Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012665
(2363 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029584.1| F-box only protein 9 [Bos taurus]. 582 e-166
>ref|NP_001029584.1| F-box only protein 9 [Bos taurus].
Length = 437
Score = 582 bits (1501), Expect = e-166
Identities = 292/340 (85%), Positives = 304/340 (89%), Gaps = 1/340 (0%)
Frame = +2
Query: 1292 MAEAEEDCHSDAARAGDDD-EKDSSAETDLQAQLQMFRAQWMFELAPGGGSSSLETRPYT 1468
MAEAEEDCHS+A R GDDD E +S AETDLQAQLQ FRAQWMFELAPGGGS +LE+RP
Sbjct: 1 MAEAEEDCHSEAVREGDDDDENESPAETDLQAQLQRFRAQWMFELAPGGGSGNLESRPCR 60
Query: 1469 ASRGSLLKAADTKGKQELAKEEKARELFLKAVEEEQNGALYEAIKFYRRAMQLVPDIEFK 1648
A+RGSLL+AADT+GKQELAKEEKARELFLKAVEEEQNGALYEAIKFYRRAMQLVPDIEFK
Sbjct: 61 AARGSLLRAADTRGKQELAKEEKARELFLKAVEEEQNGALYEAIKFYRRAMQLVPDIEFK 120
Query: 1649 ITYTRSPDGDGVGNSYIXXXXXXXXSKTADLLAYFQQQLTFQESVLKLCQPELESSQTHI 1828
ITYTRSPDGDGVGNSYI SK ADLL+YFQQQLTFQESVLKLCQPELESSQTHI
Sbjct: 121 ITYTRSPDGDGVGNSYIEDTDDD--SKMADLLSYFQQQLTFQESVLKLCQPELESSQTHI 178
Query: 1829 SVLPMEVLMYIFRWVVSSDLDLRSLEQLSQVCRGFYICARDPEIWRLACLKVWGRSCMKL 2008
S LPMEVLMYIFRWVVSSDLDLRSLEQLSQVCRGFYICARDPEIWRLACLKVWGRSC+KL
Sbjct: 179 SALPMEVLMYIFRWVVSSDLDLRSLEQLSQVCRGFYICARDPEIWRLACLKVWGRSCIKL 238
Query: 2009 VPYTSWREMFLERPRVRFDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYIRFFPDGHV 2188
VPYTSWREMFLERPRVRFDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRY+RFFPDGHV
Sbjct: 239 VPYTSWREMFLERPRVRFDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYVRFFPDGHV 298
Query: 2189 MMLTTPEEPSSIVPRFRTQEYQN*GNFYWGHYSLGPKNTN 2308
MMLTTPEEP SIVPR RT+ + GHY L N
Sbjct: 299 MMLTTPEEPQSIVPRLRTRNTRT-DAILLGHYRLSQDTDN 337
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 87,403,844
Number of extensions: 2465168
Number of successful extensions: 10198
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 10148
Number of HSP's successfully gapped: 1
Length of query: 787
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 677
Effective length of database: 14,041,694
Effective search space: 9506226838
Effective search space used: 9506226838
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012665
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012665
(2363 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001153771.1| F-box protein 9 [Canis lupus familiaris]. 572 e-163
>ref|NP_001153771.1| F-box protein 9 [Canis lupus familiaris].
