Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012651
(1322 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776605.2| short-chain dehydrogenase/reductase 3 [Bos taur... 588 e-168
Alignment gi|XP_002683810.1| PREDICTED: dehydrogenase/reductase (SDR fami... 339 4e-93
Alignment gi|NP_001192862.1| epidermal retinol dehydrogenase 2 [Bos tauru... 191 2e-48
Alignment gi|XP_002692702.1| PREDICTED: short chain dehydrogenase/reducta... 191 2e-48
Alignment gi|NP_001039751.1| estradiol 17-beta-dehydrogenase 11 [Bos taur... 186 4e-47
Alignment gi|NP_777159.1| retinol dehydrogenase 10 [Bos taurus]. 186 5e-47
Alignment gi|NP_001093177.1| short-chain dehydrogenase/reductase family 1... 181 1e-45
Alignment gi|NP_001040081.1| 17-beta-hydroxysteroid dehydrogenase 13 [Bos... 179 5e-45
Alignment gi|XP_002683809.1| PREDICTED: dehydrogenase/reductase (SDR fami... 124 2e-28
Alignment gi|NP_001030420.1| dehydrogenase/reductase SDR family member 7B... 84 2e-16
>ref|NP_776605.2| short-chain dehydrogenase/reductase 3 [Bos taurus].
Length = 302
Score = 588 bits (1515), Expect = e-168
Identities = 294/302 (97%), Positives = 297/302 (98%)
Frame = +2
Query: 407 MVWKWLGALVVFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAE 586
MVWK LGALVVFPLQMIYLVVKAA+GLVLPAKLRDLSRENVLITGGGRGIGRQLA EFAE
Sbjct: 1 MVWKRLGALVVFPLQMIYLVVKAAVGLVLPAKLRDLSRENVLITGGGRGIGRQLALEFAE 60
Query: 587 RGARKIVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITIL 766
RGARKIVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITIL
Sbjct: 61 RGARKIVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITIL 120
Query: 767 VNNAAVVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALS 946
VNNAAVVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALS
Sbjct: 121 VNNAAVVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALS 180
Query: 947 AIPGAIDYCTSKASAFAFMESLTLGLLDCPGVSATTVLPFHTSTEMFQGMRVRFPNLFPP 1126
AIPGAIDYCTSKASAFAFMESLTLGLLDCPGVSATTVLPFHTSTEMFQGMRVRFPNLFPP
Sbjct: 181 AIPGAIDYCTSKASAFAFMESLTLGLLDCPGVSATTVLPFHTSTEMFQGMRVRFPNLFPP 240
Query: 1127 LKPETVARKTVEAVQLNQTLLLPPWTMHVLIILKSILPQAALEEIHRFSGTYTCMNTFKG 1306
LKPETVAR+TVEAVQLNQ LLL PWTMH LIILKSILPQAALEEIH+FSGTYTCMNTFKG
Sbjct: 241 LKPETVARRTVEAVQLNQALLLLPWTMHALIILKSILPQAALEEIHKFSGTYTCMNTFKG 300
Query: 1307 RT 1312
RT
Sbjct: 301 RT 302
>ref|XP_002683810.1| PREDICTED: dehydrogenase/reductase (SDR family) member 3-like,
partial [Bos taurus].
Length = 171
Score = 339 bits (869), Expect = 4e-93
Identities = 167/167 (100%), Positives = 167/167 (100%)
Frame = +2
Query: 602 IVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAA 781
IVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAA
Sbjct: 5 IVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAA 64
Query: 782 VVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGA 961
VVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGA
Sbjct: 65 VVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGA 124
Query: 962 IDYCTSKASAFAFMESLTLGLLDCPGVSATTVLPFHTSTEMFQGMRV 1102
IDYCTSKASAFAFMESLTLGLLDCPGVSATTVLPFHTSTEMFQGMRV
Sbjct: 125 IDYCTSKASAFAFMESLTLGLLDCPGVSATTVLPFHTSTEMFQGMRV 171
>ref|NP_001192862.1| epidermal retinol dehydrogenase 2 [Bos taurus].
Length = 309
Score = 191 bits (484), Expect = 2e-48
Identities = 105/295 (35%), Positives = 166/295 (56%), Gaps = 3/295 (1%)
Frame = +2
Query: 431 LVVFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVL 610
L++F + + +V+A + +++P ++++ E VLITG G G+GR LA +FA+ G+ +VL
Sbjct: 11 LLIFLGKSVLALVEAVVFVIIPKPRKNVAGEIVLITGAGSGLGRLLALKFAQLGS-VLVL 69
Query: 611 WGRTEKCLKETTEEIRQMG-TECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAAVV 787
W +++ +ET + + G T + + CD +EE+Y+ A V+++VGD +IL+NNA +V
Sbjct: 70 WDISQESNEETCKMAVEAGATRVYAYTCDCSRKEEIYRVANQVKKEVGDASILINNAGIV 129
Query: 788 HGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAID 967
G+ MD D+ + KS +N WT KAFLP M+ GH+VC++S L + G D
Sbjct: 130 TGRKFMDCPDELIEKSLDVNFKSHIWTYKAFLPAMIANNRGHLVCISSSAGLIGMNGLAD 189
Query: 968 YCTSKASAFAFMESLTLGLL--DCPGVSATTVLPFHTSTEMFQGMRVRFPNLFPPLKPET 1141
YC SK +A+ F ES+ L G+ T V PF T MF G P+L P L+PE
Sbjct: 190 YCASKFAAYGFAESIFLESFTKGQNGIKTTIVCPFFIKTGMFDGCTTGCPSLLPILEPEY 249
Query: 1142 VARKTVEAVQLNQTLLLPPWTMHVLIILKSILPQAALEEIHRFSGTYTCMNTFKG 1306
RK V+A+ L P ++ ++ LKS LP + + G + M+ F G
Sbjct: 250 AVRKIVDAILQENMYLYMPKFIYFIVFLKSFLPLKLGLLLGEYLGAFNLMDGFTG 304
>ref|XP_002692702.1| PREDICTED: short chain dehydrogenase/reductase family 16C, member
5-like [Bos taurus].
Length = 309
Score = 191 bits (484), Expect = 2e-48
Identities = 105/295 (35%), Positives = 166/295 (56%), Gaps = 3/295 (1%)
Frame = +2
Query: 431 LVVFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVL 610
L++F + + +V+A + +++P ++++ E VLITG G G+GR LA +FA+ G+ +VL
Sbjct: 11 LLIFLGKSVLALVEAVVFVIIPKPRKNVAGEIVLITGAGSGLGRLLALKFAQLGS-VLVL 69
Query: 611 WGRTEKCLKETTEEIRQMG-TECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAAVV 787
W +++ +ET + + G T + + CD +EE+Y+ A V+++VGD +IL+NNA +V
Sbjct: 70 WDISQESNEETCKMAVEAGATRVYAYTCDCSRKEEIYRVANQVKKEVGDASILINNAGIV 129
Query: 788 HGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAID 967
G+ MD D+ + KS +N WT KAFLP M+ GH+VC++S L + G D
Sbjct: 130 TGRKFMDCPDELIEKSLDVNFKSHIWTYKAFLPAMIANNRGHLVCISSSAGLIGMNGLAD 189
Query: 968 YCTSKASAFAFMESLTLGLL--DCPGVSATTVLPFHTSTEMFQGMRVRFPNLFPPLKPET 1141
YC SK +A+ F ES+ L G+ T V PF T MF G P+L P L+PE
Sbjct: 190 YCASKFAAYGFAESIFLESFTKGQNGIKTTIVCPFFIKTGMFDGCTTGCPSLLPILEPEY 249
Query: 1142 VARKTVEAVQLNQTLLLPPWTMHVLIILKSILPQAALEEIHRFSGTYTCMNTFKG 1306
RK V+A+ L P ++ ++ LKS LP + + G + M+ F G
Sbjct: 250 AVRKIVDAILQENMYLYMPKFIYFIVFLKSFLPLKLGLLLGEYLGAFNLMDGFTG 304
>ref|NP_001039751.1| estradiol 17-beta-dehydrogenase 11 [Bos taurus].
Length = 316
Score = 186 bits (472), Expect = 4e-47
Identities = 101/286 (35%), Positives = 168/286 (58%), Gaps = 2/286 (0%)
Frame = +2
Query: 392 SAARRMVWKWLGALVVFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLA 571
S ++ + +L + ++ P ++ +V++ + L +P K + ++ E VLITG G GIGRQ A
Sbjct: 11 SQQQKRIQFFLASFLLLPFLLV-CIVESLLKLFIPKKRKSVTGEIVLITGAGHGIGRQTA 69
Query: 572 REFAERGARKIVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVG 751
EFA+ K+VLW + L+ET E +++G + H F+ D NRE++Y +AK V+ +VG
Sbjct: 70 YEFAKLKC-KLVLWDINKHGLEETATECKRLGAKAHTFVVDCSNREDIYSSAKKVKAEVG 128
Query: 752 DITILVNNAAVVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNS 931
D++ILVNNA VV+ L + D + K+ +N L FWTTKAFLP M++ +GHIV + S
Sbjct: 129 DVSILVNNAGVVYTSDLFATQDPQIEKTFEVNILAHFWTTKAFLPEMMKNNHGHIVTVAS 188
Query: 932 VLALSAIPGAIDYCTSKASAFAFMESLT--LGLLDCPGVSATTVLPFHTSTEMFQGMRVR 1105
+ +P + YC+SK +A F ++LT L L GV T + P +T +
Sbjct: 189 AAGHTGVPFLLAYCSSKFAAVGFHKALTEELSALKRTGVKTTCLCPNFINTGFIKNPST- 247
Query: 1106 FPNLFPPLKPETVARKTVEAVQLNQTLLLPPWTMHVLIILKSILPQ 1243
+L P L+PE V K ++ + Q ++ P +++ L +++ +LP+
Sbjct: 248 --SLGPTLEPEEVVNKLIDGILTEQKMIFVPSSLNFLSLMEKVLPE 291
>ref|NP_777159.1| retinol dehydrogenase 10 [Bos taurus].
Length = 341
Score = 186 bits (471), Expect = 5e-47
Identities = 111/317 (35%), Positives = 169/317 (53%), Gaps = 29/317 (9%)
Frame = +2
Query: 437 VFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVLWG 616
V ++++ V AA ++ K + ++ + LITG G G+GR A EFA R A +VLW
Sbjct: 9 VVTFKVLWAFVLAAARWLVRPKEKSVAGQVCLITGAGSGLGRLFALEFARRRAL-LVLWD 67
Query: 617 RTEKCLKETTEEIRQM-------------------------GTECHYFICDVGNREEVYQ 721
+ +ET +R + + + CDVG RE VY
Sbjct: 68 INTQSNEETAGMVRHIYRDLEAADAAALQAGNGEEEILPHCNLQVFTYTCDVGKRENVYL 127
Query: 722 TAKAVREKVGDITILVNNAAVVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLEL 901
TA+ VR++VG++++LVNNA VV G L++ D+ + ++ +N FWTTKAFLP MLE+
Sbjct: 128 TAERVRKEVGEVSVLVNNAGVVSGHHLLECPDELIERTMMVNCHAHFWTTKAFLPTMLEI 187
Query: 902 QNGHIVCLNSVLALSAIPGAIDYCTSKASAFAFMESLT--LGLLDCPGVSATTVLPFHTS 1075
+GHIV + S L L + G DYC SK F ESL+ L + G+ T V P+
Sbjct: 188 NHGHIVTVASSLGLFSTAGVEDYCASKFGVVGFHESLSHELKAAEKDGIKTTLVCPYLVD 247
Query: 1076 TEMFQGMRVR--FPNLFPPLKPETVARKTVEAVQLNQTLLLPPWTMHVLIILKSILPQAA 1249
T MF+G R+R PPLKP+ ++ ++A+ +Q ++ P M+++ +KSILP A
Sbjct: 248 TGMFRGCRIRKEIEPFLPPLKPDYCVKQAMKAILTDQPMICTPRLMYIVTFMKSILPFEA 307
Query: 1250 LEEIHRFSGTYTCMNTF 1300
+ ++RF G CM F
Sbjct: 308 VVCMYRFLGADKCMYPF 324
>ref|NP_001093177.1| short-chain dehydrogenase/reductase family 16C member 6 [Bos taurus].
