Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012672
(1229 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776683.1| non-muscle caldesmon [Bos taurus]. 155 7e-38
>ref|NP_776683.1| non-muscle caldesmon [Bos taurus].
Length = 535
Score = 155 bits (392), Expect = 7e-38
Identities = 89/180 (49%), Positives = 99/180 (55%)
Frame = +2
Query: 446 MDDFXXXXXXXXXXXXXXXXXAERIAYQRNDDDXXXXXXXXXXXXXXXXXXXXXXXXSLG 625
MDDF AERIAYQRNDDD +LG
Sbjct: 1 MDDFERRRELRRQKREEMRLEAERIAYQRNDDDEEEAARERRRRARQERLRQKQEEEALG 60
Query: 626 QVTDQVEVNTQNSVPDEQVKTTTTNTQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKE 805
QVTDQVEVNTQNSVPDE+VKTTTTNTQ KE
Sbjct: 61 QVTDQVEVNTQNSVPDEEVKTTTTNTQAEGDDEAALLERLARREERRQKRLQEALERQKE 120
Query: 806 FDPTIADASSSPPSRRMQNSTAEDETAEKDEKSESRQERYEIEETEVVTKSYQKNDWRDA 985
FDPTI DAS S SRRMQN T ++ETAEK+ +SESRQER E+EETE+VTKS+QKNDW +A
Sbjct: 121 FDPTITDASLSLSSRRMQNDTTDNETAEKEGRSESRQERQELEETEIVTKSHQKNDWMEA 180
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,212,939
Number of extensions: 1313205
Number of successful extensions: 7032
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6909
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 304
Effective length of database: 14,207,134
Effective search space: 4318968736
Effective search space used: 4318968736
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012672
(1229 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_859880.1| PREDICTED: similar to Non-muscle caldesmon (CDM... 110 4e-24
Alignment gi|XP_849832.1| PREDICTED: similar to Non-muscle caldesmon (CDM... 110 4e-24
>ref|XP_859880.1| PREDICTED: similar to Non-muscle caldesmon (CDM) (L-caldesmon)
isoform 2 [Canis familiaris].
Length = 568
Score = 110 bits (274), Expect = 4e-24
Identities = 72/181 (39%), Positives = 82/181 (45%), Gaps = 2/181 (1%)
Frame = +2
Query: 446 MDDFXXXXXXXXXXXXXXXXXAERIAYQRNDDDXXXXXXXXXXXXXXXXXXXXXXXXSLG 625
MDDF AERIAYQRNDDD SLG
Sbjct: 1 MDDFERRRELRRQKREEMRLEAERIAYQRNDDDEEEAARERRRRARQERLRQKQEEESLG 60
Query: 626 QVTDQVEVNTQNSVPDEQVKTTTTNTQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKE 805
QVTDQVEVN QNSV DE+ K+ T + +E
Sbjct: 61 QVTDQVEVNAQNSVADEEGKSGATPAPVEGDDEAALLERLARREERRQKRLQEALERQRE 120
Query: 806 FDPTIA--DASSSPPSRRMQNSTAEDETAEKDEKSESRQERYEIEETEVVTKSYQKNDWR 979
DPT+ DAS+SP SRR+QN+ A E AEK+EKSE QE Y I +V TK QKND R
Sbjct: 121 LDPTVTVTDASASPASRRLQNNAAPGEAAEKEEKSEPGQEGYAIAGPQVATKPQQKNDCR 180
Query: 980 D 982
D
Sbjct: 181 D 181
>ref|XP_849832.1| PREDICTED: similar to Non-muscle caldesmon (CDM) (L-caldesmon)
isoform 1 [Canis familiaris].
Length = 543
Score = 110 bits (274), Expect = 4e-24
Identities = 72/181 (39%), Positives = 82/181 (45%), Gaps = 2/181 (1%)
Frame = +2
Query: 446 MDDFXXXXXXXXXXXXXXXXXAERIAYQRNDDDXXXXXXXXXXXXXXXXXXXXXXXXSLG 625
MDDF AERIAYQRNDDD SLG
Sbjct: 1 MDDFERRRELRRQKREEMRLEAERIAYQRNDDDEEEAARERRRRARQERLRQKQEEESLG 60
Query: 626 QVTDQVEVNTQNSVPDEQVKTTTTNTQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKE 805
QVTDQVEVN QNSV DE+ K+ T + +E
Sbjct: 61 QVTDQVEVNAQNSVADEEGKSGATPAPVEGDDEAALLERLARREERRQKRLQEALERQRE 120
Query: 806 FDPTIA--DASSSPPSRRMQNSTAEDETAEKDEKSESRQERYEIEETEVVTKSYQKNDWR 979
DPT+ DAS+SP SRR+QN+ A E AEK+EKSE QE Y I +V TK QKND R
Sbjct: 121 LDPTVTVTDASASPASRRLQNNAAPGEAAEKEEKSEPGQEGYAIAGPQVATKPQQKNDCR 180
Query: 980 D 982
D
Sbjct: 181 D 181
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,559,675
Number of extensions: 1247509
Number of successful extensions: 7597
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7270
Number of HSP's successfully gapped: 2
Length of query: 409
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 304
Effective length of database: 15,374,224
Effective search space: 4673764096
Effective search space used: 4673764096
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012672
(1229 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134701.1| PREDICTED: caldesmon [Sus scrofa]. 255 4e-68
>ref|XP_003134701.1| PREDICTED: caldesmon [Sus scrofa].
