Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012675
(1123 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776475.1| alpha-endosulfine [Bos taurus]. 236 3e-62
Alignment gi|NP_001106726.1| cAMP-regulated phosphoprotein 19 isoform 1 [... 168 9e-42
Alignment gi|NP_777130.1| cAMP-regulated phosphoprotein 19 isoform 2 [Bos... 163 3e-40
Alignment gi|XP_002697146.1| PREDICTED: cyclic AMP phosphoprotein, 19 kD-... 157 2e-38
Alignment gi|XP_002702835.1| PREDICTED: cyclic AMP phosphoprotein, 19 kD-... 157 2e-38
Alignment gi|XP_002686125.1| PREDICTED: cyclic AMP phosphoprotein, 19 kD-... 128 8e-30
Alignment gi|XP_001255122.1| PREDICTED: cyclic AMP phosphoprotein, 19 kD ... 128 8e-30
>ref|NP_776475.1| alpha-endosulfine [Bos taurus].
Length = 121
Score = 236 bits (602), Expect = 3e-62
Identities = 118/121 (97%), Positives = 120/121 (99%), Gaps = 1/121 (0%)
Frame = +2
Query: 317 MSQKQEE-NPSEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK 493
MSQKQEE NP+EETGEEKQDTQEKEGILPE+AEEAKLKAKYPSLGQKPGGSDFLMKRLQK
Sbjct: 1 MSQKQEEENPAEETGEEKQDTQEKEGILPEKAEEAKLKAKYPSLGQKPGGSDFLMKRLQK 60
Query: 494 GQKYFDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAGGQV 673
GQKYFDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAGGQV
Sbjct: 61 GQKYFDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAGGQV 120
Query: 674 E 676
E
Sbjct: 121 E 121
>ref|NP_001106726.1| cAMP-regulated phosphoprotein 19 isoform 1 [Bos taurus].
Length = 112
Score = 168 bits (425), Expect = 9e-42
Identities = 84/110 (76%), Positives = 93/110 (84%)
Frame = +2
Query: 335 ENPSEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGQKYFDS 514
E P + EE+++ ++K PE+AEEAKLKA+YP LGQKPGGSDFL KRLQKGQKYFDS
Sbjct: 4 EVPEAASAEEQKEMEDKV-TSPEKAEEAKLKARYPHLGQKPGGSDFLRKRLQKGQKYFDS 62
Query: 515 GDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAG 664
GDYNMAKAKMKNKQLP+A PDK VTGDHIPTPQDLPQRK SLV SKLAG
Sbjct: 63 GDYNMAKAKMKNKQLPTATPDKTEVTGDHIPTPQDLPQRKPSLVASKLAG 112
>ref|NP_777130.1| cAMP-regulated phosphoprotein 19 isoform 2 [Bos taurus].
Length = 96
Score = 163 bits (412), Expect = 3e-40
Identities = 79/89 (88%), Positives = 82/89 (92%)
Frame = +2
Query: 398 PERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGQKYFDSGDYNMAKAKMKNKQLPSAGPD 577
PE+AEEAKLKA+YP LGQKPGGSDFL KRLQKGQKYFDSGDYNMAKAKMKNKQLP+A PD
Sbjct: 8 PEKAEEAKLKARYPHLGQKPGGSDFLRKRLQKGQKYFDSGDYNMAKAKMKNKQLPTATPD 67
Query: 578 KNLVTGDHIPTPQDLPQRKSSLVTSKLAG 664
K VTGDHIPTPQDLPQRK SLV SKLAG
Sbjct: 68 KTEVTGDHIPTPQDLPQRKPSLVASKLAG 96
>ref|XP_002697146.1| PREDICTED: cyclic AMP phosphoprotein, 19 kD-like [Bos taurus].
Length = 112
Score = 157 bits (396), Expect = 2e-38
Identities = 80/110 (72%), Positives = 90/110 (81%)
Frame = +2
Query: 335 ENPSEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGQKYFDS 514
E P + EE+++ ++K PE+A+EAKLKA+YP LGQKPGGSDFL KRLQKGQKYFDS
Sbjct: 4 EVPEAASAEEQKEMEDKV-TNPEKAKEAKLKARYPHLGQKPGGSDFLRKRLQKGQKYFDS 62
Query: 515 GDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAG 664
DYN AKAKMKNKQLP+A DK VTGDHIPTPQDLPQRK SLV SKLAG
Sbjct: 63 WDYNTAKAKMKNKQLPTATLDKTEVTGDHIPTPQDLPQRKPSLVASKLAG 112
>ref|XP_002702835.1| PREDICTED: cyclic AMP phosphoprotein, 19 kD-like [Bos taurus].
