Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012666
(2402 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_545592.2| PREDICTED: similar to CASP8 and FADD-like apopt... 814 0.0
Alignment gi|XP_858289.1| PREDICTED: similar to CASP8 and FADD-like apopt... 707 0.0
Alignment gi|XP_858329.1| PREDICTED: similar to CASP8 and FADD-like apopt... 376 e-104
Alignment gi|NP_001041494.1| caspase-8 [Canis lupus familiaris]. 140 6e-33
Alignment gi|XP_545593.2| PREDICTED: similar to caspase 10 isoform a prep... 105 2e-22
Alignment gi|XP_545022.2| PREDICTED: similar to caspase 6 isoform alpha p... 75 2e-13
Alignment gi|NP_001182080.1| caspase-2 [Canis lupus familiaris]. 70 7e-12
Alignment gi|NP_001003042.1| caspase-3 precursor [Canis lupus familiaris]. 70 1e-11
Alignment gi|XP_544026.2| PREDICTED: similar to caspase 7 isoform delta [... 64 9e-10
Alignment gi|NP_001026803.1| caspase-9 [Canis lupus familiaris]. 54 9e-07
>ref|XP_545592.2| PREDICTED: similar to CASP8 and FADD-like apoptosis regulator
precursor (Cellular FLICE-like inhibitory protein)
(c-FLIP) (Caspase-eight-related protein) (Casper)
(Caspase-like apoptosis regulatory protein) (CLARP)
(MACH-related inducer of toxicity) (MRIT) (C... iso
[Canis familiaris].
Length = 509
Score = 814 bits (2103), Expect = 0.0
Identities = 405/509 (79%), Positives = 446/509 (87%)
Frame = +1
Query: 112 MKSVPSWASVDWTRFLLLPFLGMTLYRMSAEVIHQVEEALDEDEKEILLFLCRDIAADVV 291
MK+ SW +DW+ LLL F GMTLYRMSAEVIHQVEEALDEDEKE+LLFLCRD+AADV
Sbjct: 1 MKTEASWPFIDWSGVLLLQFFGMTLYRMSAEVIHQVEEALDEDEKEMLLFLCRDVAADVA 60
Query: 292 PLNVRDLLDILRERGKLSLVSLAELLYRVRRFDLLKRILKMDRRTVEAQLLRHPHLISDY 471
PL VRDLLDIL ERG+LS + LAELLYRVRRFDLLKRI KMDRR VEA LLRHP LISDY
Sbjct: 61 PLTVRDLLDILSERGELSAMGLAELLYRVRRFDLLKRIFKMDRRAVEAHLLRHPRLISDY 120
Query: 472 RVLMMEIGEGLDKSDVSSLIFLMRDHISRSKMAKDKSFLDLVIELEKLNLVAPDHLDLLE 651
RVLM EIG+ LDKSDVSSLIFLMRDH+ R+K+AKDKSFLDLVIELEKLNL+APD LDLLE
Sbjct: 121 RVLMTEIGDDLDKSDVSSLIFLMRDHMGRNKVAKDKSFLDLVIELEKLNLIAPDQLDLLE 180
Query: 652 KCLRNIHRIDLKTKIQKYKQSAQGAETNYVNALQASLPNLSIKDPSYNLRLQNGRSKEQS 831
KCL+NIHRIDLKTKIQKYKQSAQGA TNY NALQAS PNLS+KDPS NLRLQNGRSKEQ
Sbjct: 181 KCLKNIHRIDLKTKIQKYKQSAQGAGTNYTNALQASFPNLSLKDPSCNLRLQNGRSKEQR 240
Query: 832 LILGHPDFQRDPVKTSIQESGAFLLQHVPEERYKMQSKPLGICLIIDCVGNDTDVLRDTF 1011
L + D QR+ VK S+QESG FL +H+PEERY+MQSKPLGICLIIDC+GNDTD LRDTF
Sbjct: 241 LSVRQLDLQRESVKASVQESGPFLPRHIPEERYRMQSKPLGICLIIDCIGNDTDFLRDTF 300
Query: 1012 SSLGYEVQYFLYLKVEQISKILRKVARMPQHQDYDSFVCVLVSRGGSQSVFGVDKTLSGF 1191
+SLGYEVQYFLYL V+ I +ILR+VARMPQHQDYDSFVCVLVSRGGSQSVFGVD T SGF
Sbjct: 301 TSLGYEVQYFLYLNVDSIIQILRQVARMPQHQDYDSFVCVLVSRGGSQSVFGVDHTNSGF 360
Query: 1192 PLDHIRRMFMADVCPTLLGKPKLFFIQIYVTSEGQLEDSSFLEVDGPSVKSMDSKARQPG 1371
PLD +RRMFM D CP LLGKPKLFFIQ YV SEGQ++ SSFLEVDGP V +++SKA+QPG
Sbjct: 361 PLDQVRRMFMGDACPFLLGKPKLFFIQNYVVSEGQMDSSSFLEVDGPEVNNVESKAKQPG 420
Query: 1372 TCTVHREADFFWSLCKADVSLLERPXXXXXVYLQCLSQKLGKERKVSLLELHVDLNSKVY 1551
CT+HREADF WSLCKADVSLLE+ +YL+CLSQKLG++R+ LLELH +LNS VY
Sbjct: 421 PCTIHREADFLWSLCKADVSLLEQSSGSPSLYLKCLSQKLGQDRRRPLLELHTELNSSVY 480
Query: 1552 DWNSRVSAKERYYVRLQHTLRKKVILSCK 1638
DWNSRVSAKERYYV LQHTLRKK+ILSCK
Sbjct: 481 DWNSRVSAKERYYVWLQHTLRKKLILSCK 509
>ref|XP_858289.1| PREDICTED: similar to CASP8 and FADD-like apoptosis regulator
precursor (Cellular FLICE-like inhibitory protein)
(c-FLIP) (Caspase-eight-related protein) (Casper)
(Caspase-like apoptosis regulatory protein) (CLARP)
(MACH-related inducer of toxicity) (MRIT) (C... iso
[Canis familiaris].
Length = 445
Score = 707 bits (1825), Expect = 0.0
Identities = 355/464 (76%), Positives = 394/464 (84%)
Frame = +1
Query: 112 MKSVPSWASVDWTRFLLLPFLGMTLYRMSAEVIHQVEEALDEDEKEILLFLCRDIAADVV 291
MK+ SW +DW+ LLL F GMTLYRMSAEVIHQVEEALDEDEKE+LLFLCRD+AADV
Sbjct: 1 MKTEASWPFIDWSGVLLLQFFGMTLYRMSAEVIHQVEEALDEDEKEMLLFLCRDVAADVA 60
Query: 292 PLNVRDLLDILRERGKLSLVSLAELLYRVRRFDLLKRILKMDRRTVEAQLLRHPHLISDY 471
PL VRDLLDIL ERG+LS + LAELLYRVRRFDLLKRI KMDRR VEA LLRHP LISDY
Sbjct: 61 PLTVRDLLDILSERGELSAMGLAELLYRVRRFDLLKRIFKMDRRAVEAHLLRHPRLISDY 120
Query: 472 RVLMMEIGEGLDKSDVSSLIFLMRDHISRSKMAKDKSFLDLVIELEKLNLVAPDHLDLLE 651
RVLM EIG+ LDKSDVSSLIFLMRDH+ R+K+AKDKSFLDLVIELEKLNL+APD LDLLE
Sbjct: 121 RVLMTEIGDDLDKSDVSSLIFLMRDHMGRNKVAKDKSFLDLVIELEKLNLIAPDQLDLLE 180
Query: 652 KCLRNIHRIDLKTKIQKYKQSAQGAETNYVNALQASLPNLSIKDPSYNLRLQNGRSKEQS 831
KCL+NIHRIDLKTKIQKYKQSAQGA TNY NALQAS PNLS+KDPS NLR+++
Sbjct: 181 KCLKNIHRIDLKTKIQKYKQSAQGAGTNYTNALQASFPNLSLKDPSCNLRVKS------- 233
Query: 832 LILGHPDFQRDPVKTSIQESGAFLLQHVPEERYKMQSKPLGICLIIDCVGNDTDVLRDTF 1011
VK S+QESG FL +H+PEERY+MQSKPLGICLIIDC+GNDTD LRDTF
Sbjct: 234 ------------VKASVQESGPFLPRHIPEERYRMQSKPLGICLIIDCIGNDTDFLRDTF 281
Query: 1012 SSLGYEVQYFLYLKVEQISKILRKVARMPQHQDYDSFVCVLVSRGGSQSVFGVDKTLSGF 1191
+SLGYEVQYFLYL V+ I +ILR+VARMPQHQDYDSFVCVLVSRGGSQSVFGVD T SGF
Sbjct: 282 TSLGYEVQYFLYLNVDSIIQILRQVARMPQHQDYDSFVCVLVSRGGSQSVFGVDHTNSGF 341
Query: 1192 PLDHIRRMFMADVCPTLLGKPKLFFIQIYVTSEGQLEDSSFLEVDGPSVKSMDSKARQPG 1371
PLD +RRMFM D CP LLGKPKLFFIQ YV SEGQ++ SSFLEVDGP V +++SKA+QPG
Sbjct: 342 PLDQVRRMFMGDACPFLLGKPKLFFIQNYVVSEGQMDSSSFLEVDGPEVNNVESKAKQPG 401
Query: 1372 TCTVHREADFFWSLCKADVSLLERPXXXXXVYLQCLSQKLGKER 1503
CT+HREADF WSLCKADVSLLE+ +YL+CLSQKLG++R
Sbjct: 402 PCTIHREADFLWSLCKADVSLLEQSSGSPSLYLKCLSQKLGQDR 445
>ref|XP_858329.1| PREDICTED: similar to CASP8 and FADD-like apoptosis regulator
precursor (Cellular FLICE-like inhibitory protein)
(c-FLIP) (Caspase-eight-related protein) (Casper)
(Caspase-like apoptosis regulatory protein) (CLARP)
(MACH-related inducer of toxicity) (MRIT) (C... iso
[Canis familiaris].
Length = 241
Score = 376 bits (966), Expect = e-104
Identities = 191/231 (82%), Positives = 206/231 (89%)
Frame = +1
Query: 112 MKSVPSWASVDWTRFLLLPFLGMTLYRMSAEVIHQVEEALDEDEKEILLFLCRDIAADVV 291
MK+ SW +DW+ LLL F GMTLYRMSAEVIHQVEEALDEDEKE+LLFLCRD+AADV
Sbjct: 1 MKTEASWPFIDWSGVLLLQFFGMTLYRMSAEVIHQVEEALDEDEKEMLLFLCRDVAADVA 60
Query: 292 PLNVRDLLDILRERGKLSLVSLAELLYRVRRFDLLKRILKMDRRTVEAQLLRHPHLISDY 471
PL VRDLLDIL ERG+LS + LAELLYRVRRFDLLKRI KMDRR VEA LLRHP LISDY
Sbjct: 61 PLTVRDLLDILSERGELSAMGLAELLYRVRRFDLLKRIFKMDRRAVEAHLLRHPRLISDY 120
Query: 472 RVLMMEIGEGLDKSDVSSLIFLMRDHISRSKMAKDKSFLDLVIELEKLNLVAPDHLDLLE 651
RVLM EIG+ LDKSDVSSLIFLMRDH+ R+K+AKDKSFLDLVIELEKLNL+APD LDLLE
Sbjct: 121 RVLMTEIGDDLDKSDVSSLIFLMRDHMGRNKVAKDKSFLDLVIELEKLNLIAPDQLDLLE 180
Query: 652 KCLRNIHRIDLKTKIQKYKQSAQGAETNYVNALQASLPNLSIKDPSYNLRL 804
KCL+NIHRIDLKTKIQKYKQSAQGA TNY NALQAS PNLS+KDPS NLR+
Sbjct: 181 KCLKNIHRIDLKTKIQKYKQSAQGAGTNYTNALQASFPNLSLKDPSCNLRV 231
>ref|NP_001041494.1| caspase-8 [Canis lupus familiaris].
Length = 486
Score = 140 bits (353), Expect = 6e-33
Identities = 136/508 (26%), Positives = 229/508 (45%), Gaps = 33/508 (6%)
Frame = +1
Query: 199 AEVIHQVEEALDEDEKEILLFLCRDIAADVVPLNVRD---LLDILRERGKL---SLVSLA 360
++ ++ + E LD DE L FL D ++D L L+E+ L +L L
Sbjct: 4 SKCLYNIGEQLDSDELASLKFLSLDYIPQKKQEPIKDPLMLFQRLQEKRMLEESNLFFLK 63
Query: 361 ELLYRVRRFDLLKRILKMDRRTVEAQL-LRHPHLISDYRVLMMEIGEGLDKSDVSSLIFL 537
ELL+R+ R DLL L + ++ +L + IS YRV++ +I E + K ++ S FL
Sbjct: 64 ELLFRINRLDLLMTYLDTSKEDMQQELQIPGRAQISAYRVMLFQISEDVSKLELKSFKFL 123
Query: 538 MRDHISRSKMAKDKSFLDLVIELEKLNLVAPDHLDLLEKCLRNIHRIDLKTKIQKYKQSA 717
+ ISR K+ D + LD+ IE+EK ++ +LD L++ I++ LK KI Y++
Sbjct: 124 LSREISRCKLDDDLNLLDIFIEMEKRVILGERNLDTLKRICDQINKSLLK-KITDYEELN 182
Query: 718 QGAETNYVNALQASLPNLSIKDPSYNLRLQNGRSKEQSLILGHPDFQRDPVKTSIQESGA 897
+ N LQ SL +S +R + + S LG D++ +
Sbjct: 183 REQTMN----LQRSLDEISNDMSQLPIREGSVKILPMSDSLGEQDYESE----------- 227
Query: 898 FLLQHVPEERYKMQSKPLGICLII-------------------DCVGN--DTDVLRDTFS 1014
++ Y+M+SKP G CLI D G D D L TFS
Sbjct: 228 -----TSDKVYRMKSKPRGYCLIFNNYDFSVARREVPKLQSIKDRNGTDLDADALSKTFS 282
Query: 1015 SLGYEVQYFLYLKVEQISKILRKVARMPQHQDYDSFVCVLVSRGGSQSVFGVDKTLSGFP 1194
L +E+ +F ++I ++L+ M H D F+C ++S G ++G D + P
Sbjct: 283 ELHFEIVHFKDATAKKICEVLQSYQSM-DHSSKDCFICCILSHGDKGIIYGSDGQEA--P 339
Query: 1195 LDHIRRMFMADVCPTLLGKPKLFFIQIYVTSEGQLEDSSFLEVDGPSVKS---MDSKARQ 1365
+ + F CP+L GKPK+FFIQ + + +E D ++ MDS ++
Sbjct: 340 IYELTSYFTGSKCPSLAGKPKIFFIQ--ACQGDKYQKGIAVETDSEQKEAYLEMDSSYQK 397
Query: 1366 PGTCTVHREADFFWSLCKADVSLLERPXXXXXVYLQCLSQKLGKE--RKVSLLELHVDLN 1539
+ +ADF + + + R Y+Q L Q L + R +L + ++N
Sbjct: 398 R---YIPEDADFLLGMATVNNCVSYRNPMEGTWYIQSLCQSLRERCPRGEDILTILTEVN 454
Query: 1540 SKVYDWNSRVSAKERYYVRLQHTLRKKV 1623
+V + + R + ++ + TLRKK+
Sbjct: 455 FEVSNKDDRKNMGKQ-MPQPTFTLRKKL 481
>ref|XP_545593.2| PREDICTED: similar to caspase 10 isoform a preproprotein [Canis
familiaris].