Length = 871
Score = 255 bits (651), Expect = 4e-68
Identities = 144/238 (60%), Positives = 146/238 (61%)
Frame = +2
Query: 515 RIAYQRNDDDXXXXXXXXXXXXXXXXXXXXXXXXSLGQVTDQVEVNTQNSVPDEQVKTTT 694
+IAYQRNDDD SLGQVTDQVEVNTQNSVPDEQVKTTT
Sbjct: 94 QIAYQRNDDDEEEAARERRRRARQERLRQKQEEESLGQVTDQVEVNTQNSVPDEQVKTTT 153
Query: 695 TNTQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFDPTIADASSSPPSRRMQNSTAE 874
TNTQM KEFDPTIADASSSPPSRRMQNSTAE
Sbjct: 154 TNTQMEADDEAALLERLARREERRQKRLQEALERQKEFDPTIADASSSPPSRRMQNSTAE 213
Query: 875 DETAEKDEKSESRQERYEIEETEVVTKSYQKNDWRDAXXXXXXXXXXXXXXXXXXXXXXX 1054
DETAEKDEKSESRQERYEIEETEVVTKSYQKNDWRDA
Sbjct: 214 DETAEKDEKSESRQERYEIEETEVVTKSYQKNDWRDAEEQKKEEKEKEEEEEEKPNQGSI 273
Query: 1055 XXXXXXXXXXXXXXXTQEETGMALKNGQISADEPRTEEEREKGSHEMPHNEKIEEESR 1228
TQEETGMALKNGQISADEPRTEEEREKGSHEMPHNEKIEEE+R
Sbjct: 274 EENQVEMVVEEKTAETQEETGMALKNGQISADEPRTEEEREKGSHEMPHNEKIEEEAR 331
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,853,650
Number of extensions: 1008717
Number of successful extensions: 4372
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4275
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 308
Effective length of database: 8,829,335
Effective search space: 2719435180
Effective search space used: 2719435180
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012672
(1229 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_663550.1| caldesmon 1 [Mus musculus]. 132 4e-31
>ref|NP_663550.1| caldesmon 1 [Mus musculus].
Length = 530
Score = 132 bits (333), Expect = 4e-31
Identities = 75/157 (47%), Positives = 87/157 (55%)
Frame = +2
Query: 515 RIAYQRNDDDXXXXXXXXXXXXXXXXXXXXXXXXSLGQVTDQVEVNTQNSVPDEQVKTTT 694
+IAYQRNDDD SLGQVTDQVE + QNSVPDE+ K +
Sbjct: 18 QIAYQRNDDDEEEAARERRRRARQERLRQKQEEESLGQVTDQVEAHVQNSVPDEESKPAS 77
Query: 695 TNTQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFDPTIADASSSPPSRRMQNSTAE 874
+NTQ+ KEFDPTI D S S PSRRMQN +AE
Sbjct: 78 SNTQVEGDEEAALLERLARREERRQKRLQEALERQKEFDPTITDGSLSGPSRRMQNDSAE 137
Query: 875 DETAEKDEKSESRQERYEIEETEVVTKSYQKNDWRDA 985
+ETAE +EK ESR RYE+EETEVV KSYQKN ++DA
Sbjct: 138 NETAEGEEKRESRSGRYEVEETEVVIKSYQKNSYQDA 174
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,988,618
Number of extensions: 1018123
Number of successful extensions: 6093
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5875
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 305
Effective length of database: 12,493,815
Effective search space: 3810613575
Effective search space used: 3810613575
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012672
(1229 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_149129.2| caldesmon isoform 1 [Homo sapiens]. 209 4e-54
Alignment gi|NP_149347.2| caldesmon isoform 3 [Homo sapiens]. 170 2e-42
Alignment gi|NP_004333.1| caldesmon isoform 2 [Homo sapiens]. 170 2e-42
Alignment gi|NP_149131.1| caldesmon isoform 5 [Homo sapiens]. 163 3e-40
Alignment gi|NP_149130.1| caldesmon isoform 4 [Homo sapiens]. 163 3e-40
>ref|NP_149129.2| caldesmon isoform 1 [Homo sapiens].