Length = 112
Score = 157 bits (396), Expect = 2e-38
Identities = 80/110 (72%), Positives = 90/110 (81%)
Frame = +2
Query: 335 ENPSEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGQKYFDS 514
E P + EE+++ ++K PE+A+EAKLKA+YP LGQKPGGSDFL KRLQKGQKYFDS
Sbjct: 4 EVPEAASAEEQKEMEDKV-TNPEKAKEAKLKARYPHLGQKPGGSDFLRKRLQKGQKYFDS 62
Query: 515 GDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAG 664
DYN AKAKMKNKQLP+A DK VTGDHIPTPQDLPQRK SLV SKLAG
Sbjct: 63 WDYNTAKAKMKNKQLPTATLDKTEVTGDHIPTPQDLPQRKPSLVASKLAG 112
>ref|XP_002686125.1| PREDICTED: cyclic AMP phosphoprotein, 19 kD-like [Bos taurus].
Length = 110
Score = 128 bits (322), Expect = 8e-30
Identities = 69/107 (64%), Positives = 77/107 (71%)
Frame = +2
Query: 344 SEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGQKYFDSGDY 523
SE EKQ E + PE+AE+ KL A+ P LGQKP GSDFL K LQKG+KYF+SGDY
Sbjct: 6 SEAASTEKQKELEDKVTSPEKAEKVKLIARDPHLGQKPRGSDFLRKCLQKGKKYFNSGDY 65
Query: 524 NMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAG 664
NM AKMKNKQLP A PDK +TG+H PTPQDL QRK LV SKL G
Sbjct: 66 NM--AKMKNKQLPIAVPDKTEITGNHKPTPQDLSQRKPCLVASKLTG 110
>ref|XP_001255122.1| PREDICTED: cyclic AMP phosphoprotein, 19 kD [Bos taurus].
Length = 110
Score = 128 bits (322), Expect = 8e-30
Identities = 69/107 (64%), Positives = 77/107 (71%)
Frame = +2
Query: 344 SEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGQKYFDSGDY 523
SE EKQ E + PE+AE+ KL A+ P LGQKP GSDFL K LQKG+KYF+SGDY
Sbjct: 6 SEAASTEKQKELEDKVTSPEKAEKVKLIARDPHLGQKPRGSDFLRKCLQKGKKYFNSGDY 65
Query: 524 NMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAG 664
NM AKMKNKQLP A PDK +TG+H PTPQDL QRK LV SKL G
Sbjct: 66 NM--AKMKNKQLPIAVPDKTEITGNHKPTPQDLSQRKPCLVASKLTG 110
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,771,986
Number of extensions: 1150939
Number of successful extensions: 4604
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 4578
Number of HSP's successfully gapped: 7
Length of query: 374
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 270
Effective length of database: 14,240,222
Effective search space: 3844859940
Effective search space used: 3844859940
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012675
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012675
(1123 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_861102.1| PREDICTED: similar to Alpha-endosulfine isoform... 237 1e-62
Alignment gi|XP_860994.1| PREDICTED: similar to Alpha-endosulfine isoform... 237 1e-62
Alignment gi|XP_533046.1| PREDICTED: similar to Alpha-endosulfine isoform... 229 3e-60
Alignment gi|XP_861020.1| PREDICTED: similar to endosulfine alpha isoform... 219 3e-57
Alignment gi|XP_850208.1| PREDICTED: similar to endosulfine alpha isoform... 213 2e-55
Alignment gi|XP_861047.1| PREDICTED: similar to endosulfine alpha isoform... 208 7e-54
Alignment gi|XP_861075.1| PREDICTED: similar to endosulfine alpha isoform... 201 1e-51
Alignment gi|XP_544681.2| PREDICTED: similar to cAMP-regulated phosphopro... 169 6e-42
>ref|XP_861102.1| PREDICTED: similar to Alpha-endosulfine isoform 7 [Canis
familiaris].