Length = 435
Score = 572 bits (1475), Expect = e-163
Identities = 288/339 (84%), Positives = 303/339 (89%)
Frame = +2
Query: 1292 MAEAEEDCHSDAARAGDDDEKDSSAETDLQAQLQMFRAQWMFELAPGGGSSSLETRPYTA 1471
MA+AEEDCHSD RA +DDE +S AETDLQAQLQMFRAQWMFELAPG GSS+LETRP A
Sbjct: 1 MADAEEDCHSDTVRA-EDDENESPAETDLQAQLQMFRAQWMFELAPGVGSSNLETRPCRA 59
Query: 1472 SRGSLLKAADTKGKQELAKEEKARELFLKAVEEEQNGALYEAIKFYRRAMQLVPDIEFKI 1651
++GSLLKAADTKGKQELAKEEKARELFLKAVEEEQNGALYEAIKFYRRAMQLVPDIEFKI
Sbjct: 60 AKGSLLKAADTKGKQELAKEEKARELFLKAVEEEQNGALYEAIKFYRRAMQLVPDIEFKI 119
Query: 1652 TYTRSPDGDGVGNSYIXXXXXXXXSKTADLLAYFQQQLTFQESVLKLCQPELESSQTHIS 1831
TYTRSPDGDGVGNSY+ SK ADLL+ FQQQLTFQES+LKLCQPELE++QTHIS
Sbjct: 120 TYTRSPDGDGVGNSYMEDNDDD--SKMADLLSCFQQQLTFQESMLKLCQPELENNQTHIS 177
Query: 1832 VLPMEVLMYIFRWVVSSDLDLRSLEQLSQVCRGFYICARDPEIWRLACLKVWGRSCMKLV 2011
VLPMEVLMYIFRWVVSSDLDLRSLEQLSQVCRGFYICARDPEIWRL CLKVWGRSC+KLV
Sbjct: 178 VLPMEVLMYIFRWVVSSDLDLRSLEQLSQVCRGFYICARDPEIWRLDCLKVWGRSCIKLV 237
Query: 2012 PYTSWREMFLERPRVRFDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYIRFFPDGHVM 2191
PYTSWREMFLERPRVRFDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYIRFFPDGHVM
Sbjct: 238 PYTSWREMFLERPRVRFDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYIRFFPDGHVM 297
Query: 2192 MLTTPEEPSSIVPRFRTQEYQN*GNFYWGHYSLGPKNTN 2308
+LTTPEEP SIVPR RT+ + GHY L N
Sbjct: 298 VLTTPEEPQSIVPRLRTRNTRT-DAILLGHYRLSQDTDN 335
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 90,732,926
Number of extensions: 2472440
Number of successful extensions: 10565
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 10521
Number of HSP's successfully gapped: 1
Length of query: 787
Length of database: 18,874,504
Length adjustment: 111
Effective length of query: 676
Effective length of database: 15,174,208
Effective search space: 10257764608
Effective search space used: 10257764608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012665
(2363 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001153769.1| F-box protein 9 [Sus scrofa]. 624 e-179
>ref|NP_001153769.1| F-box protein 9 [Sus scrofa].
Length = 438
Score = 624 bits (1608), Expect = e-179
Identities = 312/339 (92%), Positives = 314/339 (92%)
Frame = +2
Query: 1292 MAEAEEDCHSDAARAGDDDEKDSSAETDLQAQLQMFRAQWMFELAPGGGSSSLETRPYTA 1471
MAEAEEDCHSDAARAGDDDEKDSSAETDLQAQLQMFRAQWMFELAPGGGSSSLETRPYTA
Sbjct: 1 MAEAEEDCHSDAARAGDDDEKDSSAETDLQAQLQMFRAQWMFELAPGGGSSSLETRPYTA 60
Query: 1472 SRGSLLKAADTKGKQELAKEEKARELFLKAVEEEQNGALYEAIKFYRRAMQLVPDIEFKI 1651
SRGSLLKAADTKGKQELAKEEKARELFLKAVEEEQNGALYEAIKFYRRAMQLVPDIEFKI
Sbjct: 61 SRGSLLKAADTKGKQELAKEEKARELFLKAVEEEQNGALYEAIKFYRRAMQLVPDIEFKI 120
Query: 1652 TYTRSPDGDGVGNSYIXXXXXXXXSKTADLLAYFQQQLTFQESVLKLCQPELESSQTHIS 1831
TYTRSPDGDGVGNSYI SKTADLLAYFQQQLTFQESVLKLCQPELESSQTHIS
Sbjct: 121 TYTRSPDGDGVGNSYIEDEDEDEDSKTADLLAYFQQQLTFQESVLKLCQPELESSQTHIS 180
Query: 1832 VLPMEVLMYIFRWVVSSDLDLRSLEQLSQVCRGFYICARDPEIWRLACLKVWGRSCMKLV 2011
VLPMEVLMYIFRWVVSSDLDLRSLEQLSQVCRGFYICARDPEIWRLACLKVWGRSCMKLV
Sbjct: 181 VLPMEVLMYIFRWVVSSDLDLRSLEQLSQVCRGFYICARDPEIWRLACLKVWGRSCMKLV 240
Query: 2012 PYTSWREMFLERPRVRFDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYIRFFPDGHVM 2191
PYTSWREMFLERPRVRFDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYIRFFPDGHVM
Sbjct: 241 PYTSWREMFLERPRVRFDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYIRFFPDGHVM 300
Query: 2192 MLTTPEEPSSIVPRFRTQEYQN*GNFYWGHYSLGPKNTN 2308
MLTTPEEP SIVPR RT+ + GHY L N
Sbjct: 301 MLTTPEEPPSIVPRLRTRNTRT-EAILLGHYRLSQDTDN 338
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 56,746,983
Number of extensions: 1653785
Number of successful extensions: 6622
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6599
Number of HSP's successfully gapped: 1
Length of query: 787
Length of database: 11,343,932
Length adjustment: 107
Effective length of query: 680
Effective length of database: 8,679,953
Effective search space: 5902368040
Effective search space used: 5902368040
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012665
(2363 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_076094.2| F-box only protein 9 isoform 1 [Mus musculus]. 553 e-157
Alignment gi|NP_001074959.1| F-box only protein 9 isoform 2 [Mus musculus]. 551 e-156
>ref|NP_076094.2| F-box only protein 9 isoform 1 [Mus musculus].
