Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012652
(1331 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_777233.1| NADH dehydrogenase [ubiquinone] flavoprotein 1,... 807 0.0
>ref|NP_777233.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
precursor [Bos taurus].
Length = 464
Score = 807 bits (2085), Expect = 0.0
Identities = 390/394 (98%), Positives = 393/394 (99%)
Frame = +2
Query: 149 VSVRFSGDTTAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDW 328
VSVRFSGDTTAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDW
Sbjct: 16 VSVRFSGDTTAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDW 75
Query: 329 ILGEVKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDP 508
ILGEVKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDP
Sbjct: 76 ILGEVKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDP 135
Query: 509 HKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDV 688
HKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDV
Sbjct: 136 HKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDV 195
Query: 689 FVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTIC 868
FVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTIC
Sbjct: 196 FVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTIC 255
Query: 869 RRGGAWFASFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVIGGWDNLL 1048
RRGGAWFASFGRERNSGTKLFNISGHVN+PCTVEEEMSVPLKELIEKHAGGV GGWDNLL
Sbjct: 256 RRGGAWFASFGRERNSGTKLFNISGHVNNPCTVEEEMSVPLKELIEKHAGGVTGGWDNLL 315
Query: 1049 AVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYK 1228
AVIPGGSSTPLIPKSVCETVLMDFDAL+QAQTGLGTAAVIVMDRSTDIVKAIARLIEFYK
Sbjct: 316 AVIPGGSSTPLIPKSVCETVLMDFDALIQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYK 375
Query: 1229 HESCGQCTPCREGVDWMNKVMARFVKGDARPAEI 1330
HESCGQCTPCREGVDWMNKVMARFV+GDARPAEI
Sbjct: 376 HESCGQCTPCREGVDWMNKVMARFVRGDARPAEI 409
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 51,191,181
Number of extensions: 1454837
Number of successful extensions: 6355
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6336
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 338
Effective length of database: 14,207,134
Effective search space: 4802011292
Effective search space used: 4802011292
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012652
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012652
(1331 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851761.1| PREDICTED: similar to NADH dehydrogenase (ubiqu... 798 0.0
Alignment gi|XP_533212.2| PREDICTED: similar to NADH dehydrogenase (ubiqu... 793 0.0
Alignment gi|XP_864381.1| PREDICTED: similar to NADH dehydrogenase (ubiqu... 793 0.0
Alignment gi|XP_864317.1| PREDICTED: similar to NADH dehydrogenase (ubiqu... 711 0.0
Alignment gi|XP_864298.1| PREDICTED: similar to NADH dehydrogenase (ubiqu... 377 e-104
Alignment gi|XP_864277.1| PREDICTED: similar to NADH dehydrogenase (ubiqu... 199 4e-51
Alignment gi|XP_864339.1| PREDICTED: similar to NADH dehydrogenase (ubiqu... 163 3e-40
>ref|XP_851761.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein 1,
51kDa isoform 2 [Canis familiaris].
Length = 460
Score = 798 bits (2060), Expect = 0.0
Identities = 388/394 (98%), Positives = 390/394 (98%)
Frame = +2
Query: 149 VSVRFSGDTTAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDW 328
VSVRFSGDTTAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDW
Sbjct: 16 VSVRFSGDTTAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDW 75
Query: 329 ILGEVKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDP 508
ILGEVKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREI+RHDP
Sbjct: 76 ILGEVKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 135
Query: 509 HKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDV 688
HKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDV
Sbjct: 136 HKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDV 195
Query: 689 FVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTIC 868
FVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTIC
Sbjct: 196 FVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTIC 255
Query: 869 RRGGAWFASFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVIGGWDNLL 1048
RRGGAWFASFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHA GGWDNLL
Sbjct: 256 RRGGAWFASFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHA----GGWDNLL 311
Query: 1049 AVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYK 1228
AVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYK
Sbjct: 312 AVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYK 371
Query: 1229 HESCGQCTPCREGVDWMNKVMARFVKGDARPAEI 1330
HESCGQCTPCREGVDWMNKVMARFV+GDARPAEI
Sbjct: 372 HESCGQCTPCREGVDWMNKVMARFVRGDARPAEI 405
>ref|XP_533212.2| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein 1,
51kDa isoform 1 [Canis familiaris].