Length = 484
Score = 105 bits (263), Expect = 2e-22
Identities = 128/494 (25%), Positives = 208/494 (42%), Gaps = 24/494 (4%)
Frame = +1
Query: 217 VEEALDEDEKEILLFLCRDIAADVVPLNVRDLLDILRERGKLSLVS------LAELLYRV 378
++ L+ + E L FLCRD + DI L+S LAELLY +
Sbjct: 31 IDSKLEIQDVEGLKFLCRDFVSHKKLEKSNSASDIFDHLLAEELLSEEDPFFLAELLYII 90
Query: 379 RRFDLLKRILKMDRRTVEAQLLRHPHLISDYRVLMMEIGEGLDKSDVSSLIFLMRDHISR 558
++ LL R L + VE+ LL +S +R L+ E+ E + ++ +IFL RD + +
Sbjct: 91 KQNSLL-RYLNQSKEQVES-LLPTRRRVSLFRNLLYELSESIGSENLKDMIFLQRDSMPK 148
Query: 559 SKMAKDKSFLDLVIELEKLNLVAPDHLDLLEKCLRNIHRIDLKTKIQKYKQSAQGAETNY 738
+++ L + LEK L+ D+L LLE R + +L KI++YK+
Sbjct: 149 TQLTP----LSFLAYLEKQALIDEDNLGLLEDLCRKVVP-NLIRKIERYKREKAS----- 198
Query: 739 VNALQASLPNLSIKDPSYNLRLQNGRSKEQSLILGHPDFQRDPVKTSIQESGAFLLQHVP 918
+ P + ++ KE+ L F + Q GA +V
Sbjct: 199 -----------EVVTPPVDTETESLHQKEEEL------FSPSDIN---QFHGALSEANV- 237
Query: 919 EERYKMQSKPLGICLII---------DCVGNDTDV--LRDTFSSLGYEVQYFLYLKVEQI 1065
Y+M K G C+I+ D G D D L F LG+ V + + +
Sbjct: 238 ---YRMDRKHRGHCVIVNNHTFAKMPDRPGTDKDAECLSRVFQWLGFSVHVYKNVTKGHL 294
Query: 1066 SKILRKVARMPQHQDYDSFVCVLVSRGGSQSVFGVDKTLSGFPLDHIRRMFMADVCPTLL 1245
++L++ P H D D FV +++ G +V+ D TL P+ I F A CP L
Sbjct: 295 DEVLQEFKCHPDHVDGDCFVFCVLTHGKFGAVYSSDGTL--VPIREIMSHFTAQKCPGLA 352
Query: 1246 GKPKLFFIQIYVTSEGQ-LEDSSFLEVDGPSVKSMDSKARQPGTCTVHREADFFWSLCKA 1422
KPKLFFIQ +G+ ++ +E D + + + + ++ ADF L
Sbjct: 353 HKPKLFFIQ---ACQGKGIQTPVSIEADAVNPEHVSPSLKD----SIPDAADFLLGLATV 405
Query: 1423 DVSLLERPXXXXXVYLQCLSQKLGKERKVSLLELHVDLNSKVYDWNSRVSAKE------R 1584
+ R Y+Q L +L SL+ H D+ S + N+ VS + +
Sbjct: 406 PGYVSFRHVEKGSWYIQSLCNRL-----KSLVPRHEDILSILTAVNNDVSQQADKQGTMK 460
Query: 1585 YYVRLQHTLRKKVI 1626
+ +TLRKK++
Sbjct: 461 QMPQPAYTLRKKLV 474
>ref|XP_545022.2| PREDICTED: similar to caspase 6 isoform alpha preproprotein [Canis
familiaris].
Length = 293
Score = 75.5 bits (184), Expect = 2e-13
Identities = 69/246 (28%), Positives = 104/246 (42%), Gaps = 22/246 (8%)
Frame = +1
Query: 877 SIQESGAFLLQHV--PEERYKMQSKPLGICLIIDC--------------VGNDTDVLRDT 1008
++ E+ AF + + PEE+YKM K GI LI + D D L
Sbjct: 18 NVTETDAFYKREMFDPEEKYKMDHKRRGIALIFNHERFFWHLTLPDRRGTSADRDNLVRR 77
Query: 1009 FSSLGYEVQYFLYLKVEQISKILRKVARMPQHQDYDSFVCVLVSRGGSQSVFGVDKTLSG 1188
FS LG+EV+ F LK E++ + + A H D D F+CV +S G ++ D +
Sbjct: 78 FSELGFEVKCFNDLKAEELLLKIHE-ASTSSHIDADCFLCVFLSHGEGNHIYAYDAKIE- 135
Query: 1189 FPLDHIRRMFMADVCPTLLGKPKLFFIQIYVTSEGQLEDSSFLEVD-----GPSVKSMDS 1353
+ + +F D C +L+GKPK+F IQ G D L +D ++ +
Sbjct: 136 --IQTLTGLFKGDKCQSLVGKPKIFIIQ---ACRGDQHDVPVLPLDVVDHRTDKLEDNVT 190
Query: 1354 KARQPGTCTVHREADFFWSLCKADVSLLERPXXXXXVYLQCLSQKLGK-ERKVSLLELHV 1530
+ T+ ADF A+ R Y+Q L + LGK + EL
Sbjct: 191 EVDAASVYTLPAGADFLMCYSVAEGYYSHRETVNGSWYIQDLCEMLGKFGSSLEFTELLT 250
Query: 1531 DLNSKV 1548
+N KV
Sbjct: 251 LVNRKV 256
>ref|NP_001182080.1| caspase-2 [Canis lupus familiaris].
Length = 452
Score = 70.5 bits (171), Expect = 7e-12
Identities = 81/299 (27%), Positives = 124/299 (41%), Gaps = 20/299 (6%)
Frame = +1
Query: 436 QLLRHPHLISDYRVLMMEIGEGLDKSDVSSLIFLMRDHISRSKMAKDKSFLDLVIELEKL 615
+ L+ ++ ++L+ E+ E L + D+ +L MR+HI AK F V L L
Sbjct: 38 EALKKNRVVLAKQLLLSELLEHLLEKDIITLE--MREHIQ----AKVGGFSQNVELLNLL 91
Query: 616 NLVAPDHLDLLEKCLRNIHRIDLK----TKIQKYKQSAQGAETNYVNALQASLPNLSIKD 783
P D LR + L+ T + + +Y L + P
Sbjct: 92 PKRGPQAFDAFCVALRETKQGHLEDLLLTTLSGLQHGLPPLSCDY--DLSLTFPMCESCP 149
Query: 784 PSYNLRLQNGRSKEQSLILGH--PDFQRDPVKTSIQESGAFLLQHVPEERYKMQSKPLGI 957
P LRL + E SL G P Q P ++ L Y++QS+P G+
Sbjct: 150 PQKQLRLSPD-TVEHSLDNGDGPPCLQVKPCTPEFYQTHYQLA-------YRLQSRPRGL 201
Query: 958 CLIIDCV------------GNDTD--VLRDTFSSLGYEVQYFLYLKVEQISKILRKVARM 1095
L++ V G D D L F LGY+V L +++ + L+ A++
Sbjct: 202 ALVLSNVHFTGEKDLEFRSGGDVDHSTLVTLFKLLGYKVHVLLDQTAQEMKEKLQNFAQL 261
Query: 1096 PQHQDYDSFVCVLVSRGGSQSVFGVDKTLSGFPLDHIRRMFMADVCPTLLGKPKLFFIQ 1272
P H+ DS + L+S G ++GVD L L + R+F CP L KPK+FFIQ
Sbjct: 262 PAHRVTDSCIVALLSHGVEGGIYGVDGKL--LQLQEVFRLFDNASCPNLQNKPKMFFIQ 318
>ref|NP_001003042.1| caspase-3 precursor [Canis lupus familiaris].
Length = 277
Score = 69.7 bits (169), Expect = 1e-11
Identities = 46/132 (34%), Positives = 67/132 (50%), Gaps = 14/132 (10%)
Frame = +1
Query: 919 EERYKMQSKPLGICLIIDCV------------GNDTDV--LRDTFSSLGYEVQYFLYLKV 1056
+ YKM +G+C+II+ G D D LR+TF++L YEV+ L
Sbjct: 34 DNSYKMDYPEMGLCIIINNKNFHKSTGMAPRSGTDVDAANLRETFTNLKYEVRNKNDLTC 93
Query: 1057 EQISKILRKVARMPQHQDYDSFVCVLVSRGGSQSVFGVDKTLSGFPLDHIRRMFMADVCP 1236
E+I +++ V++ H SFVCVL+S G +FG + + L + F D C
Sbjct: 94 EEILELMNSVSK-EDHSKRSSFVCVLLSHGDEGIIFGTNGPVD---LRKVTGFFRGDYCR 149
Query: 1237 TLLGKPKLFFIQ 1272
+L GKPKLF IQ
Sbjct: 150 SLTGKPKLFIIQ 161
>ref|XP_544026.2| PREDICTED: similar to caspase 7 isoform delta [Canis familiaris].
Length = 359
Score = 63.5 bits (153), Expect = 9e-10
Identities = 56/227 (24%), Positives = 98/227 (43%), Gaps = 15/227 (6%)
Frame = +1
Query: 913 VPEERYKMQSKPLGICLIIDC--------------VGNDTDVLRDTFSSLGYEVQYFLYL 1050
VP +Y M + +G C+II+ D + L F +LG++V +
Sbjct: 113 VPTYQYNMNFEKVGKCIIINNKNFDKTTGMGVRNGTDKDAEALFKCFRNLGFDVVIYNDC 172
Query: 1051 KVEQISKILRKVARMPQHQDYDSFVCVLVSRGGSQSVFGVDKTLSGFPLDHIRRMFMADV 1230
++ +L+K + H++ F C+L+S G ++G D + + + F D
Sbjct: 173 SCAKMQDLLKKASE-EDHRNSACFACILLSHGEENLIYGTDGMTA---IKDLTAHFRGDR 228
Query: 1231 CPTLLGKPKLFFIQIYVTSEGQLEDSSFLEVDGPSVKSMDSKARQPGTCTVHREADFFWS 1410
C TLL KPKLFFIQ +E L+D ++ D + D+ R + EADF ++
Sbjct: 229 CRTLLEKPKLFFIQACRGTE--LDDG--VQADSGPINDTDANPRY----KIPVEADFLFA 280
Query: 1411 LCKADVSLLERPXXXXXVYLQCLSQKLGKERK-VSLLELHVDLNSKV 1548
R ++Q L L + K + +L + +N++V
Sbjct: 281 YSTVPGYYSWRSPGSGSWFVQALCSTLNEHGKSLEILHILTRVNNRV 327
>ref|NP_001026803.1| caspase-9 [Canis lupus familiaris].
Length = 445
Score = 53.5 bits (127), Expect = 9e-07
Identities = 87/318 (27%), Positives = 133/318 (41%), Gaps = 44/318 (13%)
Frame = +1
Query: 553 SRSKMAKDKSFLDLVIELEKLNLVAPDHLDLLEKCLRNIHRIDLKTKIQKYKQSA-QGAE 729
SRS A+ LVI+LE A L L CL + + L + ++ +Q+ Q E
Sbjct: 50 SRSDQARQ-----LVIDLETRGSQA---LPLFISCLEDTGQDALASCLRMSRQAVKQNPE 101
Query: 730 TN--------YVNALQASLPNLSIKDPSYNLRLQNGRSKEQSLILGHPDFQRDPVKTSIQ 885
+ + + +L KDPS +L G K ++LG + Q V+ S+
Sbjct: 102 ATRPLDLMPVVLGPTRLTPEDLRGKDPS---KLTPG--KLAPVVLGPAELQPQVVRPSVP 156
Query: 886 E-----SGAF---LLQHVPEER----YKMQSKPLGICLIIDCVGN--------------D 987
SG F +Q + + Y + + P G CLII+ V D
Sbjct: 157 RPTDNGSGRFSDVCVQEISKGNGDLAYALNADPCGYCLIINNVNFCPESRLTARGGSNID 216
Query: 988 TDVLRDTFSSLGYEVQYFLYLKVEQISKILRKVARMPQHQDYDSFVCVLVSRGGSQS--- 1158
+ L+ F L + V+ L +Q+ + L ++AR H D V V++S G S
Sbjct: 217 CEKLQRRFCLLRFTVEVKWDLTAKQMVQALVELARR-DHSALDCCVVVVLSHGCEASHRQ 275
Query: 1159 ----VFGVDKTLSGFP--LDHIRRMFMADVCPTLLGKPKLFFIQIYVTSEGQLEDSSFLE 1320
V+G D G P ++ I +F CP+L GKPKLFFIQ G+ +D F
Sbjct: 276 FPGAVYGTD----GCPVSIEKIVNIFNGTGCPSLGGKPKLFFIQ---ACGGEQKDHGF-- 326
Query: 1321 VDGPSVKSMDSKARQPGT 1374
+V S + R PG+
Sbjct: 327 ----AVASASPEDRSPGS 340
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 74,929,965
Number of extensions: 1898988
Number of successful extensions: 5508
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 5483
Number of HSP's successfully gapped: 13
Length of query: 800
Length of database: 18,874,504
Length adjustment: 111
Effective length of query: 689
Effective length of database: 15,174,208
Effective search space: 10455029312
Effective search space used: 10455029312
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012666
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012666
(2402 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001012281.1| CASP8 and FADD-like apoptosis regulator [Bos... 778 0.0
Alignment gi|NP_001039435.1| caspase-8 [Bos taurus]. 125 1e-28
Alignment gi|NP_001030496.1| caspase-6 precursor [Bos taurus]. 74 6e-13
Alignment gi|NP_001071308.1| caspase-3 precursor [Bos taurus]. 73 1e-12
Alignment gi|NP_001137576.1| caspase-2 [Bos taurus]. 72 2e-12
Alignment gi|XP_002698555.1| PREDICTED: caspase 7-like [Bos taurus]. 66 2e-10
Alignment gi|XP_604643.3| PREDICTED: caspase 7 [Bos taurus]. 66 2e-10
Alignment gi|NP_001192433.1| caspase-9 [Bos taurus]. 53 1e-06
Alignment gi|XP_002694190.1| PREDICTED: caspase 9, apoptosis-related cyst... 53 1e-06
Alignment gi|NP_001007817.1| protein FADD [Bos taurus]. 52 2e-06
>ref|NP_001012281.1| CASP8 and FADD-like apoptosis regulator [Bos taurus].
Length = 484
Score = 778 bits (2010), Expect = 0.0
Identities = 397/484 (82%), Positives = 432/484 (89%), Gaps = 2/484 (0%)
Frame = +1
Query: 193 MSAEVIHQVEEALDEDEKEILLFLCRDIAADVVPLNVRDLLDILRERGKLSLVSLAELLY 372
MSAEVIHQVEEALDE+EK+ LLFLCRD+AADVVPLNVRDLLDILRERGKLS VSLAELLY
Sbjct: 1 MSAEVIHQVEEALDEEEKDTLLFLCRDVAADVVPLNVRDLLDILRERGKLSSVSLAELLY 60
Query: 373 RVRRFDLLKRILKMDRRTVEAQLLRHPHLISDYRVLMMEIGEGLDKSDVSSLIFLMRDHI 552
RVRRFDLLKR+L MD TVEA L +HPHLISDYRVLMMEIGE LDKSDVSSL+FLMRD+
Sbjct: 61 RVRRFDLLKRVLNMDTPTVEALLRKHPHLISDYRVLMMEIGEDLDKSDVSSLMFLMRDYT 120
Query: 553 SRSKMAKDKSFLDLVIELEKLNLVAPDHLDLLEKCLRNIHRIDLKTKIQKYKQSAQGAET 732
RSK+AKDKSFLDLV+ELEKLNLVAPD L+LLE+ LRNI+RIDLKTKIQKYKQSAQGAET
Sbjct: 121 GRSKIAKDKSFLDLVVELEKLNLVAPDQLNLLEESLRNINRIDLKTKIQKYKQSAQGAET 180
Query: 733 NYVNALQASLPNLSIKDPSYNLRLQNGRSKEQSLILGHPDFQRDPVKTSIQESGAFLLQH 912
NYVNA QASLPNLS+KDPSYNLRLQNGRSKEQ L++G PD QR+PVK IQESGAFL QH
Sbjct: 181 NYVNARQASLPNLSVKDPSYNLRLQNGRSKEQRLMMGPPDIQREPVKRPIQESGAFLPQH 240
Query: 913 VPEERYKMQSKPLGICLIIDCVGNDTDVLRDTFSSLGYEVQYFLYLKVEQISKILRKVAR 1092
+ EERYKMQSKPLGICLIIDC+GNDTD+LRDTF+SLGYEV++FLYL V+ I+ ILR+VA+
Sbjct: 241 IVEERYKMQSKPLGICLIIDCIGNDTDILRDTFTSLGYEVKHFLYLTVKDITNILRQVAQ 300
Query: 1093 MPQHQDYDSFVCVLVSRGGSQSVFGVDKTLSGFPLDHIRRMFMADVCPTLLGKPKLFFIQ 1272
MPQHQD DSF C+LVSRGGSQSVFGVD+T SG PLDHIRRMFMAD CP+L GKPKLFFIQ
Sbjct: 301 MPQHQDSDSFACILVSRGGSQSVFGVDQTHSGVPLDHIRRMFMADTCPSLSGKPKLFFIQ 360
Query: 1273 IYVTSEGQLEDSSFLEVDGPSVKSMDSKARQPGTC--TVHREADFFWSLCKADVSLLERP 1446
YV SEGQLEDSSFLEVDGPSVKS DSKARQPG +HREADFFWSLCKADVSLLE P
Sbjct: 361 SYVKSEGQLEDSSFLEVDGPSVKSADSKARQPGPYQDLIHREADFFWSLCKADVSLLEGP 420
Query: 1447 XXXXXVYLQCLSQKLGKERKVSLLELHVDLNSKVYDWNSRVSAKERYYVRLQHTLRKKVI 1626
+YL+CLSQKL KERK SLLELH +LN VYDWNS+VSAKERYYV LQHTLRK +
Sbjct: 421 SSSPSLYLKCLSQKLWKERKHSLLELHTELNRLVYDWNSKVSAKERYYVWLQHTLRKNLF 480
Query: 1627 LSCK 1638
LS K
Sbjct: 481 LSHK 484
>ref|NP_001039435.1| caspase-8 [Bos taurus].