Length = 436
Score = 553 bits (1424), Expect = e-157
Identities = 283/340 (83%), Positives = 294/340 (86%), Gaps = 1/340 (0%)
Frame = +2
Query: 1292 MAEAEEDCHSDAARAGDDDEKDSSAETDLQAQLQMFRAQWMFELAPGGGSSSLETRPYTA 1471
MAEAEEDCHSDA R GD+ +S AE DLQAQLQMFRAQWMFEL PG GSS ETRP A
Sbjct: 1 MAEAEEDCHSDADRVGDEGN-ESPAERDLQAQLQMFRAQWMFELTPGVGSSHGETRPCRA 59
Query: 1472 SRGSLLKAA-DTKGKQELAKEEKARELFLKAVEEEQNGALYEAIKFYRRAMQLVPDIEFK 1648
R S+LKAA DTKG+QELAKEEKARELFL+AVEEEQNGALYEAIKFYRRAMQLVPDIEFK
Sbjct: 60 GRSSMLKAAADTKGRQELAKEEKARELFLQAVEEEQNGALYEAIKFYRRAMQLVPDIEFK 119
Query: 1649 ITYTRSPDGDGVGNSYIXXXXXXXXSKTADLLAYFQQQLTFQESVLKLCQPELESSQTHI 1828
ITYTRSPDGDGVG+ YI SK ADLL+YFQQQLT QESVLKLCQPELE+SQTHI
Sbjct: 120 ITYTRSPDGDGVGSGYIEENEDA--SKMADLLSYFQQQLTLQESVLKLCQPELETSQTHI 177
Query: 1829 SVLPMEVLMYIFRWVVSSDLDLRSLEQLSQVCRGFYICARDPEIWRLACLKVWGRSCMKL 2008
SVLPMEVLMYIFRWVVSSDLDLRSLEQLS VCRGFYICARDPEIWRLACLKVWGRSCMKL
Sbjct: 178 SVLPMEVLMYIFRWVVSSDLDLRSLEQLSLVCRGFYICARDPEIWRLACLKVWGRSCMKL 237
Query: 2009 VPYTSWREMFLERPRVRFDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYIRFFPDGHV 2188
VPY SWREMFLERPRVRFDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRY+RFFPDGHV
Sbjct: 238 VPYASWREMFLERPRVRFDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYMRFFPDGHV 297
Query: 2189 MMLTTPEEPSSIVPRFRTQEYQN*GNFYWGHYSLGPKNTN 2308
MMLTTPEEP SIVPR RT+ + GHY L N
Sbjct: 298 MMLTTPEEPPSIVPRLRTRNTRT-DAILLGHYRLSQDADN 336
>ref|NP_001074959.1| F-box only protein 9 isoform 2 [Mus musculus].