Length = 464
Score = 793 bits (2047), Expect = 0.0
Identities = 384/394 (97%), Positives = 387/394 (98%)
Frame = +2
Query: 149 VSVRFSGDTTAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDW 328
VSVRFSGDTTAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDW
Sbjct: 16 VSVRFSGDTTAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDW 75
Query: 329 ILGEVKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDP 508
ILGEVKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREI+RHDP
Sbjct: 76 ILGEVKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 135
Query: 509 HKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDV 688
HKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDV
Sbjct: 136 HKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDV 195
Query: 689 FVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTIC 868
FVVRGAGAYICGEETALIESIEGKQGKPRL P + GVFGCPTTVANVETVAVSPTIC
Sbjct: 196 FVVRGAGAYICGEETALIESIEGKQGKPRLNPSSHSSTGVFGCPTTVANVETVAVSPTIC 255
Query: 869 RRGGAWFASFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVIGGWDNLL 1048
RRGGAWFASFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGV GGWDNLL
Sbjct: 256 RRGGAWFASFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLL 315
Query: 1049 AVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYK 1228
AVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYK
Sbjct: 316 AVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYK 375
Query: 1229 HESCGQCTPCREGVDWMNKVMARFVKGDARPAEI 1330
HESCGQCTPCREGVDWMNKVMARFV+GDARPAEI
Sbjct: 376 HESCGQCTPCREGVDWMNKVMARFVRGDARPAEI 409
>ref|XP_864381.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein 1,
51kDa isoform 7 [Canis familiaris].
Length = 457
Score = 793 bits (2047), Expect = 0.0
Identities = 382/386 (98%), Positives = 385/386 (99%)
Frame = +2
Query: 173 TTAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTS 352
+TAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTS
Sbjct: 17 STAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTS 76
Query: 353 GLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCL 532
GLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREI+RHDPHKLVEGCL
Sbjct: 77 GLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCL 136
Query: 533 VGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGA 712
VGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGA
Sbjct: 137 VGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGA 196
Query: 713 YICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFA 892
YICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFA
Sbjct: 197 YICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFA 256
Query: 893 SFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVIGGWDNLLAVIPGGSS 1072
SFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGV GGWDNLLAVIPGGSS
Sbjct: 257 SFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSS 316
Query: 1073 TPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCT 1252
TPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCT
Sbjct: 317 TPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCT 376
Query: 1253 PCREGVDWMNKVMARFVKGDARPAEI 1330
PCREGVDWMNKVMARFV+GDARPAEI
Sbjct: 377 PCREGVDWMNKVMARFVRGDARPAEI 402
>ref|XP_864317.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein 1,
51kDa isoform 5 [Canis familiaris].
Length = 424
Score = 711 bits (1835), Expect = 0.0
Identities = 352/394 (89%), Positives = 354/394 (89%)
Frame = +2
Query: 149 VSVRFSGDTTAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDW 328
VSVRFSGDTTAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDW
Sbjct: 16 VSVRFSGDTTAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDW 75
Query: 329 ILGEVKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDP 508
ILGEVKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREI+RHDP
Sbjct: 76 ILGEVKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 135
Query: 509 HKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDV 688
HKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDV
Sbjct: 136 HKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDV 195
Query: 689 FVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTIC 868
FVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTIC
Sbjct: 196 FVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTIC 255
Query: 869 RRGGAWFASFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVIGGWDNLL 1048
RRGGAWFASFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHA
Sbjct: 256 RRGGAWFASFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHA----------- 304
Query: 1049 AVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYK 1228
AQTGLGTAAVIVMDRSTDIVKAIARLIEFYK
Sbjct: 305 -----------------------------AQTGLGTAAVIVMDRSTDIVKAIARLIEFYK 335
Query: 1229 HESCGQCTPCREGVDWMNKVMARFVKGDARPAEI 1330
HESCGQCTPCREGVDWMNKVMARFV+GDARPAEI
Sbjct: 336 HESCGQCTPCREGVDWMNKVMARFVRGDARPAEI 369
>ref|XP_864298.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein
1, 51kDa isoform 4 [Canis familiaris].
Length = 210
Score = 377 bits (968), Expect = e-104
Identities = 179/180 (99%), Positives = 180/180 (100%)
Frame = +2
Query: 149 VSVRFSGDTTAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDW 328
VSVRFSGDTTAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDW
Sbjct: 16 VSVRFSGDTTAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDW 75
Query: 329 ILGEVKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDP 508
ILGEVKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREI+RHDP
Sbjct: 76 ILGEVKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 135
Query: 509 HKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDV 688
HKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDV
Sbjct: 136 HKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDV 195
>ref|XP_864277.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein
1, 51kDa isoform 3 [Canis familiaris].
