Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012690
(1467 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001015589.1| seipin [Bos taurus]. 639 0.0
>ref|NP_001015589.1| seipin [Bos taurus].
Length = 394
Score = 639 bits (1648), Expect = 0.0
Identities = 327/400 (81%), Positives = 343/400 (85%)
Frame = +1
Query: 160 MVNDPPVPALLWAQEMGHVLAGRARKLLLQFGVLFCTILLLLWVSVFLYGSFYYSYMPTV 339
MVNDPPVPALLWAQEMGHV+AGRARKLLLQFGV FCTILLLLWVSVFLYGSFYYSYMPTV
Sbjct: 1 MVNDPPVPALLWAQEMGHVMAGRARKLLLQFGVFFCTILLLLWVSVFLYGSFYYSYMPTV 60
Query: 340 SHLSPVHFYYRTXXXXXXXXXXXFPVANVSLAKGGRDRVLMYGQPYRVTLELELPESRVN 519
SHLSPVHF+YRT FPVANV+LAKGGRDRVLMYGQPYRVTLELELPES VN
Sbjct: 61 SHLSPVHFHYRTDCESSTSLLCSFPVANVTLAKGGRDRVLMYGQPYRVTLELELPESPVN 120
Query: 520 QDLGMFLVTISCYXXXXXXXXXXXXXVMLHYRSDLLQMLDTLVFSSLLLFGFAEQKQILE 699
QDLGMFLVTISCY VMLHYRS LLQMLDTLVFSSLLLFGFAEQKQ+LE
Sbjct: 121 QDLGMFLVTISCYTRGGRIISTSSRSVMLHYRSSLLQMLDTLVFSSLLLFGFAEQKQLLE 180
Query: 700 VELYPEYRENSYVPTTGAIIEIHSKRIQLYGAYLRIHAHFTGLRYLLYNFPMTCAFVGVA 879
VELYPEYRENSYVPTTGAIIEIHSKRIQ+YGAYLRIHAHFTGLRYLLYNFPMTCAFVGVA
Sbjct: 181 VELYPEYRENSYVPTTGAIIEIHSKRIQMYGAYLRIHAHFTGLRYLLYNFPMTCAFVGVA 240
Query: 880 SNFTFLSVIVLFSYMQWVWGGVWPRHRLSLQVNVRNRDGSRKKVQRRIAARQPGGTGPQS 1059
SNFTFLSVIVLFSYMQWVWGG+WPR RLSLQVN+RNR SRK +QR+++A QP GPQ
Sbjct: 241 SNFTFLSVIVLFSYMQWVWGGIWPRQRLSLQVNIRNRKRSRKDIQRKVSAHQP---GPQG 297
Query: 1060 QEAAPQLSQVTEHRESPAAPSGTAAEGQLSPEEKPDQQQPLSGEEEPEPEASDGSGSWED 1239
QE +PQLS VTE ES A PSGT EGQLS EEK +QQPLSGEEE EPEASDGSGSWED
Sbjct: 298 QEESPQLSPVTEDGESHADPSGT--EGQLSEEEK-TEQQPLSGEEELEPEASDGSGSWED 354
Query: 1240 ATLLTETSLPVPAPALAPETVGSSESSAGTVRQRPMCSSS 1359
A LLTE +L A APETVGSSE SAG+VRQRP+CSSS
Sbjct: 355 AALLTEANLAASGSAPAPETVGSSEPSAGSVRQRPICSSS 394
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 55,695,112
Number of extensions: 1682024
Number of successful extensions: 13276
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 12929
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 383
Effective length of database: 14,174,046
Effective search space: 5428659618
Effective search space used: 5428659618
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012690
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012690
(1467 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_853538.1| PREDICTED: similar to seipin isoform 2 [Canis f... 696 0.0
Alignment gi|XP_533262.1| PREDICTED: similar to Bernardinelli-Seip congen... 177 2e-44
>ref|XP_853538.1| PREDICTED: similar to seipin isoform 2 [Canis familiaris].