Length = 485
Score = 125 bits (315), Expect = 1e-28
Identities = 124/507 (24%), Positives = 220/507 (43%), Gaps = 33/507 (6%)
Frame = +1
Query: 202 EVIHQVEEALDEDEKEILLFLCRDIAADVVPLNVRDLLDI---LRERGKL---SLVSLAE 363
+ ++ + E L D+ L FL RD ++D L + L+E+ L +L L E
Sbjct: 5 QCLYNIGEQLGSDDLAALKFLSRDHIPYRKQEPIKDALMLFQRLQEKRMLEENNLSFLKE 64
Query: 364 LLYRVRRFDLLKRILKMDRRTVEAQL-LRHPHLISDYRVLMMEIGEGLDKSDVSSLIFLM 540
LL+RV R DLL L ++ +L + IS YR+L+ +I E ++K ++ F +
Sbjct: 65 LLFRVNRLDLLLNYLYTSEEEMKRELQIPGRAQISAYRILLFQISEDVNKVELKDFKFFL 124
Query: 541 RDHISRSKMAKDKSFLDLVIELEKLNLVAPDHLDLLEKCLRNIHRIDLKTKIQKYKQSAQ 720
I++ K+ D + LD+ +E+EK ++ ++LD L++ +++ LK KI Y++ +
Sbjct: 125 SQEIAKCKLDDDMTLLDIFVEMEKRTILGEENLDTLKRICEQVNKSLLK-KIYDYEELRK 183
Query: 721 GAETNYVNALQASLPNLSIKDPSYNLRLQNGRSKEQSLILGHPDFQRDPVKTSIQESGAF 900
+S++ Y S + S L + + P + E +
Sbjct: 184 ER-------------RMSLERDPYAF------SNDMSQSLPEEGYSKMPAMSDSPEQDSE 224
Query: 901 LLQHVPEERYKMQSKPLGICLII-------------------DCVGN--DTDVLRDTFSS 1017
L + Y+M SKP G CLI D G D D L TF
Sbjct: 225 L--QTSDTVYRMTSKPRGYCLIFNNYDFSIARKQVPELHDLKDRTGTDFDADALDKTFRE 282
Query: 1018 LGYEVQYFLYLKVEQISKILRKVARMPQHQDYDSFVCVLVSRGGSQSVFGVDKTLSGFPL 1197
L +E+ ++ L + I ++L + H++ D F+C +++ G ++G D + +
Sbjct: 283 LHFEIVHYKDLTAKGICEVLESYQK-KDHKNKDCFICCILTHGNKGIIYGSDGQEAS--I 339
Query: 1198 DHIRRMFMADVCPTLLGKPKLFFIQIYVTSEGQLEDSSFLEVDGPSVKSMDSKARQPGTC 1377
+ F CP+L+GKPK+FFIQ + + +E D +++ P
Sbjct: 340 YELTSYFTGLKCPSLIGKPKIFFIQ--ACQGDKYQKGVAVETDSEQMEAYLEVDSSPQKR 397
Query: 1378 TVHREADFFWSLCKADVSLLERPXXXXXVYLQCLSQKLGKE--RKVSLLELHVDLNSKVY 1551
+ EADF + + R Y+Q L Q L + R +L + +N +V
Sbjct: 398 YIPDEADFLLGMATVKNYVSYRNIWNGAWYIQSLCQNLRERCPRGEDILTILTKVNFEV- 456
Query: 1552 DWNSRVSAKERYYVRLQH---TLRKKV 1623
S++ K+R ++ TLRKK+
Sbjct: 457 ---SKLDDKQRMAKQMPQPTFTLRKKL 480
>ref|NP_001030496.1| caspase-6 precursor [Bos taurus].
Length = 293
Score = 73.9 bits (180), Expect = 6e-13
Identities = 66/231 (28%), Positives = 97/231 (41%), Gaps = 20/231 (8%)
Frame = +1
Query: 916 PEERYKMQSKPLGICLIIDC--------------VGNDTDVLRDTFSSLGYEVQYFLYLK 1053
P E+YKM K GI LI + D D LR FS LG+EV+ F L+
Sbjct: 33 PTEKYKMDHKRRGIALIFNHERFFWHLTLPNRPGTSADRDNLRRRFSDLGFEVKCFDDLR 92
Query: 1054 VEQISKILRKVARMPQHQDYDSFVCVLVSRGGSQSVFGVDKTLSGFPLDHIRRMFMADVC 1233
E++ + + A H D D F+CV +S G ++ D + + + +F D C
Sbjct: 93 AEELLLKIHE-ASTASHVDADCFLCVFLSHGEGNHIYAYDAKIE---IQTLTGLFKGDKC 148
Query: 1234 PTLLGKPKLFFIQIYVTSEGQLEDSSFLEVD--GPSVKSMDSKARQPGTCTVH---READ 1398
+L+GKPK+F IQ G D + +D + D+ Q +V+ AD
Sbjct: 149 QSLVGKPKIFIIQ---ACRGSQHDVPVIPLDVVDHRTDTPDANLTQVDAASVYTLPAGAD 205
Query: 1399 FFWSLCKADVSLLERPXXXXXVYLQCLSQKLGK-ERKVSLLELHVDLNSKV 1548
F A+ R Y+Q L + LGK + EL +N KV
Sbjct: 206 FLMCYSVAEGYYSHRETVNGSWYIQDLCEMLGKFGSSLEFTELLTLVNRKV 256
>ref|NP_001071308.1| caspase-3 precursor [Bos taurus].
Length = 275
Score = 73.2 bits (178), Expect = 1e-12
Identities = 66/226 (29%), Positives = 100/226 (44%), Gaps = 16/226 (7%)
Frame = +1
Query: 919 EERYKMQSKPLGICLIID-----------C-VGNDTDV--LRDTFSSLGYEVQYFLYLKV 1056
EE YKM +G+C+II+ C G D D LR+TF +L YEV+ L
Sbjct: 34 EESYKMDYPEMGLCIIINNKNFHENTGMACRSGTDVDAANLRETFMNLKYEVRIKNDLTC 93
Query: 1057 EQISKILRKVARMPQHQDYDSFVCVLVSRGGSQSVFGVDKTLSGFPLDHIRRMFMADVCP 1236
+++ +++ V++ H SF+CVL+S G +FG + ++ L + F D C
Sbjct: 94 KEMLELMSNVSK-EDHSKRSSFICVLLSHGEEGIIFGTNGPVN---LKKLASFFRGDYCR 149
Query: 1237 TLLGKPKLFFIQIYVTSEGQLEDSSFLEVDGPSVKSMDSKARQPGTC-TVHREADFFWSL 1413
+L GKPKLF IQ G D DS A C + EADF ++
Sbjct: 150 SLTGKPKLFIIQ---ACRGTELDCGI---------ETDSGAEDDMACQKIPVEADFLYAY 197
Query: 1414 CKADVSLLERPXXXXXVYLQCLSQKLGKE-RKVSLLELHVDLNSKV 1548
A R ++Q L + L K ++ L+ + +N KV
Sbjct: 198 STAPGYFSWRNAKNGSWFIQALCEMLKKHAHRLELMHILTRVNRKV 243
>ref|NP_001137576.1| caspase-2 [Bos taurus].
Length = 452
Score = 72.0 bits (175), Expect = 2e-12
Identities = 81/296 (27%), Positives = 125/296 (42%), Gaps = 17/296 (5%)
Frame = +1
Query: 436 QLLRHPHLISDYRVLMMEIGEGLDKSDVSSLIFLMRDHISRSKMAKDKSFLDLVIELEKL 615
+ L+ ++ +L+ E+ E L + D+ +L MR+HI AK SF V L L
Sbjct: 38 EALKKNRVVLAKELLLSELLEHLLEKDIITLE--MREHIQ----AKTGSFGQNVELLNLL 91
Query: 616 NLVAPDHLDLLEKCLRNIHRIDLKTKIQKYKQSAQGAETNYVNALQASLPNLSIKDPSYN 795
P D LR + L+ + + Q SLP + + +
Sbjct: 92 PKRGPQAFDAFCVALRETKQSHLEELLLRTLSGLQPVVPPLSCDYDLSLPFPVCESCTRH 151
Query: 796 LRLQ-NGRSKEQSLILGH--PDFQRDPVKTSIQESGAFLLQHVPEERYKMQSKPLGICLI 966
RL + + E SL G P Q P ++ L Y++QS+P G+ L+
Sbjct: 152 KRLHLSPDAVEHSLDHGDGPPCLQVKPCTPEFYQTHHHLA-------YRLQSRPRGLALV 204
Query: 967 IDCV------------GNDTD--VLRDTFSSLGYEVQYFLYLKVEQISKILRKVARMPQH 1104
+ V G D D L F LGY+V L +++ + L+ A++P H
Sbjct: 205 LSNVHFTGEKDLEFRSGGDVDHSTLVTLFKLLGYKVHVLLDQTAQEMQEKLQNFAQLPVH 264
Query: 1105 QDYDSFVCVLVSRGGSQSVFGVDKTLSGFPLDHIRRMFMADVCPTLLGKPKLFFIQ 1272
+ DS + L+S G V+GVD L L + R+F CP+L KPK+FFIQ
Sbjct: 265 RVTDSCIVALLSHGVEGGVYGVDGKL--LQLQEVFRLFDNANCPSLQNKPKMFFIQ 318
>ref|XP_002698555.1| PREDICTED: caspase 7-like [Bos taurus].
Length = 301
Score = 65.9 bits (159), Expect = 2e-10
Identities = 60/245 (24%), Positives = 104/245 (42%), Gaps = 15/245 (6%)
Frame = +1
Query: 913 VPEERYKMQSKPLGICLIIDC--------------VGNDTDVLRDTFSSLGYEVQYFLYL 1050
VP +Y M + +G C+II+ D + L F SLG++V +
Sbjct: 55 VPTYQYNMNFEKVGKCIIINNKNFDRITGMGVRNGTDKDAEALFKCFRSLGFDVSVYNDC 114
Query: 1051 KVEQISKILRKVARMPQHQDYDSFVCVLVSRGGSQSVFGVDKTLSGFPLDHIRRMFMADV 1230
++ +L+K + H++ F C+L+S G ++G D + + + F D
Sbjct: 115 SCAKMQDLLKKASE-EDHRNSACFACILLSHGEENLIYGTDGKTA---IKDLTAHFRGDR 170
Query: 1231 CPTLLGKPKLFFIQIYVTSEGQLEDSSFLEVDGPSVKSMDSKARQPGTCTVHREADFFWS 1410
C TLL KPKLFFIQ +E L+D ++ D + D+ R + EADF ++
Sbjct: 171 CKTLLEKPKLFFIQACRGTE--LDDG--IQADSGPINDTDANPRY----KIPVEADFLFA 222
Query: 1411 LCKADVSLLERPXXXXXVYLQCLSQKLGKERK-VSLLELHVDLNSKVYDWNSRVSAKERY 1587
R ++Q L L + K + +L++ +N +V S R+
Sbjct: 223 YSTVPGYYSWRNPGSGSWFVQALCSILNEHGKSLEILQILTRVNDRVARHFESQSDDPRF 282
Query: 1588 YVRLQ 1602
+ + Q
Sbjct: 283 HEKKQ 287
>ref|XP_604643.3| PREDICTED: caspase 7 [Bos taurus].
Length = 301
Score = 65.9 bits (159), Expect = 2e-10
Identities = 60/245 (24%), Positives = 104/245 (42%), Gaps = 15/245 (6%)
Frame = +1
Query: 913 VPEERYKMQSKPLGICLIIDC--------------VGNDTDVLRDTFSSLGYEVQYFLYL 1050
VP +Y M + +G C+II+ D + L F SLG++V +
Sbjct: 55 VPTYQYNMNFEKVGKCIIINNKNFDRITGMGVRNGTDKDAEALFKCFRSLGFDVSVYNDC 114
Query: 1051 KVEQISKILRKVARMPQHQDYDSFVCVLVSRGGSQSVFGVDKTLSGFPLDHIRRMFMADV 1230
++ +L+K + H++ F C+L+S G ++G D + + + F D
Sbjct: 115 SCAKMQDLLKKASE-EDHRNSACFACILLSHGEENLIYGTDGKTA---IKDLTAHFRGDR 170
Query: 1231 CPTLLGKPKLFFIQIYVTSEGQLEDSSFLEVDGPSVKSMDSKARQPGTCTVHREADFFWS 1410
C TLL KPKLFFIQ +E L+D ++ D + D+ R + EADF ++
Sbjct: 171 CKTLLEKPKLFFIQACRGTE--LDDG--IQADSGPINDTDANPRY----KIPVEADFLFA 222
Query: 1411 LCKADVSLLERPXXXXXVYLQCLSQKLGKERK-VSLLELHVDLNSKVYDWNSRVSAKERY 1587
R ++Q L L + K + +L++ +N +V S R+
Sbjct: 223 YSTVPGYYSWRNPGSGSWFVQALCSILNEHGKSLEILQILTRVNDRVARHFESQSDDPRF 282
Query: 1588 YVRLQ 1602
+ + Q
Sbjct: 283 HEKKQ 287
>ref|NP_001192433.1| caspase-9 [Bos taurus].
Length = 423
Score = 52.8 bits (125), Expect = 1e-06
Identities = 57/208 (27%), Positives = 84/208 (40%), Gaps = 32/208 (15%)
Frame = +1
Query: 847 PDFQRDPVKTSIQESGAFLLQHVPEER--------YKMQSKPLGICLIIDCVGN------ 984
P+ R V ++ P++R Y + + P G CLII+ V
Sbjct: 126 PEVLRPEVPRAVDAGSGGFTDVCPQDRAKGNADLAYVLNADPCGHCLIINNVNFCRESGL 185
Query: 985 --------DTDVLRDTFSSLGYEVQYFLYLKVEQISKILRKVARMPQHQDYDSFVCVLVS 1140
D + +R F L + V+ L +Q+ + L ++AR H D V V++S
Sbjct: 186 RARTGSNIDCERMRQRFHLLQFVVEVKCDLTAKQMVQALMQLARQ-DHSALDCCVVVILS 244
Query: 1141 RGGSQS-------VFGVDKTLSGFPL--DHIRRMFMADVCPTLLGKPKLFFIQIYVTSEG 1293
G S V+G D G P+ + I F CP+L GKPKLFFIQ G
Sbjct: 245 HGCQASHLQFPGAVYGTD----GCPVSVERIVNTFNGTGCPSLRGKPKLFFIQ---ACGG 297
Query: 1294 QLEDSSF-LEVDGPSVKSMDSKARQPGT 1374
+ +D F +E P K+ S T
Sbjct: 298 EQKDHGFEVESTSPEDKTPSSDPEADAT 325
>ref|XP_002694190.1| PREDICTED: caspase 9, apoptosis-related cysteine peptidase [Bos
taurus].
Length = 423
Score = 52.8 bits (125), Expect = 1e-06
Identities = 57/208 (27%), Positives = 84/208 (40%), Gaps = 32/208 (15%)
Frame = +1
Query: 847 PDFQRDPVKTSIQESGAFLLQHVPEER--------YKMQSKPLGICLIIDCVGN------ 984
P+ R V ++ P++R Y + + P G CLII+ V
Sbjct: 126 PEVLRPEVPRAVDAGSGGFTDVCPQDRAKGNADLAYVLNADPCGHCLIINNVNFCRESGL 185
Query: 985 --------DTDVLRDTFSSLGYEVQYFLYLKVEQISKILRKVARMPQHQDYDSFVCVLVS 1140
D + +R F L + V+ L +Q+ + L ++AR H D V V++S
Sbjct: 186 RARTGSNIDCERMRQRFHLLQFVVEVKCDLTAKQMVQALMQLARQ-DHSALDCCVVVILS 244
Query: 1141 RGGSQS-------VFGVDKTLSGFPL--DHIRRMFMADVCPTLLGKPKLFFIQIYVTSEG 1293
G S V+G D G P+ + I F CP+L GKPKLFFIQ G
Sbjct: 245 HGCQASHLQFPGAVYGTD----GCPVSVERIVNTFNGTGCPSLRGKPKLFFIQ---ACGG 297
Query: 1294 QLEDSSF-LEVDGPSVKSMDSKARQPGT 1374
+ +D F +E P K+ S T
Sbjct: 298 EQKDHGFEVESTSPEDKTPSSDPEADAT 325
>ref|NP_001007817.1| protein FADD [Bos taurus].
Length = 209
Score = 52.4 bits (124), Expect = 2e-06
Identities = 30/98 (30%), Positives = 54/98 (55%)
Frame = +1
Query: 469 YRVLMMEIGEGLDKSDVSSLIFLMRDHISRSKMAKDKSFLDLVIELEKLNLVAPDHLDLL 648
+ VL+ + GL SD++ L FL ++HIS+ K+ +S LDL L + N + +H LL
Sbjct: 4 FLVLLHSVSAGLSSSDLTQLKFLCQNHISKRKLELAQSGLDLFTVLLQQNELNAEHTALL 63
Query: 649 EKCLRNIHRIDLKTKIQKYKQSAQGAETNYVNALQASL 762
+ L ++ R DL ++ +++ A G L+A++
Sbjct: 64 RELLCSLRRKDLLLRLDDFERGAAGGAAPEDRDLRAAM 101
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 74,288,666
Number of extensions: 2324218
Number of successful extensions: 5226
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 5207
Number of HSP's successfully gapped: 10
Length of query: 800
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 690
Effective length of database: 14,041,694
Effective search space: 9688768860
Effective search space used: 9688768860
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012666
(2402 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001001628.1| cellular FLICE-like inhibitory protein [Sus ... 947 0.0
Alignment gi|XP_003359655.1| PREDICTED: CASP8 and FADD-like apoptosis reg... 334 1e-91
Alignment gi|NP_001026949.2| caspase-8 [Sus scrofa]. 130 4e-30
Alignment gi|NP_001155112.1| caspase-10 [Sus scrofa]. 108 1e-23
Alignment gi|XP_003359654.1| PREDICTED: caspase-8-like [Sus scrofa]. 86 1e-16
Alignment gi|NP_999296.1| caspase-3 precursor [Sus scrofa]. 71 3e-12
Alignment gi|XP_003134619.1| PREDICTED: caspase-2-like isoform 1 [Sus scr... 70 5e-12
Alignment gi|XP_003129304.2| PREDICTED: caspase-6-like [Sus scrofa]. 64 4e-10
>ref|NP_001001628.1| cellular FLICE-like inhibitory protein [Sus scrofa].