Length = 316
Score = 181 bits (459), Expect = 1e-45
Identities = 103/291 (35%), Positives = 162/291 (55%), Gaps = 3/291 (1%)
Frame = +2
Query: 437 VFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVLWG 616
+F + +Y +++ ++P K +D++ E VLITG G+GR LA +FA GA +VLW
Sbjct: 9 IFLGKFLYYFLESLYYKIIPKKKKDVTGEIVLITGAASGLGRLLAIKFASLGAI-LVLWD 67
Query: 617 RTEKCLKETTEEIRQ-MGTECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAAVVHG 793
E+ ET I++ + + CD NR++VY+ A V+++VG++TIL+NNA VV G
Sbjct: 68 INEEGNMETCRIIKEERDAKVFAYTCDCSNRQDVYRVADQVKKEVGNVTILINNAGVVTG 127
Query: 794 KSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAIDYC 973
+ + + D + +S +N + FWT KAFLP MLE +GH+VC++S + I DYC
Sbjct: 128 REFLKTPDHMVERSFLVNVMSHFWTYKAFLPAMLEANHGHLVCISSFAGIVGINELSDYC 187
Query: 974 TSKASAFAFMESL--TLGLLDCPGVSATTVLPFHTSTEMFQGMRVRFPNLFPPLKPETVA 1147
SK +A+ F ESL L LL ++ T V P+ T MF+G ++P L P L E A
Sbjct: 188 ASKFAAYGFAESLHFELKLLQKSKINTTIVCPYFIKTGMFEGCSTKYPLLLPMLTQEYAA 247
Query: 1148 RKTVEAVQLNQTLLLPPWTMHVLIILKSILPQAALEEIHRFSGTYTCMNTF 1300
+ + A+ Q L+ P HV + LK I+ + + + G + +F
Sbjct: 248 QSILNAILEEQLYLIMPRFSHVALFLKQIISTNMMMTMAEYLGMDISLASF 298
>ref|NP_001040081.1| 17-beta-hydroxysteroid dehydrogenase 13 [Bos taurus].
Length = 300
Score = 179 bits (454), Expect = 5e-45
Identities = 95/280 (33%), Positives = 163/280 (58%), Gaps = 2/280 (0%)
Frame = +2
Query: 431 LVVFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVL 610
L++ L +IY +++ + + +P + + ++ E VLITG G GIGRQ A EFA+R +R +VL
Sbjct: 7 LLLLLLIIIYSYLESLVKVFIPRRRKSVAGEIVLITGAGHGIGRQTAYEFAKRKSR-LVL 65
Query: 611 WGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAAVVH 790
W + ++ET E R++G H F+ D NREE+Y + V+++VGD+TI+VNNA ++
Sbjct: 66 WDINKHGVEETAAECRKLGATTHVFVVDCSNREEIYSSVNQVKKEVGDVTIVVNNAGAIY 125
Query: 791 GKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAIDY 970
L+ + D+ + K+ +N LG FW TKA LP M+ +GHIV + SV IP I Y
Sbjct: 126 PADLLSTKDEEITKTFEVNILGHFWITKALLPSMIRRNHGHIVTVASVCGHGVIPYLIPY 185
Query: 971 CTSKASAFAFMESLT--LGLLDCPGVSATTVLPFHTSTEMFQGMRVRFPNLFPPLKPETV 1144
C+SK +A F +LT L L G+ + + P +T + R ++P L+ + V
Sbjct: 186 CSSKFAAVGFHRALTSELEALGKTGIKTSCLCPVFVNTGFTKNPSTR---IWPVLETDKV 242
Query: 1145 ARKTVEAVQLNQTLLLPPWTMHVLIILKSILPQAALEEIH 1264
R ++ + ++ ++ P +++ + ++ LP+ A+ I+
Sbjct: 243 VRSLIDGILTDKKMIFVPSYINISLTIERFLPERAVAAIN 282
>ref|XP_002683809.1| PREDICTED: dehydrogenase/reductase (SDR family) member 3-like [Bos
taurus].
Length = 83
Score = 124 bits (311), Expect = 2e-28
Identities = 63/65 (96%), Positives = 64/65 (98%)
Frame = +2
Query: 407 MVWKWLGALVVFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAE 586
MVWK LGALVVFPLQMIYLVVKAA+GLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAE
Sbjct: 1 MVWKRLGALVVFPLQMIYLVVKAAVGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAE 60
Query: 587 RGARK 601
RGARK
Sbjct: 61 RGARK 65
>ref|NP_001030420.1| dehydrogenase/reductase SDR family member 7B [Bos taurus].
Length = 325
Score = 84.3 bits (207), Expect = 2e-16
Identities = 62/238 (26%), Positives = 114/238 (47%), Gaps = 7/238 (2%)
Frame = +2
Query: 392 SAARRMVWKWLGALVVFPLQMIYLVVKAAIGLVLPAKLRDLSRENVL-ITGGGRGIGRQL 568
S R V ++ + + PL + + + + L+ ++R R V+ ITG G+GR+
Sbjct: 9 SLLRARVMDFITSTAILPLLLGCVGLFSLFKLLQWLRMRAYVRNAVVVITGATSGLGREC 68
Query: 569 AREFAERGARKIVLWGRTEKCLKETTEEI---RQMGTECHY---FICDVGNREEVYQTAK 730
AR F GAR +VL GR + L+E ++E+ R G + H D+ + + A
Sbjct: 69 ARVFHAAGAR-LVLCGRNAEALEELSQELAASRAPGVQTHKPCTVTFDLADPGAIAGAAS 127
Query: 731 AVREKVGDITILVNNAAVVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNG 910
+ + G + +L+NNA + + +++D+ D + N G TKA LP M+ + G
Sbjct: 128 EILQCFGHVDVLINNAGISYRGAIVDTSPDVDKRVMETNYFGPVALTKALLPAMIRRRQG 187
Query: 911 HIVCLNSVLALSAIPGAIDYCTSKASAFAFMESLTLGLLDCPGVSATTVLPFHTSTEM 1084
H+V ++S+ ++P Y SK + AF + L ++ + T + P + T +
Sbjct: 188 HVVAISSIQGKISLPFRSAYAASKHATQAFFDCLR-AEVEQHDIEVTVISPGYIHTNL 244
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 55,478,538
Number of extensions: 1782903
Number of successful extensions: 9215
Number of sequences better than 1.0e-05: 39
Number of HSP's gapped: 9050
Number of HSP's successfully gapped: 39
Length of query: 440
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 335
Effective length of database: 14,207,134
Effective search space: 4759389890
Effective search space used: 4759389890
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012651
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012651
(1322 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_544561.2| PREDICTED: similar to dehydrogenase/reductase (... 591 e-169
Alignment gi|XP_850000.1| PREDICTED: similar to hydroxysteroid (17-beta) ... 194 2e-49
Alignment gi|XP_860039.1| PREDICTED: similar to retinol dehydrogenase 10 ... 194 2e-49
Alignment gi|XP_544127.2| PREDICTED: similar to retinol dehydrogenase 10 ... 192 5e-49
Alignment gi|XP_860108.1| PREDICTED: similar to retinol dehydrogenase 10 ... 188 1e-47
Alignment gi|XP_535646.2| PREDICTED: similar to alcohol dehydrogenase PAN... 186 6e-47
Alignment gi|XP_849875.1| PREDICTED: similar to retinol dehydrogenase 10 ... 186 6e-47
Alignment gi|XP_535080.2| PREDICTED: similar to epidermal retinal dehydro... 184 2e-46
Alignment gi|XP_544970.2| PREDICTED: similar to dehydrogenase/reductase (... 174 1e-43
Alignment gi|XP_860425.1| PREDICTED: similar to hydroxysteroid (17-beta) ... 145 8e-35
>ref|XP_544561.2| PREDICTED: similar to dehydrogenase/reductase (SDR family) member 3
[Canis familiaris].
Length = 302
Score = 591 bits (1524), Expect = e-169
Identities = 294/302 (97%), Positives = 297/302 (98%)
Frame = +2
Query: 407 MVWKWLGALVVFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAE 586
MVWKWLGALV FPLQ+IYLV KAA+GLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAE
Sbjct: 1 MVWKWLGALVGFPLQIIYLVAKAAVGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAE 60
Query: 587 RGARKIVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITIL 766
RGARKIVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITIL
Sbjct: 61 RGARKIVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITIL 120
Query: 767 VNNAAVVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALS 946
VNNAAVVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALS
Sbjct: 121 VNNAAVVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALS 180
Query: 947 AIPGAIDYCTSKASAFAFMESLTLGLLDCPGVSATTVLPFHTSTEMFQGMRVRFPNLFPP 1126
AIPGAIDYCTSKASAFAFMESLTLGLLDCPGVSATTVLPFHTSTEMFQGMRVRFPNLFPP
Sbjct: 181 AIPGAIDYCTSKASAFAFMESLTLGLLDCPGVSATTVLPFHTSTEMFQGMRVRFPNLFPP 240
Query: 1127 LKPETVARKTVEAVQLNQTLLLPPWTMHVLIILKSILPQAALEEIHRFSGTYTCMNTFKG 1306
LKPETVAR+TVEAVQLNQ LLL PWTMH LIILKSILPQAALEEIHRFSGTYTCMNTFKG
Sbjct: 241 LKPETVARRTVEAVQLNQALLLLPWTMHALIILKSILPQAALEEIHRFSGTYTCMNTFKG 300
Query: 1307 RT 1312
RT
Sbjct: 301 RT 302
>ref|XP_850000.1| PREDICTED: similar to hydroxysteroid (17-beta) dehydrogenase 13
isoform 2 [Canis familiaris].
Length = 300
Score = 194 bits (493), Expect = 2e-49
Identities = 107/280 (38%), Positives = 166/280 (59%), Gaps = 2/280 (0%)
Frame = +2
Query: 431 LVVFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVL 610
L++ L +IY ++A + + P K + ++ E VLITG G GIGR A EFA++ +R +VL
Sbjct: 7 LLLLLLTIIYSYLEALVKVFFPRKRKSVAGEIVLITGAGHGIGRWTAYEFAKQKSR-LVL 65
Query: 611 WGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAAVVH 790
W + ++ET E R++G H F+ D GNRE++Y + K V+++VGD+TILVNNA V+
Sbjct: 66 WDINKHGVEETAAECRKLGATVHTFVVDCGNREDIYNSVKQVKKEVGDVTILVNNAGTVY 125
Query: 791 GKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAIDY 970
L+ + D+ + K+ IN LG FW TKA LP M++ +GHIV + SV IP I Y
Sbjct: 126 PADLLSTKDEEITKTFEINILGHFWITKALLPSMIKRNHGHIVTVASVCGHGVIPYLIPY 185
Query: 971 CTSKASAFAFMESLTLGL--LDCPGVSATTVLPFHTSTEMFQGMRVRFPNLFPPLKPETV 1144
C+SK +A F +LTL L L G+ + + P +T + R L+P L+ +TV
Sbjct: 186 CSSKFAAVGFHRALTLELQTLGITGIKTSCLCPVFVNTGFTKNPSTR---LWPILETDTV 242
Query: 1145 ARKTVEAVQLNQTLLLPPWTMHVLIILKSILPQAALEEIH 1264
AR ++ + N+ ++ P ++ +IL LP+ AL I+
Sbjct: 243 ARSLIDGILTNKKMIFVPSYYNIYLILDKFLPERALAAIN 282
>ref|XP_860039.1| PREDICTED: similar to retinol dehydrogenase 10 isoform 3 [Canis
familiaris].
Length = 321
Score = 194 bits (492), Expect = 2e-49
Identities = 111/297 (37%), Positives = 169/297 (56%), Gaps = 9/297 (3%)
Frame = +2
Query: 437 VFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVLWG 616
V ++++ V AA ++ K + ++ + LITG G G+GR A EFA R A +VLW
Sbjct: 9 VVTFKVLWAFVLAAARWLVRPKEKSVAGQVCLITGAGSGLGRLFALEFARRRAL-LVLWD 67
Query: 617 RTEKCLKETTEEIRQM-----GTECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAA 781
+ +ET +R + + + CDVG RE VY TA+ VR++VG++++LVNNA
Sbjct: 68 INTQSNEETAGMVRHIYRDLEAADVFTYTCDVGKRENVYLTAERVRKEVGEVSVLVNNAG 127
Query: 782 VVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGA 961
VV G L++ D+ + ++ +N FWTTKAFLP MLE+ +GHIV + S L L + G
Sbjct: 128 VVSGHHLLECPDELIERTMMVNCHAHFWTTKAFLPTMLEINHGHIVTVASSLGLFSTAGV 187
Query: 962 IDYCTSKASAFAFMESLT--LGLLDCPGVSATTVLPFHTSTEMFQGMRVR--FPNLFPPL 1129
DYC SK F ESL+ L + G+ T V P+ T MF+G R+R PPL
Sbjct: 188 EDYCASKFGVVGFHESLSHELKAAEKDGIKTTLVCPYLVDTGMFRGCRIRKEIEPFLPPL 247
Query: 1130 KPETVARKTVEAVQLNQTLLLPPWTMHVLIILKSILPQAALEEIHRFSGTYTCMNTF 1300
KP+ ++ ++A+ +Q ++ P M+++ +KSILP A+ ++RF G CM F
Sbjct: 248 KPDYCVKQAMKAILTDQPMICTPRLMYIVTFMKSILPFEAVVCMYRFLGADKCMYPF 304
>ref|XP_544127.2| PREDICTED: similar to retinol dehydrogenase 10 isoform 1 [Canis
familiaris].