Length = 456
Score = 696 bits (1796), Expect = 0.0
Identities = 351/435 (80%), Positives = 368/435 (84%)
Frame = +1
Query: 55 EPPAAASHGQGWRPGGRAPRNSRPEPGVRPPALPNMVNDPPVPALLWAQEMGHVLAGRAR 234
EPPAA+ HGQ WRPGGRA RNSRPEPG R ALP MVNDPPVPALLWAQE+GH+LAGRAR
Sbjct: 28 EPPAASPHGQAWRPGGRAARNSRPEPGARHSALPAMVNDPPVPALLWAQEVGHILAGRAR 87
Query: 235 KLLLQFGVLFCTILLLLWVSVFLYGSFYYSYMPTVSHLSPVHFYYRTXXXXXXXXXXXFP 414
KLLLQFGVLFCTILLLLWVSVFLYGSFYYSYMPTVSHLSPVHFYYRT FP
Sbjct: 88 KLLLQFGVLFCTILLLLWVSVFLYGSFYYSYMPTVSHLSPVHFYYRTDCDSSTSLLCSFP 147
Query: 415 VANVSLAKGGRDRVLMYGQPYRVTLELELPESRVNQDLGMFLVTISCYXXXXXXXXXXXX 594
VANVSLAKGGRDRVLMYGQPYRVTLELELPES VNQDLGMFLVTISCY
Sbjct: 148 VANVSLAKGGRDRVLMYGQPYRVTLELELPESPVNQDLGMFLVTISCYTRGGRIISTSSR 207
Query: 595 XVMLHYRSDLLQMLDTLVFSSLLLFGFAEQKQILEVELYPEYRENSYVPTTGAIIEIHSK 774
VMLHYRSDLLQMLDTLVFSSLLLFGFAEQKQ+LEVELY EYRENSYVPTTGAIIEIHSK
Sbjct: 208 SVMLHYRSDLLQMLDTLVFSSLLLFGFAEQKQLLEVELYSEYRENSYVPTTGAIIEIHSK 267
Query: 775 RIQLYGAYLRIHAHFTGLRYLLYNFPMTCAFVGVASNFTFLSVIVLFSYMQWVWGGVWPR 954
RIQ+YGAYLRIHAHFTGLRYLLYNFPMTCAF+GVASNFTFLSVIVLFSYMQWVWGG+WPR
Sbjct: 268 RIQMYGAYLRIHAHFTGLRYLLYNFPMTCAFIGVASNFTFLSVIVLFSYMQWVWGGIWPR 327
Query: 955 HRLSLQVNVRNRDGSRKKVQRRIAARQPGGTGPQSQEAAPQLSQVTEHRESPAAPSGTAA 1134
HR SLQVN+R RD S+K VQRRI+A P PQ QE + QLS +TE ESP P G A
Sbjct: 328 HRFSLQVNIRKRDSSQKPVQRRISAHHP---EPQGQEESTQLSDITEDGESPEDPPG--A 382
Query: 1135 EGQLSPEEKPDQQQPLSGEEEPEPEASDGSGSWEDATLLTETSLPVPAPALAPETVGSSE 1314
EGQL EEKPD QPL+GEEE EPEASDGSGSWEDA LLTE +LP P ALAPET+GSSE
Sbjct: 383 EGQLPEEEKPD-PQPLNGEEELEPEASDGSGSWEDAALLTEANLPAPTHALAPETLGSSE 441
Query: 1315 SSAGTVRQRPMCSSS 1359
S G++RQRP CSSS
Sbjct: 442 PSVGSLRQRPTCSSS 456
>ref|XP_533262.1| PREDICTED: similar to Bernardinelli-Seip congenital lipodystrophy 2
homolog (predicted) isoform 1 [Canis familiaris].
Length = 165
Score = 177 bits (450), Expect = 2e-44
Identities = 86/101 (85%), Positives = 89/101 (88%)
Frame = +1
Query: 160 MVNDPPVPALLWAQEMGHVLAGRARKLLLQFGVLFCTILLLLWVSVFLYGSFYYSYMPTV 339
MVNDPPVPALLWAQE+GH+LAGRARKLLLQFGVLFCTILLLLWVSVFLYGSFYYSYMPTV
Sbjct: 1 MVNDPPVPALLWAQEVGHILAGRARKLLLQFGVLFCTILLLLWVSVFLYGSFYYSYMPTV 60
Query: 340 SHLSPVHFYYRTXXXXXXXXXXXFPVANVSLAKGGRDRVLM 462
SHLSPVHFYYRT FPVANVSLAKGGRDR L+
Sbjct: 61 SHLSPVHFYYRTDCDSSTSLLCSFPVANVSLAKGGRDRRLL 101
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 58,196,497
Number of extensions: 1736847
Number of successful extensions: 13914
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 13611
Number of HSP's successfully gapped: 2
Length of query: 489
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 382
Effective length of database: 15,307,552
Effective search space: 5847484864
Effective search space used: 5847484864
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012690
(1467 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001121931.1| seipin [Sus scrofa]. 827 0.0
>ref|NP_001121931.1| seipin [Sus scrofa].