Length = 487
Score = 947 bits (2449), Expect = 0.0
Identities = 482/487 (98%), Positives = 482/487 (98%)
Frame = +1
Query: 178 MTLYRMSAEVIHQVEEALDEDEKEILLFLCRDIAADVVPLNVRDLLDILRERGKLSLVSL 357
MTLYRMSAEVIHQVEEALDEDEKEILLFLCRDIAADVVPLNVRDLLDILRERGKLSLVSL
Sbjct: 1 MTLYRMSAEVIHQVEEALDEDEKEILLFLCRDIAADVVPLNVRDLLDILRERGKLSLVSL 60
Query: 358 AELLYRVRRFDLLKRILKMDRRTVEAQLLRHPHLISDYRVLMMEIGEGLDKSDVSSLIFL 537
AELLYRVRRFDLLKRILKMDRRTVEAQLLRHPHLISDYRVLMMEIGEGLDKSDVSSLIFL
Sbjct: 61 AELLYRVRRFDLLKRILKMDRRTVEAQLLRHPHLISDYRVLMMEIGEGLDKSDVSSLIFL 120
Query: 538 MRDHISRSKMAKDKSFLDLVIELEKLNLVAPDHLDLLEKCLRNIHRIDLKTKIQKYKQSA 717
MRDHISRSKMAKDKSFLDLVIELEKLNLVAPDHLDLLEKCLRNIHRIDLKTKIQKYKQSA
Sbjct: 121 MRDHISRSKMAKDKSFLDLVIELEKLNLVAPDHLDLLEKCLRNIHRIDLKTKIQKYKQSA 180
Query: 718 QGAETNYVNALQASLPNLSIKDPSYNLRLQNGRSKEQSLILGHPDFQRDPVKTSIQESGA 897
QGAETNYVNALQASLPNLSIKDPSYNLRLQNGRSKEQSLILGHPDFQRDPVKTSIQESGA
Sbjct: 181 QGAETNYVNALQASLPNLSIKDPSYNLRLQNGRSKEQSLILGHPDFQRDPVKTSIQESGA 240
Query: 898 FLLQHVPEERYKMQSKPLGICLIIDCVGNDTDVLRDTFSSLGYEVQYFLYLKVEQISKIL 1077
FLLQHVPEERYKMQSKPLGICLIIDCVGNDTDVLRDTFSSLGYEVQYFLYLKVEQISKIL
Sbjct: 241 FLLQHVPEERYKMQSKPLGICLIIDCVGNDTDVLRDTFSSLGYEVQYFLYLKVEQISKIL 300
Query: 1078 RKVARMPQHQDYDSFVCVLVSRGGSQSVFGVDKTLSGFPLDHIRRMFMADVCPTLLGKPK 1257
RKVARMPQHQDYDSFVCVLVSRGGSQSVFGVDKTLSGFPLDHIRRMFMADVCPTLLGKPK
Sbjct: 301 RKVARMPQHQDYDSFVCVLVSRGGSQSVFGVDKTLSGFPLDHIRRMFMADVCPTLLGKPK 360
Query: 1258 LFFIQIYVTSEGQLEDSSFLEVDGPSVKSMDSKARQPGTCTVHREADFFWSLCKADVSLL 1437
LFFIQIYVTSEGQLEDSSFLEVDGPSVKSMDSKARQPGTCTVHREADFFWSLCKADVSLL
Sbjct: 361 LFFIQIYVTSEGQLEDSSFLEVDGPSVKSMDSKARQPGTCTVHREADFFWSLCKADVSLL 420
Query: 1438 ERPXXXXXVYLQCLSQKLGKERKVSLLELHVDLNSKVYDWNSRVSAKERYYVRLQHTLRK 1617
ERP VYLQCLSQKLGKERKVSLLELHVDLNSKVYDWNSRVSAKERYYVRLQHTLRK
Sbjct: 421 ERPSSSSSVYLQCLSQKLGKERKVSLLELHVDLNSKVYDWNSRVSAKERYYVRLQHTLRK 480
Query: 1618 KVILSCK 1638
KVILSCK
Sbjct: 481 KVILSCK 487
>ref|XP_003359655.1| PREDICTED: CASP8 and FADD-like apoptosis regulator-like [Sus scrofa].
Length = 180
Score = 334 bits (857), Expect = 1e-91
Identities = 166/171 (97%), Positives = 166/171 (97%)
Frame = +1
Query: 991 DVLRDTFSSLGYEVQYFLYLKVEQISKILRKVARMPQHQDYDSFVCVLVSRGGSQSVFGV 1170
DVLRDTFSSLGYEVQYFLYLKVEQISKILRKVARMPQHQDYDSFVCVLVSRGGSQSVFGV
Sbjct: 10 DVLRDTFSSLGYEVQYFLYLKVEQISKILRKVARMPQHQDYDSFVCVLVSRGGSQSVFGV 69
Query: 1171 DKTLSGFPLDHIRRMFMADVCPTLLGKPKLFFIQIYVTSEGQLEDSSFLEVDGPSVKSMD 1350
DKTLSGFPLDHIRRMFMADVCPTLLGKPKLFFIQIYVTSEGQLEDSSFLEVDGPSVKSMD
Sbjct: 70 DKTLSGFPLDHIRRMFMADVCPTLLGKPKLFFIQIYVTSEGQLEDSSFLEVDGPSVKSMD 129
Query: 1351 SKARQPGTCTVHREADFFWSLCKADVSLLERPXXXXXVYLQCLSQKLGKER 1503
SKARQPGTCTVHREADFFWSLCKADVSLLERP VYLQCLSQKLGKER
Sbjct: 130 SKARQPGTCTVHREADFFWSLCKADVSLLERPSSSSSVYLQCLSQKLGKER 180
>ref|NP_001026949.2| caspase-8 [Sus scrofa].
Length = 486
Score = 130 bits (326), Expect = 4e-30
Identities = 129/466 (27%), Positives = 210/466 (45%), Gaps = 34/466 (7%)
Frame = +1
Query: 208 IHQVEEALDEDEKEILLFLCRDIAADVVPLNVRDLLDI---LRERGKL---SLVSLAELL 369
++ + E LD D+ L FL D ++D L + L+E+ L +L L ELL
Sbjct: 7 LYNIGEHLDSDDLASLKFLSLDYIPHRKQEPIKDALMLFQRLQEKRMLEESNLSFLKELL 66
Query: 370 YRVRRFDLLKRILKMDRRTVEAQLLRHPHL--ISDYRVLMMEIGEGLDKSDVSSLIFLMR 543
+R+ R DLL L+ + +E++L R P IS YRV++ +I E + +S++ F +
Sbjct: 67 FRMNRLDLLINYLETNEEEMESEL-RIPGRAQISAYRVMLFQISENVTRSELKDFKFFLS 125
Query: 544 DHISRSKMAKDKSFLDLVIELEKLNLVAPDHLDLLEKCLRNIHRIDLKTKIQKYKQSAQG 723
I++ K+ D + LD+ IE+EK ++ +L+ L++ I++ LK KI Y++ +
Sbjct: 126 QEIAKCKLDDDMTLLDMFIEMEKRAILGERNLETLKRICEQINKALLK-KICDYEELNKD 184
Query: 724 AETNYVNALQASLPNLSIKDPSYNLRLQNGRSKEQSL--ILGHPDFQRDPVKTSIQESGA 897
+ +A ++S L +Q G E ++ LG D +
Sbjct: 185 RRMSLESASDEFSNDMS------QLVIQEGSLGELAMSDCLGEQDSDSE----------- 227
Query: 898 FLLQHVPEERYKMQSKPLGICLII-------------------DCVGNDTD--VLRDTFS 1014
E Y+M+SKP G CLI D G D D L TFS
Sbjct: 228 -----ASEAVYRMKSKPRGYCLIFNNYDFSVARKNIARLHNIKDRNGTDLDAAALSKTFS 282
Query: 1015 SLGYEVQYFLYLKVEQISKILRKVARMPQHQDYDSFVCVLVSRGGSQSVFGVDKTLSGFP 1194
L +EV+ + + ++I +L + R H D D FVC ++S G ++G D + P
Sbjct: 283 DLHFEVRPYKDVTAKEICDVL-EYYRNLDHNDKDCFVCCILSHGDKGIIYGSDGREA--P 339
Query: 1195 LDHIRRMFMADVCPTLLGKPKLFFIQIYVTSEGQLEDSSFLEVDGPSVKS---MDSKARQ 1365
+ + F CP+LLGKPK+FFIQ + + +E D ++ MDS ++
Sbjct: 340 IYDLTSYFTGSKCPSLLGKPKIFFIQ--ACQGDKYQKGIAIETDSEQTEAYLEMDSSLQK 397
Query: 1366 PGTCTVHREADFFWSLCKADVSLLERPXXXXXVYLQCLSQKLGKER 1503
+ EADF + + + R Y+Q L Q L KER
Sbjct: 398 R---YIPDEADFLLGMATVNNCVSYRSTMEGTWYIQSLCQSL-KER 439
>ref|NP_001155112.1| caspase-10 [Sus scrofa].
Length = 520
Score = 108 bits (270), Expect = 1e-23
Identities = 130/503 (25%), Positives = 208/503 (41%), Gaps = 30/503 (5%)
Frame = +1
Query: 217 VEEALDEDEKEILLFLCRDIAADVVPLNVRDLLDILRERGKLSLVS------LAELLYRV 378
++ L + + E L FLCRD + +DI + L+S LAELLY +
Sbjct: 25 IDSNLGDQDVERLKFLCRDHISSRSLERSNSAVDIFDQLMTEELLSEEDTFFLAELLYTI 84
Query: 379 RRFDLLKRILKMDRRTVEAQLLRHPHLISDYRVLMMEIGEGLDKSDVSSLIFLMRDHISR 558
++ LL+ + + A LL +S +R L+ E+ E + ++ + FL+R+ I R
Sbjct: 85 KQNSLLRHLHYTKEQV--ACLLPTRRKVSLFRNLLYELSENISSENLKGMTFLLRESIPR 142
Query: 559 SKMAKDKSFLDLVIELEKLNLVAPDHLDLLEKCLRNIHRIDLKTKIQKYKQSAQGAETNY 738
+M L L+ LEK + + D+L LLE + I +L KI+KYK+
Sbjct: 143 VQMTS----LSLLSYLEKQDQIDEDNLTLLEDVCKKIAP-NLMRKIEKYKREKASQVVTP 197
Query: 739 VNALQA-SLPN-----LSIKDPSYNL-RLQNGRSKEQSLILGHPDFQRDPVKTSIQESGA 897
+A + SLP S D + L LQ G +++ G PV + +
Sbjct: 198 PSAEETESLPQGKEELFSPSDIKHLLGSLQEGSQQDEHA--GSNGETATPVSVELLGASV 255
Query: 898 FLLQHVPEER----YKMQSKPLGICLIIDC-----------VGNDTDVLRDTFSSLGYEV 1032
L + Y+M G C++++ D + LR F LG+ V
Sbjct: 256 ETLTSKSSTKETAVYRMDRNHRGFCVVVNNHRFTSMSERPGTHKDAECLRRVFEWLGFSV 315
Query: 1033 QYFLYLKVEQISKILRKVARMPQHQDYDSFVCVLVSRGGSQSVFGVDKTLSGFPLDHIRR 1212
++ + + ++L+K P H D D FV +++ G +++ D L P+ I
Sbjct: 316 HVYVDVTKVHLMQVLQKYQSHPGHADGDCFVFCVLTHGEFGAIYSSDGDL--IPIREILS 373
Query: 1213 MFMADVCPTLLGKPKLFFIQIYVTSEGQLEDSSFLEVDGPSVKSMDSKARQPGTCTVHRE 1392
F A CP L KPKLFFIQ E Q S + P +K+ K P E
Sbjct: 374 HFTAQQCPGLAHKPKLFFIQACQGEEIQPSVSIEADAVNPELKAPLLKDSIP------VE 427
Query: 1393 ADFFWSLCKADVSLLERPXXXXXVYLQCLSQKLGK--ERKVSLLELHVDLNSKVYDWNSR 1566
ADF L + R Y+Q L L R+ +L + +N+ V +
Sbjct: 428 ADFLLGLATVPGYVSFRHVKEGSWYIQSLYNHLKDLVPRREDILSILTAVNNDVSRQVDK 487
Query: 1567 VSAKERYYVRLQHTLRKKVILSC 1635
+K++ + TLRKK C
Sbjct: 488 RGSKKQ-MPQPAFTLRKKSYSLC 509
>ref|XP_003359654.1| PREDICTED: caspase-8-like [Sus scrofa].
Length = 361
Score = 85.5 bits (210), Expect = 1e-16
Identities = 84/344 (24%), Positives = 142/344 (41%), Gaps = 3/344 (0%)
Frame = +1
Query: 481 MMEIGEGLDKSDVSSLIFLMRDHISRSKMAKDKSFLDLVIELEKLNLVAPDHLDLLEKCL 660
+ IGE LD D++SL FL D+I K K L L L++ ++ +L L++ L
Sbjct: 7 LYNIGEHLDSDDLASLKFLSLDYIPHRKQEPIKDALMLFQRLQEKRMLEESNLSFLKELL 66
Query: 661 RNIHRIDLKTKIQKYKQSAQGAETNYVNALQASLPNLSIKDPSYNLRLQNGRSKEQSLIL 840
++R+DL + + +E Q S + + S N+
Sbjct: 67 FRMNRLDLLINYLETNEEEMESELRIPGRAQISAYRVMLFQISENV-------------- 112
Query: 841 GHPDFQRDPVKTSIQESGAFLLQHVPEERYKMQSKPLGICLIIDCVGNDTDVLRDTFSSL 1020
++ +++ FL Q + + + G+ L + L TFS L
Sbjct: 113 ---------TRSELKDFKFFLSQEIAKCKLDDDMVRPGVSLRF----SPEAALSKTFSDL 159
Query: 1021 GYEVQYFLYLKVEQISKILRKVARMPQHQDYDSFVCVLVSRGGSQSVFGVDKTLSGFPLD 1200
+EV+ + + + I +L + H D D FVC ++S G ++G D + P+
Sbjct: 160 HFEVRPYKDVTAKGICDVLEYYRNL-DHNDKDCFVCCILSHGDKGIIYGSDGREA--PIY 216
Query: 1201 HIRRMFMADVCPTLLGKPKLFFIQIYVTSEGQLEDSSFLEVDGPSVKS---MDSKARQPG 1371
+ F CP+LLGKPK+FFIQ + + +E D ++ MDS ++
Sbjct: 217 DLTSYFTGSKCPSLLGKPKIFFIQ--ACQGDKYQKGIAIETDSEQTEAYLEMDSSLQKR- 273
Query: 1372 TCTVHREADFFWSLCKADVSLLERPXXXXXVYLQCLSQKLGKER 1503
+ EADF + + + R Y+Q L Q L KER
Sbjct: 274 --YIPDEADFLLGMATVNNCVSYRSTMEGTWYIQSLCQSL-KER 314
Score = 52.0 bits (123), Expect = 1e-06
Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 7/130 (5%)
Frame = +1
Query: 208 IHQVEEALDEDEKEILLFLCRDIAADVVPLNVRDLLDI---LRERGKL---SLVSLAELL 369
++ + E LD D+ L FL D ++D L + L+E+ L +L L ELL
Sbjct: 7 LYNIGEHLDSDDLASLKFLSLDYIPHRKQEPIKDALMLFQRLQEKRMLEESNLSFLKELL 66
Query: 370 YRVRRFDLLKRILKMDRRTVEAQL-LRHPHLISDYRVLMMEIGEGLDKSDVSSLIFLMRD 546
+R+ R DLL L+ + +E++L + IS YRV++ +I E + +S++ F +
Sbjct: 67 FRMNRLDLLINYLETNEEEMESELRIPGRAQISAYRVMLFQISENVTRSELKDFKFFLSQ 126
Query: 547 HISRSKMAKD 576
I++ K+ D
Sbjct: 127 EIAKCKLDDD 136
>ref|NP_999296.1| caspase-3 precursor [Sus scrofa].
Length = 277
Score = 70.9 bits (172), Expect = 3e-12
Identities = 47/129 (36%), Positives = 67/129 (51%), Gaps = 14/129 (10%)
Frame = +1
Query: 928 YKMQSKPLGICLIID-----------C-VGNDTDV--LRDTFSSLGYEVQYFLYLKVEQI 1065
YKM +G+C+II+ C G D D LR+TF++L YEV+ L E+I
Sbjct: 37 YKMDYPEMGLCIIINNKNFDKNTGMACRSGTDVDAANLRETFTNLKYEVRNKNDLTREEI 96
Query: 1066 SKILRKVARMPQHQDYDSFVCVLVSRGGSQSVFGVDKTLSGFPLDHIRRMFMADVCPTLL 1245
+++ V++ H SF+CVL+S G +FG + + L + F D C TL
Sbjct: 97 LELMHSVSK-EDHSKRSSFICVLLSHGEEGKIFGTNGPVD---LKKLTSFFRGDCCRTLT 152
Query: 1246 GKPKLFFIQ 1272
GKPKLF IQ
Sbjct: 153 GKPKLFIIQ 161
>ref|XP_003134619.1| PREDICTED: caspase-2-like isoform 1 [Sus scrofa].