Length = 319
Score = 192 bits (489), Expect = 5e-49
Identities = 111/295 (37%), Positives = 168/295 (56%), Gaps = 7/295 (2%)
Frame = +2
Query: 437 VFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVLWG 616
V ++++ V AA ++ K + ++ + LITG G G+GR A EFA R A +VLW
Sbjct: 9 VVTFKVLWAFVLAAARWLVRPKEKSVAGQVCLITGAGSGLGRLFALEFARRRAL-LVLWD 67
Query: 617 RTEKCLKETT---EEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAAVV 787
+ +ET E + + + CDVG RE VY TA+ VR++VG++++LVNNA VV
Sbjct: 68 INTQSNEETAGMEEILPHCNLQVFTYTCDVGKRENVYLTAERVRKEVGEVSVLVNNAGVV 127
Query: 788 HGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAID 967
G L++ D+ + ++ +N FWTTKAFLP MLE+ +GHIV + S L L + G D
Sbjct: 128 SGHHLLECPDELIERTMMVNCHAHFWTTKAFLPTMLEINHGHIVTVASSLGLFSTAGVED 187
Query: 968 YCTSKASAFAFMESLT--LGLLDCPGVSATTVLPFHTSTEMFQGMRVR--FPNLFPPLKP 1135
YC SK F ESL+ L + G+ T V P+ T MF+G R+R PPLKP
Sbjct: 188 YCASKFGVVGFHESLSHELKAAEKDGIKTTLVCPYLVDTGMFRGCRIRKEIEPFLPPLKP 247
Query: 1136 ETVARKTVEAVQLNQTLLLPPWTMHVLIILKSILPQAALEEIHRFSGTYTCMNTF 1300
+ ++ ++A+ +Q ++ P M+++ +KSILP A+ ++RF G CM F
Sbjct: 248 DYCVKQAMKAILTDQPMICTPRLMYIVTFMKSILPFEAVVCMYRFLGADKCMYPF 302
>ref|XP_860108.1| PREDICTED: similar to retinol dehydrogenase 10 isoform 4 [Canis
familiaris].
Length = 336
Score = 188 bits (477), Expect = 1e-47
Identities = 113/312 (36%), Positives = 171/312 (54%), Gaps = 24/312 (7%)
Frame = +2
Query: 437 VFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVLWG 616
V ++++ V AA ++ K + ++ + LITG G G+GR A EFA R A +VLW
Sbjct: 9 VVTFKVLWAFVLAAARWLVRPKEKSVAGQVCLITGAGSGLGRLFALEFARRRAL-LVLWD 67
Query: 617 RTEKCLKETTEEIR----------------QMGTECHY----FICDVGNREEVYQTAKAV 736
+ +ET +R Q+ C+ + CDVG RE VY TA+ V
Sbjct: 68 INTQSNEETAGMVRHIYRDLEPSPGGPDPRQILPHCNLQVFTYTCDVGKRENVYLTAERV 127
Query: 737 REKVGDITILVNNAAVVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHI 916
R++VG++++LVNNA VV G L++ D+ + ++ +N FWTTKAFLP MLE+ +GHI
Sbjct: 128 RKEVGEVSVLVNNAGVVSGHHLLECPDELIERTMMVNCHAHFWTTKAFLPTMLEINHGHI 187
Query: 917 VCLNSVLALSAIPGAIDYCTSKASAFAFMESLT--LGLLDCPGVSATTVLPFHTSTEMFQ 1090
V + S L L + G DYC SK F ESL+ L + G+ T V P+ T MF+
Sbjct: 188 VTVASSLGLFSTAGVEDYCASKFGVVGFHESLSHELKAAEKDGIKTTLVCPYLVDTGMFR 247
Query: 1091 GMRVR--FPNLFPPLKPETVARKTVEAVQLNQTLLLPPWTMHVLIILKSILPQAALEEIH 1264
G R+R PPLKP+ ++ ++A+ +Q ++ P M+++ +KSILP A+ ++
Sbjct: 248 GCRIRKEIEPFLPPLKPDYCVKQAMKAILTDQPMICTPRLMYIVTFMKSILPFEAVVCMY 307
Query: 1265 RFSGTYTCMNTF 1300
RF G CM F
Sbjct: 308 RFLGADKCMYPF 319
>ref|XP_535646.2| PREDICTED: similar to alcohol dehydrogenase PAN1B-like isoform 1
[Canis familiaris].
Length = 271
Score = 186 bits (471), Expect = 6e-47
Identities = 102/267 (38%), Positives = 159/267 (59%), Gaps = 2/267 (0%)
Frame = +2
Query: 431 LVVFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVL 610
L++ L +IY ++A + + P K + ++ E VLITG G GIGR A EFA++ +R +VL
Sbjct: 7 LLLLLLTIIYSYLEALVKVFFPRKRKSVAGEIVLITGAGHGIGRWTAYEFAKQKSR-LVL 65
Query: 611 WGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAAVVH 790
W + ++ET E R++G H F+ D GNRE++Y + K V+++VGD+TILVNNA V+
Sbjct: 66 WDINKHGVEETAAECRKLGATVHTFVVDCGNREDIYNSVKQVKKEVGDVTILVNNAGTVY 125
Query: 791 GKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAIDY 970
L+ + D+ + K+ IN LG FW TKA LP M++ +GHIV + SV IP I Y
Sbjct: 126 PADLLSTKDEEITKTFEINILGHFWITKALLPSMIKRNHGHIVTVASVCGHGVIPYLIPY 185
Query: 971 CTSKASAFAFMESLTLGL--LDCPGVSATTVLPFHTSTEMFQGMRVRFPNLFPPLKPETV 1144
C+SK +A F +LTL L L G+ + + P +T + R L+P L+ +TV
Sbjct: 186 CSSKFAAVGFHRALTLELQTLGITGIKTSCLCPVFVNTGFTKNPSTR---LWPILETDTV 242
Query: 1145 ARKTVEAVQLNQTLLLPPWTMHVLIIL 1225
AR ++ + N+ ++ P ++ +IL
Sbjct: 243 ARSLIDGILTNKKMIFVPSYYNIYLIL 269
>ref|XP_849875.1| PREDICTED: similar to retinol dehydrogenase 10 isoform 2 [Canis
familiaris].
Length = 341
Score = 186 bits (471), Expect = 6e-47
Identities = 111/317 (35%), Positives = 169/317 (53%), Gaps = 29/317 (9%)
Frame = +2
Query: 437 VFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVLWG 616
V ++++ V AA ++ K + ++ + LITG G G+GR A EFA R A +VLW
Sbjct: 9 VVTFKVLWAFVLAAARWLVRPKEKSVAGQVCLITGAGSGLGRLFALEFARRRAL-LVLWD 67
Query: 617 RTEKCLKETTEEIRQM-------------------------GTECHYFICDVGNREEVYQ 721
+ +ET +R + + + CDVG RE VY
Sbjct: 68 INTQSNEETAGMVRHIYRDLEAADAAALQAGNGEEEILPHCNLQVFTYTCDVGKRENVYL 127
Query: 722 TAKAVREKVGDITILVNNAAVVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLEL 901
TA+ VR++VG++++LVNNA VV G L++ D+ + ++ +N FWTTKAFLP MLE+
Sbjct: 128 TAERVRKEVGEVSVLVNNAGVVSGHHLLECPDELIERTMMVNCHAHFWTTKAFLPTMLEI 187
Query: 902 QNGHIVCLNSVLALSAIPGAIDYCTSKASAFAFMESLT--LGLLDCPGVSATTVLPFHTS 1075
+GHIV + S L L + G DYC SK F ESL+ L + G+ T V P+
Sbjct: 188 NHGHIVTVASSLGLFSTAGVEDYCASKFGVVGFHESLSHELKAAEKDGIKTTLVCPYLVD 247
Query: 1076 TEMFQGMRVR--FPNLFPPLKPETVARKTVEAVQLNQTLLLPPWTMHVLIILKSILPQAA 1249
T MF+G R+R PPLKP+ ++ ++A+ +Q ++ P M+++ +KSILP A
Sbjct: 248 TGMFRGCRIRKEIEPFLPPLKPDYCVKQAMKAILTDQPMICTPRLMYIVTFMKSILPFEA 307
Query: 1250 LEEIHRFSGTYTCMNTF 1300
+ ++RF G CM F
Sbjct: 308 VVCMYRFLGADKCMYPF 324
>ref|XP_535080.2| PREDICTED: similar to epidermal retinal dehydrogenase 2 [Canis
familiaris].
Length = 309
Score = 184 bits (467), Expect = 2e-46
Identities = 105/300 (35%), Positives = 167/300 (55%), Gaps = 3/300 (1%)
Frame = +2
Query: 431 LVVFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVL 610
LVVF + + +++ + ++P ++++ E VLITG G G+GR LA FA G+ +VL
Sbjct: 11 LVVFLGKSVIAFLESMVFTIIPKPRKNVAGEIVLITGAGSGLGRLLALRFARLGS-VLVL 69
Query: 611 WGRTEKCLKETTEEIRQMG-TECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAAVV 787
W ++ ++T R+ G T + + CD RE++Y+ A+ V+++VGDI+IL+NNA +V
Sbjct: 70 WDINKEGNEDTCRMAREAGATRVYAYTCDCSQREDIYRVAEQVKKEVGDISILINNAGIV 129
Query: 788 HGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAID 967
GK+ +D D+ + K+ +N WT K+FLP M+ +GH+VC++S L I D
Sbjct: 130 TGKNFLDCPDELMEKALDVNFKAHLWTCKSFLPAMIANNHGHLVCISSSAGLVGISKLAD 189
Query: 968 YCTSKASAFAFMESLTLGLL--DCPGVSATTVLPFHTSTEMFQGMRVRFPNLFPPLKPET 1141
YC SK +A F ES+ + G+ T V PF +T MF+G P L P L+PE
Sbjct: 190 YCASKFAALGFAESIFAETVVQKLNGIKTTIVCPFFINTGMFEGCSTVRPFLLPVLEPEY 249
Query: 1142 VARKTVEAVQLNQTLLLPPWTMHVLIILKSILPQAALEEIHRFSGTYTCMNTFKGRT*KQ 1321
V K V+A+ + L P + ++ LKSILP + + G M+ F G+ K+
Sbjct: 250 VVDKIVDAILQEKVYLYVPRFISFVMFLKSILPVKVSLLVADYMGALNIMDGFVGKNKKE 309
>ref|XP_544970.2| PREDICTED: similar to dehydrogenase/reductase (SDR family) member 8
[Canis familiaris].
Length = 300
Score = 174 bits (442), Expect = 1e-43
Identities = 102/285 (35%), Positives = 163/285 (57%), Gaps = 2/285 (0%)
Frame = +2
Query: 419 WLGALVVFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGAR 598
+L L PL +I+ +++ + L +P K + ++ E VLITG G GIGR A EFA+ +
Sbjct: 4 FLQCLQFLPLLIIF-TLESLLKLFIPKKRKSVTGEIVLITGAGHGIGRLTAYEFAKLKS- 61
Query: 599 KIVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITILVNNA 778
K+VLW + +++T E R++G + H F+ D NRE++Y +A V+ +VGD++ILVNNA
Sbjct: 62 KLVLWDINKHGIEDTAAECRRLGAKVHAFVVDCSNREDIYGSATKVKAEVGDVSILVNNA 121
Query: 779 AVVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPG 958
VV+ L + D + K+ +N L FWTTKAFLP M++ +GHIV + S + +P
Sbjct: 122 GVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPVMMKNNHGHIVTVASAAGHTGVPF 181
Query: 959 AIDYCTSKASAFAFMESLT--LGLLDCPGVSATTVLPFHTSTEMFQGMRVRFPNLFPPLK 1132
+ YC+SK +A F ++LT L L+ GV T + P +T + L P L+
Sbjct: 182 LLAYCSSKFAAVGFHKALTEELAALERTGVKTTCLCPNFINTGFIKNASTA---LGPILE 238
Query: 1133 PETVARKTVEAVQLNQTLLLPPWTMHVLIILKSILPQAALEEIHR 1267
PE V K + + Q ++ P ++ L +++ ILP+ L + R
Sbjct: 239 PEEVVDKLLNGILTEQKMIFIPSSICFLTVVEKILPERFLALLKR 283
>ref|XP_860425.1| PREDICTED: similar to hydroxysteroid (17-beta) dehydrogenase 13
isoform 3 [Canis familiaris].