Length = 465
Score = 827 bits (2136), Expect = 0.0
Identities = 411/435 (94%), Positives = 411/435 (94%)
Frame = +1
Query: 55 EPPAAASHGQGWRPGGRAPRNSRPEPGVRPPALPNMVNDPPVPALLWAQEMGHVLAGRAR 234
EPPAAASHGQGWRPGGRAPRNSRPEPGVRPPALPNMVNDPPVPALLWAQEMGHVLAGRAR
Sbjct: 31 EPPAAASHGQGWRPGGRAPRNSRPEPGVRPPALPNMVNDPPVPALLWAQEMGHVLAGRAR 90
Query: 235 KLLLQFGVLFCTILLLLWVSVFLYGSFYYSYMPTVSHLSPVHFYYRTXXXXXXXXXXXFP 414
KLLLQFGVLFCTILLLLWVSVFLYGSFYYSYMPTVSHLSPVHFYYRT FP
Sbjct: 91 KLLLQFGVLFCTILLLLWVSVFLYGSFYYSYMPTVSHLSPVHFYYRTDCDSSSSLLCSFP 150
Query: 415 VANVSLAKGGRDRVLMYGQPYRVTLELELPESRVNQDLGMFLVTISCYXXXXXXXXXXXX 594
VANVSLAKGGRDRVLMYGQPYRVTLELELPESRVNQDLGMFLVTISCY
Sbjct: 151 VANVSLAKGGRDRVLMYGQPYRVTLELELPESRVNQDLGMFLVTISCYTRGGRIISTSSR 210
Query: 595 XVMLHYRSDLLQMLDTLVFSSLLLFGFAEQKQILEVELYPEYRENSYVPTTGAIIEIHSK 774
VMLHYRSDLLQMLDTLVFSSLLLFGFAEQKQILEVELYPEYRENSYVPTTGAIIEIHSK
Sbjct: 211 SVMLHYRSDLLQMLDTLVFSSLLLFGFAEQKQILEVELYPEYRENSYVPTTGAIIEIHSK 270
Query: 775 RIQLYGAYLRIHAHFTGLRYLLYNFPMTCAFVGVASNFTFLSVIVLFSYMQWVWGGVWPR 954
RIQLYGAYLRIHAHFTGLRYLLYNFPMTCAFVGVASNFTFLSVIVLFSYMQWVWGGVWPR
Sbjct: 271 RIQLYGAYLRIHAHFTGLRYLLYNFPMTCAFVGVASNFTFLSVIVLFSYMQWVWGGVWPR 330
Query: 955 HRLSLQVNVRNRDGSRKKVQRRIAARQPGGTGPQSQEAAPQLSQVTEHRESPAAPSGTAA 1134
HRLSLQVNVRNRDGSRKKVQRRIAARQPGGTGPQSQEAAPQLSQVTEHRESPAAPSGTAA
Sbjct: 331 HRLSLQVNVRNRDGSRKKVQRRIAARQPGGTGPQSQEAAPQLSQVTEHRESPAAPSGTAA 390
Query: 1135 EGQLSPEEKPDQQQPLSGEEEPEPEASDGSGSWEDATLLTETSLPVPAPALAPETVGSSE 1314
EGQLSPEEKPDQQQPLSGEEEPEPEASDGSGSWEDATLLTETSLPVPAPALAPETVGSSE
Sbjct: 391 EGQLSPEEKPDQQQPLSGEEEPEPEASDGSGSWEDATLLTETSLPVPAPALAPETVGSSE 450
Query: 1315 SSAGTVRQRPMCSSS 1359
SSAGTVRQRPMCSSS
Sbjct: 451 SSAGTVRQRPMCSSS 465
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,080,457
Number of extensions: 1093510
Number of successful extensions: 8673
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8374
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 386
Effective length of database: 8,779,541
Effective search space: 3388902826
Effective search space used: 3388902826
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012690
(1467 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032170.3| seipin [Mus musculus]. 630 0.0
Alignment gi|NP_001129536.1| seipin [Mus musculus]. 630 0.0
>ref|NP_032170.3| seipin [Mus musculus].