Length = 452
Score = 70.1 bits (170), Expect = 5e-12
Identities = 80/297 (26%), Positives = 127/297 (42%), Gaps = 18/297 (6%)
Frame = +1
Query: 436 QLLRHPHLISDYRVLMMEIGEGLDKSDVSSLIFLMRDHISRSKMAKDKSFLDLVIELEKL 615
+ L+ ++ ++L+ E+ E L + D+ +L MR+HI AK SF V L L
Sbjct: 38 EALKKNRVVLAKQLLLSELLEHLLEKDIITLE--MREHIQ----AKVGSFSQNVELLNLL 91
Query: 616 NLVAPDHLDLLEKCLRNIHRIDLKTKIQKYKQSAQGAETNYVNALQASLPNLSIKD--PS 789
P D LR + L+ + + Q A SLP +++ P
Sbjct: 92 PKRGPQAFDAFCVALRETKQDHLEELLLETLSGLQHAHPPLSCDYNLSLP-FPVRESCPP 150
Query: 790 YNLRLQNGRSKEQSLILGH--PDFQRDPVKTSIQESGAFLLQHVPEERYKMQSKPLGICL 963
+ + E+SL G P Q P ++ L Y++QS+P G+ L
Sbjct: 151 HKQPRLSADVGERSLDDGDGPPCLQVKPCTPEFYQTHYQLA-------YRLQSRPRGLAL 203
Query: 964 IIDCV------------GNDTD--VLRDTFSSLGYEVQYFLYLKVEQISKILRKVARMPQ 1101
++ V G D D L F LGY+V L +++ + L+ A++P
Sbjct: 204 VLSNVHFTGEKDLEFRSGGDVDHSTLVALFKLLGYQVHVLLDQTAQEMQEKLQDFAQLPT 263
Query: 1102 HQDYDSFVCVLVSRGGSQSVFGVDKTLSGFPLDHIRRMFMADVCPTLLGKPKLFFIQ 1272
H+ DS + L+S G V+GVD L L + ++F CP+L KPK+FFIQ
Sbjct: 264 HRVTDSCIVALLSHGVEGGVYGVDGKL--LQLQEVFQLFDNANCPSLQNKPKMFFIQ 318
>ref|XP_003129304.2| PREDICTED: caspase-6-like [Sus scrofa].
Length = 248
Score = 63.9 bits (154), Expect = 4e-10
Identities = 53/186 (28%), Positives = 81/186 (43%), Gaps = 6/186 (3%)
Frame = +1
Query: 1009 FSSLGYEVQYFLYLKVEQISKILRKVARMPQHQDYDSFVCVLVSRGGSQSVFGVDKTLSG 1188
FS LG+EV+ F L+ E++ + + A H D D F+CV +S G ++ D +
Sbjct: 34 FSDLGFEVKCFNDLRAEELLLKIHE-ASTASHVDADCFLCVFLSHGEGNHIYAYDAKIE- 91
Query: 1189 FPLDHIRRMFMADVCPTLLGKPKLFFIQIYVTSEGQLEDSSFLEVD--GPSVKSMDSKAR 1362
+ + +F D C +L+GKPK+F IQ G D L +D +D+
Sbjct: 92 --IQTLTGLFKGDKCQSLVGKPKIFIIQ---ACRGNQHDVPVLPLDVVDHQTDKLDANLT 146
Query: 1363 QPGTCTVH---READFFWSLCKADVSLLERPXXXXXVYLQCLSQKLGK-ERKVSLLELHV 1530
Q +V+ ADF A+ R Y+Q L + LGK + EL
Sbjct: 147 QVDAASVYTLPAGADFLMCYSVAEGYYSHRETVNGSWYIQDLCEMLGKFGSSLEFTELLT 206
Query: 1531 DLNSKV 1548
+N KV
Sbjct: 207 LVNRKV 212
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 52,147,502
Number of extensions: 2238495
Number of successful extensions: 3495
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3474
Number of HSP's successfully gapped: 9
Length of query: 800
Length of database: 11,343,932
Length adjustment: 107
Effective length of query: 693
Effective length of database: 8,679,953
Effective search space: 6015207429
Effective search space used: 6015207429
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012666
(2402 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_997536.1| CASP8 and FADD-like apoptosis regulator isoform... 619 e-177
Alignment gi|NP_033935.2| CASP8 and FADD-like apoptosis regulator isoform... 283 3e-76
Alignment gi|NP_001073595.1| caspase-8 precursor [Mus musculus]. 122 1e-27
Alignment gi|NP_033942.1| caspase-8 precursor [Mus musculus]. 122 1e-27
Alignment gi|NP_033941.3| caspase-6 precursor [Mus musculus]. 69 2e-11
Alignment gi|NP_031637.1| caspase-7 precursor [Mus musculus]. 67 5e-11
Alignment gi|NP_031636.1| caspase-2 [Mus musculus]. 66 1e-10
Alignment gi|NP_033940.1| caspase-3 [Mus musculus]. 65 2e-10
>ref|NP_997536.1| CASP8 and FADD-like apoptosis regulator isoform 1 [Mus musculus].
Length = 481
Score = 619 bits (1597), Expect = e-177
Identities = 323/480 (67%), Positives = 381/480 (79%)
Frame = +1
Query: 193 MSAEVIHQVEEALDEDEKEILLFLCRDIAADVVPLNVRDLLDILRERGKLSLVSLAELLY 372
+SAEVIHQVEE LDEDEKE++LFLCRD+ ++ NVRDLLD L ERG+LS +LAELLY
Sbjct: 6 VSAEVIHQVEECLDEDEKEMMLFLCRDVTENLAAPNVRDLLDSLSERGQLSFATLAELLY 65
Query: 373 RVRRFDLLKRILKMDRRTVEAQLLRHPHLISDYRVLMMEIGEGLDKSDVSSLIFLMRDHI 552
RVRRFDLLKRILK D+ TVE L R+PHL+SDYRVL+MEIGE LD++DVSSL+FL RD+
Sbjct: 66 RVRRFDLLKRILKTDKATVEDHLRRNPHLVSDYRVLLMEIGESLDQNDVSSLVFLTRDYT 125
Query: 553 SRSKMAKDKSFLDLVIELEKLNLVAPDHLDLLEKCLRNIHRIDLKTKIQKYKQSAQGAET 732
R K+AKDKSFLDLVIELEKLNL+A D L+LLEKCL+NIHRIDL TKIQKY QS+QGA +
Sbjct: 126 GRGKIAKDKSFLDLVIELEKLNLIASDQLNLLEKCLKNIHRIDLNTKIQKYTQSSQGARS 185
Query: 733 NYVNALQASLPNLSIKDPSYNLRLQNGRSKEQSLILGHPDFQRDPVKTSIQESGAFLLQH 912
N +N LQASLP LSIK YN RLQNGRSKE + + D QR VKTSIQESGAFL H
Sbjct: 186 N-MNTLQASLPKLSIK---YNSRLQNGRSKEPRFV-EYRDSQRTLVKTSIQESGAFLPPH 240
Query: 913 VPEERYKMQSKPLGICLIIDCVGNDTDVLRDTFSSLGYEVQYFLYLKVEQISKILRKVAR 1092
+ EE Y+MQSKPLGICLIIDC+GNDT L++TF+SLGY +Q FL+ K I++I+R+ A
Sbjct: 241 IREETYRMQSKPLGICLIIDCIGNDTKYLQETFTSLGYHIQLFLFPKSHDITQIVRRYAS 300
Query: 1093 MPQHQDYDSFVCVLVSRGGSQSVFGVDKTLSGFPLDHIRRMFMADVCPTLLGKPKLFFIQ 1272
M QHQDYDSF CVLVS GGSQS+ G D+ SGF LDH++ MF D CP+L GKPKLFFIQ
Sbjct: 301 MAQHQDYDSFACVLVSLGGSQSMMGRDQVHSGFSLDHVKNMFTGDTCPSLRGKPKLFFIQ 360
Query: 1273 IYVTSEGQLEDSSFLEVDGPSVKSMDSKARQPGTCTVHREADFFWSLCKADVSLLERPXX 1452
Y + QLEDSS LEVDGPS+K++DSK QP CT H EAD FWSLC ADVS LE+P
Sbjct: 361 NYESLGSQLEDSS-LEVDGPSIKNVDSKPLQPRHCTTHPEADIFWSLCTADVSHLEKPSS 419
Query: 1453 XXXVYLQCLSQKLGKERKVSLLELHVDLNSKVYDWNSRVSAKERYYVRLQHTLRKKVILS 1632
VYLQ LSQ+L + R+ L++LHV+L KVY WNS VS+KE+Y + LQHTLRKK+IL+
Sbjct: 420 SSSVYLQKLSQQLKQGRRRPLVDLHVELMDKVYAWNSGVSSKEKYSLSLQHTLRKKLILA 479
>ref|NP_033935.2| CASP8 and FADD-like apoptosis regulator isoform 2 [Mus musculus].
Length = 215
Score = 283 bits (725), Expect = 3e-76
Identities = 148/204 (72%), Positives = 172/204 (84%)
Frame = +1
Query: 193 MSAEVIHQVEEALDEDEKEILLFLCRDIAADVVPLNVRDLLDILRERGKLSLVSLAELLY 372
+SAEVIHQVEE LDEDEKE++LFLCRD+ ++ NVRDLLD L ERG+LS +LAELLY
Sbjct: 6 VSAEVIHQVEECLDEDEKEMMLFLCRDVTENLAAPNVRDLLDSLSERGQLSFATLAELLY 65
Query: 373 RVRRFDLLKRILKMDRRTVEAQLLRHPHLISDYRVLMMEIGEGLDKSDVSSLIFLMRDHI 552
RVRRFDLLKRILK D+ TVE L R+PHL+SDYRVL+MEIGE LD++DVSSL+FL RD+
Sbjct: 66 RVRRFDLLKRILKTDKATVEDHLRRNPHLVSDYRVLLMEIGESLDQNDVSSLVFLTRDYT 125
Query: 553 SRSKMAKDKSFLDLVIELEKLNLVAPDHLDLLEKCLRNIHRIDLKTKIQKYKQSAQGAET 732
R K+AKDKSFLDLVIELEKLNL+A D L+LLEKCL+NIHRIDL TKIQKY QS+QGA +
Sbjct: 126 GRGKIAKDKSFLDLVIELEKLNLIASDQLNLLEKCLKNIHRIDLNTKIQKYTQSSQGARS 185
Query: 733 NYVNALQASLPNLSIKDPSYNLRL 804
N +N LQASLP LSIK YN R+
Sbjct: 186 N-MNTLQASLPKLSIK---YNSRV 205
>ref|NP_001073595.1| caspase-8 precursor [Mus musculus].
Length = 480
Score = 122 bits (307), Expect = 1e-27
Identities = 135/513 (26%), Positives = 226/513 (44%), Gaps = 41/513 (7%)
Frame = +1
Query: 208 IHQVEEALDEDEKEILLFLCRDIAADVVPLNVRDLLDI---LRERGKL---SLVSLAELL 369
++ + E L ++ L FLC D + D + LRE+G L +L L ELL
Sbjct: 7 LYAIAEELGSEDLAALKFLCLDYIPHKKQETIEDAQKLFLRLREKGMLEEGNLSFLKELL 66
Query: 370 YRVRRFDLLKRILKMDRRTVEAQLLRHPH--LISDYRVLMMEIGEGLDKSDVSSLIFLMR 543
+ + R+DLL L +R + +L R P IS YRV++ ++ E + + ++ S FL+
Sbjct: 67 FHISRWDLLVNFLDCNREEMVREL-RDPDNAQISPYRVMLFKLSEEVSELELRSFKFLLN 125
Query: 544 DHISRSKMAKDKSFLDLVIELEKLNLVAPDHLDLLEKCLRNIHRIDLKTKIQKYKQSAQG 723
+ I + K+ D S L++ +E+EK ++A ++L+ L+ +++ L KI+ Y++S+
Sbjct: 126 NEIPKCKLEDDLSLLEIFVEMEKRTMLAENNLETLKSICDQVNK-SLLGKIEDYERSS-- 182
Query: 724 AETNYVNALQASLPNLSIKDPSYNLRLQNGRSKEQSLILGHPDFQRDPVKTSIQESGAFL 903
+ SL PS + + S + + + P Q +TS
Sbjct: 183 ------TERRMSLEGREELPPS----VLDEMSLKMAELCDSPREQDSESRTS-------- 224
Query: 904 LQHVPEERYKMQSKPLGICLII-------------------DCVGNDTD--VLRDTFSSL 1020
++ Y+M++KP G CLII D G D D L TF L
Sbjct: 225 -----DKVYQMKNKPRGYCLIINNHDFSKAREDITQLRKMKDRKGTDCDKEALSKTFKEL 279
Query: 1021 GYEVQYFLYLKVEQISKILRKVARMPQHQDYDSFVCVLVSRGGSQSVFGVD-KTLSGFPL 1197
+E+ + +I +IL + H++ D F+C ++S G V+G D K S + L
Sbjct: 280 HFEIVSYDDCTANEIHEILEGY-QSADHKNKDCFICCILSHGDKGVVYGTDGKEASIYDL 338
Query: 1198 DHIRRMFMADVCPTLLGKPKLFFIQIYVTS---EGQLEDSSF------LEVDGPSVKSMD 1350
F CP+L GKPK+FFIQ S +G +++ F LEVD S K+
Sbjct: 339 TSY---FTGSKCPSLSGKPKIFFIQACQGSNFQKGVPDEAGFEQQNHTLEVDSSSHKNY- 394
Query: 1351 SKARQPGTCTVHREADFFWSLCKADVSLLERPXXXXXVYLQCLSQKLGKE--RKVSLLEL 1524
+ EADF + + R Y+Q L Q L + + +L +
Sbjct: 395 ----------IPDEADFLLGMATVKNCVSYRDPVNGTWYIQSLCQSLRERCPQGDDILSI 444
Query: 1525 HVDLNSKVYDWNSRVSAKERYYVRLQHTLRKKV 1623
+N V + + R + K + + TLRKK+
Sbjct: 445 LTGVNYDVSNKDDRRN-KGKQMPQPTFTLRKKL 476
>ref|NP_033942.1| caspase-8 precursor [Mus musculus].
Length = 480
Score = 122 bits (307), Expect = 1e-27
Identities = 135/513 (26%), Positives = 226/513 (44%), Gaps = 41/513 (7%)
Frame = +1
Query: 208 IHQVEEALDEDEKEILLFLCRDIAADVVPLNVRDLLDI---LRERGKL---SLVSLAELL 369
++ + E L ++ L FLC D + D + LRE+G L +L L ELL
Sbjct: 7 LYAIAEELGSEDLAALKFLCLDYIPHKKQETIEDAQKLFLRLREKGMLEEGNLSFLKELL 66
Query: 370 YRVRRFDLLKRILKMDRRTVEAQLLRHPH--LISDYRVLMMEIGEGLDKSDVSSLIFLMR 543
+ + R+DLL L +R + +L R P IS YRV++ ++ E + + ++ S FL+
Sbjct: 67 FHISRWDLLVNFLDCNREEMVREL-RDPDNAQISPYRVMLFKLSEEVSELELRSFKFLLN 125
Query: 544 DHISRSKMAKDKSFLDLVIELEKLNLVAPDHLDLLEKCLRNIHRIDLKTKIQKYKQSAQG 723
+ I + K+ D S L++ +E+EK ++A ++L+ L+ +++ L KI+ Y++S+
Sbjct: 126 NEIPKCKLEDDLSLLEIFVEMEKRTMLAENNLETLKSICDQVNK-SLLGKIEDYERSS-- 182
Query: 724 AETNYVNALQASLPNLSIKDPSYNLRLQNGRSKEQSLILGHPDFQRDPVKTSIQESGAFL 903
+ SL PS + + S + + + P Q +TS
Sbjct: 183 ------TERRMSLEGREELPPS----VLDEMSLKMAELCDSPREQDSESRTS-------- 224
Query: 904 LQHVPEERYKMQSKPLGICLII-------------------DCVGNDTD--VLRDTFSSL 1020
++ Y+M++KP G CLII D G D D L TF L
Sbjct: 225 -----DKVYQMKNKPRGYCLIINNHDFSKAREDITQLRKMKDRKGTDCDKEALSKTFKEL 279
Query: 1021 GYEVQYFLYLKVEQISKILRKVARMPQHQDYDSFVCVLVSRGGSQSVFGVD-KTLSGFPL 1197
+E+ + +I +IL + H++ D F+C ++S G V+G D K S + L
Sbjct: 280 HFEIVSYDDCTANEIHEILEGY-QSADHKNKDCFICCILSHGDKGVVYGTDGKEASIYDL 338
Query: 1198 DHIRRMFMADVCPTLLGKPKLFFIQIYVTS---EGQLEDSSF------LEVDGPSVKSMD 1350
F CP+L GKPK+FFIQ S +G +++ F LEVD S K+
Sbjct: 339 TSY---FTGSKCPSLSGKPKIFFIQACQGSNFQKGVPDEAGFEQQNHTLEVDSSSHKNY- 394
Query: 1351 SKARQPGTCTVHREADFFWSLCKADVSLLERPXXXXXVYLQCLSQKLGKE--RKVSLLEL 1524
+ EADF + + R Y+Q L Q L + + +L +
Sbjct: 395 ----------IPDEADFLLGMATVKNCVSYRDPVNGTWYIQSLCQSLRERCPQGDDILSI 444
Query: 1525 HVDLNSKVYDWNSRVSAKERYYVRLQHTLRKKV 1623
+N V + + R + K + + TLRKK+
Sbjct: 445 LTGVNYDVSNKDDRRN-KGKQMPQPTFTLRKKL 476
>ref|NP_033941.3| caspase-6 precursor [Mus musculus].