Length = 437
Score = 551 bits (1419), Expect = e-156
Identities = 282/339 (83%), Positives = 293/339 (86%), Gaps = 1/339 (0%)
Frame = +2
Query: 1295 AEAEEDCHSDAARAGDDDEKDSSAETDLQAQLQMFRAQWMFELAPGGGSSSLETRPYTAS 1474
AEAEEDCHSDA R GD+ +S AE DLQAQLQMFRAQWMFEL PG GSS ETRP A
Sbjct: 3 AEAEEDCHSDADRVGDEGN-ESPAERDLQAQLQMFRAQWMFELTPGVGSSHGETRPCRAG 61
Query: 1475 RGSLLKAA-DTKGKQELAKEEKARELFLKAVEEEQNGALYEAIKFYRRAMQLVPDIEFKI 1651
R S+LKAA DTKG+QELAKEEKARELFL+AVEEEQNGALYEAIKFYRRAMQLVPDIEFKI
Sbjct: 62 RSSMLKAAADTKGRQELAKEEKARELFLQAVEEEQNGALYEAIKFYRRAMQLVPDIEFKI 121
Query: 1652 TYTRSPDGDGVGNSYIXXXXXXXXSKTADLLAYFQQQLTFQESVLKLCQPELESSQTHIS 1831
TYTRSPDGDGVG+ YI SK ADLL+YFQQQLT QESVLKLCQPELE+SQTHIS
Sbjct: 122 TYTRSPDGDGVGSGYIEENEDA--SKMADLLSYFQQQLTLQESVLKLCQPELETSQTHIS 179
Query: 1832 VLPMEVLMYIFRWVVSSDLDLRSLEQLSQVCRGFYICARDPEIWRLACLKVWGRSCMKLV 2011
VLPMEVLMYIFRWVVSSDLDLRSLEQLS VCRGFYICARDPEIWRLACLKVWGRSCMKLV
Sbjct: 180 VLPMEVLMYIFRWVVSSDLDLRSLEQLSLVCRGFYICARDPEIWRLACLKVWGRSCMKLV 239
Query: 2012 PYTSWREMFLERPRVRFDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYIRFFPDGHVM 2191
PY SWREMFLERPRVRFDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRY+RFFPDGHVM
Sbjct: 240 PYASWREMFLERPRVRFDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYMRFFPDGHVM 299
Query: 2192 MLTTPEEPSSIVPRFRTQEYQN*GNFYWGHYSLGPKNTN 2308
MLTTPEEP SIVPR RT+ + GHY L N
Sbjct: 300 MLTTPEEPPSIVPRLRTRNTRT-DAILLGHYRLSQDADN 337
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 75,555,742
Number of extensions: 2041439
Number of successful extensions: 7890
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7850
Number of HSP's successfully gapped: 2
Length of query: 787
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 678
Effective length of database: 12,343,635
Effective search space: 8368984530
Effective search space used: 8368984530
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012665
(2363 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_258441.1| F-box only protein 9 isoform 2 [Homo sapiens]. 571 e-163
Alignment gi|NP_036479.1| F-box only protein 9 isoform 1 [Homo sapiens]. 569 e-162
Alignment gi|NP_258442.2| F-box only protein 9 isoform 3 [Homo sapiens]. 517 e-146
>ref|NP_258441.1| F-box only protein 9 isoform 2 [Homo sapiens].
Length = 437
Score = 571 bits (1472), Expect = e-163
Identities = 290/340 (85%), Positives = 299/340 (87%), Gaps = 1/340 (0%)
Frame = +2
Query: 1292 MAEAEEDCHSDAARAGDDDEKDSSAETDLQAQLQMFRAQWMFELAPGGGSSSLETRPYTA 1471
MAEAEEDCHSD RA DD+E +S AETDLQAQLQMFRAQWMFELAPG SS+LE RP A
Sbjct: 1 MAEAEEDCHSDTVRADDDEENESPAETDLQAQLQMFRAQWMFELAPGVSSSNLENRPCRA 60
Query: 1472 SRGSLLK-AADTKGKQELAKEEKARELFLKAVEEEQNGALYEAIKFYRRAMQLVPDIEFK 1648
+RGSL K +ADTKGKQE AKEEKARELFLKAVEEEQNGALYEAIKFYRRAMQLVPDIEFK
Sbjct: 61 ARGSLQKTSADTKGKQEQAKEEKARELFLKAVEEEQNGALYEAIKFYRRAMQLVPDIEFK 120
Query: 1649 ITYTRSPDGDGVGNSYIXXXXXXXXSKTADLLAYFQQQLTFQESVLKLCQPELESSQTHI 1828
ITYTRSPDGDGVGNSYI SK ADLL+YFQQQLTFQESVLKLCQPELESSQ HI
Sbjct: 121 ITYTRSPDGDGVGNSYIEDNDDD--SKMADLLSYFQQQLTFQESVLKLCQPELESSQIHI 178
Query: 1829 SVLPMEVLMYIFRWVVSSDLDLRSLEQLSQVCRGFYICARDPEIWRLACLKVWGRSCMKL 2008
SVLPMEVLMYIFRWVVSSDLDLRSLEQLS VCRGFYICARDPEIWRLACLKVWGRSC+KL
Sbjct: 179 SVLPMEVLMYIFRWVVSSDLDLRSLEQLSLVCRGFYICARDPEIWRLACLKVWGRSCIKL 238
Query: 2009 VPYTSWREMFLERPRVRFDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYIRFFPDGHV 2188
VPYTSWREMFLERPRVRFDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYIRFFPDGHV
Sbjct: 239 VPYTSWREMFLERPRVRFDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYIRFFPDGHV 298
Query: 2189 MMLTTPEEPSSIVPRFRTQEYQN*GNFYWGHYSLGPKNTN 2308
MMLTTPEEP SIVPR RT+ + GHY L N
Sbjct: 299 MMLTTPEEPQSIVPRLRTRNTRT-DAILLGHYRLSQDTDN 337
>ref|NP_036479.1| F-box only protein 9 isoform 1 [Homo sapiens].