Length = 120
Score = 199 bits (507), Expect = 4e-51
Identities = 93/93 (100%), Positives = 93/93 (100%)
Frame = +2
Query: 149 VSVRFSGDTTAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDW 328
VSVRFSGDTTAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDW
Sbjct: 16 VSVRFSGDTTAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDW 75
Query: 329 ILGEVKTSGLRGRGGAGFPTGLKWSFMNKPSDG 427
ILGEVKTSGLRGRGGAGFPTGLKWSFMNKPSDG
Sbjct: 76 ILGEVKTSGLRGRGGAGFPTGLKWSFMNKPSDG 108
>ref|XP_864339.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein 1,
51kDa isoform 6 [Canis familiaris].
Length = 137
Score = 163 bits (413), Expect = 3e-40
Identities = 79/80 (98%), Positives = 80/80 (100%)
Frame = +2
Query: 1091 SVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGV 1270
SVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGV
Sbjct: 3 SVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGV 62
Query: 1271 DWMNKVMARFVKGDARPAEI 1330
DWMNKVMARFV+GDARPAEI
Sbjct: 63 DWMNKVMARFVRGDARPAEI 82
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 53,656,624
Number of extensions: 1511390
Number of successful extensions: 6511
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 6501
Number of HSP's successfully gapped: 8
Length of query: 443
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 337
Effective length of database: 15,340,888
Effective search space: 5169879256
Effective search space used: 5169879256
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012652
(1331 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122486.1| PREDICTED: NADH dehydrogenase [ubiquinone] f... 813 0.0
Alignment gi|XP_003122487.1| PREDICTED: NADH dehydrogenase [ubiquinone] f... 796 0.0
Alignment gi|XP_003353787.1| PREDICTED: NADH dehydrogenase [ubiquinone] f... 633 0.0
>ref|XP_003122486.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1,
mitochondrial-like isoform 1 [Sus scrofa].
Length = 464
Score = 813 bits (2101), Expect = 0.0
Identities = 394/394 (100%), Positives = 394/394 (100%)
Frame = +2
Query: 149 VSVRFSGDTTAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDW 328
VSVRFSGDTTAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDW
Sbjct: 16 VSVRFSGDTTAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDW 75
Query: 329 ILGEVKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDP 508
ILGEVKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDP
Sbjct: 76 ILGEVKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDP 135
Query: 509 HKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDV 688
HKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDV
Sbjct: 136 HKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDV 195
Query: 689 FVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTIC 868
FVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTIC
Sbjct: 196 FVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTIC 255
Query: 869 RRGGAWFASFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVIGGWDNLL 1048
RRGGAWFASFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVIGGWDNLL
Sbjct: 256 RRGGAWFASFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVIGGWDNLL 315
Query: 1049 AVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYK 1228
AVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYK
Sbjct: 316 AVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYK 375
Query: 1229 HESCGQCTPCREGVDWMNKVMARFVKGDARPAEI 1330
HESCGQCTPCREGVDWMNKVMARFVKGDARPAEI
Sbjct: 376 HESCGQCTPCREGVDWMNKVMARFVKGDARPAEI 409
>ref|XP_003122487.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1,
mitochondrial-like isoform 2 [Sus scrofa].
Length = 455
Score = 796 bits (2057), Expect = 0.0
Identities = 385/385 (100%), Positives = 385/385 (100%)
Frame = +2
Query: 176 TAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSG 355
TAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSG
Sbjct: 16 TAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSG 75
Query: 356 LRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLV 535
LRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLV
Sbjct: 76 LRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLV 135
Query: 536 GGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAY 715
GGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAY
Sbjct: 136 GGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAY 195
Query: 716 ICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFAS 895
ICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFAS
Sbjct: 196 ICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFAS 255
Query: 896 FGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVIGGWDNLLAVIPGGSST 1075
FGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVIGGWDNLLAVIPGGSST
Sbjct: 256 FGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVIGGWDNLLAVIPGGSST 315
Query: 1076 PLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTP 1255
PLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTP
Sbjct: 316 PLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTP 375
Query: 1256 CREGVDWMNKVMARFVKGDARPAEI 1330
CREGVDWMNKVMARFVKGDARPAEI
Sbjct: 376 CREGVDWMNKVMARFVKGDARPAEI 400
>ref|XP_003353787.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1,
mitochondrial-like [Sus scrofa].
