Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012685
(1011 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001015589.1| seipin [Bos taurus]. 369 e-102
>ref|NP_001015589.1| seipin [Bos taurus].
Length = 394
Score = 369 bits (946), Expect = e-102
Identities = 184/204 (90%), Positives = 189/204 (92%)
Frame = +2
Query: 371 MVNDPPVPALLWAQEMGHVLAGRARKLLLQFGVLFCTILLLLWVSVFLYGSFYYSYMPTV 550
MVNDPPVPALLWAQEMGHV+AGRARKLLLQFGV FCTILLLLWVSVFLYGSFYYSYMPTV
Sbjct: 1 MVNDPPVPALLWAQEMGHVMAGRARKLLLQFGVFFCTILLLLWVSVFLYGSFYYSYMPTV 60
Query: 551 SHLSPVHFYYRTXXXXXXXXXXXFPVANVSLAKGGRDRVLMYGQPYRVTLELELPESRVN 730
SHLSPVHF+YRT FPVANV+LAKGGRDRVLMYGQPYRVTLELELPES VN
Sbjct: 61 SHLSPVHFHYRTDCESSTSLLCSFPVANVTLAKGGRDRVLMYGQPYRVTLELELPESPVN 120
Query: 731 QDLGMFLVTISCYTRGGRIISTSFRSVMLHYRSDLLQMLDTLVFSSLLLFGFAEQKQILE 910
QDLGMFLVTISCYTRGGRIISTS RSVMLHYRS LLQMLDTLVFSSLLLFGFAEQKQ+LE
Sbjct: 121 QDLGMFLVTISCYTRGGRIISTSSRSVMLHYRSSLLQMLDTLVFSSLLLFGFAEQKQLLE 180
Query: 911 VELYPEYRKNSYVPTTGAIIEIHS 982
VELYPEYR+NSYVPTTGAIIEIHS
Sbjct: 181 VELYPEYRENSYVPTTGAIIEIHS 204
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,198,816
Number of extensions: 1059972
Number of successful extensions: 6613
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6511
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 234
Effective length of database: 14,273,310
Effective search space: 3339954540
Effective search space used: 3339954540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-012685
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012685
(1011 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_853538.1| PREDICTED: similar to seipin isoform 2 [Canis f... 458 e-129
Alignment gi|XP_533262.1| PREDICTED: similar to Bernardinelli-Seip congen... 177 1e-44
>ref|XP_853538.1| PREDICTED: similar to seipin isoform 2 [Canis familiaris].
Length = 456
Score = 458 bits (1179), Expect = e-129
Identities = 230/263 (87%), Positives = 236/263 (89%)
Frame = +2
Query: 194 DQKEGEAKEKEVCRDQIKESDKEEEPPAAASHGQGWRPGGRAPRNSRPEPGVRPPALPNM 373
+Q GEA KE CR QIKESDKEEEPPAA+ HGQ WRPGGRA RNSRPEPG R ALP M
Sbjct: 4 EQGGGEAGGKEPCRYQIKESDKEEEPPAASPHGQAWRPGGRAARNSRPEPGARHSALPAM 63
Query: 374 VNDPPVPALLWAQEMGHVLAGRARKLLLQFGVLFCTILLLLWVSVFLYGSFYYSYMPTVS 553
VNDPPVPALLWAQE+GH+LAGRARKLLLQFGVLFCTILLLLWVSVFLYGSFYYSYMPTVS
Sbjct: 64 VNDPPVPALLWAQEVGHILAGRARKLLLQFGVLFCTILLLLWVSVFLYGSFYYSYMPTVS 123
Query: 554 HLSPVHFYYRTXXXXXXXXXXXFPVANVSLAKGGRDRVLMYGQPYRVTLELELPESRVNQ 733
HLSPVHFYYRT FPVANVSLAKGGRDRVLMYGQPYRVTLELELPES VNQ
Sbjct: 124 HLSPVHFYYRTDCDSSTSLLCSFPVANVSLAKGGRDRVLMYGQPYRVTLELELPESPVNQ 183
Query: 734 DLGMFLVTISCYTRGGRIISTSFRSVMLHYRSDLLQMLDTLVFSSLLLFGFAEQKQILEV 913
DLGMFLVTISCYTRGGRIISTS RSVMLHYRSDLLQMLDTLVFSSLLLFGFAEQKQ+LEV
Sbjct: 184 DLGMFLVTISCYTRGGRIISTSSRSVMLHYRSDLLQMLDTLVFSSLLLFGFAEQKQLLEV 243
Query: 914 ELYPEYRKNSYVPTTGAIIEIHS 982
ELY EYR+NSYVPTTGAIIEIHS
Sbjct: 244 ELYSEYRENSYVPTTGAIIEIHS 266
>ref|XP_533262.1| PREDICTED: similar to Bernardinelli-Seip congenital lipodystrophy 2
homolog (predicted) isoform 1 [Canis familiaris].