Length = 264
Score = 145 bits (366), Expect = 8e-35
Identities = 94/280 (33%), Positives = 145/280 (51%), Gaps = 2/280 (0%)
Frame = +2
Query: 431 LVVFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVL 610
L++ L +IY ++A + + P K + ++ E VLITG G GIGR A EFA++ +R +VL
Sbjct: 7 LLLLLLTIIYSYLEALVKVFFPRKRKSVAGEIVLITGAGHGIGRWTAYEFAKQKSR-LVL 65
Query: 611 WGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAAVVH 790
W D+ V+++VGD+TILVNNA V+
Sbjct: 66 W--------------------------DINK----------VKKEVGDVTILVNNAGTVY 89
Query: 791 GKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAIDY 970
L+ + D+ + K+ IN LG FW TKA LP M++ +GHIV + SV IP I Y
Sbjct: 90 PADLLSTKDEEITKTFEINILGHFWITKALLPSMIKRNHGHIVTVASVCGHGVIPYLIPY 149
Query: 971 CTSKASAFAFMESLTLGL--LDCPGVSATTVLPFHTSTEMFQGMRVRFPNLFPPLKPETV 1144
C+SK +A F +LTL L L G+ + + P +T + R L+P L+ +TV
Sbjct: 150 CSSKFAAVGFHRALTLELQTLGITGIKTSCLCPVFVNTGFTKNPSTR---LWPILETDTV 206
Query: 1145 ARKTVEAVQLNQTLLLPPWTMHVLIILKSILPQAALEEIH 1264
AR ++ + N+ ++ P ++ +IL LP+ AL I+
Sbjct: 207 ARSLIDGILTNKKMIFVPSYYNIYLILDKFLPERALAAIN 246
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 57,908,650
Number of extensions: 1824377
Number of successful extensions: 9769
Number of sequences better than 1.0e-05: 46
Number of HSP's gapped: 9521
Number of HSP's successfully gapped: 47
Length of query: 440
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 334
Effective length of database: 15,340,888
Effective search space: 5123856592
Effective search space used: 5123856592
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012651
(1322 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127650.1| PREDICTED: short-chain dehydrogenase/reducta... 477 e-135
Alignment gi|NP_001182297.1| epidermal retinol dehydrogenase 2 [Sus scrof... 189 2e-48
Alignment gi|NP_001230551.1| hydroxysteroid (17-beta) dehydrogenase 13 [S... 179 3e-45
Alignment gi|XP_003129386.2| PREDICTED: estradiol 17-beta-dehydrogenase 1... 162 3e-40
Alignment gi|XP_003355103.1| PREDICTED: LOW QUALITY PROTEIN: short-chain ... 156 3e-38
Alignment gi|XP_001928117.2| PREDICTED: retinol dehydrogenase 10 [Sus scr... 85 1e-16
Alignment gi|XP_001928783.1| PREDICTED: dehydrogenase/reductase SDR famil... 84 2e-16
Alignment gi|XP_001927120.1| PREDICTED: carbonyl reductase family member ... 77 2e-14
Alignment gi|NP_999471.1| peroxisomal multifunctional enzyme type 2 [Sus ... 69 6e-12
Alignment gi|NP_001183950.1| hydroxysteroid dehydrogenase-like protein 2 ... 65 6e-11
>ref|XP_003127650.1| PREDICTED: short-chain dehydrogenase/reductase 3-like [Sus scrofa].
Length = 261
Score = 477 bits (1227), Expect = e-135
Identities = 236/241 (97%), Positives = 237/241 (98%)
Frame = +2
Query: 590 GARKIVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITILV 769
G IVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITILV
Sbjct: 21 GEASIVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITILV 80
Query: 770 NNAAVVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSA 949
NNAAVVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSA
Sbjct: 81 NNAAVVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSA 140
Query: 950 IPGAIDYCTSKASAFAFMESLTLGLLDCPGVSATTVLPFHTSTEMFQGMRVRFPNLFPPL 1129
IPGAIDYCTSKASAFAFMESLTLGLLDCPGVSATTVLPFHTSTEMFQGMRVRFPNLFPPL
Sbjct: 141 IPGAIDYCTSKASAFAFMESLTLGLLDCPGVSATTVLPFHTSTEMFQGMRVRFPNLFPPL 200
Query: 1130 KPETVARKTVEAVQLNQTLLLPPWTMHVLIILKSILPQAALEEIHRFSGTYTCMNTFKGR 1309
KPETVAR+TVEAVQLNQTLLL PWTMHVLIILKSILPQAALEEIHRFSGTYTCMNTFKGR
Sbjct: 201 KPETVARRTVEAVQLNQTLLLLPWTMHVLIILKSILPQAALEEIHRFSGTYTCMNTFKGR 260
Query: 1310 T 1312
T
Sbjct: 261 T 261
>ref|NP_001182297.1| epidermal retinol dehydrogenase 2 [Sus scrofa].
Length = 309
Score = 189 bits (481), Expect = 2e-48
Identities = 104/293 (35%), Positives = 165/293 (56%), Gaps = 3/293 (1%)
Frame = +2
Query: 431 LVVFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVL 610
L+VF + I +VV++ + +P + ++ E VLITG G G+GR LA +FA G+ +VL
Sbjct: 11 LLVFLGKSILVVVESLVFTFIPVPRKKVAGEIVLITGAGSGLGRLLALKFARLGS-VLVL 69
Query: 611 WGRTEKCLKETTEEIRQMGTECHY-FICDVGNREEVYQTAKAVREKVGDITILVNNAAVV 787
W ++ +ET + +++ G Y + CD RE+VY+ A V+++VGD++IL+NNA +V
Sbjct: 70 WDINQERNEETRKMVQEAGVAGAYAYTCDCSQREDVYRVASQVKKEVGDVSILINNAGIV 129
Query: 788 HGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAID 967
G+ +D D+ + KS +N WT KAFLP M+ +GH+VC++S L + G D
Sbjct: 130 TGRKFLDCPDELMEKSLDVNFKAHLWTYKAFLPAMIANDHGHLVCISSSAGLIGVYGLAD 189
Query: 968 YCTSKASAFAFMESLTLGLLDC--PGVSATTVLPFHTSTEMFQGMRVRFPNLFPPLKPET 1141
YC SK +AF F E++ G+ T V PF T+MF+G R + P L+PE
Sbjct: 190 YCASKFAAFGFAETVFFETFASKQKGIKTTIVCPFFIKTQMFEGCTSRLSYVLPILEPEY 249
Query: 1142 VARKTVEAVQLNQTLLLPPWTMHVLIILKSILPQAALEEIHRFSGTYTCMNTF 1300
K V+A+ Q L P +++++ LKS LP + + G + M+ F
Sbjct: 250 AVEKIVDAILKEQLYLYMPRFIYIMVFLKSFLPPKLGMLLAEYVGAFNFMDGF 302
>ref|NP_001230551.1| hydroxysteroid (17-beta) dehydrogenase 13 [Sus scrofa].
Length = 300
Score = 179 bits (454), Expect = 3e-45
Identities = 94/274 (34%), Positives = 161/274 (58%), Gaps = 2/274 (0%)
Frame = +2
Query: 452 MIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVLWGRTEKC 631
+IY +++ + + +P + + ++ E VL+TG G GIGR++A EFA+R +R +VLW +
Sbjct: 14 IIYSYLESLVKVFIPRRRKSVAGEIVLVTGAGHGIGRKIAYEFAKRKSR-LVLWDINKHG 72
Query: 632 LKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAAVVHGKSLMDS 811
L+ET E +++G H F+ D NREE+Y + V+++VGDITI+VNNA ++ L+ +
Sbjct: 73 LEETAAECKKLGATTHAFVVDCSNREEIYNSVNQVKKEVGDITIVVNNAGTIYPADLLST 132
Query: 812 DDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAIDYCTSKASA 991
D+ + + +N LG FW TKA LP M+ +GH+V + S+ IP I YC+SK +A
Sbjct: 133 KDEEITITFEVNILGHFWITKALLPAMMSRNHGHVVTVASLCGHGVIPYLIPYCSSKFAA 192
Query: 992 FAFMESLT--LGLLDCPGVSATTVLPFHTSTEMFQGMRVRFPNLFPPLKPETVARKTVEA 1165
F +LT L + G+ + + P +T + R L+P L+ + VAR ++
Sbjct: 193 VGFHRALTAELEAVGKTGIKTSCLCPVFVNTGFTKNPSTR---LWPILETDEVARSLIDG 249
Query: 1166 VQLNQTLLLPPWTMHVLIILKSILPQAALEEIHR 1267
+ N+ ++ P +++ + L+ LP+ AL I+R
Sbjct: 250 ILTNKKMIFVPSYLNISLTLERFLPERALAAINR 283
>ref|XP_003129386.2| PREDICTED: estradiol 17-beta-dehydrogenase 11-like [Sus scrofa].
Length = 313
Score = 162 bits (411), Expect = 3e-40
Identities = 89/229 (38%), Positives = 140/229 (61%), Gaps = 2/229 (0%)
Frame = +2
Query: 419 WLGALVVFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGAR 598
+L L++ PL +I+ +++ + L +P K + ++ E VLITG G G+GR A EFA+
Sbjct: 4 FLDVLLLLPLLLIF-TLESLLKLFIPKKRKSVTGEIVLITGAGHGLGRLTAFEFAKLKC- 61
Query: 599 KIVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITILVNNA 778
K+VLW + L+ET +E +++G++ H F+ D +RE++Y +AK V+ +VGD++ILVNNA
Sbjct: 62 KLVLWDINKHGLEETADECKRLGSKAHAFVVDCSDREDIYSSAKKVKAEVGDVSILVNNA 121
Query: 779 AVVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPG 958
VV+ L + D + K+ +N L FWTTKAFLP M++ +GHIV + S + IP
Sbjct: 122 GVVYTSDLFATQDPQIEKTFEVNILAHFWTTKAFLPAMMKNNHGHIVTVASAAGHAGIPF 181
Query: 959 AIDYCTSKASAFAFMESLT--LGLLDCPGVSATTVLPFHTSTEMFQGMR 1099
+ YC+SK +A F ++LT L L GV T + P +T + R
Sbjct: 182 LLAYCSSKFAAVGFHKALTEELAALKRTGVKTTCLCPNFINTGFIKNPR 230
>ref|XP_003355103.1| PREDICTED: LOW QUALITY PROTEIN: short-chain dehydrogenase/reductase
family 16C member 6-like [Sus scrofa].
Length = 373
Score = 156 bits (394), Expect = 3e-38
Identities = 103/341 (30%), Positives = 160/341 (46%), Gaps = 50/341 (14%)
Frame = +2
Query: 437 VFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVLWG 616
VF + +Y +++ ++P K +D+S E VLI G G+GR +A E A GA +VLW
Sbjct: 9 VFWGKFLYYFLESLFFKIIPKKKKDVSGEIVLIKGASSGLGRLMAIELASLGAI-LVLWD 67
Query: 617 RTEKCLKETTEEIRQMGT-ECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAAVVHG 793
E+ ET +++ G + + CD +R+EVY+ AK V+ VGD+TIL+NN V+ G
Sbjct: 68 INEENNMETCRLVKEKGAVKAFAYKCDCSHRQEVYRVAKQVKRDVGDVTILINNTGVITG 127
Query: 794 KSLMDSDDDALLKSQHINTLGQFWT-----------------TKAFLPRMLELQ------ 904
K +D+ D + ++ H N L FW + FL + L+
Sbjct: 128 KQFLDTPDHMVERTFHTNALSHFWAPLKGCLPGPSSSLIDWLSNLFLTGSISLKLRRQRG 187
Query: 905 ------------------------NGHIVCLNSVLALSAIPGAIDYCTSKASAFAFMESL 1012
+GH+VC+ S+ L + G Y SK +AF ESL
Sbjct: 188 APLPSSGRPCSLKPPANDDSGSITHGHLVCITSIAGLLVVSGLSHYSASKFAAFGLAESL 247
Query: 1013 T--LGLLDCPGVSATTVLPFHTSTEMFQGMRVRFPNLFPPLKPETVARKTVEAVQLNQTL 1186
L L + T V P+ +T MF G +++P L+P L+ E VA+K A+ Q
Sbjct: 248 NLELSLQQKSKIKTTIVCPYFINTGMFDGCTIKYPFLWPMLEQEYVAQKLXNAILEEQIY 307
Query: 1187 LLPPWTMHVLIILKSILPQAALEEIHRFSGTYTCMNTFKGR 1309
L+ P VL++ K L + + + G T M +F+GR
Sbjct: 308 LIMPQCFCVLLLFKQTLAPKMMIALAEYLGMETFMASFRGR 348
>ref|XP_001928117.2| PREDICTED: retinol dehydrogenase 10 [Sus scrofa].