Length = 363
Score = 633 bits (1633), Expect = 0.0
Identities = 308/308 (100%), Positives = 308/308 (100%)
Frame = +2
Query: 407 MNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAAYIYIRGE 586
MNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAAYIYIRGE
Sbjct: 1 MNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAAYIYIRGE 60
Query: 587 FYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQG 766
FYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQG
Sbjct: 61 FYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQG 120
Query: 767 KPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTKLFNISGH 946
KPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTKLFNISGH
Sbjct: 121 KPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTKLFNISGH 180
Query: 947 VNHPCTVEEEMSVPLKELIEKHAGGVIGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDA 1126
VNHPCTVEEEMSVPLKELIEKHAGGVIGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDA
Sbjct: 181 VNHPCTVEEEMSVPLKELIEKHAGGVIGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDA 240
Query: 1127 LVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVK 1306
LVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVK
Sbjct: 241 LVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVK 300
Query: 1307 GDARPAEI 1330
GDARPAEI
Sbjct: 301 GDARPAEI 308
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 33,113,326
Number of extensions: 943579
Number of successful extensions: 4089
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4079
Number of HSP's successfully gapped: 3
Length of query: 443
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 341
Effective length of database: 8,804,438
Effective search space: 3002313358
Effective search space used: 3002313358
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012652
(1331 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598427.1| NADH dehydrogenase [ubiquinone] flavoprotein 1,... 794 0.0
>ref|NP_598427.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
precursor [Mus musculus].
Length = 464
Score = 794 bits (2050), Expect = 0.0
Identities = 384/394 (97%), Positives = 386/394 (97%)
Frame = +2
Query: 149 VSVRFSGDTTAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDW 328
VSVRFS TTAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGA RGDWYKTKEILLKGPDW
Sbjct: 16 VSVRFSSGTTAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGALRRGDWYKTKEILLKGPDW 75
Query: 329 ILGEVKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDP 508
ILGE+KTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREI+RHDP
Sbjct: 76 ILGEMKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 135
Query: 509 HKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDV 688
HKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGS YDFDV
Sbjct: 136 HKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSDYDFDV 195
Query: 689 FVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTIC 868
FVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTIC
Sbjct: 196 FVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTIC 255
Query: 869 RRGGAWFASFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVIGGWDNLL 1048
RRGG WFA FGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGV GGWDNLL
Sbjct: 256 RRGGTWFAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLL 315
Query: 1049 AVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYK 1228
AVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYK
Sbjct: 316 AVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYK 375
Query: 1229 HESCGQCTPCREGVDWMNKVMARFVKGDARPAEI 1330
HESCGQCTPCREGVDWMNKVMARFVKGDARPAEI
Sbjct: 376 HESCGQCTPCREGVDWMNKVMARFVKGDARPAEI 409
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 43,867,480
Number of extensions: 1204543
Number of successful extensions: 4881
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4873
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 339
Effective length of database: 12,493,815
Effective search space: 4235403285
Effective search space used: 4235403285
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012652
(1331 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_009034.2| NADH dehydrogenase [ubiquinone] flavoprotein 1,... 801 0.0
Alignment gi|NP_001159574.1| NADH dehydrogenase [ubiquinone] flavoprotein... 784 0.0
>ref|NP_009034.2| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial isoform
1 precursor [Homo sapiens].
Length = 464
Score = 801 bits (2069), Expect = 0.0
Identities = 385/394 (97%), Positives = 390/394 (98%)
Frame = +2
Query: 149 VSVRFSGDTTAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDW 328
VSVRFSGDTTAPKKTSFGSLKDEDRIFTNLYGRHDWRLKG+ SRGDWYKTKEILLKGPDW
Sbjct: 16 VSVRFSGDTTAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGSLSRGDWYKTKEILLKGPDW 75
Query: 329 ILGEVKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDP 508
ILGE+KTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREI+RHDP
Sbjct: 76 ILGEIKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREILRHDP 135
Query: 509 HKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDV 688
HKL+EGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDV
Sbjct: 136 HKLLEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDV 195
Query: 689 FVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTIC 868
FVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTIC
Sbjct: 196 FVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTIC 255
Query: 869 RRGGAWFASFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVIGGWDNLL 1048
RRGG WFA FGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGV GGWDNLL
Sbjct: 256 RRGGTWFAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLL 315
Query: 1049 AVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYK 1228
AVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYK
Sbjct: 316 AVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYK 375
Query: 1229 HESCGQCTPCREGVDWMNKVMARFVKGDARPAEI 1330
HESCGQCTPCREGVDWMNKVMARFV+GDARPAEI
Sbjct: 376 HESCGQCTPCREGVDWMNKVMARFVRGDARPAEI 409
>ref|NP_001159574.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial isoform
2 precursor [Homo sapiens].