Length = 443
Score = 630 bits (1625), Expect = 0.0
Identities = 328/437 (75%), Positives = 352/437 (80%), Gaps = 2/437 (0%)
Frame = +1
Query: 55 EPPAAASHGQGWRPGGRAPRNSRPEPGVRPPALPNMVNDPPVPALLWAQEMGHVLAGRAR 234
EP AA SHGQG+RP GR RNS+PE G RPPA+P MVNDPPVPALLWAQE+GHVLAGRAR
Sbjct: 26 EPSAALSHGQGYRPCGRPARNSKPEAGARPPAVPIMVNDPPVPALLWAQEVGHVLAGRAR 85
Query: 235 KLLLQFGVLFCTILLLLWVSVFLYGSFYYSYMPTVSHLSPVHFYYRTXXXXXXXXXXXFP 414
+L+LQFGVLFCTILLLLWVSVFLYGSFYYSYMPTVSHLSPVHF+YRT FP
Sbjct: 86 RLMLQFGVLFCTILLLLWVSVFLYGSFYYSYMPTVSHLSPVHFHYRTDCDSSTASLCSFP 145
Query: 415 VANVSLAKGGRDRVLMYGQPYRVTLELELPESRVNQDLGMFLVTISCYXXXXXXXXXXXX 594
VANVSLAK GRDRVLMYGQPYRVTLELELPES VNQDLGMFLVT+SCY
Sbjct: 146 VANVSLAKSGRDRVLMYGQPYRVTLELELPESPVNQDLGMFLVTVSCYTRGGRIISTSSR 205
Query: 595 XVMLHYRSDLLQMLDTLVFSSLLLFGFAEQKQILEVELYPEYRENSYVPTTGAIIEIHSK 774
VMLHYRS LLQ+LDTL+FSSLLLFGFAEQKQ+LEVELY +YRENSYVPTTGAIIEIHSK
Sbjct: 206 SVMLHYRSQLLQVLDTLLFSSLLLFGFAEQKQLLEVELYSDYRENSYVPTTGAIIEIHSK 265
Query: 775 RIQLYGAYLRIHAHFTGLRYLLYNFPMTCAFVGVASNFTFLSVIVLFSYMQWVWGGVWPR 954
RIQ+YGAYLRIHAHFTGLRYLLYNFPMTCAFVGVASNFTFLSVIVLFSYMQWVWG VWPR
Sbjct: 266 RIQMYGAYLRIHAHFTGLRYLLYNFPMTCAFVGVASNFTFLSVIVLFSYMQWVWGAVWPR 325
Query: 955 HRLSLQVNVRNRDGSRKKVQRRIAARQPGGTGPQSQEAAPQLSQVTEHRESPAAPSGTAA 1134
HR SLQVN+R RD S RRI+ QPG + + Q S VTE ESP PSGT
Sbjct: 326 HRFSLQVNIRQRDNSHHGAPRRISRHQPG-------QESTQQSDVTEDGESPEDPSGT-- 376
Query: 1135 EGQLSPEEKPDQQQPLSGEEEPEPEASDGSGSWEDATLLTETSLP--VPAPALAPETVGS 1308
EGQLS EEKP +++PL+GEEE EPEASD GSWEDA LLTE + P A ALAPET+GS
Sbjct: 377 EGQLSEEEKP-EKRPLNGEEEQEPEASD--GSWEDAALLTEANPPTSASASALAPETLGS 433
Query: 1309 SESSAGTVRQRPMCSSS 1359
+RQRP CSSS
Sbjct: 434 -------LRQRPTCSSS 443
>ref|NP_001129536.1| seipin [Mus musculus].