Length = 257
Score = 84.7 bits (208), Expect = 1e-16
Identities = 56/166 (33%), Positives = 84/166 (50%), Gaps = 20/166 (12%)
Frame = +2
Query: 863 WTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAIDYCTSKASAFAFMESLT--LGLLDCP 1036
+TTKAFLP MLE+ +GHIV + S L L + G DYC SK F ESL+ L +
Sbjct: 75 FTTKAFLPTMLEINHGHIVTVASSLGLFSTAGVEDYCASKFGVVGFHESLSHELKAAEKD 134
Query: 1037 GVSAT--TVLPFHTSTEMFQGMRV-----RFPN-----------LFPPLKPETVARKTVE 1162
G+ T + T TE + R ++P PPLKP+ ++ ++
Sbjct: 135 GIKTTLRVYITRFTQTEGKETFRFTKNERKYPRTLKGGMKEIEPFLPPLKPDYCVKQAMK 194
Query: 1163 AVQLNQTLLLPPWTMHVLIILKSILPQAALEEIHRFSGTYTCMNTF 1300
A+ +Q ++ P M+++ +KSILP A+ ++RF G CM F
Sbjct: 195 AILTDQPMICTPRLMYIVTFMKSILPFEAVVCMYRFLGADKCMYPF 240
>ref|XP_001928783.1| PREDICTED: dehydrogenase/reductase SDR family member 7 [Sus scrofa].
Length = 339
Score = 84.0 bits (206), Expect = 2e-16
Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 3/182 (1%)
Frame = +2
Query: 527 VLITGGGRGIGRQLAREFAERGARKIVLWGRT---EKCLKETTEEIRQMGTECHYFICDV 697
V +TG GIG +L + ++ G ++ R E+ + E G + D+
Sbjct: 53 VWVTGASSGIGEELVYQLSKLGVSLVLSARRVQELERVKRRCLENGILKGKDILILPLDL 112
Query: 698 GNREEVYQTAKAVREKVGDITILVNNAAVVHGKSLMDSDDDALLKSQHINTLGQFWTTKA 877
NR KAV ++ G I ILVNN V +D+ D + +N LG TK
Sbjct: 113 ANRSSHEVATKAVLQEFGKIDILVNNGGVSQRSLCVDTSLDVYKELMEVNYLGTVSLTKC 172
Query: 878 FLPRMLELQNGHIVCLNSVLALSAIPGAIDYCTSKASAFAFMESLTLGLLDCPGVSATTV 1057
LP M+E + G I+ +NS + + A P + YC SK + F +L L PG++ + V
Sbjct: 173 VLPHMIEKKQGKIITVNSFMGIIAAPLSGGYCASKHALRGFFNTLRTELATYPGITVSNV 232
Query: 1058 LP 1063
P
Sbjct: 233 CP 234
>ref|XP_001927120.1| PREDICTED: carbonyl reductase family member 4-like [Sus scrofa].
Length = 237
Score = 77.0 bits (188), Expect = 2e-14
Identities = 52/189 (27%), Positives = 85/189 (44%)
Frame = +2
Query: 533 ITGGGRGIGRQLAREFAERGARKIVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREE 712
+ GG RGIGR +AR A+RG R ++ + L+ +G + CDV ++
Sbjct: 7 VFGGSRGIGRAVARLMAQRGYRLAIV----ARNLQGARAVAGDLGGDHLALSCDVAKEQD 62
Query: 713 VYQTAKAVREKVGDITILVNNAAVVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRM 892
V T + + + +G + LVN A + L+ + + +L N LG T KA + M
Sbjct: 63 VQSTFEEIEKNLGPVNFLVNAAGINRDNLLVRTSTEDMLCQLQTNLLGSMLTCKAAVKTM 122
Query: 893 LELQNGHIVCLNSVLALSAIPGAIDYCTSKASAFAFMESLTLGLLDCPGVSATTVLPFHT 1072
++ Q G IV + SV+ L PG Y SK F +L + + V P
Sbjct: 123 IKQQGGSIVNIGSVVGLKGNPGQSVYSASKGGLVGFSRALAKEVAK-KKIRVNVVAPGFV 181
Query: 1073 STEMFQGMR 1099
T+M + ++
Sbjct: 182 HTDMTKDLK 190
>ref|NP_999471.1| peroxisomal multifunctional enzyme type 2 [Sus scrofa].
Length = 737
Score = 68.9 bits (167), Expect = 6e-12
Identities = 61/216 (28%), Positives = 93/216 (43%), Gaps = 9/216 (4%)
Frame = +2
Query: 527 VLITGGGRGIGRQLAREFAERGARKIVL--------WGRTEKCLKETTEEIRQMGTECHY 682
VL+TG G G+GR A FAERGA +V G+ + EEIR+ G +
Sbjct: 12 VLVTGAGGGLGRTYALAFAERGASVVVNDLGGDMKGVGKGSLAADKVVEEIRRKGGKA-- 69
Query: 683 FICDVGNREEVYQTAKAVREKVGDITILVNNAAVVHGKSLMDSDDDALLKSQHINTLGQF 862
+ + + E + KA + G I ++VNNA ++ +S D+ Q ++ G F
Sbjct: 70 -VANYDSVEAGEKIVKAALDAFGRIDVVVNNAGILRDRSFSRISDEDWDMIQRVHLRGSF 128
Query: 863 WTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAIDYCTSKASAFAFMESLTL-GLLDCPG 1039
T+A M + G I+ +S + G +Y +K SL + G +
Sbjct: 129 MVTRAAWDHMKKQNFGRIIMTSSAAGIYGNFGQANYSAAKLGLLGLSNSLAVEGKKN--N 186
Query: 1040 VSATTVLPFHTSTEMFQGMRVRFPNLFPPLKPETVA 1147
+ TV P + M QG +L LKPE VA
Sbjct: 187 IHCNTVAPV-AGSRMTQGFLPE--DLIEALKPEYVA 219
>ref|NP_001183950.1| hydroxysteroid dehydrogenase-like protein 2 [Sus scrofa].
Length = 418
Score = 65.5 bits (158), Expect = 6e-11
Identities = 42/148 (28%), Positives = 76/148 (51%), Gaps = 6/148 (4%)
Frame = +2
Query: 527 VLITGGGRGIGRQLAREFAERGARKIVLWGRTEKCLK------ETTEEIRQMGTECHYFI 688
V ITG RGIG+ +A + A+ GA ++ T+ K EEI+ G + +
Sbjct: 13 VFITGASRGIGKAIALKAAKDGANVVIAAKTTQTHPKLQGTIYTAAEEIQAAGGKALPCV 72
Query: 689 CDVGNREEVYQTAKAVREKVGDITILVNNAAVVHGKSLMDSDDDALLKSQHINTLGQFWT 868
DV + +++ + EK G I ILVNNA+ + + +++ + ++NT G + T
Sbjct: 73 VDVRDEQQISDAVEKAVEKFGGIDILVNNASAISLTNTLETPTKRVDLMMNVNTRGTYLT 132
Query: 869 TKAFLPRMLELQNGHIVCLNSVLALSAI 952
+KA +P + + + HI+ L+ L L+ +
Sbjct: 133 SKACIPYLKKSRIAHILNLSPPLNLNPL 160
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,017,403
Number of extensions: 1169368
Number of successful extensions: 5970
Number of sequences better than 1.0e-05: 33
Number of HSP's gapped: 5871
Number of HSP's successfully gapped: 34
Length of query: 440
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 338
Effective length of database: 8,804,438
Effective search space: 2975900044
Effective search space used: 2975900044
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012651
(1322 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035433.1| short-chain dehydrogenase/reductase 3 isoform 1... 581 e-166
Alignment gi|NP_001165895.1| short-chain dehydrogenase/reductase 3 isofor... 531 e-151
Alignment gi|NP_001074179.1| short-chain dehydrogenase/reductase family 1... 205 6e-53
Alignment gi|NP_871789.1| epidermal retinol dehydrogenase 2 [Mus musculus]. 191 1e-48
Alignment gi|NP_598593.1| retinol dehydrogenase 10 [Mus musculus]. 185 8e-47
Alignment gi|NP_001156958.1| 17-beta-hydroxysteroid dehydrogenase 13 isof... 181 1e-45
Alignment gi|NP_444492.1| estradiol 17-beta-dehydrogenase 11 [Mus musculu... 179 4e-45
Alignment gi|NP_932147.2| 17-beta-hydroxysteroid dehydrogenase 13 isoform... 170 3e-42
Alignment gi|NP_001165583.1| dehydrogenase/reductase SDR family member 7B... 84 2e-16
Alignment gi|NP_663403.1| dehydrogenase/reductase SDR family member 7B is... 84 2e-16
>ref|NP_035433.1| short-chain dehydrogenase/reductase 3 isoform 1 [Mus musculus].
Length = 302
Score = 581 bits (1498), Expect = e-166
Identities = 287/302 (95%), Positives = 295/302 (97%)
Frame = +2
Query: 407 MVWKWLGALVVFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAE 586
MVWKWLGALVVFPLQMIYLV KAA+G+VLP KLRDLSRE+VLITGGGRGIGR LAREFAE
Sbjct: 1 MVWKWLGALVVFPLQMIYLVTKAAVGMVLPPKLRDLSRESVLITGGGRGIGRHLAREFAE 60
Query: 587 RGARKIVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITIL 766
RGARKIVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQ AKAVREKVGDITIL
Sbjct: 61 RGARKIVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQMAKAVREKVGDITIL 120
Query: 767 VNNAAVVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALS 946
VNNAAVVHGKSLMDSDDDALLKSQH+NTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALS
Sbjct: 121 VNNAAVVHGKSLMDSDDDALLKSQHVNTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALS 180
Query: 947 AIPGAIDYCTSKASAFAFMESLTLGLLDCPGVSATTVLPFHTSTEMFQGMRVRFPNLFPP 1126
AIPGAIDYCTSKASAFAFMESLTLGLLDCPGVSATTVLPFHTSTEMFQGMRVRFPNLFPP
Sbjct: 181 AIPGAIDYCTSKASAFAFMESLTLGLLDCPGVSATTVLPFHTSTEMFQGMRVRFPNLFPP 240
Query: 1127 LKPETVARKTVEAVQLNQTLLLPPWTMHVLIILKSILPQAALEEIHRFSGTYTCMNTFKG 1306
LKPETVAR+TV+AVQ NQ LLL PWTM++LIILKSILPQAALEEIHRFSGTYTCMNTFKG
Sbjct: 241 LKPETVARRTVDAVQQNQALLLLPWTMNILIILKSILPQAALEEIHRFSGTYTCMNTFKG 300
Query: 1307 RT 1312
RT
Sbjct: 301 RT 302
>ref|NP_001165895.1| short-chain dehydrogenase/reductase 3 isoform 2 [Mus musculus].
Length = 276
Score = 531 bits (1368), Expect = e-151
Identities = 263/276 (95%), Positives = 270/276 (97%)
Frame = +2
Query: 485 LVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVLWGRTEKCLKETTEEIRQM 664
+VLP KLRDLSRE+VLITGGGRGIGR LAREFAERGARKIVLWGRTEKCLKETTEEIRQM
Sbjct: 1 MVLPPKLRDLSRESVLITGGGRGIGRHLAREFAERGARKIVLWGRTEKCLKETTEEIRQM 60
Query: 665 GTECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAAVVHGKSLMDSDDDALLKSQHI 844
GTECHYFICDVGNREEVYQ AKAVREKVGDITILVNNAAVVHGKSLMDSDDDALLKSQH+
Sbjct: 61 GTECHYFICDVGNREEVYQMAKAVREKVGDITILVNNAAVVHGKSLMDSDDDALLKSQHV 120
Query: 845 NTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAIDYCTSKASAFAFMESLTLGL 1024
NTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAIDYCTSKASAFAFMESLTLGL
Sbjct: 121 NTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAIDYCTSKASAFAFMESLTLGL 180
Query: 1025 LDCPGVSATTVLPFHTSTEMFQGMRVRFPNLFPPLKPETVARKTVEAVQLNQTLLLPPWT 1204
LDCPGVSATTVLPFHTSTEMFQGMRVRFPNLFPPLKPETVAR+TV+AVQ NQ LLL PWT
Sbjct: 181 LDCPGVSATTVLPFHTSTEMFQGMRVRFPNLFPPLKPETVARRTVDAVQQNQALLLLPWT 240
Query: 1205 MHVLIILKSILPQAALEEIHRFSGTYTCMNTFKGRT 1312
M++LIILKSILPQAALEEIHRFSGTYTCMNTFKGRT
Sbjct: 241 MNILIILKSILPQAALEEIHRFSGTYTCMNTFKGRT 276
>ref|NP_001074179.1| short-chain dehydrogenase/reductase family 16C member 6 [Mus
musculus].