Length = 121
Score = 237 bits (605), Expect = 1e-62
Identities = 119/121 (98%), Positives = 120/121 (99%), Gaps = 1/121 (0%)
Frame = +2
Query: 317 MSQKQEE-NPSEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK 493
MSQKQEE NP+EETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK
Sbjct: 1 MSQKQEEENPAEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK 60
Query: 494 GQKYFDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAGGQV 673
GQKYFDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAGGQV
Sbjct: 61 GQKYFDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAGGQV 120
Query: 674 E 676
E
Sbjct: 121 E 121
>ref|XP_860994.1| PREDICTED: similar to Alpha-endosulfine isoform 3 [Canis
familiaris].
Length = 121
Score = 237 bits (605), Expect = 1e-62
Identities = 119/121 (98%), Positives = 120/121 (99%), Gaps = 1/121 (0%)
Frame = +2
Query: 317 MSQKQEE-NPSEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK 493
MSQKQEE NP+EETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK
Sbjct: 1 MSQKQEEENPAEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK 60
Query: 494 GQKYFDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAGGQV 673
GQKYFDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAGGQV
Sbjct: 61 GQKYFDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAGGQV 120
Query: 674 E 676
E
Sbjct: 121 E 121
>ref|XP_533046.1| PREDICTED: similar to Alpha-endosulfine isoform 1 [Canis
familiaris].
Length = 117
Score = 229 bits (585), Expect = 3e-60
Identities = 115/117 (98%), Positives = 116/117 (99%), Gaps = 1/117 (0%)
Frame = +2
Query: 317 MSQKQEE-NPSEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK 493
MSQKQEE NP+EETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK
Sbjct: 1 MSQKQEEENPAEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK 60
Query: 494 GQKYFDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAG 664
GQKYFDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAG
Sbjct: 61 GQKYFDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAG 117
>ref|XP_861020.1| PREDICTED: similar to endosulfine alpha isoform 1 isoform 4 [Canis
familiaris].
Length = 132
Score = 219 bits (559), Expect = 3e-57
Identities = 115/132 (87%), Positives = 116/132 (87%), Gaps = 16/132 (12%)
Frame = +2
Query: 317 MSQKQEE-NPSEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK 493
MSQKQEE NP+EETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK
Sbjct: 1 MSQKQEEENPAEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK 60
Query: 494 G---------------QKYFDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQ 628
G QKYFDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQ
Sbjct: 61 GVWDKISYLLTLKSKGQKYFDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQ 120
Query: 629 RKSSLVTSKLAG 664
RKSSLVTSKLAG
Sbjct: 121 RKSSLVTSKLAG 132
>ref|XP_850208.1| PREDICTED: similar to endosulfine alpha isoform 1 isoform 2 [Canis
familiaris].
Length = 148
Score = 213 bits (543), Expect = 2e-55
Identities = 115/148 (77%), Positives = 116/148 (78%), Gaps = 32/148 (21%)
Frame = +2
Query: 317 MSQKQEE-NPSEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK 493
MSQKQEE NP+EETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK
Sbjct: 1 MSQKQEEENPAEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK 60
Query: 494 G-------------------------------QKYFDSGDYNMAKAKMKNKQLPSAGPDK 580
G QKYFDSGDYNMAKAKMKNKQLPSAGPDK
Sbjct: 61 GVWDKISYLLTLKSKGALGMRSVELLLNTYLEQKYFDSGDYNMAKAKMKNKQLPSAGPDK 120
Query: 581 NLVTGDHIPTPQDLPQRKSSLVTSKLAG 664
NLVTGDHIPTPQDLPQRKSSLVTSKLAG
Sbjct: 121 NLVTGDHIPTPQDLPQRKSSLVTSKLAG 148
>ref|XP_861047.1| PREDICTED: similar to endosulfine alpha isoform 6 isoform 5 [Canis
familiaris].
Length = 104
Score = 208 bits (530), Expect = 7e-54
Identities = 102/103 (99%), Positives = 103/103 (100%)
Frame = +2
Query: 368 QDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGQKYFDSGDYNMAKAKMK 547
+DTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGQKYFDSGDYNMAKAKMK
Sbjct: 2 EDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGQKYFDSGDYNMAKAKMK 61
Query: 548 NKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAGGQVE 676
NKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAGGQVE
Sbjct: 62 NKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAGGQVE 104
>ref|XP_861075.1| PREDICTED: similar to endosulfine alpha isoform 6 isoform 6 [Canis
familiaris].