Length = 165
Score = 177 bits (450), Expect = 1e-44
Identities = 86/101 (85%), Positives = 89/101 (88%)
Frame = +2
Query: 371 MVNDPPVPALLWAQEMGHVLAGRARKLLLQFGVLFCTILLLLWVSVFLYGSFYYSYMPTV 550
MVNDPPVPALLWAQE+GH+LAGRARKLLLQFGVLFCTILLLLWVSVFLYGSFYYSYMPTV
Sbjct: 1 MVNDPPVPALLWAQEVGHILAGRARKLLLQFGVLFCTILLLLWVSVFLYGSFYYSYMPTV 60
Query: 551 SHLSPVHFYYRTXXXXXXXXXXXFPVANVSLAKGGRDRVLM 673
SHLSPVHFYYRT FPVANVSLAKGGRDR L+
Sbjct: 61 SHLSPVHFYYRTDCDSSTSLLCSFPVANVSLAKGGRDRRLL 101
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,010,042
Number of extensions: 1099354
Number of successful extensions: 7221
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7093
Number of HSP's successfully gapped: 2
Length of query: 337
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 234
Effective length of database: 15,440,896
Effective search space: 3613169664
Effective search space used: 3613169664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012685
(1011 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001121931.1| seipin [Sus scrofa]. 515 e-146
>ref|NP_001121931.1| seipin [Sus scrofa].
Length = 465
Score = 515 bits (1327), Expect = e-146
Identities = 256/269 (95%), Positives = 257/269 (95%)
Frame = +2
Query: 176 MSKEMADQKEGEAKEKEVCRDQIKESDKEEEPPAAASHGQGWRPGGRAPRNSRPEPGVRP 355
MSKEMADQKEGEAKEKEVCRDQIKESDKEEEPPAAASHGQGWRPGGRAPRNSRPEPGVRP
Sbjct: 1 MSKEMADQKEGEAKEKEVCRDQIKESDKEEEPPAAASHGQGWRPGGRAPRNSRPEPGVRP 60
Query: 356 PALPNMVNDPPVPALLWAQEMGHVLAGRARKLLLQFGVLFCTILLLLWVSVFLYGSFYYS 535
PALPNMVNDPPVPALLWAQEMGHVLAGRARKLLLQFGVLFCTILLLLWVSVFLYGSFYYS
Sbjct: 61 PALPNMVNDPPVPALLWAQEMGHVLAGRARKLLLQFGVLFCTILLLLWVSVFLYGSFYYS 120
Query: 536 YMPTVSHLSPVHFYYRTXXXXXXXXXXXFPVANVSLAKGGRDRVLMYGQPYRVTLELELP 715
YMPTVSHLSPVHFYYRT FPVANVSLAKGGRDRVLMYGQPYRVTLELELP
Sbjct: 121 YMPTVSHLSPVHFYYRTDCDSSSSLLCSFPVANVSLAKGGRDRVLMYGQPYRVTLELELP 180
Query: 716 ESRVNQDLGMFLVTISCYTRGGRIISTSFRSVMLHYRSDLLQMLDTLVFSSLLLFGFAEQ 895
ESRVNQDLGMFLVTISCYTRGGRIISTS RSVMLHYRSDLLQMLDTLVFSSLLLFGFAEQ
Sbjct: 181 ESRVNQDLGMFLVTISCYTRGGRIISTSSRSVMLHYRSDLLQMLDTLVFSSLLLFGFAEQ 240
Query: 896 KQILEVELYPEYRKNSYVPTTGAIIEIHS 982
KQILEVELYPEYR+NSYVPTTGAIIEIHS
Sbjct: 241 KQILEVELYPEYRENSYVPTTGAIIEIHS 269
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,341,887
Number of extensions: 685401
Number of successful extensions: 4446
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4334
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 237
Effective length of database: 8,854,232
Effective search space: 2098452984
Effective search space used: 2098452984
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012685
(1011 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032170.3| seipin [Mus musculus]. 434 e-122
Alignment gi|NP_001129536.1| seipin [Mus musculus]. 434 e-122
>ref|NP_032170.3| seipin [Mus musculus].