Length = 316
Score = 205 bits (522), Expect = 6e-53
Identities = 116/294 (39%), Positives = 173/294 (58%), Gaps = 3/294 (1%)
Frame = +2
Query: 437 VFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVLWG 616
+F + +Y +++ + V+P + +D+S E VLITG G G+GR LA FA GA +VLW
Sbjct: 9 IFFGKFLYYFLESLVFKVIPKRKKDVSGEIVLITGAGSGLGRLLAIHFASHGAT-LVLWD 67
Query: 617 RTEKCLKETTEEIRQMG-TECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAAVVHG 793
++ ET ++Q G + + CD +R EVY+ A V+E+VGD+TIL+NNA VV G
Sbjct: 68 INQEGNMETCRLVKQKGDVKVFAYKCDCSSRIEVYRVADQVKEEVGDVTILINNAGVVTG 127
Query: 794 KSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAIDYC 973
KS +++ D + KS +N + FWT KAFLP M++ +GH+VC++S+ L I G DY
Sbjct: 128 KSFLNTPDHLVEKSFLVNAISHFWTCKAFLPAMVKANHGHLVCISSIAGLVGINGLSDYS 187
Query: 974 TSKASAFAFMESLTLGL--LDCPGVSATTVLPFHTSTEMFQGMRVRFPNLFPPLKPETVA 1147
+SK +AF F ESL L L + V +T V P+ T MF+G ++P L P L+ E VA
Sbjct: 188 SSKFAAFGFAESLFLELTMIMKTKVKSTIVCPYFIKTGMFEGCTTKYPLLLPLLEQEYVA 247
Query: 1148 RKTVEAVQLNQTLLLPPWTMHVLIILKSILPQAALEEIHRFSGTYTCMNTFKGR 1309
+K A+ Q L+ P +V + LK I+ + + + G TCM +F GR
Sbjct: 248 QKIFNAILEEQVYLIIPKFAYVALFLKQIISPKMMIALGEYLGVDTCMTSFTGR 301
>ref|NP_871789.1| epidermal retinol dehydrogenase 2 [Mus musculus].
Length = 309
Score = 191 bits (485), Expect = 1e-48
Identities = 110/296 (37%), Positives = 164/296 (55%), Gaps = 3/296 (1%)
Frame = +2
Query: 431 LVVFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVL 610
L+VF + + V++A + V+ ++++ E VLITG G G+GR LA +FA GA +VL
Sbjct: 11 LLVFLGKSLLSVLEALLFHVISKPRKNVAGEIVLITGAGSGLGRLLALQFARLGA-VLVL 69
Query: 611 WGRTEKCLKETTEEIRQMGT-ECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAAVV 787
W ++ ET + R+ G H + CD REEVY+ A V+++VGD++IL+NNA +V
Sbjct: 70 WDVNKEANDETHQLAREAGAARVHAYTCDCSRREEVYRVADQVKKEVGDVSILINNAGIV 129
Query: 788 HGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAID 967
G++ +D DD + KS +N W KAFLP M+ +GH+VC++S L + G D
Sbjct: 130 TGRNFLDCPDDLMEKSFDVNFKAHLWMYKAFLPAMIANNHGHLVCISSSAGLIGVNGLSD 189
Query: 968 YCTSKASAFAFMESLTLGLLDCP--GVSATTVLPFHTSTEMFQGMRVRFPNLFPPLKPET 1141
YC SK +A F ES+ + L G+ T V PF T MF+G + P L P L PE
Sbjct: 190 YCASKFAALGFAESMFIETLAKKQWGIKTTIVCPFFIKTGMFEGCTTKCPTLLPILDPEY 249
Query: 1142 VARKTVEAVQLNQTLLLPPWTMHVLIILKSILPQAALEEIHRFSGTYTCMNTFKGR 1309
RK ++A+ Q L P ++ ++ LKSILP I + G + F G+
Sbjct: 250 AVRKIIDAILQEQLYLYMPKFLYFIVFLKSILPIKTGILIADYLGVFHMTEGFTGQ 305
>ref|NP_598593.1| retinol dehydrogenase 10 [Mus musculus].
Length = 341
Score = 185 bits (469), Expect = 8e-47
Identities = 111/317 (35%), Positives = 168/317 (52%), Gaps = 29/317 (9%)
Frame = +2
Query: 437 VFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVLWG 616
V ++++ V AA ++ K + ++ + LITG G G+GR A EFA R A +VLW
Sbjct: 9 VVTFKVLWAFVLAAARWLVRPKEKSVAGQVCLITGAGSGLGRLFALEFARRRAL-LVLWD 67
Query: 617 RTEKCLKETTEEIRQM-------------------------GTECHYFICDVGNREEVYQ 721
+ +ET +R + + + CDVG RE VY
Sbjct: 68 INTQSNEETAGMVRHIYRDLEAADAAALQAGKGEEEILPPCNLQVFTYTCDVGKRENVYL 127
Query: 722 TAKAVREKVGDITILVNNAAVVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLEL 901
TA+ VR++VG++++LVNNA VV G L++ D+ + ++ +N FWTTKAFLP MLE+
Sbjct: 128 TAERVRKEVGEVSVLVNNAGVVSGHHLLECPDELIERTMMVNCHAHFWTTKAFLPTMLEI 187
Query: 902 QNGHIVCLNSVLALSAIPGAIDYCTSKASAFAFMESLT--LGLLDCPGVSATTVLPFHTS 1075
+GHIV + S L L + G DYC SK F ESL+ L + G+ T V P+
Sbjct: 188 NHGHIVTVASSLGLFSTAGVEDYCASKFGVVGFHESLSHELKAAEKDGIKTTLVCPYLVD 247
Query: 1076 TEMFQGMRVR--FPNLFPPLKPETVARKTVEAVQLNQTLLLPPWTMHVLIILKSILPQAA 1249
T MF+G R+R PPLKP+ ++ + A+ +Q ++ P M+++ +KSILP A
Sbjct: 248 TGMFRGCRIRKEIEPFLPPLKPDYCVKQAMRAILTDQPMVCTPRLMYIVTFMKSILPFEA 307
Query: 1250 LEEIHRFSGTYTCMNTF 1300
+ ++RF G CM F
Sbjct: 308 VVCMYRFLGADKCMYPF 324
>ref|NP_001156958.1| 17-beta-hydroxysteroid dehydrogenase 13 isoform 1 [Mus musculus].
Length = 300
Score = 181 bits (458), Expect = 1e-45
Identities = 96/274 (35%), Positives = 158/274 (57%), Gaps = 2/274 (0%)
Frame = +2
Query: 452 MIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVLWGRTEKC 631
+IY +++ + +P + + ++ + VLITG G GIGR A EFA++ +R +VLW ++
Sbjct: 14 IIYSYLESLVKFFIPRRRKSVTGQTVLITGAGHGIGRLTAYEFAKQKSR-LVLWDINKRG 72
Query: 632 LKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAAVVHGKSLMDS 811
++ET ++ R++G H F+ D NR E+Y + V+ +VGD+ I+VNNA ++ L+ +
Sbjct: 73 VEETADKCRKLGAVVHVFVVDCSNRAEIYNSVDQVKREVGDVEIVVNNAGAIYPADLLSA 132
Query: 812 DDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAIDYCTSKASA 991
D+ + K+ +N LG FW KA LP ML +GHIV + SV IP I YC+SK +A
Sbjct: 133 KDEEITKTFEVNILGHFWIIKALLPSMLRRNSGHIVTVASVCGHGVIPYLIPYCSSKFAA 192
Query: 992 FAFMESLT--LGLLDCPGVSATTVLPFHTSTEMFQGMRVRFPNLFPPLKPETVARKTVEA 1165
F +LT L L G+ + + P +T + R L+P L+PE VAR +
Sbjct: 193 VGFHRALTAELDTLGKTGIQTSCLCPVFVNTGFTKNPSTR---LWPVLEPEEVARSLING 249
Query: 1166 VQLNQTLLLPPWTMHVLIILKSILPQAALEEIHR 1267
+ N+ ++ P +++ +IL+ LP+ AL+ I R
Sbjct: 250 ILTNKKMIFVPSYINISLILEKFLPERALKAISR 283
>ref|NP_444492.1| estradiol 17-beta-dehydrogenase 11 [Mus musculus].
Length = 298
Score = 179 bits (454), Expect = 4e-45
Identities = 102/299 (34%), Positives = 170/299 (56%), Gaps = 3/299 (1%)
Frame = +2
Query: 422 LGALVVFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARK 601
L +++ PL +++ + ++ + L +P K + ++ E VLITG G GIGR A EFA+ K
Sbjct: 5 LDLILLLPLLIVFSI-ESLVKLFIPKKKKSVAGEIVLITGAGHGIGRLTAYEFAKLNT-K 62
Query: 602 IVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAA 781
+VLW + ++ET + R++G + H F+ D REE+Y AK V+E+VGD++ILVNNA
Sbjct: 63 LVLWDINKNGIEETAAKCRKLGAQAHPFVVDCSQREEIYSAAKKVKEEVGDVSILVNNAG 122
Query: 782 VVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGA 961
VV+ L + D + K+ +N L FWTTKAFLP M++ +GHIV + S + +P
Sbjct: 123 VVYTADLFATQDPQIEKTFEVNVLAHFWTTKAFLPVMMKNNHGHIVTVASAAGHTVVPFL 182
Query: 962 IDYCTSKASAFAFMESLT--LGLLDCPGVSATTVLPFHTSTEMFQGMRVRFPNLFPPLKP 1135
+ YC+SK +A F +LT L L GV + + P +T + NL P L+P
Sbjct: 183 LAYCSSKFAAVGFHRALTDELAALGRTGVRTSCLCPNFINTGFIKNPST---NLGPTLEP 239
Query: 1136 ETVARKTVEAVQLNQTLLLPPWTMHVLIILKSILPQAALEEI-HRFSGTYTCMNTFKGR 1309
E V + + + ++ P ++ +L +L+ I+P+ L+ + HR + + + +K +
Sbjct: 240 EEVVEHLMHGILTEKQMIFVPSSIALLTVLERIVPERFLQVLKHRINVKFDAVVGYKDK 298
>ref|NP_932147.2| 17-beta-hydroxysteroid dehydrogenase 13 isoform 2 [Mus musculus].
Length = 304
Score = 170 bits (430), Expect = 3e-42
Identities = 90/261 (34%), Positives = 150/261 (57%), Gaps = 2/261 (0%)
Frame = +2
Query: 452 MIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVLWGRTEKC 631
+IY +++ + +P + + ++ + VLITG G GIGR A EFA++ +R +VLW ++
Sbjct: 14 IIYSYLESLVKFFIPRRRKSVTGQTVLITGAGHGIGRLTAYEFAKQKSR-LVLWDINKRG 72
Query: 632 LKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAAVVHGKSLMDS 811
++ET ++ R++G H F+ D NR E+Y + V+ +VGD+ I+VNNA ++ L+ +
Sbjct: 73 VEETADKCRKLGAVVHVFVVDCSNRAEIYNSVDQVKREVGDVEIVVNNAGAIYPADLLSA 132
Query: 812 DDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAIDYCTSKASA 991
D+ + K+ +N LG FW KA LP ML +GHIV + SV IP I YC+SK +A
Sbjct: 133 KDEEITKTFEVNILGHFWIIKALLPSMLRRNSGHIVTVASVCGHGVIPYLIPYCSSKFAA 192
Query: 992 FAFMESLT--LGLLDCPGVSATTVLPFHTSTEMFQGMRVRFPNLFPPLKPETVARKTVEA 1165
F +LT L L G+ + + P +T + R L+P L+PE VAR +
Sbjct: 193 VGFHRALTAELDTLGKTGIQTSCLCPVFVNTGFTKNPSTR---LWPVLEPEEVARSLING 249
Query: 1166 VQLNQTLLLPPWTMHVLIILK 1228
+ N+ ++ P +++ +IL+
Sbjct: 250 ILTNKKMIFVPSYINISLILE 270
>ref|NP_001165583.1| dehydrogenase/reductase SDR family member 7B isoform 1 [Mus
musculus].