Length = 793
Score = 209 bits (532), Expect = 4e-54
Identities = 125/262 (47%), Positives = 139/262 (53%), Gaps = 1/262 (0%)
Frame = +2
Query: 446 MDDFXXXXXXXXXXXXXXXXXAERIAYQRNDDDXXXXXXXXXXXXXXXXXXXXXXXXSLG 625
MDDF AERIAYQRNDDD SLG
Sbjct: 1 MDDFERRRELRRQKREEMRLEAERIAYQRNDDDEEEAARERRRRARQERLRQKQEEESLG 60
Query: 626 QVTDQVEVNTQNSVPDEQVKTTTTNTQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKE 805
QVTDQVEVN QNSVPDE+ KTTTTNTQ+ KE
Sbjct: 61 QVTDQVEVNAQNSVPDEEAKTTTTNTQVEGDDEAAFLERLARREERRQKRLQEALERQKE 120
Query: 806 FDPTIADASSSPPSRRMQNSTAEDETAEKDEKSESRQERYEIEETEVVTKSYQKNDWRDA 985
FDPTI DAS S PSRRMQN TAE+ET EK+EKSESRQERYEIEETE VTKSYQKNDWRDA
Sbjct: 121 FDPTITDASLSLPSRRMQNDTAENETTEKEEKSESRQERYEIEETETVTKSYQKNDWRDA 180
Query: 986 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQEET-GMALKNGQISADEPRT 1162
+QEET M+LKNGQIS++EP+
Sbjct: 181 EENKKEDKEKEEEEEEKPKRGSIGENQVEVMVEEKTTESQEETVVMSLKNGQISSEEPKQ 240
Query: 1163 EEEREKGSHEMPHNEKIEEESR 1228
EEERE+GS E+ H+EK+EEE +
Sbjct: 241 EEEREQGSDEISHHEKMEEEDK 262
>ref|NP_149347.2| caldesmon isoform 3 [Homo sapiens].
Length = 563
Score = 170 bits (431), Expect = 2e-42
Identities = 97/180 (53%), Positives = 101/180 (56%)
Frame = +2
Query: 446 MDDFXXXXXXXXXXXXXXXXXAERIAYQRNDDDXXXXXXXXXXXXXXXXXXXXXXXXSLG 625
MDDF AERIAYQRNDDD SLG
Sbjct: 1 MDDFERRRELRRQKREEMRLEAERIAYQRNDDDEEEAARERRRRARQERLRQKQEEESLG 60
Query: 626 QVTDQVEVNTQNSVPDEQVKTTTTNTQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKE 805
QVTDQVEVN QNSVPDE+ KTTTTNTQ+ KE
Sbjct: 61 QVTDQVEVNAQNSVPDEEAKTTTTNTQVEGDDEAAFLERLARREERRQKRLQEALERQKE 120
Query: 806 FDPTIADASSSPPSRRMQNSTAEDETAEKDEKSESRQERYEIEETEVVTKSYQKNDWRDA 985
FDPTI DAS S PSRRMQN TAE+ET EK+EKSESRQERYEIEETE VTKSYQKNDWRDA
Sbjct: 121 FDPTITDASLSLPSRRMQNDTAENETTEKEEKSESRQERYEIEETETVTKSYQKNDWRDA 180
>ref|NP_004333.1| caldesmon isoform 2 [Homo sapiens].
Length = 538
Score = 170 bits (431), Expect = 2e-42
Identities = 97/180 (53%), Positives = 101/180 (56%)
Frame = +2
Query: 446 MDDFXXXXXXXXXXXXXXXXXAERIAYQRNDDDXXXXXXXXXXXXXXXXXXXXXXXXSLG 625
MDDF AERIAYQRNDDD SLG
Sbjct: 1 MDDFERRRELRRQKREEMRLEAERIAYQRNDDDEEEAARERRRRARQERLRQKQEEESLG 60
Query: 626 QVTDQVEVNTQNSVPDEQVKTTTTNTQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKE 805
QVTDQVEVN QNSVPDE+ KTTTTNTQ+ KE
Sbjct: 61 QVTDQVEVNAQNSVPDEEAKTTTTNTQVEGDDEAAFLERLARREERRQKRLQEALERQKE 120
Query: 806 FDPTIADASSSPPSRRMQNSTAEDETAEKDEKSESRQERYEIEETEVVTKSYQKNDWRDA 985
FDPTI DAS S PSRRMQN TAE+ET EK+EKSESRQERYEIEETE VTKSYQKNDWRDA
Sbjct: 121 FDPTITDASLSLPSRRMQNDTAENETTEKEEKSESRQERYEIEETETVTKSYQKNDWRDA 180
>ref|NP_149131.1| caldesmon isoform 5 [Homo sapiens].