Length = 447
Score = 569 bits (1467), Expect = e-162
Identities = 289/339 (85%), Positives = 298/339 (87%), Gaps = 1/339 (0%)
Frame = +2
Query: 1295 AEAEEDCHSDAARAGDDDEKDSSAETDLQAQLQMFRAQWMFELAPGGGSSSLETRPYTAS 1474
AEAEEDCHSD RA DD+E +S AETDLQAQLQMFRAQWMFELAPG SS+LE RP A+
Sbjct: 12 AEAEEDCHSDTVRADDDEENESPAETDLQAQLQMFRAQWMFELAPGVSSSNLENRPCRAA 71
Query: 1475 RGSLLK-AADTKGKQELAKEEKARELFLKAVEEEQNGALYEAIKFYRRAMQLVPDIEFKI 1651
RGSL K +ADTKGKQE AKEEKARELFLKAVEEEQNGALYEAIKFYRRAMQLVPDIEFKI
Sbjct: 72 RGSLQKTSADTKGKQEQAKEEKARELFLKAVEEEQNGALYEAIKFYRRAMQLVPDIEFKI 131
Query: 1652 TYTRSPDGDGVGNSYIXXXXXXXXSKTADLLAYFQQQLTFQESVLKLCQPELESSQTHIS 1831
TYTRSPDGDGVGNSYI SK ADLL+YFQQQLTFQESVLKLCQPELESSQ HIS
Sbjct: 132 TYTRSPDGDGVGNSYIEDNDDD--SKMADLLSYFQQQLTFQESVLKLCQPELESSQIHIS 189
Query: 1832 VLPMEVLMYIFRWVVSSDLDLRSLEQLSQVCRGFYICARDPEIWRLACLKVWGRSCMKLV 2011
VLPMEVLMYIFRWVVSSDLDLRSLEQLS VCRGFYICARDPEIWRLACLKVWGRSC+KLV
Sbjct: 190 VLPMEVLMYIFRWVVSSDLDLRSLEQLSLVCRGFYICARDPEIWRLACLKVWGRSCIKLV 249
Query: 2012 PYTSWREMFLERPRVRFDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYIRFFPDGHVM 2191
PYTSWREMFLERPRVRFDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYIRFFPDGHVM
Sbjct: 250 PYTSWREMFLERPRVRFDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYIRFFPDGHVM 309
Query: 2192 MLTTPEEPSSIVPRFRTQEYQN*GNFYWGHYSLGPKNTN 2308
MLTTPEEP SIVPR RT+ + GHY L N
Sbjct: 310 MLTTPEEPQSIVPRLRTRNTRT-DAILLGHYRLSQDTDN 347
>ref|NP_258442.2| F-box only protein 9 isoform 3 [Homo sapiens].