Length = 455
Score = 784 bits (2025), Expect = 0.0
Identities = 376/385 (97%), Positives = 381/385 (98%)
Frame = +2
Query: 176 TAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSG 355
TAPKKTSFGSLKDEDRIFTNLYGRHDWRLKG+ SRGDWYKTKEILLKGPDWILGE+KTSG
Sbjct: 16 TAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGSLSRGDWYKTKEILLKGPDWILGEIKTSG 75
Query: 356 LRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLV 535
LRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREI+RHDPHKL+EGCLV
Sbjct: 76 LRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLLEGCLV 135
Query: 536 GGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAY 715
GGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAY
Sbjct: 136 GGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAY 195
Query: 716 ICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFAS 895
ICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGG WFA
Sbjct: 196 ICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAG 255
Query: 896 FGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVIGGWDNLLAVIPGGSST 1075
FGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGV GGWDNLLAVIPGGSST
Sbjct: 256 FGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSST 315
Query: 1076 PLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTP 1255
PLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTP
Sbjct: 316 PLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTP 375
Query: 1256 CREGVDWMNKVMARFVKGDARPAEI 1330
CREGVDWMNKVMARFV+GDARPAEI
Sbjct: 376 CREGVDWMNKVMARFVRGDARPAEI 400
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 52,321,143
Number of extensions: 1461918
Number of successful extensions: 6236
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6216
Number of HSP's successfully gapped: 2
Length of query: 443
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 337
Effective length of database: 14,802,980
Effective search space: 4988604260
Effective search space used: 4988604260
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012652
(1331 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 426 e-116
>Sscrofa_Chr02
|| Length = 162569375
Score = 426 bits (215), Expect = e-116
Identities = 215/215 (100%)
Strand = Plus / Minus
Query: 803 ggagtgtttggctgccctacaaccgtggccaacgtggagacagtggctgtgtcccctacc 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3600339 ggagtgtttggctgccctacaaccgtggccaacgtggagacagtggctgtgtcccctacc 3600280
Query: 863 atctgccgccgtgggggcgcgtggtttgccagctttggccgagagcgcaactccggcacc 922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3600279 atctgccgccgtgggggcgcgtggtttgccagctttggccgagagcgcaactccggcacc 3600220
Query: 923 aaactgttcaacatctctggccacgtcaaccacccgtgcactgtggaggaggagatgtct 982
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3600219 aaactgttcaacatctctggccacgtcaaccacccgtgcactgtggaggaggagatgtct 3600160
Query: 983 gtgccactgaaggagctgattgaaaagcatgcggg 1017
|||||||||||||||||||||||||||||||||||
Sbjct: 3600159 gtgccactgaaggagctgattgaaaagcatgcggg 3600125
Score = 385 bits (194), Expect = e-104
Identities = 194/194 (100%)
Strand = Plus / Minus
Query: 611 caggtggccatccgagaggcctatgaggctggtctgatcggcaagaacgcctgcggctcc 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3600935 caggtggccatccgagaggcctatgaggctggtctgatcggcaagaacgcctgcggctcc 3600876
Query: 671 ggctacgattttgacgtgtttgtggtgcgcggggctggggcctacatctgcggggaggag 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3600875 ggctacgattttgacgtgtttgtggtgcgcggggctggggcctacatctgcggggaggag 3600816
Query: 731 accgcgctcatcgagtctatcgagggcaagcagggcaagccccgcctgaagccgcccttc 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3600815 accgcgctcatcgagtctatcgagggcaagcagggcaagccccgcctgaagccgcccttc 3600756
Query: 791 cccgcagacgtggg 804
||||||||||||||
Sbjct: 3600755 cccgcagacgtggg 3600742
Score = 379 bits (191), Expect = e-102
Identities = 191/191 (100%)
Strand = Plus / Minus
Query: 427 caggcccaagtatctggtggtgaacgctgatgagggggagcccggcacctgcaaggaccg 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3602208 caggcccaagtatctggtggtgaacgctgatgagggggagcccggcacctgcaaggaccg 3602149