Length = 443
Score = 434 bits (1117), Expect = e-122
Identities = 215/258 (83%), Positives = 230/258 (89%)
Frame = +2
Query: 209 EAKEKEVCRDQIKESDKEEEPPAAASHGQGWRPGGRAPRNSRPEPGVRPPALPNMVNDPP 388
EA +E CRDQIK SDK+EEP AA SHGQG+RP GR RNS+PE G RPPA+P MVNDPP
Sbjct: 7 EAGARETCRDQIKGSDKDEEPSAALSHGQGYRPCGRPARNSKPEAGARPPAVPIMVNDPP 66
Query: 389 VPALLWAQEMGHVLAGRARKLLLQFGVLFCTILLLLWVSVFLYGSFYYSYMPTVSHLSPV 568
VPALLWAQE+GHVLAGRAR+L+LQFGVLFCTILLLLWVSVFLYGSFYYSYMPTVSHLSPV
Sbjct: 67 VPALLWAQEVGHVLAGRARRLMLQFGVLFCTILLLLWVSVFLYGSFYYSYMPTVSHLSPV 126
Query: 569 HFYYRTXXXXXXXXXXXFPVANVSLAKGGRDRVLMYGQPYRVTLELELPESRVNQDLGMF 748
HF+YRT FPVANVSLAK GRDRVLMYGQPYRVTLELELPES VNQDLGMF
Sbjct: 127 HFHYRTDCDSSTASLCSFPVANVSLAKSGRDRVLMYGQPYRVTLELELPESPVNQDLGMF 186
Query: 749 LVTISCYTRGGRIISTSFRSVMLHYRSDLLQMLDTLVFSSLLLFGFAEQKQILEVELYPE 928
LVT+SCYTRGGRIISTS RSVMLHYRS LLQ+LDTL+FSSLLLFGFAEQKQ+LEVELY +
Sbjct: 187 LVTVSCYTRGGRIISTSSRSVMLHYRSQLLQVLDTLLFSSLLLFGFAEQKQLLEVELYSD 246
Query: 929 YRKNSYVPTTGAIIEIHS 982
YR+NSYVPTTGAIIEIHS
Sbjct: 247 YRENSYVPTTGAIIEIHS 264
>ref|NP_001129536.1| seipin [Mus musculus].
Length = 443
Score = 434 bits (1117), Expect = e-122
Identities = 215/258 (83%), Positives = 230/258 (89%)
Frame = +2
Query: 209 EAKEKEVCRDQIKESDKEEEPPAAASHGQGWRPGGRAPRNSRPEPGVRPPALPNMVNDPP 388
EA +E CRDQIK SDK+EEP AA SHGQG+RP GR RNS+PE G RPPA+P MVNDPP
Sbjct: 7 EAGARETCRDQIKGSDKDEEPSAALSHGQGYRPCGRPARNSKPEAGARPPAVPIMVNDPP 66
Query: 389 VPALLWAQEMGHVLAGRARKLLLQFGVLFCTILLLLWVSVFLYGSFYYSYMPTVSHLSPV 568
VPALLWAQE+GHVLAGRAR+L+LQFGVLFCTILLLLWVSVFLYGSFYYSYMPTVSHLSPV
Sbjct: 67 VPALLWAQEVGHVLAGRARRLMLQFGVLFCTILLLLWVSVFLYGSFYYSYMPTVSHLSPV 126
Query: 569 HFYYRTXXXXXXXXXXXFPVANVSLAKGGRDRVLMYGQPYRVTLELELPESRVNQDLGMF 748
HF+YRT FPVANVSLAK GRDRVLMYGQPYRVTLELELPES VNQDLGMF
Sbjct: 127 HFHYRTDCDSSTASLCSFPVANVSLAKSGRDRVLMYGQPYRVTLELELPESPVNQDLGMF 186
Query: 749 LVTISCYTRGGRIISTSFRSVMLHYRSDLLQMLDTLVFSSLLLFGFAEQKQILEVELYPE 928
LVT+SCYTRGGRIISTS RSVMLHYRS LLQ+LDTL+FSSLLLFGFAEQKQ+LEVELY +
Sbjct: 187 LVTVSCYTRGGRIISTSSRSVMLHYRSQLLQVLDTLLFSSLLLFGFAEQKQLLEVELYSD 246
Query: 929 YRKNSYVPTTGAIIEIHS 982
YR+NSYVPTTGAIIEIHS
Sbjct: 247 YRENSYVPTTGAIIEIHS 264
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,689,114
Number of extensions: 880914
Number of successful extensions: 5042
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4942
Number of HSP's successfully gapped: 2
Length of query: 337
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 235
Effective length of database: 12,553,887
Effective search space: 2950163445
Effective search space used: 2950163445
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012685
(1011 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001116427.1| seipin isoform 1 [Homo sapiens]. 465 e-131
Alignment gi|NP_116056.3| seipin isoform 2 [Homo sapiens]. 365 e-101
Alignment gi|NP_001124174.2| seipin isoform 3 [Homo sapiens]. 365 e-101
>ref|NP_001116427.1| seipin isoform 1 [Homo sapiens].