Length = 100
Score = 201 bits (510), Expect = 1e-51
Identities = 98/99 (98%), Positives = 99/99 (100%)
Frame = +2
Query: 368 QDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGQKYFDSGDYNMAKAKMK 547
+DTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGQKYFDSGDYNMAKAKMK
Sbjct: 2 EDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGQKYFDSGDYNMAKAKMK 61
Query: 548 NKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAG 664
NKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAG
Sbjct: 62 NKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAG 100
>ref|XP_544681.2| PREDICTED: similar to cAMP-regulated phosphoprotein 19 (ARPP-19)
[Canis familiaris].
Length = 112
Score = 169 bits (427), Expect = 6e-42
Identities = 84/110 (76%), Positives = 93/110 (84%)
Frame = +2
Query: 335 ENPSEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGQKYFDS 514
E P + EE+++ ++K PE+AEEAKLKA+YP LGQKPGGSDFL KRLQKGQKYFDS
Sbjct: 4 EVPEAASAEEQKEMEDKV-TSPEKAEEAKLKARYPHLGQKPGGSDFLRKRLQKGQKYFDS 62
Query: 515 GDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAG 664
GDYNMAKAKMKNKQLP+A PDK VTGDHIPTPQDLPQRK SLV SKLAG
Sbjct: 63 GDYNMAKAKMKNKQLPTAAPDKTEVTGDHIPTPQDLPQRKPSLVASKLAG 112
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,838,841
Number of extensions: 1053317
Number of successful extensions: 4932
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 4871
Number of HSP's successfully gapped: 8
Length of query: 374
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 270
Effective length of database: 15,407,560
Effective search space: 4160041200
Effective search space used: 4160041200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012675
(1123 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999339.1| alpha-endosulfine [Sus scrofa]. 236 2e-62
Alignment gi|NP_999340.1| cAMP-regulated phosphoprotein 19 [Sus scrofa]. 169 3e-42
Alignment gi|XP_003353404.1| PREDICTED: cAMP-regulated phosphoprotein 19-... 164 1e-40
>ref|NP_999339.1| alpha-endosulfine [Sus scrofa].
Length = 121
Score = 236 bits (602), Expect = 2e-62
Identities = 118/121 (97%), Positives = 120/121 (99%), Gaps = 1/121 (0%)
Frame = +2
Query: 317 MSQKQEE-NPSEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK 493
MSQKQEE NP+EETGEEKQDTQEKEGILPE+AEEAKLKAKYPSLGQKPGGSDFLMKRLQK
Sbjct: 1 MSQKQEEENPAEETGEEKQDTQEKEGILPEKAEEAKLKAKYPSLGQKPGGSDFLMKRLQK 60
Query: 494 GQKYFDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAGGQV 673
GQKYFDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAGGQV
Sbjct: 61 GQKYFDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAGGQV 120
Query: 674 E 676
E
Sbjct: 121 E 121
>ref|NP_999340.1| cAMP-regulated phosphoprotein 19 [Sus scrofa].
Length = 112
Score = 169 bits (427), Expect = 3e-42
Identities = 84/110 (76%), Positives = 93/110 (84%)
Frame = +2
Query: 335 ENPSEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGQKYFDS 514
E P + EE+++ ++K PE+AEEAKLKA+YP LGQKPGGSDFL KRLQKGQKYFDS
Sbjct: 4 EVPEAASAEEQKEMEDKV-TSPEKAEEAKLKARYPHLGQKPGGSDFLRKRLQKGQKYFDS 62
Query: 515 GDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAG 664
GDYNMAKAKMKNKQLP+A PDK VTGDHIPTPQDLPQRK SLV SKLAG
Sbjct: 63 GDYNMAKAKMKNKQLPTAAPDKTEVTGDHIPTPQDLPQRKPSLVASKLAG 112
>ref|XP_003353404.1| PREDICTED: cAMP-regulated phosphoprotein 19-like [Sus scrofa].