Length = 532
Score = 163 bits (412), Expect = 3e-40
Identities = 90/157 (57%), Positives = 95/157 (60%)
Frame = +2
Query: 515 RIAYQRNDDDXXXXXXXXXXXXXXXXXXXXXXXXSLGQVTDQVEVNTQNSVPDEQVKTTT 694
+IAYQRNDDD SLGQVTDQVEVN QNSVPDE+ KTTT
Sbjct: 18 QIAYQRNDDDEEEAARERRRRARQERLRQKQEEESLGQVTDQVEVNAQNSVPDEEAKTTT 77
Query: 695 TNTQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFDPTIADASSSPPSRRMQNSTAE 874
TNTQ+ KEFDPTI DAS S PSRRMQN TAE
Sbjct: 78 TNTQVEGDDEAAFLERLARREERRQKRLQEALERQKEFDPTITDASLSLPSRRMQNDTAE 137
Query: 875 DETAEKDEKSESRQERYEIEETEVVTKSYQKNDWRDA 985
+ET EK+EKSESRQERYEIEETE VTKSYQKNDWRDA
Sbjct: 138 NETTEKEEKSESRQERYEIEETETVTKSYQKNDWRDA 174
>ref|NP_149130.1| caldesmon isoform 4 [Homo sapiens].
Length = 558
Score = 163 bits (412), Expect = 3e-40
Identities = 90/157 (57%), Positives = 95/157 (60%)
Frame = +2
Query: 515 RIAYQRNDDDXXXXXXXXXXXXXXXXXXXXXXXXSLGQVTDQVEVNTQNSVPDEQVKTTT 694
+IAYQRNDDD SLGQVTDQVEVN QNSVPDE+ KTTT
Sbjct: 18 QIAYQRNDDDEEEAARERRRRARQERLRQKQEEESLGQVTDQVEVNAQNSVPDEEAKTTT 77
Query: 695 TNTQMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEFDPTIADASSSPPSRRMQNSTAE 874
TNTQ+ KEFDPTI DAS S PSRRMQN TAE
Sbjct: 78 TNTQVEGDDEAAFLERLARREERRQKRLQEALERQKEFDPTITDASLSLPSRRMQNDTAE 137
Query: 875 DETAEKDEKSESRQERYEIEETEVVTKSYQKNDWRDA 985
+ET EK+EKSESRQERYEIEETE VTKSYQKNDWRDA
Sbjct: 138 NETTEKEEKSESRQERYEIEETETVTKSYQKNDWRDA 174
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,628,762
Number of extensions: 1212343
Number of successful extensions: 6800
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6669
Number of HSP's successfully gapped: 5
Length of query: 409
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 304
Effective length of database: 14,835,944
Effective search space: 4510126976
Effective search space used: 4510126976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012672
(1229 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr18 644 0.0
>Sscrofa_Chr18
|| Length = 61220071
Score = 644 bits (325), Expect = 0.0
Identities = 325/325 (100%)
Strand = Plus / Minus
Query: 661 cagtgtgcccgatgagcaggtcaagacaaccaccacgaacactcagatggaggccgatga 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15110469 cagtgtgcccgatgagcaggtcaagacaaccaccacgaacactcagatggaggccgatga 15110410
Query: 721 tgaagctgcactcctggagcgcctggctcggcgggaggaaagacgccaaaaacgccttca 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15110409 tgaagctgcactcctggagcgcctggctcggcgggaggaaagacgccaaaaacgccttca 15110350
Query: 781 ggaagcgctggagcgacagaaggagtttgatccaaccatagcagatgcaagttcgtcgcc 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15110349 ggaagcgctggagcgacagaaggagtttgatccaaccatagcagatgcaagttcgtcgcc 15110290
Query: 841 accaagcagaagaatgcagaatagcacagccgaagatgagacggcggagaaggatgagaa 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15110289 accaagcagaagaatgcagaatagcacagccgaagatgagacggcggagaaggatgagaa 15110230
Query: 901 aagtgaaagtcgccaagaaagatacgagatagaggagacagaagtagtcaccaagtccta 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15110229 aagtgaaagtcgccaagaaagatacgagatagaggagacagaagtagtcaccaagtccta 15110170
Query: 961 ccagaagaatgattggagagatgcc 985
|||||||||||||||||||||||||
Sbjct: 15110169 ccagaagaatgattggagagatgcc 15110145
Score = 626 bits (316), Expect = e-177
Identities = 319/320 (99%)
Strand = Plus / Plus
Query: 1 tttcctgagcatgcctagggaatgacaggcatctcacaggcaggctgcatccacctcggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15374645 tttcctgagcatgcctagggaatgacaggcatctcacaggcaggctgcatccacctcggc 15374704