Length = 314
Score = 84.0 bits (206), Expect = 2e-16
Identities = 57/190 (30%), Positives = 94/190 (49%), Gaps = 4/190 (2%)
Frame = +2
Query: 527 VLITGGGRGIGRQLAREFAERGARKIVLWGRTEKCLKETTEEIR--QMGTECHYFIC--D 694
V++TG G+GR+ A+ F GA K+VL GR K L+E + E+ G F+ D
Sbjct: 46 VVVTGATSGLGRECAKVFHAAGA-KLVLCGRNVKALEELSRELAGSSQGQTHQPFVVTFD 104
Query: 695 VGNREEVYQTAKAVREKVGDITILVNNAAVVHGKSLMDSDDDALLKSQHINTLGQFWTTK 874
+ + + A + + G + +L+NNA + + ++ D+ D K IN G TK
Sbjct: 105 LADPGTIAAAAAEILQCFGYVDVLINNAGISYRGTISDTIVDVDRKVMEINYFGPVALTK 164
Query: 875 AFLPRMLELQNGHIVCLNSVLALSAIPGAIDYCTSKASAFAFMESLTLGLLDCPGVSATT 1054
A LP M+E + GHIV ++S+ +IP Y SK + AF + L + + + T
Sbjct: 165 ALLPSMVERKQGHIVAISSIQGKISIPFRSAYSASKHATQAFFDCLRAEMEEA-NIKVTV 223
Query: 1055 VLPFHTSTEM 1084
+ P + T +
Sbjct: 224 ISPGYIHTNL 233
>ref|NP_663403.1| dehydrogenase/reductase SDR family member 7B isoform 2 [Mus
musculus].
Length = 323
Score = 84.0 bits (206), Expect = 2e-16
Identities = 57/190 (30%), Positives = 94/190 (49%), Gaps = 4/190 (2%)
Frame = +2
Query: 527 VLITGGGRGIGRQLAREFAERGARKIVLWGRTEKCLKETTEEIR--QMGTECHYFIC--D 694
V++TG G+GR+ A+ F GA K+VL GR K L+E + E+ G F+ D
Sbjct: 55 VVVTGATSGLGRECAKVFHAAGA-KLVLCGRNVKALEELSRELAGSSQGQTHQPFVVTFD 113
Query: 695 VGNREEVYQTAKAVREKVGDITILVNNAAVVHGKSLMDSDDDALLKSQHINTLGQFWTTK 874
+ + + A + + G + +L+NNA + + ++ D+ D K IN G TK
Sbjct: 114 LADPGTIAAAAAEILQCFGYVDVLINNAGISYRGTISDTIVDVDRKVMEINYFGPVALTK 173
Query: 875 AFLPRMLELQNGHIVCLNSVLALSAIPGAIDYCTSKASAFAFMESLTLGLLDCPGVSATT 1054
A LP M+E + GHIV ++S+ +IP Y SK + AF + L + + + T
Sbjct: 174 ALLPSMVERKQGHIVAISSIQGKISIPFRSAYSASKHATQAFFDCLRAEMEEA-NIKVTV 232
Query: 1055 VLPFHTSTEM 1084
+ P + T +
Sbjct: 233 ISPGYIHTNL 242
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 47,528,354
Number of extensions: 1466888
Number of successful extensions: 7423
Number of sequences better than 1.0e-05: 48
Number of HSP's gapped: 7218
Number of HSP's successfully gapped: 49
Length of query: 440
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 336
Effective length of database: 12,493,815
Effective search space: 4197921840
Effective search space used: 4197921840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012651
(1322 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004744.2| short-chain dehydrogenase/reductase 3 [Homo sap... 589 e-168
Alignment gi|NP_620419.2| epidermal retinol dehydrogenase 2 [Homo sapiens]. 189 4e-48
Alignment gi|NP_742034.1| retinol dehydrogenase 10 [Homo sapiens]. 186 5e-47
Alignment gi|NP_835236.2| 17-beta-hydroxysteroid dehydrogenase 13 isoform... 178 9e-45
Alignment gi|NP_057329.2| estradiol 17-beta-dehydrogenase 11 [Homo sapien... 173 4e-43
Alignment gi|NP_001129702.1| 17-beta-hydroxysteroid dehydrogenase 13 isof... 132 7e-31
Alignment gi|NP_057113.1| dehydrogenase/reductase SDR family member 7 pre... 83 5e-16
Alignment gi|NP_056325.2| dehydrogenase/reductase SDR family member 7B [H... 79 1e-14
Alignment gi|NP_116172.2| carbonyl reductase family member 4 [Homo sapien... 75 1e-13
Alignment gi|NP_066284.2| dehydrogenase/reductase SDR family member 4 [Ho... 68 2e-11
>ref|NP_004744.2| short-chain dehydrogenase/reductase 3 [Homo sapiens].
Length = 302
Score = 589 bits (1518), Expect = e-168
Identities = 293/302 (97%), Positives = 298/302 (98%)
Frame = +2
Query: 407 MVWKWLGALVVFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAE 586
MVWK LGALV+FPLQMIYLVVKAA+GLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAE
Sbjct: 1 MVWKRLGALVMFPLQMIYLVVKAAVGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAE 60
Query: 587 RGARKIVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITIL 766
RGARKIVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITIL
Sbjct: 61 RGARKIVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITIL 120
Query: 767 VNNAAVVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALS 946
VNNAAVVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALS
Sbjct: 121 VNNAAVVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALS 180
Query: 947 AIPGAIDYCTSKASAFAFMESLTLGLLDCPGVSATTVLPFHTSTEMFQGMRVRFPNLFPP 1126
AIPGAIDYCTSKASAFAFMESLTLGLLDCPGVSATTVLPFHTSTEMFQGMRVRFPNLFPP
Sbjct: 181 AIPGAIDYCTSKASAFAFMESLTLGLLDCPGVSATTVLPFHTSTEMFQGMRVRFPNLFPP 240
Query: 1127 LKPETVARKTVEAVQLNQTLLLPPWTMHVLIILKSILPQAALEEIHRFSGTYTCMNTFKG 1306
LKPETVAR+TVEAVQLNQ LLL PWTMH L+ILKSILPQAALEEIH+FSGTYTCMNTFKG
Sbjct: 241 LKPETVARRTVEAVQLNQALLLLPWTMHALVILKSILPQAALEEIHKFSGTYTCMNTFKG 300
Query: 1307 RT 1312
RT
Sbjct: 301 RT 302
>ref|NP_620419.2| epidermal retinol dehydrogenase 2 [Homo sapiens].
Length = 309
Score = 189 bits (481), Expect = 4e-48
Identities = 104/273 (38%), Positives = 160/273 (58%), Gaps = 3/273 (1%)
Frame = +2
Query: 431 LVVFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVL 610
L +F + ++ +++A I +LP ++++ E VLITG G G+GR LA +FA G+ +VL
Sbjct: 11 LFIFLGKSLFSLLEAMIFALLPKPRKNVAGEIVLITGAGSGLGRLLALQFARLGS-VLVL 69
Query: 611 WGRTEKCLKETTEEIRQMG-TECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAAVV 787
W ++ +ET + R+ G T H + CD +E VY+ A V+++VGD++IL+NNA +V
Sbjct: 70 WDINKEGNEETCKMAREAGATRVHAYTCDCSQKEGVYRVADQVKKEVGDVSILINNAGIV 129
Query: 788 HGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAID 967
GK +D D+ + KS +N WT KAFLP M+ +GH+VC++S LS + G D
Sbjct: 130 TGKKFLDCPDELMEKSFDVNFKAHLWTYKAFLPAMIANDHGHLVCISSSAGLSGVNGLAD 189
Query: 968 YCTSKASAFAFMESLTLG--LLDCPGVSATTVLPFHTSTEMFQGMRVRFPNLFPPLKPET 1141
YC SK +AF F ES+ + + G+ T V PF T MF+G P+L P L+P+
Sbjct: 190 YCASKFAAFGFAESVFVETFVQKQKGIKTTIVCPFFIKTGMFEGCTTGCPSLLPILEPKY 249
Query: 1142 VARKTVEAVQLNQTLLLPPWTMHVLIILKSILP 1240
K VEA+ + L P ++ ++ LKS LP
Sbjct: 250 AVEKIVEAILQEKMYLYMPKLLYFMMFLKSFLP 282
>ref|NP_742034.1| retinol dehydrogenase 10 [Homo sapiens].
Length = 341
Score = 186 bits (471), Expect = 5e-47
Identities = 111/317 (35%), Positives = 169/317 (53%), Gaps = 29/317 (9%)
Frame = +2
Query: 437 VFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVLWG 616
V ++++ V AA ++ K + ++ + LITG G G+GR A EFA R A +VLW
Sbjct: 9 VVTFKVLWAFVLAAARWLVRPKEKSVAGQVCLITGAGSGLGRLFALEFARRRAL-LVLWD 67
Query: 617 RTEKCLKETTEEIRQM-------------------------GTECHYFICDVGNREEVYQ 721
+ +ET +R + + + CDVG RE VY
Sbjct: 68 INTQSNEETAGMVRHIYRDLEAADAAALQAGNGEEEILPHCNLQVFTYTCDVGKRENVYL 127
Query: 722 TAKAVREKVGDITILVNNAAVVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLEL 901
TA+ VR++VG++++LVNNA VV G L++ D+ + ++ +N FWTTKAFLP MLE+
Sbjct: 128 TAERVRKEVGEVSVLVNNAGVVSGHHLLECPDELIERTMMVNCHAHFWTTKAFLPTMLEI 187
Query: 902 QNGHIVCLNSVLALSAIPGAIDYCTSKASAFAFMESLT--LGLLDCPGVSATTVLPFHTS 1075
+GHIV + S L L + G DYC SK F ESL+ L + G+ T V P+
Sbjct: 188 NHGHIVTVASSLGLFSTAGVEDYCASKFGVVGFHESLSHELKAAEKDGIKTTLVCPYLVD 247
Query: 1076 TEMFQGMRVR--FPNLFPPLKPETVARKTVEAVQLNQTLLLPPWTMHVLIILKSILPQAA 1249
T MF+G R+R PPLKP+ ++ ++A+ +Q ++ P M+++ +KSILP A
Sbjct: 248 TGMFRGCRIRKEIEPFLPPLKPDYCVKQAMKAILTDQPMICTPRLMYIVTFMKSILPFEA 307
Query: 1250 LEEIHRFSGTYTCMNTF 1300
+ ++RF G CM F
Sbjct: 308 VVCMYRFLGADKCMYPF 324
>ref|NP_835236.2| 17-beta-hydroxysteroid dehydrogenase 13 isoform A [Homo sapiens].
Length = 300
Score = 178 bits (452), Expect = 9e-45
Identities = 95/281 (33%), Positives = 162/281 (57%), Gaps = 2/281 (0%)
Frame = +2
Query: 431 LVVFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVL 610
+++ + +IY +++ + +P + + ++ E VLITG G GIGRQ EFA+R + +VL
Sbjct: 7 ILLLLITIIYSYLESLVKFFIPQRRKSVAGEIVLITGAGHGIGRQTTYEFAKRQSI-LVL 65
Query: 611 WGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAAVVH 790
W ++ ++ET E R++G H ++ D NREE+Y++ V+++VGD+TI+VNNA V+
Sbjct: 66 WDINKRGVEETAAECRKLGVTAHAYVVDCSNREEIYRSLNQVKKEVGDVTIVVNNAGTVY 125
Query: 791 GKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAIDY 970
L+ + D+ + K+ +N LG FW TKA LP M+E +GHIV + SV IP I Y
Sbjct: 126 PADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPY 185
Query: 971 CTSKASAFAFMESLT--LGLLDCPGVSATTVLPFHTSTEMFQGMRVRFPNLFPPLKPETV 1144
C+SK +A F LT L L G+ + + P +T + R L+P L+ + V
Sbjct: 186 CSSKFAAVGFHRGLTSELQALGKTGIKTSCLCPVFVNTGFTKNPSTR---LWPVLETDEV 242
Query: 1145 ARKTVEAVQLNQTLLLPPWTMHVLIILKSILPQAALEEIHR 1267
R ++ + N+ ++ P +++ + L+ LP+ A ++R
Sbjct: 243 VRSLIDGILTNKKMIFVPSYINIFLRLQKFLPERASAILNR 283
>ref|NP_057329.2| estradiol 17-beta-dehydrogenase 11 [Homo sapiens].
Length = 300
Score = 173 bits (438), Expect = 4e-43
Identities = 100/279 (35%), Positives = 159/279 (56%), Gaps = 2/279 (0%)
Frame = +2
Query: 422 LGALVVFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARK 601
L L++ PL +I +++ + L +P + + ++ E VLITG G GIGR A EFA+ + K
Sbjct: 5 LDILLLLPL-LIVCSLESFVKLFIPKRRKSVTGEIVLITGAGHGIGRLTAYEFAKLKS-K 62
Query: 602 IVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAA 781
+VLW + L+ET + + +G + H F+ D NRE++Y +AK V+ ++GD++ILVNNA
Sbjct: 63 LVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGDVSILVNNAG 122
Query: 782 VVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGA 961
VV+ L + D + K+ +N L FWTTKAFLP M + +GHIV + S ++P
Sbjct: 123 VVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVSVPFL 182
Query: 962 IDYCTSKASAFAFMESLT--LGLLDCPGVSATTVLPFHTSTEMFQGMRVRFPNLFPPLKP 1135
+ YC+SK +A F ++LT L L GV T + P +T + +L P L+P
Sbjct: 183 LAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNPST---SLGPTLEP 239
Query: 1136 ETVARKTVEAVQLNQTLLLPPWTMHVLIILKSILPQAAL 1252
E V + + + Q ++ P ++ L L+ ILP+ L
Sbjct: 240 EEVVNRLMHGILTEQKMIFIPSSIAFLTTLERILPERFL 278
>ref|NP_001129702.1| 17-beta-hydroxysteroid dehydrogenase 13 isoform B [Homo sapiens].