Length = 96
Score = 164 bits (414), Expect = 1e-40
Identities = 79/89 (88%), Positives = 82/89 (92%)
Frame = +2
Query: 398 PERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGQKYFDSGDYNMAKAKMKNKQLPSAGPD 577
PE+AEEAKLKA+YP LGQKPGGSDFL KRLQKGQKYFDSGDYNMAKAKMKNKQLP+A PD
Sbjct: 8 PEKAEEAKLKARYPHLGQKPGGSDFLRKRLQKGQKYFDSGDYNMAKAKMKNKQLPTAAPD 67
Query: 578 KNLVTGDHIPTPQDLPQRKSSLVTSKLAG 664
K VTGDHIPTPQDLPQRK SLV SKLAG
Sbjct: 68 KTEVTGDHIPTPQDLPQRKPSLVASKLAG 96
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,642,907
Number of extensions: 944324
Number of successful extensions: 3074
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3056
Number of HSP's successfully gapped: 3
Length of query: 374
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 274
Effective length of database: 8,854,232
Effective search space: 2426059568
Effective search space used: 2426059568
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012675
(1123 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_062507.1| alpha-endosulfine isoform a [Mus musculus]. 233 2e-61
Alignment gi|NP_001021383.1| alpha-endosulfine isoform b [Mus musculus]. 225 4e-59
Alignment gi|NP_001136127.1| cAMP-regulated phosphoprotein 19 isoform 2 [... 170 2e-42
Alignment gi|NP_067523.1| cAMP-regulated phosphoprotein 19 isoform 1 [Mus... 169 5e-42
>ref|NP_062507.1| alpha-endosulfine isoform a [Mus musculus].
Length = 121
Score = 233 bits (594), Expect = 2e-61
Identities = 117/121 (96%), Positives = 119/121 (98%), Gaps = 1/121 (0%)
Frame = +2
Query: 317 MSQKQEE-NPSEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK 493
MSQKQEE NP+EETGEEKQDTQEKEGILPE+AEEAKLKAKYPSLGQKPGGSDFLMKRLQK
Sbjct: 1 MSQKQEEENPAEETGEEKQDTQEKEGILPEKAEEAKLKAKYPSLGQKPGGSDFLMKRLQK 60
Query: 494 GQKYFDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAGGQV 673
GQKYFDSGDYNMAKAKMKNKQLPSAG DKNLVTGDHIPTPQDLPQRKSSLVTSKLAGGQV
Sbjct: 61 GQKYFDSGDYNMAKAKMKNKQLPSAGADKNLVTGDHIPTPQDLPQRKSSLVTSKLAGGQV 120
Query: 674 E 676
E
Sbjct: 121 E 121
>ref|NP_001021383.1| alpha-endosulfine isoform b [Mus musculus].
Length = 117
Score = 225 bits (574), Expect = 4e-59
Identities = 113/117 (96%), Positives = 115/117 (98%), Gaps = 1/117 (0%)
Frame = +2
Query: 317 MSQKQEE-NPSEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK 493
MSQKQEE NP+EETGEEKQDTQEKEGILPE+AEEAKLKAKYPSLGQKPGGSDFLMKRLQK
Sbjct: 1 MSQKQEEENPAEETGEEKQDTQEKEGILPEKAEEAKLKAKYPSLGQKPGGSDFLMKRLQK 60
Query: 494 GQKYFDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAG 664
GQKYFDSGDYNMAKAKMKNKQLPSAG DKNLVTGDHIPTPQDLPQRKSSLVTSKLAG
Sbjct: 61 GQKYFDSGDYNMAKAKMKNKQLPSAGADKNLVTGDHIPTPQDLPQRKSSLVTSKLAG 117
>ref|NP_001136127.1| cAMP-regulated phosphoprotein 19 isoform 2 [Mus musculus].
Length = 145
Score = 170 bits (431), Expect = 2e-42
Identities = 86/119 (72%), Positives = 95/119 (79%)
Frame = +2
Query: 308 GPAMSQKQEENPSEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRL 487
G S E P + EE+++ ++K PE+AEEAKLKA+YP LGQKPGGSDFL KRL
Sbjct: 28 GDRRSTMSAEVPEAASAEEQKEMEDKV-TSPEKAEEAKLKARYPHLGQKPGGSDFLRKRL 86
Query: 488 QKGQKYFDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAG 664
QKGQKYFDSGDYNMAKAKMKNKQLP+A PDK VTGDHIPTPQDLPQRK SLV SKLAG
Sbjct: 87 QKGQKYFDSGDYNMAKAKMKNKQLPAAAPDKTEVTGDHIPTPQDLPQRKPSLVASKLAG 145
>ref|NP_067523.1| cAMP-regulated phosphoprotein 19 isoform 1 [Mus musculus].