Length = 443
Score = 630 bits (1625), Expect = 0.0
Identities = 328/437 (75%), Positives = 352/437 (80%), Gaps = 2/437 (0%)
Frame = +1
Query: 55 EPPAAASHGQGWRPGGRAPRNSRPEPGVRPPALPNMVNDPPVPALLWAQEMGHVLAGRAR 234
EP AA SHGQG+RP GR RNS+PE G RPPA+P MVNDPPVPALLWAQE+GHVLAGRAR
Sbjct: 26 EPSAALSHGQGYRPCGRPARNSKPEAGARPPAVPIMVNDPPVPALLWAQEVGHVLAGRAR 85
Query: 235 KLLLQFGVLFCTILLLLWVSVFLYGSFYYSYMPTVSHLSPVHFYYRTXXXXXXXXXXXFP 414
+L+LQFGVLFCTILLLLWVSVFLYGSFYYSYMPTVSHLSPVHF+YRT FP
Sbjct: 86 RLMLQFGVLFCTILLLLWVSVFLYGSFYYSYMPTVSHLSPVHFHYRTDCDSSTASLCSFP 145
Query: 415 VANVSLAKGGRDRVLMYGQPYRVTLELELPESRVNQDLGMFLVTISCYXXXXXXXXXXXX 594
VANVSLAK GRDRVLMYGQPYRVTLELELPES VNQDLGMFLVT+SCY
Sbjct: 146 VANVSLAKSGRDRVLMYGQPYRVTLELELPESPVNQDLGMFLVTVSCYTRGGRIISTSSR 205
Query: 595 XVMLHYRSDLLQMLDTLVFSSLLLFGFAEQKQILEVELYPEYRENSYVPTTGAIIEIHSK 774
VMLHYRS LLQ+LDTL+FSSLLLFGFAEQKQ+LEVELY +YRENSYVPTTGAIIEIHSK
Sbjct: 206 SVMLHYRSQLLQVLDTLLFSSLLLFGFAEQKQLLEVELYSDYRENSYVPTTGAIIEIHSK 265
Query: 775 RIQLYGAYLRIHAHFTGLRYLLYNFPMTCAFVGVASNFTFLSVIVLFSYMQWVWGGVWPR 954
RIQ+YGAYLRIHAHFTGLRYLLYNFPMTCAFVGVASNFTFLSVIVLFSYMQWVWG VWPR
Sbjct: 266 RIQMYGAYLRIHAHFTGLRYLLYNFPMTCAFVGVASNFTFLSVIVLFSYMQWVWGAVWPR 325
Query: 955 HRLSLQVNVRNRDGSRKKVQRRIAARQPGGTGPQSQEAAPQLSQVTEHRESPAAPSGTAA 1134
HR SLQVN+R RD S RRI+ QPG + + Q S VTE ESP PSGT
Sbjct: 326 HRFSLQVNIRQRDNSHHGAPRRISRHQPG-------QESTQQSDVTEDGESPEDPSGT-- 376
Query: 1135 EGQLSPEEKPDQQQPLSGEEEPEPEASDGSGSWEDATLLTETSLP--VPAPALAPETVGS 1308
EGQLS EEKP +++PL+GEEE EPEASD GSWEDA LLTE + P A ALAPET+GS
Sbjct: 377 EGQLSEEEKP-EKRPLNGEEEQEPEASD--GSWEDAALLTEANPPTSASASALAPETLGS 433
Query: 1309 SESSAGTVRQRPMCSSS 1359
+RQRP CSSS
Sbjct: 434 -------LRQRPTCSSS 443
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 47,640,740
Number of extensions: 1374432
Number of successful extensions: 10265
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 9838
Number of HSP's successfully gapped: 2
Length of query: 489
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 384
Effective length of database: 12,463,779
Effective search space: 4786091136
Effective search space used: 4786091136
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012690
(1467 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001116427.1| seipin isoform 1 [Homo sapiens]. 699 0.0
Alignment gi|NP_116056.3| seipin isoform 2 [Homo sapiens]. 635 0.0
Alignment gi|NP_001124174.2| seipin isoform 3 [Homo sapiens]. 381 e-105
>ref|NP_001116427.1| seipin isoform 1 [Homo sapiens].