Length = 462
Score = 465 bits (1196), Expect = e-131
Identities = 235/269 (87%), Positives = 241/269 (89%)
Frame = +2
Query: 176 MSKEMADQKEGEAKEKEVCRDQIKESDKEEEPPAAASHGQGWRPGGRAPRNSRPEPGVRP 355
MS E DQKE EA EKEVC DQIK DKEEEPPAAASHGQGWRPGGRA RN+RPEPG R
Sbjct: 1 MSTEKVDQKE-EAGEKEVCGDQIKGPDKEEEPPAAASHGQGWRPGGRAARNARPEPGARH 59
Query: 356 PALPNMVNDPPVPALLWAQEMGHVLAGRARKLLLQFGVLFCTILLLLWVSVFLYGSFYYS 535
PALP MVNDPPVPALLWAQE+G VLAGRAR+LLLQFGVLFCTILLLLWVSVFLYGSFYYS
Sbjct: 60 PALPAMVNDPPVPALLWAQEVGQVLAGRARRLLLQFGVLFCTILLLLWVSVFLYGSFYYS 119
Query: 536 YMPTVSHLSPVHFYYRTXXXXXXXXXXXFPVANVSLAKGGRDRVLMYGQPYRVTLELELP 715
YMPTVSHLSPVHFYYRT FPVANVSL KGGRDRVLMYGQPYRVTLELELP
Sbjct: 120 YMPTVSHLSPVHFYYRTDCDSSTTSLCSFPVANVSLTKGGRDRVLMYGQPYRVTLELELP 179
Query: 716 ESRVNQDLGMFLVTISCYTRGGRIISTSFRSVMLHYRSDLLQMLDTLVFSSLLLFGFAEQ 895
ES VNQDLGMFLVTISCYTRGGRIISTS RSVMLHYRSDLLQMLDTLVFSSLLLFGFAEQ
Sbjct: 180 ESPVNQDLGMFLVTISCYTRGGRIISTSSRSVMLHYRSDLLQMLDTLVFSSLLLFGFAEQ 239
Query: 896 KQILEVELYPEYRKNSYVPTTGAIIEIHS 982
KQ+LEVELY +YR+NSYVPTTGAIIEIHS
Sbjct: 240 KQLLEVELYADYRENSYVPTTGAIIEIHS 268
>ref|NP_116056.3| seipin isoform 2 [Homo sapiens].