Length = 276
Score = 68.6 bits (166), Expect = 2e-11
Identities = 62/227 (27%), Positives = 96/227 (42%), Gaps = 16/227 (7%)
Frame = +1
Query: 916 PEERYKMQSKPLGICLIIDC--------------VGNDTDVLRDTFSSLGYEVQYFLYLK 1053
P E+YKM K G+ LI + D D L FS LG+EV+ F L+
Sbjct: 16 PAEQYKMDHKRRGVALIFNHERFFWHLTLPERRGTNADRDNLTRRFSDLGFEVKCFNDLR 75
Query: 1054 VEQISKILRKVARMPQHQDYDSFVCVLVSRGGSQSVFGVDKTLSGFPLDHIRRMFMADVC 1233
E++ + +V+ H D D F+CV +S G V+ D + + + +F D C
Sbjct: 76 AEELLLKIHEVSTS-SHIDADCFICVFLSHGEGNHVYAYDAKIE---IQTLTGLFKGDKC 131
Query: 1234 PTLLGKPKLFFIQIYVTSEGQLEDSSFLEVDGPSVKSMD-SKARQPGTCTVHREADFFWS 1410
+L+GKPK+F IQ S+ + VD + K + ++ T+ ADF
Sbjct: 132 QSLVGKPKIFIIQACRGSQHDVPVVPLDMVDHQTDKLDNVTQVDAASVYTLPAGADFLMC 191
Query: 1411 LCKADVSLLERPXXXXXVYLQCLSQKLGK-ERKVSLLELHVDLNSKV 1548
A+ R Y+Q L + L + + EL +N KV
Sbjct: 192 YSVAEGYYSHRETVNGSWYIQDLCEMLARYGSSLEFTELLTLVNRKV 238
>ref|NP_031637.1| caspase-7 precursor [Mus musculus].
Length = 303
Score = 67.4 bits (163), Expect = 5e-11
Identities = 62/227 (27%), Positives = 99/227 (43%), Gaps = 15/227 (6%)
Frame = +1
Query: 913 VPEERYKMQSKPLGICLIIDC----------VGNDTD----VLRDTFSSLGYEVQYFLYL 1050
VP Y+M + +G C+II+ V N TD L F +LG+EV
Sbjct: 55 VPTYLYRMDFQKMGKCIIINNKNFDKATGMDVRNGTDKDAGALFKCFQNLGFEVTVHNDC 114
Query: 1051 KVEQISKILRKVARMPQHQDYDSFVCVLVSRGGSQSVFGVDKTLSGFPLDHIRRMFMADV 1230
++ +LRK + H + F CVL+S G ++G D P+ + F D
Sbjct: 115 SCAKMQDLLRKASE-EDHSNSACFACVLLSHGEEDLIYGKDGVT---PIKDLTAHFRGDR 170
Query: 1231 CPTLLGKPKLFFIQIYVTSEGQLEDSSFLEVDGPSVKSMDSKARQPGTCTVHREADFFWS 1410
C TLL KPKLFFIQ +E L+D ++ D + +D+ R + EADF ++
Sbjct: 171 CKTLLEKPKLFFIQACRGTE--LDDG--IQADSGPINDIDANPRN----KIPVEADFLFA 222
Query: 1411 LCKADVSLLERPXXXXXVYLQCLSQKLGKERK-VSLLELHVDLNSKV 1548
R ++Q L L + K + ++++ +N +V
Sbjct: 223 YSTVPGYYSWRNPGKGSWFVQALCSILNEHGKDLEIMQILTRVNDRV 269
>ref|NP_031636.1| caspase-2 [Mus musculus].
Length = 452
Score = 66.2 bits (160), Expect = 1e-10
Identities = 43/129 (33%), Positives = 64/129 (49%), Gaps = 14/129 (10%)
Frame = +1
Query: 928 YKMQSKPLGICLIIDCV------------GNDTD--VLRDTFSSLGYEVQYFLYLKVEQI 1065
Y++QS+P G+ L++ V G D D L F LGY V +++
Sbjct: 192 YRLQSQPRGLALVLSNVHFTGEKDLEFRSGGDVDHTTLVTLFKLLGYNVHVLHDQTAQEM 251
Query: 1066 SKILRKVARMPQHQDYDSFVCVLVSRGGSQSVFGVDKTLSGFPLDHIRRMFMADVCPTLL 1245
+ L+ A++P H+ DS V L+S G ++GVD L L + R+F CP+L
Sbjct: 252 QEKLQNFAQLPAHRVTDSCVVALLSHGVEGGIYGVDGKL--LQLQEVFRLFDNANCPSLQ 309
Query: 1246 GKPKLFFIQ 1272
KPK+FFIQ
Sbjct: 310 NKPKMFFIQ 318
>ref|NP_033940.1| caspase-3 [Mus musculus].
Length = 277
Score = 65.1 bits (157), Expect = 2e-10
Identities = 47/143 (32%), Positives = 69/143 (48%), Gaps = 14/143 (9%)
Frame = +1
Query: 886 ESGAFLLQHVPEERYKMQSKPLGICLIIDCV------------GNDTDV--LRDTFSSLG 1023
+SG +L + YKM +GIC+II+ G D D LR+TF L
Sbjct: 28 DSGIYL-----DSSYKMDYPEMGICIIINNKNFHKSTGMSSRSGTDVDAANLRETFMGLK 82
Query: 1024 YEVQYFLYLKVEQISKILRKVARMPQHQDYDSFVCVLVSRGGSQSVFGVDKTLSGFPLDH 1203
Y+V+ L E I +++ V++ H SFVCV++S G ++G + + L
Sbjct: 83 YQVRNKNDLTREDILELMDSVSK-EDHSKRSSFVCVILSHGDEGVIYGTNGPVE---LKK 138
Query: 1204 IRRMFMADVCPTLLGKPKLFFIQ 1272
+ F D C +L GKPKLF IQ
Sbjct: 139 LTSFFRGDYCRSLTGKPKLFIIQ 161
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 62,798,518
Number of extensions: 1591779
Number of successful extensions: 4561
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 4534
Number of HSP's successfully gapped: 8
Length of query: 800
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 691
Effective length of database: 12,343,635
Effective search space: 8529451785
Effective search space used: 8529451785
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012666
(2402 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001120655.1| CASP8 and FADD-like apoptosis regulator isof... 704 0.0
Alignment gi|NP_003870.4| CASP8 and FADD-like apoptosis regulator isoform... 704 0.0
Alignment gi|NP_001189445.1| CASP8 and FADD-like apoptosis regulator isof... 655 0.0
Alignment gi|NP_001189446.1| CASP8 and FADD-like apoptosis regulator isof... 546 e-155
Alignment gi|NP_001189448.1| CASP8 and FADD-like apoptosis regulator isof... 481 e-135
Alignment gi|NP_001189447.1| CASP8 and FADD-like apoptosis regulator isof... 481 e-135
Alignment gi|NP_001189444.1| CASP8 and FADD-like apoptosis regulator isof... 347 3e-95
Alignment gi|NP_001120656.1| CASP8 and FADD-like apoptosis regulator isof... 317 3e-86
Alignment gi|NP_001073594.1| caspase-8 isoform G precursor [Homo sapiens]. 140 4e-33
Alignment gi|NP_203519.1| caspase-8 isoform B precursor [Homo sapiens]. 134 5e-31
>ref|NP_001120655.1| CASP8 and FADD-like apoptosis regulator isoform 1 [Homo sapiens].
Length = 480
Score = 704 bits (1816), Expect = 0.0
Identities = 361/482 (74%), Positives = 414/482 (85%), Gaps = 2/482 (0%)
Frame = +1
Query: 193 MSAEVIHQVEEALDEDEKEILLFLCRDIAADVVPLNVRDLLDILRERGKLSLVSLAELLY 372
MSAEVIHQVEEALD DEKE+LLFLCRD+A DVVP NVRDLLDILRERGKLS+ LAELLY
Sbjct: 1 MSAEVIHQVEEALDTDEKEMLLFLCRDVAIDVVPPNVRDLLDILRERGKLSVGDLAELLY 60
Query: 373 RVRRFDLLKRILKMDRRTVEAQLLRHPHLISDYRVLMMEIGEGLDKSDVSSLIFLMRDHI 552
RVRRFDLLKRILKMDR+ VE LLR+PHL+SDYRVLM EIGE LDKSDVSSLIFLM+D++
Sbjct: 61 RVRRFDLLKRILKMDRKAVETHLLRNPHLVSDYRVLMAEIGEDLDKSDVSSLIFLMKDYM 120
Query: 553 SRSKMAKDKSFLDLVIELEKLNLVAPDHLDLLEKCLRNIHRIDLKTKIQKYKQSAQGAET 732
R K++K+KSFLDLV+ELEKLNLVAPD LDLLEKCL+NIHRIDLKTKIQKYKQS QGA T
Sbjct: 121 GRGKISKEKSFLDLVVELEKLNLVAPDQLDLLEKCLKNIHRIDLKTKIQKYKQSVQGAGT 180
Query: 733 NYVNALQASLPNLSIKDPSYNLRLQNGRSKEQSLI--LGHPDFQRDPVKTSIQESGAFLL 906
+Y N LQA++ S+KDPS N RL NGRSKEQ L LG Q++PVK SIQES AFL
Sbjct: 181 SYRNVLQAAIQK-SLKDPSNNFRLHNGRSKEQRLKEQLGA---QQEPVKKSIQESEAFLP 236
Query: 907 QHVPEERYKMQSKPLGICLIIDCVGNDTDVLRDTFSSLGYEVQYFLYLKVEQISKILRKV 1086
Q +PEERYKM+SKPLGICLIIDC+GN+T++LRDTF+SLGYEVQ FL+L + IS+IL +
Sbjct: 237 QSIPEERYKMKSKPLGICLIIDCIGNETELLRDTFTSLGYEVQKFLHLSMHGISQILGQF 296
Query: 1087 ARMPQHQDYDSFVCVLVSRGGSQSVFGVDKTLSGFPLDHIRRMFMADVCPTLLGKPKLFF 1266
A MP+H+DYDSFVCVLVSRGGSQSV+GVD+T SG PL HIRRMFM D CP L GKPK+FF
Sbjct: 297 ACMPEHRDYDSFVCVLVSRGGSQSVYGVDQTHSGLPLHHIRRMFMGDSCPYLAGKPKMFF 356
Query: 1267 IQIYVTSEGQLEDSSFLEVDGPSVKSMDSKARQPGTCTVHREADFFWSLCKADVSLLERP 1446
IQ YV SEGQLEDSS LEVDGP++K+++ KA++ G CTVHREADFFWSLC AD+SLLE+
Sbjct: 357 IQNYVVSEGQLEDSSLLEVDGPAMKNVEFKAQKRGLCTVHREADFFWSLCTADMSLLEQS 416
Query: 1447 XXXXXVYLQCLSQKLGKERKVSLLELHVDLNSKVYDWNSRVSAKERYYVRLQHTLRKKVI 1626
+YLQCLSQKL +ERK LL+LH++LN +YDWNSRVSAKE+YYV LQHTLRKK+I
Sbjct: 417 HSSPSLYLQCLSQKLRQERKRPLLDLHIELNGYMYDWNSRVSAKEKYYVWLQHTLRKKLI 476
Query: 1627 LS 1632
LS
Sbjct: 477 LS 478
>ref|NP_003870.4| CASP8 and FADD-like apoptosis regulator isoform 1 [Homo sapiens].
Length = 480
Score = 704 bits (1816), Expect = 0.0
Identities = 361/482 (74%), Positives = 414/482 (85%), Gaps = 2/482 (0%)
Frame = +1
Query: 193 MSAEVIHQVEEALDEDEKEILLFLCRDIAADVVPLNVRDLLDILRERGKLSLVSLAELLY 372
MSAEVIHQVEEALD DEKE+LLFLCRD+A DVVP NVRDLLDILRERGKLS+ LAELLY
Sbjct: 1 MSAEVIHQVEEALDTDEKEMLLFLCRDVAIDVVPPNVRDLLDILRERGKLSVGDLAELLY 60
Query: 373 RVRRFDLLKRILKMDRRTVEAQLLRHPHLISDYRVLMMEIGEGLDKSDVSSLIFLMRDHI 552
RVRRFDLLKRILKMDR+ VE LLR+PHL+SDYRVLM EIGE LDKSDVSSLIFLM+D++
Sbjct: 61 RVRRFDLLKRILKMDRKAVETHLLRNPHLVSDYRVLMAEIGEDLDKSDVSSLIFLMKDYM 120
Query: 553 SRSKMAKDKSFLDLVIELEKLNLVAPDHLDLLEKCLRNIHRIDLKTKIQKYKQSAQGAET 732
R K++K+KSFLDLV+ELEKLNLVAPD LDLLEKCL+NIHRIDLKTKIQKYKQS QGA T
Sbjct: 121 GRGKISKEKSFLDLVVELEKLNLVAPDQLDLLEKCLKNIHRIDLKTKIQKYKQSVQGAGT 180
Query: 733 NYVNALQASLPNLSIKDPSYNLRLQNGRSKEQSLI--LGHPDFQRDPVKTSIQESGAFLL 906
+Y N LQA++ S+KDPS N RL NGRSKEQ L LG Q++PVK SIQES AFL
Sbjct: 181 SYRNVLQAAIQK-SLKDPSNNFRLHNGRSKEQRLKEQLGA---QQEPVKKSIQESEAFLP 236
Query: 907 QHVPEERYKMQSKPLGICLIIDCVGNDTDVLRDTFSSLGYEVQYFLYLKVEQISKILRKV 1086
Q +PEERYKM+SKPLGICLIIDC+GN+T++LRDTF+SLGYEVQ FL+L + IS+IL +
Sbjct: 237 QSIPEERYKMKSKPLGICLIIDCIGNETELLRDTFTSLGYEVQKFLHLSMHGISQILGQF 296
Query: 1087 ARMPQHQDYDSFVCVLVSRGGSQSVFGVDKTLSGFPLDHIRRMFMADVCPTLLGKPKLFF 1266
A MP+H+DYDSFVCVLVSRGGSQSV+GVD+T SG PL HIRRMFM D CP L GKPK+FF
Sbjct: 297 ACMPEHRDYDSFVCVLVSRGGSQSVYGVDQTHSGLPLHHIRRMFMGDSCPYLAGKPKMFF 356
Query: 1267 IQIYVTSEGQLEDSSFLEVDGPSVKSMDSKARQPGTCTVHREADFFWSLCKADVSLLERP 1446
IQ YV SEGQLEDSS LEVDGP++K+++ KA++ G CTVHREADFFWSLC AD+SLLE+
Sbjct: 357 IQNYVVSEGQLEDSSLLEVDGPAMKNVEFKAQKRGLCTVHREADFFWSLCTADMSLLEQS 416
Query: 1447 XXXXXVYLQCLSQKLGKERKVSLLELHVDLNSKVYDWNSRVSAKERYYVRLQHTLRKKVI 1626
+YLQCLSQKL +ERK LL+LH++LN +YDWNSRVSAKE+YYV LQHTLRKK+I
Sbjct: 417 HSSPSLYLQCLSQKLRQERKRPLLDLHIELNGYMYDWNSRVSAKEKYYVWLQHTLRKKLI 476
Query: 1627 LS 1632
LS
Sbjct: 477 LS 478
>ref|NP_001189445.1| CASP8 and FADD-like apoptosis regulator isoform 4 [Homo sapiens].