Length = 403
Score = 517 bits (1332), Expect = e-146
Identities = 263/306 (85%), Positives = 270/306 (88%), Gaps = 1/306 (0%)
Frame = +2
Query: 1394 MFRAQWMFELAPGGGSSSLETRPYTASRGSLLK-AADTKGKQELAKEEKARELFLKAVEE 1570
MFRAQWMFELAPG SS+LE RP A+RGSL K +ADTKGKQE AKEEKARELFLKAVEE
Sbjct: 1 MFRAQWMFELAPGVSSSNLENRPCRAARGSLQKTSADTKGKQEQAKEEKARELFLKAVEE 60
Query: 1571 EQNGALYEAIKFYRRAMQLVPDIEFKITYTRSPDGDGVGNSYIXXXXXXXXSKTADLLAY 1750
EQNGALYEAIKFYRRAMQLVPDIEFKITYTRSPDGDGVGNSYI SK ADLL+Y
Sbjct: 61 EQNGALYEAIKFYRRAMQLVPDIEFKITYTRSPDGDGVGNSYIEDNDDD--SKMADLLSY 118
Query: 1751 FQQQLTFQESVLKLCQPELESSQTHISVLPMEVLMYIFRWVVSSDLDLRSLEQLSQVCRG 1930
FQQQLTFQESVLKLCQPELESSQ HISVLPMEVLMYIFRWVVSSDLDLRSLEQLS VCRG
Sbjct: 119 FQQQLTFQESVLKLCQPELESSQIHISVLPMEVLMYIFRWVVSSDLDLRSLEQLSLVCRG 178
Query: 1931 FYICARDPEIWRLACLKVWGRSCMKLVPYTSWREMFLERPRVRFDGVYISKTTYIRQGEQ 2110
FYICARDPEIWRLACLKVWGRSC+KLVPYTSWREMFLERPRVRFDGVYISKTTYIRQGEQ
Sbjct: 179 FYICARDPEIWRLACLKVWGRSCIKLVPYTSWREMFLERPRVRFDGVYISKTTYIRQGEQ 238
Query: 2111 SLDGFYRAWHQVEYYRYIRFFPDGHVMMLTTPEEPSSIVPRFRTQEYQN*GNFYWGHYSL 2290
SLDGFYRAWHQVEYYRYIRFFPDGHVMMLTTPEEP SIVPR RT+ + GHY L
Sbjct: 239 SLDGFYRAWHQVEYYRYIRFFPDGHVMMLTTPEEPQSIVPRLRTRNTRT-DAILLGHYRL 297
Query: 2291 GPKNTN 2308
N
Sbjct: 298 SQDTDN 303
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 88,995,886
Number of extensions: 2427142
Number of successful extensions: 10003
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 9955
Number of HSP's successfully gapped: 3
Length of query: 787
Length of database: 18,297,164
Length adjustment: 111
Effective length of query: 676
Effective length of database: 14,638,160
Effective search space: 9895396160
Effective search space used: 9895396160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012665
(2363 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 2258 0.0
>Sscrofa_Chr07
|| Length = 134764511
Score = 2258 bits (1139), Expect = 0.0
Identities = 1178/1187 (99%), Gaps = 3/1187 (0%)
Strand = Plus / Plus
Query: 47 gcattagta-gatttcccgattaaactaaagtatatgagatt-aaactctga-ctttgcg 103
||||||||| ||| ||| || |||||||| |||||||||||| ||||||||| |||||||
Sbjct: 134465137 gcattagtaagatctccagaataaactaatgtatatgagatttaaactctgaactttgcg 134465196
Query: 104 gaacgtaggtaggatcttggaatcctgatatctatttctattagctggtagaaactttag 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134465197 gaacgtaggtaggatcttggaatcctgatatctatttctattagctggtagaaactttag 134465256
Query: 164 aaacttcatgaatgtttactgaatgaagggaagcagttcttaagactgtaggcttacaca 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134465257 aaacttcatgaatgtttactgaatgaagggaagcagttcttaagactgtaggcttacaca 134465316
Query: 224 gagaagagagcatgcaaaattcagtatttaaaacaatgtaaagtgtggggaaataaaacg 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134465317 gagaagagagcatgcaaaattcagtatttaaaacaatgtaaagtgtggggaaataaaacg 134465376
Query: 284 ccgcctaaaaaattggtgcctctgtggacatgaaatcagatgtttgggctttaaaaggtg 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134465377 ccgcctaaaaaattggtgcctctgtggacatgaaatcagatgtttgggctttaaaaggtg 134465436
Query: 344 gggcgaggaccagcgtctgcggcctgcgctctatgcggaacggcggactacaaatcccag 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134465437 gggcgaggaccagcgtctgcggcctgcgctctatgcggaacggcggactacaaatcccag 134465496
Query: 404 tgtgcagcgagcatggtctccgccggactcggggggttcgggagcgtggaggcaacgtcc 463
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134465497 tgtgcagagagcacggtctccgccggactcggggggttcgggagcgtggaggcaacgtcc 134465556
Query: 464 ttaccgcgttgcatgatggaatctgtagtgagatgtgcgttgcggaagttgacttttcct 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134465557 ttaccgcgttgcatgatggaatctgtagtgagatgtgcgttgcggaagttgacttttcct 134465616
Query: 524 tccctccgctgctcccctgagcacatatcttcctcaatctccaggcctgtatttttaaaa 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134465617 tccctccgctgctcccctgagcacatatcttcctcaatctccaggcctgtatttttaaaa 134465676