Query: 487 ggagatcatacgccacgatccccacaagctggtggaaggctgcctggtggggggccgggc 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3602148 ggagatcatacgccacgatccccacaagctggtggaaggctgcctggtggggggccgggc 3602089
Query: 547 catgggcgcccgcgccgcctacatctacatccgaggggagttctacaacgaggcctccaa 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3602088 catgggcgcccgcgccgcctacatctacatccgaggggagttctacaacgaggcctccaa 3602029
Query: 607 tctgcaggtgg 617
|||||||||||
Sbjct: 3602028 tctgcaggtgg 3602018
Score = 345 bits (174), Expect = 4e-92
Identities = 174/174 (100%)
Strand = Plus / Minus
Query: 257 agactgaaaggtgcccagagccgcggtgactggtacaagacaaaggagattctgctgaag 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3603093 agactgaaaggtgcccagagccgcggtgactggtacaagacaaaggagattctgctgaag 3603034
Query: 317 ggacctgactggatcctgggtgaggtcaagacgtcgggcttgcggggccgtggaggcgct 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3603033 ggacctgactggatcctgggtgaggtcaagacgtcgggcttgcggggccgtggaggcgct 3602974
Query: 377 ggcttccccaccggccttaaatggagcttcatgaataagccctcagatggcagg 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3602973 ggcttccccaccggccttaaatggagcttcatgaataagccctcagatggcagg 3602920
Score = 345 bits (174), Expect = 4e-92
Identities = 174/174 (100%)
Strand = Plus / Minus
Query: 2 gtgacgttcttcctgtgcgccgcctagcgtctcggtcgcgccggttcctcagcctcagag 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3604481 gtgacgttcttcctgtgcgccgcctagcgtctcggtcgcgccggttcctcagcctcagag 3604422
Query: 62 ctgtgaaggtgacagcgggaggtgaccaggttggctcccgcgatgctggcggcacggcga 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3604421 ctgtgaaggtgacagcgggaggtgaccaggttggctcccgcgatgctggcggcacggcga 3604362
Query: 122 ttgctcggcgggtcgctccccgcgcgagtatctgtgcgtttcagcggcgacacg 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3604361 ttgctcggcgggtcgctccccgcgcgagtatctgtgcgtttcagcggcgacacg 3604308
Score = 333 bits (168), Expect = 1e-88
Identities = 168/168 (100%)
Strand = Plus / Minus
Query: 1016 ggaggtgtcataggtggctgggacaacctccttgctgtgatccctggtggctcatccacc 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3599960 ggaggtgtcataggtggctgggacaacctccttgctgtgatccctggtggctcatccacc 3599901
Query: 1076 ccactgatccccaagtccgtgtgtgagacggtgctgatggactttgacgcgctggtgcag 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3599900 ccactgatccccaagtccgtgtgtgagacggtgctgatggactttgacgcgctggtgcag 3599841
Query: 1136 gcacagacgggcctgggcacggctgcggtgattgtcatggaccgctcg 1183
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3599840 gcacagacgggcctgggcacggctgcggtgattgtcatggaccgctcg 3599793
Score = 168 bits (85), Expect = 5e-39
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 1183 gacggacatcgtgaaagccatcgcccgcctcatcgagttctacaagcatgagagctgtgg 1242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3599513 gacggacatcgtgaaagccatcgcccgcctcatcgagttctacaagcatgagagctgtgg 3599454
Query: 1243 ccagtgcaccccgtgccgtgagggt 1267
|||||||||||||||||||||||||
Sbjct: 3599453 ccagtgcaccccgtgccgtgagggt 3599429
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 175 gacagcgcccaagaaaacctcatttggctcgctgaaggatgaagaccggatcttcaccaa 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3603247 gacagcgcccaagaaaacctcatttggctcgctgaaggatgaagaccggatcttcaccaa 3603188
Query: 235 cctgtatggccgccatgactggag 258
||||||||||||||||||||||||
Sbjct: 3603187 cctgtatggccgccatgactggag 3603164
Score = 133 bits (67), Expect = 3e-28
Identities = 67/67 (100%)
Strand = Plus / Minus
Query: 1265 ggtgtggactggatgaacaaggtgatggcccgctttgtgaagggggacgccaggccggct 1324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3599206 ggtgtggactggatgaacaaggtgatggcccgctttgtgaagggggacgccaggccggct 3599147
Query: 1325 gagatcg 1331
|||||||
Sbjct: 3599146 gagatcg 3599140
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,239,026
Number of extensions: 107
Number of successful extensions: 107
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 9
Length of query: 1331
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1310
Effective length of database: 2,808,413,156
Effective search space: 3679021234360
Effective search space used: 3679021234360
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)