Length = 112
Score = 169 bits (427), Expect = 5e-42
Identities = 84/110 (76%), Positives = 93/110 (84%)
Frame = +2
Query: 335 ENPSEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGQKYFDS 514
E P + EE+++ ++K PE+AEEAKLKA+YP LGQKPGGSDFL KRLQKGQKYFDS
Sbjct: 4 EVPEAASAEEQKEMEDKV-TSPEKAEEAKLKARYPHLGQKPGGSDFLRKRLQKGQKYFDS 62
Query: 515 GDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAG 664
GDYNMAKAKMKNKQLP+A PDK VTGDHIPTPQDLPQRK SLV SKLAG
Sbjct: 63 GDYNMAKAKMKNKQLPAAAPDKTEVTGDHIPTPQDLPQRKPSLVASKLAG 112
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,825,316
Number of extensions: 845384
Number of successful extensions: 4264
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4197
Number of HSP's successfully gapped: 4
Length of query: 374
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 271
Effective length of database: 12,523,851
Effective search space: 3393963621
Effective search space used: 3393963621
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012675
(1123 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004427.1| alpha-endosulfine isoform 3 [Homo sapiens]. 237 1e-62
Alignment gi|NP_996927.1| alpha-endosulfine isoform 4 [Homo sapiens]. 229 3e-60
Alignment gi|NP_996925.1| alpha-endosulfine isoform 1 [Homo sapiens]. 227 2e-59
Alignment gi|NP_996926.1| alpha-endosulfine isoform 2 [Homo sapiens]. 219 4e-57
Alignment gi|NP_996929.1| alpha-endosulfine isoform 6 [Homo sapiens]. 208 6e-54
Alignment gi|NP_996930.1| alpha-endosulfine isoform 7 [Homo sapiens]. 201 1e-51
Alignment gi|NP_996928.1| alpha-endosulfine isoform 5 [Homo sapiens]. 198 9e-51
Alignment gi|NP_006619.1| cAMP-regulated phosphoprotein 19 [Homo sapiens]. 169 6e-42
Alignment gi|NP_997051.1| alpha-endosulfine isoform 8 [Homo sapiens]. 117 3e-26
>ref|NP_004427.1| alpha-endosulfine isoform 3 [Homo sapiens].
Length = 121
Score = 237 bits (605), Expect = 1e-62
Identities = 119/121 (98%), Positives = 120/121 (99%), Gaps = 1/121 (0%)
Frame = +2
Query: 317 MSQKQEE-NPSEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK 493
MSQKQEE NP+EETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK
Sbjct: 1 MSQKQEEENPAEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK 60
Query: 494 GQKYFDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAGGQV 673
GQKYFDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAGGQV
Sbjct: 61 GQKYFDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAGGQV 120
Query: 674 E 676
E
Sbjct: 121 E 121
>ref|NP_996927.1| alpha-endosulfine isoform 4 [Homo sapiens].
Length = 117
Score = 229 bits (585), Expect = 3e-60
Identities = 115/117 (98%), Positives = 116/117 (99%), Gaps = 1/117 (0%)
Frame = +2
Query: 317 MSQKQEE-NPSEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK 493
MSQKQEE NP+EETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK
Sbjct: 1 MSQKQEEENPAEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK 60
Query: 494 GQKYFDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAG 664
GQKYFDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAG
Sbjct: 61 GQKYFDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAG 117
>ref|NP_996925.1| alpha-endosulfine isoform 1 [Homo sapiens].
Length = 137
Score = 227 bits (578), Expect = 2e-59
Identities = 119/137 (86%), Positives = 120/137 (87%), Gaps = 17/137 (12%)
Frame = +2
Query: 317 MSQKQEE-NPSEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK 493
MSQKQEE NP+EETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK
Sbjct: 1 MSQKQEEENPAEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK 60
Query: 494 G----------------QKYFDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLP 625
G QKYFDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLP
Sbjct: 61 GDYKSLHWSVLLCADEMQKYFDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLP 120
Query: 626 QRKSSLVTSKLAGGQVE 676
QRKSSLVTSKLAGGQVE
Sbjct: 121 QRKSSLVTSKLAGGQVE 137
>ref|NP_996926.1| alpha-endosulfine isoform 2 [Homo sapiens].