Query: 584 agttcagtcgttataactgcctgtgaccatagtggagtttcggcgattccctgcagtcct 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134465677 agttcagtcgttataactgcctgtgaccatagtggagtttcggcgattccctgcagtcct 134465736
Query: 644 ggagaggggctctagctgcagtcgccgagaagaccatgtagccaccgtcacgagcgtcca 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134465737 ggagaggggctctagctgcagtcgccgagaagaccatgtagccaccgtcacgagcgtcca 134465796
Query: 704 gtcggaagcttcttagagtctcaaatctaaatttgagttaacgcctggtcaagtttgcat 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134465797 gtcggaagcttcttagagtctcaaatctaaatttgagttaacgcctggtcaagtttgcat 134465856
Query: 764 aagttcgctgggccgaatgcttggttgagtttggtcttcggtaaaccagtgtcctcacct 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134465857 aagttcgctgggccgaatgcttggttgagtttggtcttcggtaaaccagtgtcctcacct 134465916
Query: 824 gggctgtgttcctcgccctctgcggtgcaagcactgcccgaggctccgagctctgctgcc 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134465917 gggctgtgttcctcgccctctgcggtgcaagcactgcccgaggctccgagctctgctgcc 134465976
Query: 884 cacgcgggcggcggcggtggcggcactgcactgcgcatgctctgttccggcgcaggttac 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134465977 cacgcgggcggcggcggtggcggcactgcactgcgcatgctctgttccggcgcaggttac 134466036
Query: 944 cgcagcacccgggccgcttagctgcagcgtcgaggtctccagcagggcaggcactcctgt 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134466037 cgcagcacccgggccgcttagctgcagcgtcgaggtctccagcagggcaggcactcctgt 134466096
Query: 1004 gcgtgcagtcctcggcctcggcgggcctccggcgtccttgcgctctgctagtcccggctg 1063
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134466097 gcgtgcagtcctcggcctcggcgggcctccggcgtccttgcgctctgctagtcccggctg 134466156
Query: 1064 gctccgcagcgcgcccagatctggccccctgccccacgaagatggctgccgtacgccggg 1123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134466157 gctccgcagcgcgcccagatctggccccctgccccacgaagatggctgccgtacgccggg 134466216
Query: 1124 cccgcagttactgccgctgcctggtgcgattctccgaccgagaactctgctaagccgcgc 1183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134466217 cccgcagttactgccgctgcctggtgcgattctccgaccgagaactctgctaagccgcgc 134466276
Query: 1184 cgcagcaaacggcaggagtagacgccggacacccagcgcacctccta 1230
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134466277 cgcagcaaacggcaggagtagacgccggacacccagcgcacctccta 134466323
Score = 313 bits (158), Expect = 2e-82
Identities = 158/158 (100%)
Strand = Plus / Plus
Query: 1380 aggcacaactccagatgttccgagctcagtggatgtttgaactcgccccaggtggaggct 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134473583 aggcacaactccagatgttccgagctcagtggatgtttgaactcgccccaggtggaggct 134473642
Query: 1440 cgagcagtttagaaactcgaccttacacagcatcaagaggttctctactgaaagcagcag 1499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134473643 cgagcagtttagaaactcgaccttacacagcatcaagaggttctctactgaaagcagcag 134473702
Query: 1500 ataccaaaggaaagcaggaactggcaaaagaagaaaag 1537
||||||||||||||||||||||||||||||||||||||
Sbjct: 134473703 ataccaaaggaaagcaggaactggcaaaagaagaaaag 134473740
Score = 272 bits (137), Expect = 8e-70
Identities = 137/137 (100%)
Strand = Plus / Plus
Query: 1696 catcgaagatgaagatgaggatgaggacagcaagacggcggatctcctggcctacttcca 1755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134479761 catcgaagatgaagatgaggatgaggacagcaagacggcggatctcctggcctacttcca 134479820
Query: 1756 gcagcagctcacctttcaggagtctgtgctcaaactgtgtcagcctgagctcgagagcag 1815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134479821 gcagcagctcacctttcaggagtctgtgctcaaactgtgtcagcctgagctcgagagcag 134479880
Query: 1816 tcagactcacatctcag 1832
|||||||||||||||||
Sbjct: 134479881 tcagactcacatctcag 134479897
Score = 242 bits (122), Expect = 7e-61
Identities = 122/122 (100%)
Strand = Plus / Plus
Query: 1946 agagatcctgagatatggcgtttggcctgcttaaaagtttggggcagaagctgcatgaaa 2005
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134484458 agagatcctgagatatggcgtttggcctgcttaaaagtttggggcagaagctgcatgaaa 134484517
Query: 2006 cttgttccctacacatcctggagagagatgtttttagaaaggccccgcgttcggtttgat 2065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134484518 cttgttccctacacatcctggagagagatgtttttagaaaggccccgcgttcggtttgat 134484577