Length = 445
Score = 655 bits (1689), Expect = 0.0
Identities = 337/480 (70%), Positives = 388/480 (80%)
Frame = +1
Query: 193 MSAEVIHQVEEALDEDEKEILLFLCRDIAADVVPLNVRDLLDILRERGKLSLVSLAELLY 372
MSAEVIHQVEEALD DEKE+LLFLCRD+A DVVP NVRDLLDILRERGKLS+ LAELLY
Sbjct: 1 MSAEVIHQVEEALDTDEKEMLLFLCRDVAIDVVPPNVRDLLDILRERGKLSVGDLAELLY 60
Query: 373 RVRRFDLLKRILKMDRRTVEAQLLRHPHLISDYRVLMMEIGEGLDKSDVSSLIFLMRDHI 552
RVRRFDLLKRILKMDR+ VE LLR+PHL+SDYRVLM EIGE LDKSDVSSLIFLM+D++
Sbjct: 61 RVRRFDLLKRILKMDRKAVETHLLRNPHLVSDYRVLMAEIGEDLDKSDVSSLIFLMKDYM 120
Query: 553 SRSKMAKDKSFLDLVIELEKLNLVAPDHLDLLEKCLRNIHRIDLKTKIQKYKQSAQGAET 732
R K++K+KSFLDLV+ELEKLNLVAPD LDLLEKCL+NIHRIDLKTKIQKYKQS QGA T
Sbjct: 121 GRGKISKEKSFLDLVVELEKLNLVAPDQLDLLEKCLKNIHRIDLKTKIQKYKQSVQGAGT 180
Query: 733 NYVNALQASLPNLSIKDPSYNLRLQNGRSKEQSLILGHPDFQRDPVKTSIQESGAFLLQH 912
+Y N LQA++ S+KDPS N R
Sbjct: 181 SYRNVLQAAIQK-SLKDPSNNFR------------------------------------S 203
Query: 913 VPEERYKMQSKPLGICLIIDCVGNDTDVLRDTFSSLGYEVQYFLYLKVEQISKILRKVAR 1092
+PEERYKM+SKPLGICLIIDC+GN+T++LRDTF+SLGYEVQ FL+L + IS+IL + A
Sbjct: 204 IPEERYKMKSKPLGICLIIDCIGNETELLRDTFTSLGYEVQKFLHLSMHGISQILGQFAC 263
Query: 1093 MPQHQDYDSFVCVLVSRGGSQSVFGVDKTLSGFPLDHIRRMFMADVCPTLLGKPKLFFIQ 1272
MP+H+DYDSFVCVLVSRGGSQSV+GVD+T SG PL HIRRMFM D CP L GKPK+FFIQ
Sbjct: 264 MPEHRDYDSFVCVLVSRGGSQSVYGVDQTHSGLPLHHIRRMFMGDSCPYLAGKPKMFFIQ 323
Query: 1273 IYVTSEGQLEDSSFLEVDGPSVKSMDSKARQPGTCTVHREADFFWSLCKADVSLLERPXX 1452
YV SEGQLEDSS LEVDGP++K+++ KA++ G CTVHREADFFWSLC AD+SLLE+
Sbjct: 324 NYVVSEGQLEDSSLLEVDGPAMKNVEFKAQKRGLCTVHREADFFWSLCTADMSLLEQSHS 383
Query: 1453 XXXVYLQCLSQKLGKERKVSLLELHVDLNSKVYDWNSRVSAKERYYVRLQHTLRKKVILS 1632
+YLQCLSQKL +ERK LL+LH++LN +YDWNSRVSAKE+YYV LQHTLRKK+ILS
Sbjct: 384 SPSLYLQCLSQKLRQERKRPLLDLHIELNGYMYDWNSRVSAKEKYYVWLQHTLRKKLILS 443
>ref|NP_001189446.1| CASP8 and FADD-like apoptosis regulator isoform 5 [Homo sapiens].
Length = 384
Score = 546 bits (1408), Expect = e-155
Identities = 279/386 (72%), Positives = 326/386 (84%), Gaps = 2/386 (0%)
Frame = +1
Query: 481 MMEIGEGLDKSDVSSLIFLMRDHISRSKMAKDKSFLDLVIELEKLNLVAPDHLDLLEKCL 660
M EIGE LDKSDVSSLIFLM+D++ R K++K+KSFLDLV+ELEKLNLVAPD LDLLEKCL
Sbjct: 1 MAEIGEDLDKSDVSSLIFLMKDYMGRGKISKEKSFLDLVVELEKLNLVAPDQLDLLEKCL 60
Query: 661 RNIHRIDLKTKIQKYKQSAQGAETNYVNALQASLPNLSIKDPSYNLRLQNGRSKEQSLI- 837
+NIHRIDLKTKIQKYKQS QGA T+Y N LQA++ S+KDPS N RL NGRSKEQ L
Sbjct: 61 KNIHRIDLKTKIQKYKQSVQGAGTSYRNVLQAAIQK-SLKDPSNNFRLHNGRSKEQRLKE 119
Query: 838 -LGHPDFQRDPVKTSIQESGAFLLQHVPEERYKMQSKPLGICLIIDCVGNDTDVLRDTFS 1014
LG Q++PVK SIQES AFL Q +PEERYKM+SKPLGICLIIDC+GN+T++LRDTF+
Sbjct: 120 QLGA---QQEPVKKSIQESEAFLPQSIPEERYKMKSKPLGICLIIDCIGNETELLRDTFT 176
Query: 1015 SLGYEVQYFLYLKVEQISKILRKVARMPQHQDYDSFVCVLVSRGGSQSVFGVDKTLSGFP 1194
SLGYEVQ FL+L + IS+IL + A MP+H+DYDSFVCVLVSRGGSQSV+GVD+T SG P
Sbjct: 177 SLGYEVQKFLHLSMHGISQILGQFACMPEHRDYDSFVCVLVSRGGSQSVYGVDQTHSGLP 236
Query: 1195 LDHIRRMFMADVCPTLLGKPKLFFIQIYVTSEGQLEDSSFLEVDGPSVKSMDSKARQPGT 1374
L HIRRMFM D CP L GKPK+FFIQ YV SEGQLEDSS LEVDGP++K+++ KA++ G
Sbjct: 237 LHHIRRMFMGDSCPYLAGKPKMFFIQNYVVSEGQLEDSSLLEVDGPAMKNVEFKAQKRGL 296
Query: 1375 CTVHREADFFWSLCKADVSLLERPXXXXXVYLQCLSQKLGKERKVSLLELHVDLNSKVYD 1554
CTVHREADFFWSLC AD+SLLE+ +YLQCLSQKL +ERK LL+LH++LN +YD
Sbjct: 297 CTVHREADFFWSLCTADMSLLEQSHSSPSLYLQCLSQKLRQERKRPLLDLHIELNGYMYD 356
Query: 1555 WNSRVSAKERYYVRLQHTLRKKVILS 1632
WNSRVSAKE+YYV LQHTLRKK+ILS
Sbjct: 357 WNSRVSAKEKYYVWLQHTLRKKLILS 382
>ref|NP_001189448.1| CASP8 and FADD-like apoptosis regulator isoform 6 [Homo sapiens].
Length = 366
Score = 481 bits (1239), Expect = e-135
Identities = 247/343 (72%), Positives = 288/343 (83%), Gaps = 2/343 (0%)
Frame = +1
Query: 481 MMEIGEGLDKSDVSSLIFLMRDHISRSKMAKDKSFLDLVIELEKLNLVAPDHLDLLEKCL 660
M EIGE LDKSDVSSLIFLM+D++ R K++K+KSFLDLV+ELEKLNLVAPD LDLLEKCL
Sbjct: 1 MAEIGEDLDKSDVSSLIFLMKDYMGRGKISKEKSFLDLVVELEKLNLVAPDQLDLLEKCL 60
Query: 661 RNIHRIDLKTKIQKYKQSAQGAETNYVNALQASLPNLSIKDPSYNLRLQNGRSKEQSLI- 837
+NIHRIDLKTKIQKYKQS QGA T+Y N LQA++ S+KDPS N RL NGRSKEQ L
Sbjct: 61 KNIHRIDLKTKIQKYKQSVQGAGTSYRNVLQAAIQK-SLKDPSNNFRLHNGRSKEQRLKE 119
Query: 838 -LGHPDFQRDPVKTSIQESGAFLLQHVPEERYKMQSKPLGICLIIDCVGNDTDVLRDTFS 1014
LG Q++PVK SIQES AFL Q +PEERYKM+SKPLGICLIIDC+GN+T++LRDTF+
Sbjct: 120 QLGA---QQEPVKKSIQESEAFLPQSIPEERYKMKSKPLGICLIIDCIGNETELLRDTFT 176
Query: 1015 SLGYEVQYFLYLKVEQISKILRKVARMPQHQDYDSFVCVLVSRGGSQSVFGVDKTLSGFP 1194
SLGYEVQ FL+L + IS+IL + A MP+H+DYDSFVCVLVSRGGSQSV+GVD+T SG P
Sbjct: 177 SLGYEVQKFLHLSMHGISQILGQFACMPEHRDYDSFVCVLVSRGGSQSVYGVDQTHSGLP 236
Query: 1195 LDHIRRMFMADVCPTLLGKPKLFFIQIYVTSEGQLEDSSFLEVDGPSVKSMDSKARQPGT 1374
L HIRRMFM D CP L GKPK+FFIQ YV SEGQLEDSS LEVDGP++K+++ KA++ G
Sbjct: 237 LHHIRRMFMGDSCPYLAGKPKMFFIQNYVVSEGQLEDSSLLEVDGPAMKNVEFKAQKRGL 296
Query: 1375 CTVHREADFFWSLCKADVSLLERPXXXXXVYLQCLSQKLGKER 1503
CTVHREADFFWSLC AD+SLLE+ +YLQCLSQKL +ER
Sbjct: 297 CTVHREADFFWSLCTADMSLLEQSHSSPSLYLQCLSQKLRQER 339
>ref|NP_001189447.1| CASP8 and FADD-like apoptosis regulator isoform 6 [Homo sapiens].
Length = 366
Score = 481 bits (1239), Expect = e-135
Identities = 247/343 (72%), Positives = 288/343 (83%), Gaps = 2/343 (0%)
Frame = +1
Query: 481 MMEIGEGLDKSDVSSLIFLMRDHISRSKMAKDKSFLDLVIELEKLNLVAPDHLDLLEKCL 660
M EIGE LDKSDVSSLIFLM+D++ R K++K+KSFLDLV+ELEKLNLVAPD LDLLEKCL
Sbjct: 1 MAEIGEDLDKSDVSSLIFLMKDYMGRGKISKEKSFLDLVVELEKLNLVAPDQLDLLEKCL 60
Query: 661 RNIHRIDLKTKIQKYKQSAQGAETNYVNALQASLPNLSIKDPSYNLRLQNGRSKEQSLI- 837
+NIHRIDLKTKIQKYKQS QGA T+Y N LQA++ S+KDPS N RL NGRSKEQ L
Sbjct: 61 KNIHRIDLKTKIQKYKQSVQGAGTSYRNVLQAAIQK-SLKDPSNNFRLHNGRSKEQRLKE 119
Query: 838 -LGHPDFQRDPVKTSIQESGAFLLQHVPEERYKMQSKPLGICLIIDCVGNDTDVLRDTFS 1014
LG Q++PVK SIQES AFL Q +PEERYKM+SKPLGICLIIDC+GN+T++LRDTF+
Sbjct: 120 QLGA---QQEPVKKSIQESEAFLPQSIPEERYKMKSKPLGICLIIDCIGNETELLRDTFT 176
Query: 1015 SLGYEVQYFLYLKVEQISKILRKVARMPQHQDYDSFVCVLVSRGGSQSVFGVDKTLSGFP 1194
SLGYEVQ FL+L + IS+IL + A MP+H+DYDSFVCVLVSRGGSQSV+GVD+T SG P
Sbjct: 177 SLGYEVQKFLHLSMHGISQILGQFACMPEHRDYDSFVCVLVSRGGSQSVYGVDQTHSGLP 236
Query: 1195 LDHIRRMFMADVCPTLLGKPKLFFIQIYVTSEGQLEDSSFLEVDGPSVKSMDSKARQPGT 1374
L HIRRMFM D CP L GKPK+FFIQ YV SEGQLEDSS LEVDGP++K+++ KA++ G
Sbjct: 237 LHHIRRMFMGDSCPYLAGKPKMFFIQNYVVSEGQLEDSSLLEVDGPAMKNVEFKAQKRGL 296
Query: 1375 CTVHREADFFWSLCKADVSLLERPXXXXXVYLQCLSQKLGKER 1503
CTVHREADFFWSLC AD+SLLE+ +YLQCLSQKL +ER
Sbjct: 297 CTVHREADFFWSLCTADMSLLEQSHSSPSLYLQCLSQKLRQER 339
>ref|NP_001189444.1| CASP8 and FADD-like apoptosis regulator isoform 3 [Homo sapiens].
Length = 235
Score = 347 bits (890), Expect = 3e-95
Identities = 168/233 (72%), Positives = 200/233 (85%)
Frame = +1
Query: 934 MQSKPLGICLIIDCVGNDTDVLRDTFSSLGYEVQYFLYLKVEQISKILRKVARMPQHQDY 1113
M+SKPLGICLIIDC+GN+T++LRDTF+SLGYEVQ FL+L + IS+IL + A MP+H+DY
Sbjct: 1 MKSKPLGICLIIDCIGNETELLRDTFTSLGYEVQKFLHLSMHGISQILGQFACMPEHRDY 60
Query: 1114 DSFVCVLVSRGGSQSVFGVDKTLSGFPLDHIRRMFMADVCPTLLGKPKLFFIQIYVTSEG 1293
DSFVCVLVSRGGSQSV+GVD+T SG PL HIRRMFM D CP L GKPK+FFIQ YV SEG
Sbjct: 61 DSFVCVLVSRGGSQSVYGVDQTHSGLPLHHIRRMFMGDSCPYLAGKPKMFFIQNYVVSEG 120
Query: 1294 QLEDSSFLEVDGPSVKSMDSKARQPGTCTVHREADFFWSLCKADVSLLERPXXXXXVYLQ 1473
QLEDSS LEVDGP++K+++ KA++ G CTVHREADFFWSLC AD+SLLE+ +YLQ
Sbjct: 121 QLEDSSLLEVDGPAMKNVEFKAQKRGLCTVHREADFFWSLCTADMSLLEQSHSSPSLYLQ 180
Query: 1474 CLSQKLGKERKVSLLELHVDLNSKVYDWNSRVSAKERYYVRLQHTLRKKVILS 1632
CLSQKL +ERK LL+LH++LN +YDWNSRVSAKE+YYV LQHTLRKK+ILS
Sbjct: 181 CLSQKLRQERKRPLLDLHIELNGYMYDWNSRVSAKEKYYVWLQHTLRKKLILS 233
>ref|NP_001120656.1| CASP8 and FADD-like apoptosis regulator isoform 2 [Homo sapiens].
Length = 221
Score = 317 bits (812), Expect = 3e-86
Identities = 163/204 (79%), Positives = 182/204 (89%)
Frame = +1
Query: 193 MSAEVIHQVEEALDEDEKEILLFLCRDIAADVVPLNVRDLLDILRERGKLSLVSLAELLY 372
MSAEVIHQVEEALD DEKE+LLFLCRD+A DVVP NVRDLLDILRERGKLS+ LAELLY
Sbjct: 1 MSAEVIHQVEEALDTDEKEMLLFLCRDVAIDVVPPNVRDLLDILRERGKLSVGDLAELLY 60
Query: 373 RVRRFDLLKRILKMDRRTVEAQLLRHPHLISDYRVLMMEIGEGLDKSDVSSLIFLMRDHI 552
RVRRFDLLKRILKMDR+ VE LLR+PHL+SDYRVLM EIGE LDKSDVSSLIFLM+D++
Sbjct: 61 RVRRFDLLKRILKMDRKAVETHLLRNPHLVSDYRVLMAEIGEDLDKSDVSSLIFLMKDYM 120
Query: 553 SRSKMAKDKSFLDLVIELEKLNLVAPDHLDLLEKCLRNIHRIDLKTKIQKYKQSAQGAET 732
R K++K+KSFLDLV+ELEKLNLVAPD LDLLEKCL+NIHRIDLKTKIQKYKQS QGA T
Sbjct: 121 GRGKISKEKSFLDLVVELEKLNLVAPDQLDLLEKCLKNIHRIDLKTKIQKYKQSVQGAGT 180
Query: 733 NYVNALQASLPNLSIKDPSYNLRL 804
+Y N LQA++ S+KDPS N R+
Sbjct: 181 SYRNVLQAAIQK-SLKDPSNNFRM 203
>ref|NP_001073594.1| caspase-8 isoform G precursor [Homo sapiens].