Length = 462
Score = 699 bits (1805), Expect = 0.0
Identities = 356/439 (81%), Positives = 372/439 (84%), Gaps = 4/439 (0%)
Frame = +1
Query: 55 EPPAAASHGQGWRPGGRAPRNSRPEPGVRPPALPNMVNDPPVPALLWAQEMGHVLAGRAR 234
EPPAAASHGQGWRPGGRA RN+RPEPG R PALP MVNDPPVPALLWAQE+G VLAGRAR
Sbjct: 30 EPPAAASHGQGWRPGGRAARNARPEPGARHPALPAMVNDPPVPALLWAQEVGQVLAGRAR 89
Query: 235 KLLLQFGVLFCTILLLLWVSVFLYGSFYYSYMPTVSHLSPVHFYYRTXXXXXXXXXXXFP 414
+LLLQFGVLFCTILLLLWVSVFLYGSFYYSYMPTVSHLSPVHFYYRT FP
Sbjct: 90 RLLLQFGVLFCTILLLLWVSVFLYGSFYYSYMPTVSHLSPVHFYYRTDCDSSTTSLCSFP 149
Query: 415 VANVSLAKGGRDRVLMYGQPYRVTLELELPESRVNQDLGMFLVTISCYXXXXXXXXXXXX 594
VANVSL KGGRDRVLMYGQPYRVTLELELPES VNQDLGMFLVTISCY
Sbjct: 150 VANVSLTKGGRDRVLMYGQPYRVTLELELPESPVNQDLGMFLVTISCYTRGGRIISTSSR 209
Query: 595 XVMLHYRSDLLQMLDTLVFSSLLLFGFAEQKQILEVELYPEYRENSYVPTTGAIIEIHSK 774
VMLHYRSDLLQMLDTLVFSSLLLFGFAEQKQ+LEVELY +YRENSYVPTTGAIIEIHSK
Sbjct: 210 SVMLHYRSDLLQMLDTLVFSSLLLFGFAEQKQLLEVELYADYRENSYVPTTGAIIEIHSK 269
Query: 775 RIQLYGAYLRIHAHFTGLRYLLYNFPMTCAFVGVASNFTFLSVIVLFSYMQWVWGGVWPR 954
RIQLYGAYLRIHAHFTGLRYLLYNFPMTCAF+GVASNFTFLSVIVLFSYMQWVWGG+WPR
Sbjct: 270 RIQLYGAYLRIHAHFTGLRYLLYNFPMTCAFIGVASNFTFLSVIVLFSYMQWVWGGIWPR 329
Query: 955 HRLSLQVNVRNRDGSRKKVQRRIAARQPGGTGPQSQEAAPQLSQVTEHRESPAAPSGTAA 1134
HR SLQVN+R RD SRK+VQRRI+A QP GP+ QE + S VTE ESP PSGT
Sbjct: 330 HRFSLQVNIRKRDNSRKEVQRRISAHQP---GPEGQEESTPQSDVTEDGESPEDPSGT-- 384
Query: 1135 EGQLSPEEKPDQQQPLSGEEEPEPEASDGSGSWEDATLLTETSLPVPAPALAP----ETV 1302
EGQLS EEKPD QQPLSGEEE EPEASDGSGSWEDA LLTE +LP PAPA A ET+
Sbjct: 385 EGQLSEEEKPD-QQPLSGEEELEPEASDGSGSWEDAALLTEANLPAPAPASASAPVLETL 443
Query: 1303 GSSESSAGTVRQRPMCSSS 1359
GSSE + G +RQRP CSSS
Sbjct: 444 GSSEPAGGALRQRPTCSSS 462
>ref|NP_116056.3| seipin isoform 2 [Homo sapiens].