Query: 2066 gg 2067
||
Sbjct: 134484578 gg 134484579
Score = 234 bits (118), Expect = 2e-58
Identities = 118/118 (100%)
Strand = Plus / Plus
Query: 1830 cagtgctgccgatggaggtgctaatgtacatcttccgatgggttgtgtcgagcgacttgg 1889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134480670 cagtgctgccgatggaggtgctaatgtacatcttccgatgggttgtgtcgagcgacttgg 134480729
Query: 1890 acctcagatcattagagcagttgtcacaggtgtgcagaggattctatatctgtgccag 1947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134480730 acctcagatcattagagcagttgtcacaggtgtgcagaggattctatatctgtgccag 134480787
Score = 202 bits (102), Expect = 6e-49
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 1594 agccatcaagttttatcgtagggctatgcaacttgtacctgatatagagttcaagattac 1653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134477466 agccatcaagttttatcgtagggctatgcaacttgtacctgatatagagttcaagattac 134477525
Query: 1654 ttatacccggtctccagatggtgatggcgttggaaacagcta 1695
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134477526 ttatacccggtctccagatggtgatggcgttggaaacagcta 134477567
Score = 192 bits (97), Expect = 6e-46
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 2066 ggcgtgtatatcagtaaaactacatatattcgtcaaggggaacagtctcttgatggtttc 2125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134484781 ggcgtgtatatcagtaaaactacatatattcgtcaaggggaacagtctcttgatggtttc 134484840
Query: 2126 tatagagcctggcaccaagtggaatattacaggtaca 2162
|||||||||||||||||||||||||||||||||||||
Sbjct: 134484841 tatagagcctggcaccaagtggaatattacaggtaca 134484877
Score = 180 bits (91), Expect = 2e-42
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 1294 ggcagaagctgaggaagattgtcattctgatgctgccagggcaggagatgatgatgaaaa 1353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134470042 ggcagaagctgaggaagattgtcattctgatgctgccagggcaggagatgatgatgaaaa 134470101
Query: 1354 ggacagctctgctgagacagatctgcaggca 1384
|||||||||||||||||||||||||||||||
Sbjct: 134470102 ggacagctctgctgagacagatctgcaggca 134470132
Score = 145 bits (73), Expect = 1e-31
Identities = 95/101 (94%), Gaps = 1/101 (0%)
Strand = Plus / Plus
Query: 2154 acaggtacatccggttctttccggacggccacgtgatgatgctgaccaccccggaagagc 2213
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 134485512 acaggtacatccggttctttccggacggccacgtgatgatgctgaccaccccggaggagc 134485571
Query: 2214 cctcgtccatcgttccccgctttagaacccaggaataccag 2254
| ||||||||||||| ||||| |||| |||||||||||||
Sbjct: 134485572 ctccgtccatcgttccacgcttaagaa-ccaggaataccag 134485611
Score = 119 bits (60), Expect = 7e-24
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 1536 aggctcgtgaactcttcctaaaagcagtagaagaagagcaaaatggagctctctatgaag 1595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134474904 aggctcgtgaactcttcctaaaagcagtagaagaagagcaaaatggagctctctatgaag 134474963
Score = 119 bits (60), Expect = 7e-24
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 1536 aggctcgtgaactcttcctaaaagcagtagaagaagagcaaaatggagctctctatgaag 1595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134564194 aggctcgtgaactcttcctaaaagcagtagaagaagagcaaaatggagctctctatgaag 134564253
Score = 87.7 bits (44), Expect = 3e-14
Identities = 75/84 (89%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 2079 gtaaaactacatatattcgtcaaggggaacagtctcttgatggtttctatagagcctggc 2138
||||||| ||||| || |||||||| |||||||||||||||||||| || || ||||||
Sbjct: 134487940 gtaaaaccccatatgtttgtcaagggaaacagtctcttgatggtttccat-gatcctggc 134487998
Query: 2139 accaagtggaatattacaggtaca 2162
||||||||||||||| ||||||||
Sbjct: 134487999 accaagtggaatattgcaggtaca 134488022
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 60,936,437
Number of extensions: 532
Number of successful extensions: 532
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 531
Number of HSP's successfully gapped: 12
Length of query: 2363
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2341
Effective length of database: 2,808,408,574
Effective search space: 6574484471734
Effective search space used: 6574484471734
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)