Query: 61 tggggtgtcgtcattggctgcctattagaaaaactacaggacaatgcataccaccgatgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15374705 tggggtgtcgtcattggctgcctattagaaaaactacaggacaatgcataccaccgatgc 15374764
Query: 121 cgactgtaaacataggggatgtgtgttcacttagcagggacttctgggaggggctaagga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15374765 cgactgtaaacataggggatgtgtgttcacttagcagggacttctgggaggggctaagga 15374824
Query: 181 agggcggtctgtagttttattgaatagagcagtgtgtattaggctgcctgcctgcctgcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15374825 agggcggtctgtagttttattgaatagagcagtgtgtattaggctgcctgcctgcctgcc 15374884
Query: 241 ctcttgctgcgctcctgcttcaagaaatcagtccttcctttccgacttagtccccgggaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15374885 ctcttgctgcgctcctgcttcaagaaatcagtccttcctttccgacttagtccccgggaa 15374944
Query: 301 gaagtttcagcctgcgaggt 320
|||||||||||||| |||||
Sbjct: 15374945 gaagtttcagcctgtgaggt 15374964
Score = 295 bits (149), Expect = 3e-77
Identities = 149/149 (100%)
Strand = Plus / Minus
Query: 515 aggatcgcctaccagaggaacgacgatgatgaggaagaggccgcccgggaacggcgccgc 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15114396 aggatcgcctaccagaggaacgacgatgatgaggaagaggccgcccgggaacggcgccgc 15114337
Query: 575 cgcgcccggcaggaaaggctgcggcagaagcaagaggaagaatccttggggcaggtgacc 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15114336 cgcgcccggcaggaaaggctgcggcagaagcaagaggaagaatccttggggcaggtgacc 15114277
Query: 635 gaccaggtggaggtcaatacccagaacag 663
|||||||||||||||||||||||||||||
Sbjct: 15114276 gaccaggtggaggtcaatacccagaacag 15114248
Score = 228 bits (115), Expect = 6e-57
Identities = 121/123 (98%)
Strand = Plus / Minus
Query: 1100 acccaagaggaaacaggaatggcattgaaaaatgggcaaatcagtgccgatgagcctagg 1159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15110030 acccaagaggaaacaggaatggcattgaaaaatgggcaaatcagtgccgatgagcctagg 15109971
Query: 1160 acagaagaagagagggaaaaaggttcacatgagatgccccataatgaaaagatagaagag 1219
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15109970 acagaggaggagagggaaaaaggttcacatgagatgccccataatgaaaagatagaagag 15109911
Query: 1220 gaa 1222
|||
Sbjct: 15109910 gaa 15109908
Score = 212 bits (107), Expect = 3e-52
Identities = 107/107 (100%)
Strand = Plus / Minus
Query: 411 gcattatctggtctccctaaacctgaacccacaccatggacgattttgaacgtcgcagag 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15171433 gcattatctggtctccctaaacctgaacccacaccatggacgattttgaacgtcgcagag 15171374
Query: 471 aacttaggagacaaaagcgggaggagatgcgcctggaagcagaaagg 517
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15171373 aacttaggagacaaaagcgggaggagatgcgcctggaagcagaaagg 15171327
Score = 188 bits (95), Expect = 5e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 317 aggtgtcattcaaacgtttcaagatcatccacccgaatccataaagattggtgatcaacc 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15194549 aggtgtcattcaaacgtttcaagatcatccacccgaatccataaagattggtgatcaacc 15194490
Query: 377 agaggttcacaagtggacatctgattgcgtacccg 411
|||||||||||||||||||||||||||||||||||
Sbjct: 15194489 agaggttcacaagtggacatctgattgcgtacccg 15194455
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,331,473
Number of extensions: 380
Number of successful extensions: 380
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 380
Number of HSP's successfully gapped: 6
Length of query: 1229
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1208
Effective length of database: 2,808,413,156
Effective search space: 3392563092448
Effective search space used: 3392563092448
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)