Length = 398
Score = 365 bits (936), Expect(2) = e-101
Identities = 183/204 (89%), Positives = 188/204 (92%)
Frame = +2
Query: 371 MVNDPPVPALLWAQEMGHVLAGRARKLLLQFGVLFCTILLLLWVSVFLYGSFYYSYMPTV 550
MVNDPPVPALLWAQE+G VLAGRAR+LLLQFGVLFCTILLLLWVSVFLYGSFYYSYMPTV
Sbjct: 1 MVNDPPVPALLWAQEVGQVLAGRARRLLLQFGVLFCTILLLLWVSVFLYGSFYYSYMPTV 60
Query: 551 SHLSPVHFYYRTXXXXXXXXXXXFPVANVSLAKGGRDRVLMYGQPYRVTLELELPESRVN 730
SHLSPVHFYYRT FPVANVSL KGGRDRVLMYGQPYRVTLELELPES VN
Sbjct: 61 SHLSPVHFYYRTDCDSSTTSLCSFPVANVSLTKGGRDRVLMYGQPYRVTLELELPESPVN 120
Query: 731 QDLGMFLVTISCYTRGGRIISTSFRSVMLHYRSDLLQMLDTLVFSSLLLFGFAEQKQILE 910
QDLGMFLVTISCYTRGGRIISTS RSVMLHYRSDLLQMLDTLVFSSLLLFGFAEQKQ+LE
Sbjct: 121 QDLGMFLVTISCYTRGGRIISTSSRSVMLHYRSDLLQMLDTLVFSSLLLFGFAEQKQLLE 180
Query: 911 VELYPEYRKNSYVPTTGAIIEIHS 982
VELY +YR+NSYVPTTGAIIEIHS
Sbjct: 181 VELYADYRENSYVPTTGAIIEIHS 204
Score = 22.7 bits (47), Expect(2) = e-101
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1
Query: 982 QRIQLYGAYL 1011
+RIQLYGAYL
Sbjct: 205 KRIQLYGAYL 214
>ref|NP_001124174.2| seipin isoform 3 [Homo sapiens].
Length = 287
Score = 365 bits (936), Expect(2) = e-101
Identities = 183/204 (89%), Positives = 188/204 (92%)
Frame = +2
Query: 371 MVNDPPVPALLWAQEMGHVLAGRARKLLLQFGVLFCTILLLLWVSVFLYGSFYYSYMPTV 550
MVNDPPVPALLWAQE+G VLAGRAR+LLLQFGVLFCTILLLLWVSVFLYGSFYYSYMPTV
Sbjct: 1 MVNDPPVPALLWAQEVGQVLAGRARRLLLQFGVLFCTILLLLWVSVFLYGSFYYSYMPTV 60
Query: 551 SHLSPVHFYYRTXXXXXXXXXXXFPVANVSLAKGGRDRVLMYGQPYRVTLELELPESRVN 730
SHLSPVHFYYRT FPVANVSL KGGRDRVLMYGQPYRVTLELELPES VN
Sbjct: 61 SHLSPVHFYYRTDCDSSTTSLCSFPVANVSLTKGGRDRVLMYGQPYRVTLELELPESPVN 120
Query: 731 QDLGMFLVTISCYTRGGRIISTSFRSVMLHYRSDLLQMLDTLVFSSLLLFGFAEQKQILE 910
QDLGMFLVTISCYTRGGRIISTS RSVMLHYRSDLLQMLDTLVFSSLLLFGFAEQKQ+LE
Sbjct: 121 QDLGMFLVTISCYTRGGRIISTSSRSVMLHYRSDLLQMLDTLVFSSLLLFGFAEQKQLLE 180
Query: 911 VELYPEYRKNSYVPTTGAIIEIHS 982
VELY +YR+NSYVPTTGAIIEIHS
Sbjct: 181 VELYADYRENSYVPTTGAIIEIHS 204
Score = 22.7 bits (47), Expect(2) = e-101
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1
Query: 982 QRIQLYGAYL 1011
+RIQLYGAYL
Sbjct: 205 KRIQLYGAYL 214
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,083,960
Number of extensions: 1074648
Number of successful extensions: 6465
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6369
Number of HSP's successfully gapped: 5
Length of query: 337
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 234
Effective length of database: 14,901,872
Effective search space: 3487038048
Effective search space used: 3487038048
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012685
(1011 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 634 e-179
>Sscrofa_Chr02
|| Length = 162569375
Score = 634 bits (320), Expect = e-179
Identities = 320/320 (100%)
Strand = Plus / Plus
Query: 264 aggaaccaccagctgctgcatcccatggccaggggtggcgtccaggtggcagagcaccta 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8402300 aggaaccaccagctgctgcatcccatggccaggggtggcgtccaggtggcagagcaccta 8402359
Query: 324 ggaactcaaggcctgaacccggggtcagaccccctgcactccctaacatggtcaatgacc 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8402360 ggaactcaaggcctgaacccggggtcagaccccctgcactccctaacatggtcaatgacc 8402419
Query: 384 caccagtacccgccttactgtgggctcaggagatgggccacgtcctggcaggccgtgccc 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8402420 caccagtacccgccttactgtgggctcaggagatgggccacgtcctggcaggccgtgccc 8402479
Query: 444 gcaagctgttgctgcagtttggggtgctcttctgtaccatcctcctcctgctctgggtgt 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8402480 gcaagctgttgctgcagtttggggtgctcttctgtaccatcctcctcctgctctgggtgt 8402539