Length = 538
Score = 140 bits (354), Expect = 4e-33
Identities = 146/537 (27%), Positives = 243/537 (45%), Gaps = 30/537 (5%)
Frame = +1
Query: 106 SEMKSVPSWASVDWTRFLLLPFLGMTLYRMSAEVIHQVEEALDEDEKEILLFLCRDIAAD 285
SE VP D ++LLPF M R ++ + E LD ++ L FL D
Sbjct: 39 SETAMVPGKGGAD---YILLPFKKMDFSRN----LYDIGEQLDSEDLASLKFLSLDYIPQ 91
Query: 286 VVPLNVRDLLDI---LRERGKL---SLVSLAELLYRVRRFDLLKRILKMDRRTVEAQLLR 447
++D L + L+E+ L +L L ELL+R+ R DLL L + +E +L
Sbjct: 92 RKQEPIKDALMLFQRLQEKRMLEESNLSFLKELLFRINRLDLLITYLNTRKEEMERELQT 151
Query: 448 HPHL-ISDYRVLMMEIGEGLDKSDVSSLIFLMRDHISRSKMAKDKSFLDLVIELEKLNLV 624
IS YRV++ +I E + +S++ S FL+++ IS+ K+ D + LD+ IE+EK ++
Sbjct: 152 PGRAQISAYRVMLYQISEEVSRSELRSFKFLLQEEISKCKLDDDMNLLDIFIEMEKRVIL 211
Query: 625 APDHLDLLEKCLRNIHRIDLKTKIQKYKQSAQGAETNYVNALQASLPNLSIKDPSYNLRL 804
LD+L++ I++ LK I Y++ ++ ++L+ S S
Sbjct: 212 GEGKLDILKRVCAQINKSLLKI-INDYEEFSKERS----SSLEGSPDEFS---------- 256
Query: 805 QNGRSKEQSLILGHPDFQRDPVKTSIQESGAFLLQHVPEERYKMQSKPLGICLII----- 969
NG +E ++ D R+ Q+S + L V Y+M+SKP G CLII
Sbjct: 257 -NG--EELCGVMTISDSPRE------QDSESQTLDKV----YQMKSKPRGYCLIINNHNF 303
Query: 970 --------------DCVGN--DTDVLRDTFSSLGYEVQYFLYLKVEQISKILRKVARMPQ 1101
D G D L TF L +E++ VEQI +IL K+ ++
Sbjct: 304 AKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHDDCTVEQIYEIL-KIYQLMD 362
Query: 1102 HQDYDSFVCVLVSRGGSQSVFGVDKTLSGFPLDHIRRMFMADVCPTLLGKPKLFFIQIYV 1281
H + D F+C ++S G ++G D + P+ + F CP+L GKPK+FFIQ
Sbjct: 363 HSNMDCFICCILSHGDKGIIYGTDGQEA--PIYELTSQFTGLKCPSLAGKPKVFFIQ--A 418
Query: 1282 TSEGQLEDSSFLEVDGPSVKSMDSKARQPGTCTVHREADFFWSLCKADVSLLERPXXXXX 1461
+ +E D ++ P T + EADF + + + R
Sbjct: 419 CQGDNYQKGIPVETDSEEQPYLEMDLSSPQTRYIPDEADFLLGMATVNNCVSYRNPAEGT 478
Query: 1462 VYLQCLSQKLGKE--RKVSLLELHVDLNSKVYDWNSRVSAKERYYVRLQHTLRKKVI 1626
Y+Q L Q L + R +L + ++N +V + + + + ++ + TLRKK++
Sbjct: 479 WYIQSLCQSLRERCPRGDDILTILTEVNYEVSNKDDKKNMGKQ-MPQPTFTLRKKLV 534
>ref|NP_203519.1| caspase-8 isoform B precursor [Homo sapiens].
Length = 479
Score = 134 bits (336), Expect = 5e-31
Identities = 135/503 (26%), Positives = 230/503 (45%), Gaps = 30/503 (5%)
Frame = +1
Query: 208 IHQVEEALDEDEKEILLFLCRDIAADVVPLNVRDLLDI---LRERGKL---SLVSLAELL 369
++ + E LD ++ L FL D ++D L + L+E+ L +L L ELL
Sbjct: 7 LYDIGEQLDSEDLASLKFLSLDYIPQRKQEPIKDALMLFQRLQEKRMLEESNLSFLKELL 66
Query: 370 YRVRRFDLLKRILKMDRRTVEAQLLRHPHL-ISDYRVLMMEIGEGLDKSDVSSLIFLMRD 546
+R+ R DLL L + +E +L IS YRV++ +I E + +S++ S FL+++
Sbjct: 67 FRINRLDLLITYLNTRKEEMERELQTPGRAQISAYRVMLYQISEEVSRSELRSFKFLLQE 126
Query: 547 HISRSKMAKDKSFLDLVIELEKLNLVAPDHLDLLEKCLRNIHRIDLKTKIQKYKQSAQGA 726
IS+ K+ D + LD+ IE+EK ++ LD+L++ I++ LK I Y++ ++
Sbjct: 127 EISKCKLDDDMNLLDIFIEMEKRVILGEGKLDILKRVCAQINKSLLKI-INDYEEFSKER 185
Query: 727 ETNYVNALQASLPNLSIKDPSYNLRLQNGRSKEQSLILGHPDFQRDPVKTSIQESGAFLL 906
++ L+ S S NG +E ++ D R+ Q+S + L
Sbjct: 186 SSS----LEGSPDEFS-----------NG--EELCGVMTISDSPRE------QDSESQTL 222
Query: 907 QHVPEERYKMQSKPLGICLII-------------------DCVGN--DTDVLRDTFSSLG 1023
V Y+M+SKP G CLII D G D L TF L
Sbjct: 223 DKV----YQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELH 278
Query: 1024 YEVQYFLYLKVEQISKILRKVARMPQHQDYDSFVCVLVSRGGSQSVFGVDKTLSGFPLDH 1203
+E++ VEQI +IL K+ ++ H + D F+C ++S G ++G D + P+
Sbjct: 279 FEIKPHDDCTVEQIYEIL-KIYQLMDHSNMDCFICCILSHGDKGIIYGTDGQEA--PIYE 335
Query: 1204 IRRMFMADVCPTLLGKPKLFFIQIYVTSEGQLEDSSFLEVDGPSVKSMDSKARQPGTCTV 1383
+ F CP+L GKPK+FFIQ + +E D ++ P T +
Sbjct: 336 LTSQFTGLKCPSLAGKPKVFFIQ--ACQGDNYQKGIPVETDSEEQPYLEMDLSSPQTRYI 393
Query: 1384 HREADFFWSLCKADVSLLERPXXXXXVYLQCLSQKLGKE--RKVSLLELHVDLNSKVYDW 1557
EADF + + + R Y+Q L Q L + R +L + ++N +V +
Sbjct: 394 PDEADFLLGMATVNNCVSYRNPAEGTWYIQSLCQSLRERCPRGDDILTILTEVNYEVSNK 453
Query: 1558 NSRVSAKERYYVRLQHTLRKKVI 1626
+ + + ++ + TLRKK++
Sbjct: 454 DDKKNMGKQ-MPQPTFTLRKKLV 475
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 73,529,621
Number of extensions: 1846605
Number of successful extensions: 5736
Number of sequences better than 1.0e-05: 29
Number of HSP's gapped: 5665
Number of HSP's successfully gapped: 35
Length of query: 800
Length of database: 18,297,164
Length adjustment: 111
Effective length of query: 689
Effective length of database: 14,638,160
Effective search space: 10085692240
Effective search space used: 10085692240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012666
(2402 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 1019 0.0
>Sscrofa_Chr15
|| Length = 157681621
Score = 1019 bits (514), Expect = 0.0
Identities = 514/514 (100%)
Strand = Plus / Plus
Query: 989 cagatgttcttcgggacaccttcagttccctgggctatgaagtacagtatttcttgtatc 1048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116180317 cagatgttcttcgggacaccttcagttccctgggctatgaagtacagtatttcttgtatc 116180376
Query: 1049 tgaaagtggagcaaataagcaagattcttcgcaaagttgcccgtatgccccaacaccaag 1108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116180377 tgaaagtggagcaaataagcaagattcttcgcaaagttgcccgtatgccccaacaccaag 116180436
Query: 1109 actacgacagtttcgtgtgtgtccttgtgagccgagggggctcccagagcgtgtttggcg 1168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116180437 actacgacagtttcgtgtgtgtccttgtgagccgagggggctcccagagcgtgtttggcg 116180496
Query: 1169 tggataagactctctccgggttccctttggatcatatccgaaggatgttcatggcagatg 1228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116180497 tggataagactctctccgggttccctttggatcatatccgaaggatgttcatggcagatg 116180556
Query: 1229 tatgccctactctcttagggaagccaaagctcttttttattcagatctatgtgacatcag 1288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116180557 tatgccctactctcttagggaagccaaagctcttttttattcagatctatgtgacatcag 116180616
Query: 1289 agggccagctggaggacagcagcttcctggaggtggacgggccatcagtgaaaagtatgg 1348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116180617 agggccagctggaggacagcagcttcctggaggtggacgggccatcagtgaaaagtatgg 116180676
Query: 1349 attccaaggctaggcagccagggacctgcacagttcaccgagaagctgacttcttctgga 1408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116180677 attccaaggctaggcagccagggacctgcacagttcaccgagaagctgacttcttctgga 116180736
Query: 1409 gcctgtgcaaagccgatgtgtccctgttggagcggccctccagctcatcgtcagtgtacc 1468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116180737 gcctgtgcaaagccgatgtgtccctgttggagcggccctccagctcatcgtcagtgtacc 116180796
Query: 1469 tgcagtgcctctcccagaagctgggaaaagaaag 1502
||||||||||||||||||||||||||||||||||
Sbjct: 116180797 tgcagtgcctctcccagaagctgggaaaagaaag 116180830
Score = 1011 bits (510), Expect = 0.0
Identities = 513/514 (99%)
Strand = Plus / Plus
Query: 989 cagatgttcttcgggacaccttcagttccctgggctatgaagtacagtatttcttgtatc 1048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116246248 cagatgttcttcgggacaccttcagttccctgggctatgaagtacagtatttcttgtatc 116246307
Query: 1049 tgaaagtggagcaaataagcaagattcttcgcaaagttgcccgtatgccccaacaccaag 1108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116246308 tgaaagtggagcaaataagcaagattcttcgcaaagttgcccgtatgccccaacaccaag 116246367
Query: 1109 actacgacagtttcgtgtgtgtccttgtgagccgagggggctcccagagcgtgtttggcg 1168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116246368 actacgacagtttcgtgtgtgtccttgtgagccgagggggctcccagagcgtgtttggcg 116246427
Query: 1169 tggataagactctctccgggttccctttggatcatatccgaaggatgttcatggcagatg 1228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116246428 tggataagactctctccgggttccctttggatcatatccgaaggatgttcatggcagatg 116246487
Query: 1229 tatgccctactctcttagggaagccaaagctcttttttattcagatctatgtgacatcag 1288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116246488 tatgccctactctcttagggaagccaaagctcttttttattcagatctatgtgacatcag 116246547
Query: 1289 agggccagctggaggacagcagcttcctggaggtggacgggccatcagtgaaaagtatgg 1348
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 116246548 agggccagctggaggacagcagcttcctggaggtggatgggccatcagtgaaaagtatgg 116246607
Query: 1349 attccaaggctaggcagccagggacctgcacagttcaccgagaagctgacttcttctgga 1408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116246608 attccaaggctaggcagccagggacctgcacagttcaccgagaagctgacttcttctgga 116246667
Query: 1409 gcctgtgcaaagccgatgtgtccctgttggagcggccctccagctcatcgtcagtgtacc 1468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116246668 gcctgtgcaaagccgatgtgtccctgttggagcggccctccagctcatcgtcagtgtacc 116246727
Query: 1469 tgcagtgcctctcccagaagctgggaaaagaaag 1502
||||||||||||||||||||||||||||||||||
Sbjct: 116246728 tgcagtgcctctcccagaagctgggaaaagaaag 116246761
Score = 779 bits (393), Expect = 0.0
Identities = 407/414 (98%)
Strand = Plus / Plus
Query: 61 gaactcctccattggaaaggattctgaaagaaatgaagaaaaccatcagaaatgaagtca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116124301 gaactcctccattggaaaggattctgaaagaaatgaagaaaaccatcagaaatgaagtca 116124360
Query: 121 gtaccctcgtgggcttctgttgactggactagatttctcttactgccgttccttggaatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116124361 gtaccctcgtgggcttctgttgactggactagatttctcttactgccgttccttggaatg 116124420
Query: 181 acactgtacagaatgtcggctgaggtcatccatcaggtggaagaagcacttgatgaagat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116124421 acactgtacagaatgtcggctgaggtcatccatcaggtggaagaagcacttgatgaagat 116124480
Query: 241 gagaaggagatacttcnnnnnnngtgccgagacattgctgcagatgtggttccacttaat 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 116124481 gagaaggagatacttctttttttgtgccgagacattgctgcagatgtggttccacttaat 116124540
Query: 301 gtcagggaccttctggatattttaagagagaggggaaagctgtctcttgtgagcctggct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116124541 gtcagggaccttctggatattttaagagagaggggaaagctgtctcttgtgagcctggct 116124600
Query: 361 gagctgctctacagagtcaggcggtttgacttgctcaagaggatcttgaagatggacaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116124601 gagctgctctacagagtcaggcggtttgacttgctcaagaggatcttgaagatggacaga 116124660
Query: 421 cggacagtggaggcccagctgctcaggcaccctcatcttatttcagactatagg 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116124661 cggacagtggaggcccagctgctcaggcaccctcatcttatttcagactatagg 116124714
Score = 406 bits (205), Expect = e-110
Identities = 205/205 (100%)
Strand = Plus / Plus
Query: 1501 agaaaagtctcactcctggaactccacgttgacctcaacagcaaagtatatgattggaac 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116183794 agaaaagtctcactcctggaactccacgttgacctcaacagcaaagtatatgattggaac 116183853
Query: 1561 agcagagtgtctgctaaggagaggtactacgtcaggctacagcacactctgagaaagaaa 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116183854 agcagagtgtctgctaaggagaggtactacgtcaggctacagcacactctgagaaagaaa 116183913
Query: 1621 gtcatcctctcttgcaaatgaagagccaaaggcccctcttagccctgcagtctctattat 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116183914 gtcatcctctcttgcaaatgaagagccaaaggcccctcttagccctgcagtctctattat 116183973
Query: 1681 tggccagagagtagtgtccaagcca 1705
|||||||||||||||||||||||||
Sbjct: 116183974 tggccagagagtagtgtccaagcca 116183998
Score = 355 bits (179), Expect = 7e-95
Identities = 179/179 (100%)
Strand = Plus / Plus
Query: 1765 tatgaggtgggtgaggcaaagtctgggctggtgctaaaatgaccatctctgaggaatgcc 1824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116184058 tatgaggtgggtgaggcaaagtctgggctggtgctaaaatgaccatctctgaggaatgcc 116184117
Query: 1825 agatgggaagaagtgtttgaaccagagcctctgaggtgaaggtcttggtctctattgctg 1884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116184118 agatgggaagaagtgtttgaaccagagcctctgaggtgaaggtcttggtctctattgctg 116184177
Query: 1885 aaatagccaggtcattgttgggaaggaaacagctttgaaatgtcaaaactgagtactgt 1943
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116184178 aaatagccaggtcattgttgggaaggaaacagctttgaaatgtcaaaactgagtactgt 116184236
Score = 274 bits (138), Expect = 2e-70
Identities = 138/138 (100%)
Strand = Plus / Plus
Query: 578 agagtttcttggatcttgtgattgaattggagaaactaaacctggttgctccagatcact 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116158770 agagtttcttggatcttgtgattgaattggagaaactaaacctggttgctccagatcact 116158829
Query: 638 tggatttattagaaaaatgcctaaggaacattcacagaatagacctgaagacgaaaatcc 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116158830 tggatttattagaaaaatgcctaaggaacattcacagaatagacctgaagacgaaaatcc 116158889
Query: 698 agaaatacaagcagtctg 715
||||||||||||||||||
Sbjct: 116158890 agaaatacaagcagtctg 116158907
Score = 214 bits (108), Expect = 2e-52
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 472 agggtgctgatgatggagattggtgagggtttggataaatccgatgtgtcttcattaatc 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116156473 agggtgctgatgatggagattggtgagggtttggataaatccgatgtgtcttcattaatc 116156532
Query: 532 ttcctcatgagagatcacataagccgaagcaagatggccaaggataag 579
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116156533 ttcctcatgagagatcacataagccgaagcaagatggccaaggataag 116156580
Score = 172 bits (87), Expect = 6e-40
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 715 gctcaaggagcagaaacaaattacgtaaatgctctccaggcatctctgccaaacttgagt 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116159907 gctcaaggagcagaaacaaattacgtaaatgctctccaggcatctctgccaaacttgagt 116159966
Query: 775 atcaaggacccttcatataacctaagg 801
|||||||||||||||||||||||||||
Sbjct: 116159967 atcaaggacccttcatataacctaagg 116159993
Score = 168 bits (85), Expect = 9e-39
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 907 cagcatgtaccggaagagagatataagatgcagagcaagcccctaggaatctgcctgata 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116168504 cagcatgtaccggaagagagatataagatgcagagcaagcccctaggaatctgcctgata 116168563
Query: 967 attgattgcgttggcaatgacacag 991
|||||||||||||||||||||||||
Sbjct: 116168564 attgattgcgttggcaatgacacag 116168588
Score = 121 bits (61), Expect = 2e-24
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 1 aaacaggaaacggcgctcggggaggctgtagcgccacggagtgtttcacctcagagggct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116106089 aaacaggaaacggcgctcggggaggctgtagcgccacggagtgtttcacctcagagggct 116106148
Query: 61 g 61
|
Sbjct: 116106149 g 116106149
Score = 119 bits (60), Expect = 7e-24
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 801 gctccagaatgggaggagtaaagaacaaagcctcatcttgggacatccagattttcaaag 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116165057 gctccagaatgggaggagtaaagaacaaagcctcatcttgggacatccagattttcaaag 116165116
Score = 99.6 bits (50), Expect = 7e-18
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 860 gagacccagtgaagacatccattcaagaatctggggcatttttgcttcag 909
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116167781 gagacccagtgaagacatccattcaagaatctggggcatttttgcttcag 116167830
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 61,289,010
Number of extensions: 1080
Number of successful extensions: 1080
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1079
Number of HSP's successfully gapped: 12
Length of query: 2402
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2380
Effective length of database: 2,808,408,574
Effective search space: 6684012406120
Effective search space used: 6684012406120
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)