens].
Length = 325
Score = 78.6 bits (192), Expect = 1e-14
Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 6/168 (3%)
Frame = +1
Query: 496 VLITGGGRGIGRQLAREFAERGARKIVLWGRTEKCLKETTEEIR-----QMGTECHYFIC 660
V+ITG G+G++ A+ F GA K+VL GR L+E E+ ++ T Y +
Sbjct: 55 VVITGATSGLGKECAKVFYAAGA-KLVLCGRNGGALEELIRELTASHATKVQTHKPYLVT 113
Query: 661 -DVGNREEVYQTAKAVREKVGDITILVNNAAVVHGKSLMDSDDDALLKSQHINTLGQFWT 837
D+ + + A + + G + ILVNNA + + ++MD+ D + N G
Sbjct: 114 FDLTDSGAIVAAAAEILQCFGYVDILVNNAGISYRGTIMDTTVDVDKRVMETNYFGPVAL 173
Query: 838 TKAFLPRMLELQNGHIVCLNSVLALSAIPGAIDYCTSKASAFAFMESL 981
TKA LP M++ + GHIV ++S+ +IP Y SK + AF + L
Sbjct: 174 TKALLPSMIKRRQGHIVAISSIQGKMSIPFRSAYAASKHATQAFFDCL 221
>ref|NP_116172.2| carbonyl reductase family member 4 [Homo sapiens].
Length = 237
Score = 72.8 bits (177), Expect = 5e-13
Identities = 46/160 (28%), Positives = 74/160 (46%)
Frame = +1
Query: 502 ITGGGRGIGRQLAREFAERGARKIVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREE 681
+ GG RGIGR +A+ A +G R V+ + L+ +G + F CDV +
Sbjct: 7 VFGGSRGIGRAVAQLMARKGYRLAVI----ARNLEGAKAAAGDLGGDHLAFSCDVAKEHD 62
Query: 682 VYQTAKAVREKVGDITILVNNAAVVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRM 861
V T + + + +G + LVN A + L+ + + ++ H N LG T KA + M
Sbjct: 63 VQNTFEELEKHLGRVNFLVNAAGINRDGLLVRTKTEDMVSQLHTNLLGSMLTCKAAMRTM 122
Query: 862 LELQNGHIVCLNSVLALSAIPGAIDYCTSKASAFAFMESL 981
++ Q G IV + S++ L G Y SK F +L
Sbjct: 123 IQQQGGSIVNVGSIVGLKGNSGQSVYSASKGGLVGFSRAL 162
>ref|NP_066284.2| dehydrogenase/reductase SDR family member 4 [Homo sapiens].
Length = 278
Score = 68.2 bits (165), Expect = 1e-11
Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 1/172 (0%)
Frame = +1
Query: 481 LSRENVLITGGGRGIGRQLAREFAERGARKIVLWGRTEKCLKETTEEIRQMGTECHYFIC 660
L+ + L+T GIG +AR A+ GA +V+ R ++ + + ++ G +C
Sbjct: 30 LANKVALVTASTDGIGFAIARRLAQDGAH-VVVSSRKQQNVDQAVATLQGEGLSVTGTVC 88
Query: 661 DVGNREEVYQTAKAVREKVGDITILVNNAAV-VHGKSLMDSDDDALLKSQHINTLGQFWT 837
VG E+ + + G I ILV+NAAV S+MD ++ K+ IN
Sbjct: 89 HVGKAEDRERLVATAVKLHGGIDILVSNAAVNPFFGSIMDVTEEVWDKTLDINVKAPALM 148
Query: 838 TKAFLPRMLELQNGHIVCLNSVLALSAIPGAIDYCTSKASAFAFMESLTLGL 993
TKA +P M + G +V ++S+ A S PG Y SK + ++L + L
Sbjct: 149 TKAVVPEMEKRGGGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLTKTLAIEL 200
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,910,180
Number of extensions: 1525254
Number of successful extensions: 8264
Number of sequences better than 1.0e-05: 38
Number of HSP's gapped: 8069
Number of HSP's successfully gapped: 38
Length of query: 365
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 261
Effective length of database: 14,868,908
Effective search space: 3880784988
Effective search space used: 3880784988
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012649
(1095 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 470 e-130
>Sscrofa_Chr06
|| Length = 157765593
Score = 470 bits (237), Expect = e-130
Identities = 240/241 (99%)
Strand = Plus / Minus
Query: 834 gaccaccaaggccttcttgccgcggatgctggagctgcaaaacggccacatcgtgtgtct 893
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 66693905 gaccaccaaggccttcttgccgcggatgctggagctgcagaacggccacatcgtgtgtct 66693846
Query: 894 caactccgtgctggcgctttctgccatccccggtgccatcgactactgcacgtccaaggc 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66693845 caactccgtgctggcgctttctgccatccccggtgccatcgactactgcacgtccaaggc 66693786
Query: 954 ctcagccttcgccttcatggagagcctgaccctggggctgctggactgtccgggggtcag 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66693785 ctcagccttcgccttcatggagagcctgaccctggggctgctggactgtccgggggtcag 66693726
Query: 1014 cgccaccaccgtgctgcctttccacaccagcaccgagatgtttcagggcatgagggtcag 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66693725 cgccaccaccgtgctgcctttccacaccagcaccgagatgtttcagggcatgagggtcag 66693666
Query: 1074 g 1074
|
Sbjct: 66693665 g 66693665
Score = 295 bits (149), Expect = 3e-77
Identities = 149/149 (100%)
Strand = Plus / Minus
Query: 569 agattgttctctggggccggactgagaaatgcctgaaggagacgacggaggagattcggc 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66695504 agattgttctctggggccggactgagaaatgcctgaaggagacgacggaggagattcggc 66695445
Query: 629 agatgggcaccgagtgccactacttcatctgcgacgtgggcaaccgggaagaggtgtacc 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66695444 agatgggcaccgagtgccactacttcatctgcgacgtgggcaaccgggaagaggtgtacc 66695385
Query: 689 agacggccaaagctgtccgggagaaggtg 717
|||||||||||||||||||||||||||||
Sbjct: 66695384 agacggccaaagctgtccgggagaaggtg 66695356
Score = 242 bits (122), Expect = 3e-61
Identities = 122/122 (100%)
Strand = Plus / Minus
Query: 713 aggtgggtgacatcaccatcctggtgaacaatgccgctgtggtccatgggaagagtctga 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66694386 aggtgggtgacatcaccatcctggtgaacaatgccgctgtggtccatgggaagagtctga 66694327
Query: 773 tggacagtgatgacgatgcccttctcaagtcccagcatatcaacaccctgggccagttct 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66694326 tggacagtgatgacgatgcccttctcaagtcccagcatatcaacaccctgggccagttct 66694267
Query: 833 gg 834
||
Sbjct: 66694266 gg 66694265
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,959,493
Number of extensions: 129
Number of successful extensions: 129
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 3
Length of query: 1095
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1074
Effective length of database: 2,808,413,156
Effective search space: 3016235729544
Effective search space used: 3016235729544
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)