Length = 133
Score = 219 bits (558), Expect = 4e-57
Identities = 115/133 (86%), Positives = 116/133 (87%), Gaps = 17/133 (12%)
Frame = +2
Query: 317 MSQKQEE-NPSEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK 493
MSQKQEE NP+EETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK
Sbjct: 1 MSQKQEEENPAEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK 60
Query: 494 G----------------QKYFDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLP 625
G QKYFDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLP
Sbjct: 61 GDYKSLHWSVLLCADEMQKYFDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLP 120
Query: 626 QRKSSLVTSKLAG 664
QRKSSLVTSKLAG
Sbjct: 121 QRKSSLVTSKLAG 133
>ref|NP_996929.1| alpha-endosulfine isoform 6 [Homo sapiens].
Length = 117
Score = 208 bits (530), Expect = 6e-54
Identities = 102/103 (99%), Positives = 103/103 (100%)
Frame = +2
Query: 368 QDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGQKYFDSGDYNMAKAKMK 547
+DTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGQKYFDSGDYNMAKAKMK
Sbjct: 15 EDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGQKYFDSGDYNMAKAKMK 74
Query: 548 NKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAGGQVE 676
NKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAGGQVE
Sbjct: 75 NKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAGGQVE 117
>ref|NP_996930.1| alpha-endosulfine isoform 7 [Homo sapiens].
Length = 113
Score = 201 bits (510), Expect = 1e-51
Identities = 98/99 (98%), Positives = 99/99 (100%)
Frame = +2
Query: 368 QDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGQKYFDSGDYNMAKAKMK 547
+DTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGQKYFDSGDYNMAKAKMK
Sbjct: 15 EDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGQKYFDSGDYNMAKAKMK 74
Query: 548 NKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAG 664
NKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAG
Sbjct: 75 NKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAG 113
>ref|NP_996928.1| alpha-endosulfine isoform 5 [Homo sapiens].
Length = 133
Score = 198 bits (503), Expect = 9e-51
Identities = 102/119 (85%), Positives = 103/119 (86%), Gaps = 16/119 (13%)
Frame = +2
Query: 368 QDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKG----------------Q 499
+DTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKG Q
Sbjct: 15 EDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGDYKSLHWSVLLCADEMQ 74
Query: 500 KYFDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAGGQVE 676
KYFDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAGGQVE
Sbjct: 75 KYFDSGDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAGGQVE 133
>ref|NP_006619.1| cAMP-regulated phosphoprotein 19 [Homo sapiens].
Length = 112
Score = 169 bits (427), Expect = 6e-42
Identities = 84/110 (76%), Positives = 93/110 (84%)
Frame = +2
Query: 335 ENPSEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGQKYFDS 514
E P + EE+++ ++K PE+AEEAKLKA+YP LGQKPGGSDFL KRLQKGQKYFDS
Sbjct: 4 EVPEAASAEEQKEMEDKV-TSPEKAEEAKLKARYPHLGQKPGGSDFLRKRLQKGQKYFDS 62
Query: 515 GDYNMAKAKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAG 664
GDYNMAKAKMKNKQLP+A PDK VTGDHIPTPQDLPQRK SLV SKLAG
Sbjct: 63 GDYNMAKAKMKNKQLPTAAPDKTEVTGDHIPTPQDLPQRKPSLVASKLAG 112
>ref|NP_997051.1| alpha-endosulfine isoform 8 [Homo sapiens].