Length = 398
Score = 635 bits (1637), Expect = 0.0
Identities = 326/404 (80%), Positives = 341/404 (84%), Gaps = 4/404 (0%)
Frame = +1
Query: 160 MVNDPPVPALLWAQEMGHVLAGRARKLLLQFGVLFCTILLLLWVSVFLYGSFYYSYMPTV 339
MVNDPPVPALLWAQE+G VLAGRAR+LLLQFGVLFCTILLLLWVSVFLYGSFYYSYMPTV
Sbjct: 1 MVNDPPVPALLWAQEVGQVLAGRARRLLLQFGVLFCTILLLLWVSVFLYGSFYYSYMPTV 60
Query: 340 SHLSPVHFYYRTXXXXXXXXXXXFPVANVSLAKGGRDRVLMYGQPYRVTLELELPESRVN 519
SHLSPVHFYYRT FPVANVSL KGGRDRVLMYGQPYRVTLELELPES VN
Sbjct: 61 SHLSPVHFYYRTDCDSSTTSLCSFPVANVSLTKGGRDRVLMYGQPYRVTLELELPESPVN 120
Query: 520 QDLGMFLVTISCYXXXXXXXXXXXXXVMLHYRSDLLQMLDTLVFSSLLLFGFAEQKQILE 699
QDLGMFLVTISCY VMLHYRSDLLQMLDTLVFSSLLLFGFAEQKQ+LE
Sbjct: 121 QDLGMFLVTISCYTRGGRIISTSSRSVMLHYRSDLLQMLDTLVFSSLLLFGFAEQKQLLE 180
Query: 700 VELYPEYRENSYVPTTGAIIEIHSKRIQLYGAYLRIHAHFTGLRYLLYNFPMTCAFVGVA 879
VELY +YRENSYVPTTGAIIEIHSKRIQLYGAYLRIHAHFTGLRYLLYNFPMTCAF+GVA
Sbjct: 181 VELYADYRENSYVPTTGAIIEIHSKRIQLYGAYLRIHAHFTGLRYLLYNFPMTCAFIGVA 240
Query: 880 SNFTFLSVIVLFSYMQWVWGGVWPRHRLSLQVNVRNRDGSRKKVQRRIAARQPGGTGPQS 1059
SNFTFLSVIVLFSYMQWVWGG+WPRHR SLQVN+R RD SRK+VQRRI+A QP GP+
Sbjct: 241 SNFTFLSVIVLFSYMQWVWGGIWPRHRFSLQVNIRKRDNSRKEVQRRISAHQP---GPEG 297
Query: 1060 QEAAPQLSQVTEHRESPAAPSGTAAEGQLSPEEKPDQQQPLSGEEEPEPEASDGSGSWED 1239
QE + S VTE ESP PSGT EGQLS EEKPD QQPLSGEEE EPEASDGSGSWED
Sbjct: 298 QEESTPQSDVTEDGESPEDPSGT--EGQLSEEEKPD-QQPLSGEEELEPEASDGSGSWED 354
Query: 1240 ATLLTETSLPVPAPALAP----ETVGSSESSAGTVRQRPMCSSS 1359
A LLTE +LP PAPA A ET+GSSE + G +RQRP CSSS
Sbjct: 355 AALLTEANLPAPAPASASAPVLETLGSSEPAGGALRQRPTCSSS 398
>ref|NP_001124174.2| seipin isoform 3 [Homo sapiens].
Length = 287
Score = 381 bits (978), Expect = e-105
Identities = 192/224 (85%), Positives = 196/224 (87%)
Frame = +1
Query: 160 MVNDPPVPALLWAQEMGHVLAGRARKLLLQFGVLFCTILLLLWVSVFLYGSFYYSYMPTV 339
MVNDPPVPALLWAQE+G VLAGRAR+LLLQFGVLFCTILLLLWVSVFLYGSFYYSYMPTV
Sbjct: 1 MVNDPPVPALLWAQEVGQVLAGRARRLLLQFGVLFCTILLLLWVSVFLYGSFYYSYMPTV 60
Query: 340 SHLSPVHFYYRTXXXXXXXXXXXFPVANVSLAKGGRDRVLMYGQPYRVTLELELPESRVN 519
SHLSPVHFYYRT FPVANVSL KGGRDRVLMYGQPYRVTLELELPES VN
Sbjct: 61 SHLSPVHFYYRTDCDSSTTSLCSFPVANVSLTKGGRDRVLMYGQPYRVTLELELPESPVN 120
Query: 520 QDLGMFLVTISCYXXXXXXXXXXXXXVMLHYRSDLLQMLDTLVFSSLLLFGFAEQKQILE 699
QDLGMFLVTISCY VMLHYRSDLLQMLDTLVFSSLLLFGFAEQKQ+LE
Sbjct: 121 QDLGMFLVTISCYTRGGRIISTSSRSVMLHYRSDLLQMLDTLVFSSLLLFGFAEQKQLLE 180
Query: 700 VELYPEYRENSYVPTTGAIIEIHSKRIQLYGAYLRIHAHFTGLR 831
VELY +YRENSYVPTTGAIIEIHSKRIQLYGAYLRIHAHFTGLR
Sbjct: 181 VELYADYRENSYVPTTGAIIEIHSKRIQLYGAYLRIHAHFTGLR 224
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 56,810,070
Number of extensions: 1683394
Number of successful extensions: 12577
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 12211
Number of HSP's successfully gapped: 3
Length of query: 489
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 382
Effective length of database: 14,770,016
Effective search space: 5642146112
Effective search space used: 5642146112
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012690
(1467 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 632 e-178
>Sscrofa_Chr02
|| Length = 162569375
Score = 632 bits (319), Expect = e-178
Identities = 319/319 (100%)