Query: 504 ctgtcttcctctacggctccttctactattcctacatgccgacagtcagccacctcagcc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8402540 ctgtcttcctctacggctccttctactattcctacatgccgacagtcagccacctcagcc 8402599
Query: 564 ccgtgcatttctactacagg 583
||||||||||||||||||||
Sbjct: 8402600 ccgtgcatttctactacagg 8402619
Score = 523 bits (264), Expect = e-146
Identities = 264/264 (100%)
Strand = Plus / Plus
Query: 3 ctctgacacagcatttagcacctgactcttcgtttctctcccagggaccctccattccca 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8400566 ctctgacacagcatttagcacctgactcttcgtttctctcccagggaccctccattccca 8400625
Query: 63 atttccaggaaaatgtgatgagctacaggtatcaacttctagatcaccacttaatgacct 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8400626 atttccaggaaaatgtgatgagctacaggtatcaacttctagatcaccacttaatgacct 8400685
Query: 123 agctacaagtgactggcgtggaaaatctaggggcagcgaggtccatcaggaagatgtcta 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8400686 agctacaagtgactggcgtggaaaatctaggggcagcgaggtccatcaggaagatgtcta 8400745
Query: 183 aagaaatggcagaccaaaaagaaggagaagctaaggaaaaagaggtgtgcagagaccaga 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8400746 aagaaatggcagaccaaaaagaaggagaagctaaggaaaaagaggtgtgcagagaccaga 8400805
Query: 243 tcaaagaatcggacaaagaagagg 266
||||||||||||||||||||||||
Sbjct: 8400806 tcaaagaatcggacaaagaagagg 8400829
Score = 283 bits (143), Expect = 9e-74
Identities = 146/147 (99%)
Strand = Plus / Plus
Query: 664 ggtgctgatgtatggacagccgtaccgcgtcaccttagagctcgagctgccagagtctcg 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8407326 ggtgctgatgtatggacagccgtaccgcgtcaccttagagctcgagctgccagagtctcg 8407385
Query: 724 cgtgaaccaagatttgggcatgttcttggtcaccatctcctgctacaccagaggtggccg 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8407386 cgtgaaccaagatttgggcatgttcttggtcaccatctcctgctacaccagaggtggccg 8407445
Query: 784 aatcatctccacctctttccgctccgt 810
||||||||||||||||| |||||||||
Sbjct: 8407446 aatcatctccacctcttcccgctccgt 8407472
Score = 244 bits (123), Expect = 8e-62
Identities = 132/135 (97%)
Strand = Plus / Plus
Query: 809 gtgatgctgcactaccgctcagacctgctccagatgcttgacacgctggtcttctccagc 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8408511 gtgatgctgcactaccgctcagacctgctccagatgcttgacacgctggtcttctccagc 8408570
Query: 869 ctcctgctgttcggctttgctgagcaaaagcagatcctggaggtggagctatacccggaa 928
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 8408571 ctcctgctgttcggctttgcagagcagaagcagatcctggaggtggagctatacccggaa 8408630
Query: 929 tacagaaagaactcg 943
|||||| ||||||||
Sbjct: 8408631 tacagagagaactcg 8408645
Score = 172 bits (87), Expect = 2e-40
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 581 aggaccgactgcgattcttcctcctccttactctgctccttccccgttgccaacgtctca 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8404535 aggaccgactgcgattcttcctcctccttactctgctccttccccgttgccaacgtctca 8404594
Query: 641 ctggctaagggtggacgtgatcgggtg 667
|||||||||||||||||||||||||||
Sbjct: 8404595 ctggctaagggtggacgtgatcgggtg 8404621
Score = 99.6 bits (50), Expect = 3e-18
Identities = 66/70 (94%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 943 gtacgtgccaaccaccggggccattatcgagatccacagc-agcgcatccagctgtacgg 1001
||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 8408830 gtacgtgccgaccaccggcgccattatcgagatccacagcaagcgcatccagctgtacgg 8408889
Query: 1002 ggcctacctc 1011
|||||||||
Sbjct: 8408890 cgcctacctc 8408899
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,395,765
Number of extensions: 170
Number of successful extensions: 170
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 6
Length of query: 1011
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 990
Effective length of database: 2,808,413,156
Effective search space: 2780329024440
Effective search space used: 2780329024440
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)