Length = 105
Score = 117 bits (292), Expect = 3e-26
Identities = 59/61 (96%), Positives = 60/61 (98%), Gaps = 1/61 (1%)
Frame = +2
Query: 317 MSQKQEE-NPSEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK 493
MSQKQEE NP+EETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK
Sbjct: 1 MSQKQEEENPAEETGEEKQDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQK 60
Query: 494 G 496
G
Sbjct: 61 G 61
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,919,673
Number of extensions: 1019228
Number of successful extensions: 4749
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 4701
Number of HSP's successfully gapped: 9
Length of query: 374
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 270
Effective length of database: 14,868,908
Effective search space: 4014605160
Effective search space used: 4014605160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012675
(1123 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 472 e-130
>Sscrofa_Chr04
|| Length = 143465943
Score = 472 bits (238), Expect = e-130
Identities = 254/262 (96%)
Strand = Plus / Plus
Query: 663 gtggccaagttgaatgatgctgcccggggctccgccagatcctgagacgctgcccccctg 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107782837 gtggccaagttgaatgatgctgcccggggctccgccagatcctgagacgctgcccccctg 107782896
Query: 723 ggtcctgtgctggctcctgcccctccctgcttttgcagccaggggtcaggaggtggctcg 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107782897 ggtcctgtgctggctcctgcccctccctgcttttgcagccaggggtcaggaggtggctcg 107782956
Query: 783 ggtgcgggctggagaggcagaagcccctgcccgtcggtgtcccagcgcatggagcccctt 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107782957 ggtgcgggctggagaggcagaagcccctgcccgtcggtgtcccagcgcatggagcccctt 107783016
Query: 843 gggctgagcaccaagaccttgaaccttttttgtttctccnnnnnnnnccaaataattgtt 902
||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 107783017 gggctgagcaccaagaccttgaaccttttttgtttctccttttttttccaaataattgtt 107783076
Query: 903 gggagaaatttcagtgaaatct 924
||||||||||||||||||||||
Sbjct: 107783077 gggagaaatttcagtgaaatct 107783098
Score = 333 bits (168), Expect = 1e-88
Identities = 168/168 (100%)
Strand = Plus / Plus
Query: 496 gcaaaagtactttgactcaggagactacaacatggccaaagccaagatgaagaataagca 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107779319 gcaaaagtactttgactcaggagactacaacatggccaaagccaagatgaagaataagca 107779378
Query: 556 gctgccaagtgcaggaccagacaagaacctggtgactggtgaccacatccccaccccaca 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107779379 gctgccaagtgcaggaccagacaagaacctggtgactggtgaccacatccccaccccaca 107779438
Query: 616 ggatctgccccagagaaagtcctcgctcgtcaccagcaagcttgcggg 663
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107779439 ggatctgccccagagaaagtcctcgctcgtcaccagcaagcttgcggg 107779486
Score = 256 bits (129), Expect = 2e-65
Identities = 129/129 (100%)
Strand = Plus / Plus
Query: 368 caggacacgcaggagaaagaaggtattctccctgagagagccgaggaggcaaagctaaag 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107777801 caggacacgcaggagaaagaaggtattctccctgagagagccgaggaggcaaagctaaag 107777860
Query: 428 gccaaatatccaagcctaggacaaaagcctggaggctccgacttcctcatgaagaggctc 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107777861 gccaaatatccaagcctaggacaaaagcctggaggctccgacttcctcatgaagaggctc 107777920
Query: 488 cagaaaggg 496
|||||||||
Sbjct: 107777921 cagaaaggg 107777929
Score = 252 bits (127), Expect = 4e-64
Identities = 149/155 (96%), Gaps = 1/155 (0%)
Strand = Plus / Plus
Query: 970 aatatgaattagggcttggagctgataaaaaggcattcctgactatcctccttcttaacc 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107783144 aatatgaattagggcttggagctgataaaaaggcattcctgactatcctccttcttaacc 107783203
Query: 1030 aagtgactggtgtggggtggttaggagggggaagaaatgaaatggaccaaggatgggttc 1089
|||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||
Sbjct: 107783204 aagtgactggtgtggggtggttaggagggggaggaagtgaaatggacgaaggatgggttc 107783263
Query: 1090 tggttcaactctgtggaag-atgccctgtttgctt 1123
||||||| ||||||||||| ||||| |||||||||
Sbjct: 107783264 tggttcagctctgtggaagaatgccttgtttgctt 107783298
Score = 190 bits (96), Expect = 1e-45
Identities = 102/104 (98%)
Strand = Plus / Plus
Query: 268 ctccagttgacttcccgggtcccctacactccacagtcccggccccgccatgtcccagaa 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107776024 ctccagttgacttcccgggtcccctacactccacagtcccggccccgccatgtcccagaa 107776083
Query: 328 acaagaagagaacccttcggaggagaccggcgaggagaagcagg 371
|||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 107776084 gcaagaatagaacccttcggaggagaccggcgaggagaagcagg 107776127
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,223,187
Number of extensions: 312
Number of successful extensions: 312
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 312
Number of HSP's successfully gapped: 6
Length of query: 1123
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1102
Effective length of database: 2,808,413,156
Effective search space: 3094871297912
Effective search space used: 3094871297912
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)