Length = 264
Score = 132 bits (332), Expect = 7e-31
Identities = 84/281 (29%), Positives = 141/281 (50%), Gaps = 2/281 (0%)
Frame = +2
Query: 431 LVVFPLQMIYLVVKAAIGLVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVL 610
+++ + +IY +++ + +P + + ++ E VLITG G GIGRQ EFA+R + +VL
Sbjct: 7 ILLLLITIIYSYLESLVKFFIPQRRKSVAGEIVLITGAGHGIGRQTTYEFAKRQSI-LVL 65
Query: 611 WGRTEKCLKETTEEIRQMGTECHYFICDVGNREEVYQTAKAVREKVGDITILVNNAAVVH 790
W D+ V+++VGD+TI+VNNA V+
Sbjct: 66 W--------------------------DINK----------VKKEVGDVTIVVNNAGTVY 89
Query: 791 GKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRMLELQNGHIVCLNSVLALSAIPGAIDY 970
L+ + D+ + K+ +N LG FW TKA LP M+E +GHIV + SV IP I Y
Sbjct: 90 PADLLSTKDEEITKTFEVNILGHFWITKALLPSMMERNHGHIVTVASVCGHEGIPYLIPY 149
Query: 971 CTSKASAFAFMESLT--LGLLDCPGVSATTVLPFHTSTEMFQGMRVRFPNLFPPLKPETV 1144
C+SK +A F LT L L G+ + + P +T + R L+P L+ + V
Sbjct: 150 CSSKFAAVGFHRGLTSELQALGKTGIKTSCLCPVFVNTGFTKNPSTR---LWPVLETDEV 206
Query: 1145 ARKTVEAVQLNQTLLLPPWTMHVLIILKSILPQAALEEIHR 1267
R ++ + N+ ++ P +++ + L+ LP+ A ++R
Sbjct: 207 VRSLIDGILTNKKMIFVPSYINIFLRLQKFLPERASAILNR 247
>ref|NP_057113.1| dehydrogenase/reductase SDR family member 7 precursor [Homo sapiens].
Length = 339
Score = 83.2 bits (204), Expect = 5e-16
Identities = 59/186 (31%), Positives = 85/186 (45%), Gaps = 7/186 (3%)
Frame = +2
Query: 527 VLITGGGRGIGRQLAREFAERGARKIVLWGRTEKCLKETTEEIRQMGTECHYFIC----- 691
V +TG GIG +LA + ++ G +VL R L+ + G I
Sbjct: 53 VWVTGASSGIGEELAYQLSKLGV-SLVLSARRVHELERVKRRCLENGNLKEKDILVLPLD 111
Query: 692 --DVGNREEVYQTAKAVREKVGDITILVNNAAVVHGKSLMDSDDDALLKSQHINTLGQFW 865
D G+ E KAV ++ G I ILVNN + MD+ D K +N LG
Sbjct: 112 LTDTGSHEAA---TKAVLQEFGRIDILVNNGGMSQRSLCMDTSLDVYRKLIELNYLGTVS 168
Query: 866 TTKAFLPRMLELQNGHIVCLNSVLALSAIPGAIDYCTSKASAFAFMESLTLGLLDCPGVS 1045
TK LP M+E + G IV +NS+L + ++P +I YC SK + F L L PG+
Sbjct: 169 LTKCVLPHMIERKQGKIVTVNSILGIISVPLSIGYCASKHALRGFFNGLRTELATYPGII 228
Query: 1046 ATTVLP 1063
+ + P
Sbjct: 229 VSNICP 234
>ref|NP_056325.2| dehydrogenase/reductase SDR family member 7B [Homo sapiens].
Length = 325
Score = 78.6 bits (192), Expect = 1e-14
Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 6/168 (3%)
Frame = +2
Query: 527 VLITGGGRGIGRQLAREFAERGARKIVLWGRTEKCLKETTEEIR-----QMGTECHYFIC 691
V+ITG G+G++ A+ F GA K+VL GR L+E E+ ++ T Y +
Sbjct: 55 VVITGATSGLGKECAKVFYAAGA-KLVLCGRNGGALEELIRELTASHATKVQTHKPYLVT 113
Query: 692 -DVGNREEVYQTAKAVREKVGDITILVNNAAVVHGKSLMDSDDDALLKSQHINTLGQFWT 868
D+ + + A + + G + ILVNNA + + ++MD+ D + N G
Sbjct: 114 FDLTDSGAIVAAAAEILQCFGYVDILVNNAGISYRGTIMDTTVDVDKRVMETNYFGPVAL 173
Query: 869 TKAFLPRMLELQNGHIVCLNSVLALSAIPGAIDYCTSKASAFAFMESL 1012
TKA LP M++ + GHIV ++S+ +IP Y SK + AF + L
Sbjct: 174 TKALLPSMIKRRQGHIVAISSIQGKMSIPFRSAYAASKHATQAFFDCL 221
>ref|NP_116172.2| carbonyl reductase family member 4 [Homo sapiens].
Length = 237
Score = 75.1 bits (183), Expect = 1e-13
Identities = 61/231 (26%), Positives = 100/231 (43%), Gaps = 1/231 (0%)
Frame = +2
Query: 533 ITGGGRGIGRQLAREFAERGARKIVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNREE 712
+ GG RGIGR +A+ A +G R V+ + L+ +G + F CDV +
Sbjct: 7 VFGGSRGIGRAVAQLMARKGYRLAVI----ARNLEGAKAAAGDLGGDHLAFSCDVAKEHD 62
Query: 713 VYQTAKAVREKVGDITILVNNAAVVHGKSLMDSDDDALLKSQHINTLGQFWTTKAFLPRM 892
V T + + + +G + LVN A + L+ + + ++ H N LG T KA + M
Sbjct: 63 VQNTFEELEKHLGRVNFLVNAAGINRDGLLVRTKTEDMVSQLHTNLLGSMLTCKAAMRTM 122
Query: 893 LELQNGHIVCLNSVLALSAIPGAIDYCTSKASAFAFMESLTLGLLDCPGVSATTVLPFHT 1072
++ Q G IV + S++ L G Y SK F +L + + V P
Sbjct: 123 IQQQGGSIVNVGSIVGLKGNSGQSVYSASKGGLVGFSRALAKEVAR-KKIRVNVVAPGFV 181
Query: 1073 STEMFQGMRVRFPNLFPPLKPETVARKTVEAVQLNQTLLLPPW-TMHVLII 1222
T+M + ++ PL +T+E LL P+ T HVL++
Sbjct: 182 HTDMTKDLKEEHLKKNIPLGR---FGETIEVAHAVVFLLESPYITGHVLVV 229
>ref|NP_066284.2| dehydrogenase/reductase SDR family member 4 [Homo sapiens].
Length = 278
Score = 68.2 bits (165), Expect = 2e-11
Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 1/172 (0%)
Frame = +2
Query: 512 LSRENVLITGGGRGIGRQLAREFAERGARKIVLWGRTEKCLKETTEEIRQMGTECHYFIC 691
L+ + L+T GIG +AR A+ GA +V+ R ++ + + ++ G +C
Sbjct: 30 LANKVALVTASTDGIGFAIARRLAQDGAH-VVVSSRKQQNVDQAVATLQGEGLSVTGTVC 88
Query: 692 DVGNREEVYQTAKAVREKVGDITILVNNAAV-VHGKSLMDSDDDALLKSQHINTLGQFWT 868
VG E+ + + G I ILV+NAAV S+MD ++ K+ IN
Sbjct: 89 HVGKAEDRERLVATAVKLHGGIDILVSNAAVNPFFGSIMDVTEEVWDKTLDINVKAPALM 148
Query: 869 TKAFLPRMLELQNGHIVCLNSVLALSAIPGAIDYCTSKASAFAFMESLTLGL 1024
TKA +P M + G +V ++S+ A S PG Y SK + ++L + L
Sbjct: 149 TKAVVPEMEKRGGGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLTKTLAIEL 200
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 56,577,333
Number of extensions: 1779021
Number of successful extensions: 9113
Number of sequences better than 1.0e-05: 39
Number of HSP's gapped: 8928
Number of HSP's successfully gapped: 39
Length of query: 440
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 334
Effective length of database: 14,802,980
Effective search space: 4944195320
Effective search space used: 4944195320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012651
(1322 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 480 e-132
>Sscrofa_Chr06
|| Length = 157765593
Score = 480 bits (242), Expect = e-132
Identities = 242/242 (100%)
Strand = Plus / Minus
Query: 865 gaccaccaaggccttcttgccgcggatgctggagctgcagaacggccacatcgtgtgtct 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66693905 gaccaccaaggccttcttgccgcggatgctggagctgcagaacggccacatcgtgtgtct 66693846
Query: 925 caactccgtgctggcgctttctgccatccccggtgccatcgactactgcacgtccaaggc 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66693845 caactccgtgctggcgctttctgccatccccggtgccatcgactactgcacgtccaaggc 66693786
Query: 985 ctcagccttcgccttcatggagagcctgaccctggggctgctggactgtccgggggtcag 1044
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66693785 ctcagccttcgccttcatggagagcctgaccctggggctgctggactgtccgggggtcag 66693726
Query: 1045 cgccaccaccgtgctgcctttccacaccagcaccgagatgtttcagggcatgagggtcag 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66693725 cgccaccaccgtgctgcctttccacaccagcaccgagatgtttcagggcatgagggtcag 66693666
Query: 1105 gt 1106
||
Sbjct: 66693665 gt 66693664
Score = 295 bits (149), Expect = 3e-77
Identities = 149/149 (100%)
Strand = Plus / Minus
Query: 600 agattgttctctggggccggactgagaaatgcctgaaggagacgacggaggagattcggc 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66695504 agattgttctctggggccggactgagaaatgcctgaaggagacgacggaggagattcggc 66695445
Query: 660 agatgggcaccgagtgccactacttcatctgcgacgtgggcaaccgggaagaggtgtacc 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66695444 agatgggcaccgagtgccactacttcatctgcgacgtgggcaaccgggaagaggtgtacc 66695385
Query: 720 agacggccaaagctgtccgggagaaggtg 748
|||||||||||||||||||||||||||||
Sbjct: 66695384 agacggccaaagctgtccgggagaaggtg 66695356
Score = 242 bits (122), Expect = 4e-61
Identities = 122/122 (100%)
Strand = Plus / Minus
Query: 744 aggtgggtgacatcaccatcctggtgaacaatgccgctgtggtccatgggaagagtctga 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66694386 aggtgggtgacatcaccatcctggtgaacaatgccgctgtggtccatgggaagagtctga 66694327
Query: 804 tggacagtgatgacgatgcccttctcaagtcccagcatatcaacaccctgggccagttct 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66694326 tggacagtgatgacgatgcccttctcaagtcccagcatatcaacaccctgggccagttct 66694267
Query: 864 gg 865
||
Sbjct: 66694266 gg 66694265
Score = 190 bits (96), Expect = 1e-45
Identities = 119/129 (92%)
Strand = Plus / Minus
Query: 1102 caggttccccaacctctttnnnnnnntgaagccggagacggtggcccggaagacggtgga 1161
||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 66688765 caggttccccaacctctttccccccctgaagccggagacggtggcccggaggacggtgga 66688706
Query: 1162 agccgtgcagctcaatcagaccctcctcctgcctccgtggaccatgcatgtcctcattat 1221
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 66688705 agccgtgcagctcaatcagaccctcctcctgctcccgtggaccatgcatgtcctcattat 66688646
Query: 1222 cttgaaaag 1230
|||||||||
Sbjct: 66688645 cttgaaaag 66688637
Score = 178 bits (90), Expect = 5e-42
Identities = 93/94 (98%)
Strand = Plus / Minus
Query: 1229 agcatactcccacaggctgccctcgaggagatccacagattctcaggaacctacacctgc 1288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66685735 agcatactcccacaggctgccctcgaggagatccacagattctcaggaacctacacctgc 66685676
Query: 1289 atgaacactttcaaggggcgcacctaaaagcagg 1322
|||||||||||||| |||||||||||||||||||
Sbjct: 66685675 atgaacactttcaaagggcgcacctaaaagcagg 66685642
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,557,982
Number of extensions: 161
Number of successful extensions: 161
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 5
Length of query: 1322
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1301
Effective length of database: 2,808,413,156
Effective search space: 3653745515956
Effective search space used: 3653745515956
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)