Strand = Plus / Plus
Query: 54 ggaaccaccagctgctgcatcccatggccaggggtggcgtccaggtggcagagcacctag 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8402301 ggaaccaccagctgctgcatcccatggccaggggtggcgtccaggtggcagagcacctag 8402360
Query: 114 gaactcaaggcctgaacccggggtcagaccccctgcactccctaacatggtcaatgaccc 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8402361 gaactcaaggcctgaacccggggtcagaccccctgcactccctaacatggtcaatgaccc 8402420
Query: 174 accagtacccgccttactgtgggctcaggagatgggccacgtcctggcaggccgtgcccg 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8402421 accagtacccgccttactgtgggctcaggagatgggccacgtcctggcaggccgtgcccg 8402480
Query: 234 caagctgttgctgcagtttggggtgctcttctgtaccatcctcctcctgctctgggtgtc 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8402481 caagctgttgctgcagtttggggtgctcttctgtaccatcctcctcctgctctgggtgtc 8402540
Query: 294 tgtcttcctctacggctccttctactattcctacatgccgacagtcagccacctcagccc 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8402541 tgtcttcctctacggctccttctactattcctacatgccgacagtcagccacctcagccc 8402600
Query: 354 cgtgcatttctactacagg 372
|||||||||||||||||||
Sbjct: 8402601 cgtgcatttctactacagg 8402619
Score = 404 bits (204), Expect = e-110
Identities = 229/239 (95%), Gaps = 1/239 (0%)
Strand = Plus / Plus
Query: 1219 ggttcaggctcctgggaagatgcaaccctgttgacagagaccagcctgccagttcctgcc 1278
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 8410392 ggttcaggctcctgggaagatgcaacc-tgttgacagagaccagcctgccagttcctgcc 8410450
Query: 1279 cctgcccttgccccggagaccgtgggcagctccgaatcctccgcgggcaccgtccgccag 1338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8410451 cctgcccttgccccggagaccgtgggcagctccgaatcctccgcgggcaccgtccgccag 8410510
Query: 1339 cgccctatgtgctccagttcctgaagagaacggggcagcgtccccaccttccagccctnn 1398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8410511 cgccctatgtgctccagttcctgaagagaacggggcagcgtccccaccttccagccctcc 8410570
Query: 1399 nnnnnnnaccccttttccgtgccgtggctccccgaataaactattttcgtgccagctgc 1457
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8410571 cccccccaccccttttccgtgccgtggctccccgaataaactattttcgtgccagctgc 8410629
Score = 291 bits (147), Expect = 5e-76
Identities = 147/147 (100%)
Strand = Plus / Plus
Query: 453 ggtgctgatgtatggacagccgtaccgcgtcaccttagagctcgagctgccagagtctcg 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8407326 ggtgctgatgtatggacagccgtaccgcgtcaccttagagctcgagctgccagagtctcg 8407385
Query: 513 cgtgaaccaagatttgggcatgttcttggtcaccatctcctgctacaccagaggtggccg 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8407386 cgtgaaccaagatttgggcatgttcttggtcaccatctcctgctacaccagaggtggccg 8407445
Query: 573 aatcatctccacctcttcccgctccgt 599
|||||||||||||||||||||||||||
Sbjct: 8407446 aatcatctccacctcttcccgctccgt 8407472
Score = 276 bits (139), Expect = 3e-71
Identities = 146/147 (99%), Gaps = 1/147 (0%)
Strand = Plus / Plus
Query: 828 caggtacctgctgtacaacttccccatgacctgcgccttcgtcggcgtcgccagcaactt 887
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 8409354 caggtacctgctgtacaacttccccatgac-tgcgccttcgtcggcgtcgccagcaactt 8409412
Query: 888 caccttcctcagtgtcatcgtgctcttcagctacatgcagtgggtgtggggcggcgtctg 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8409413 caccttcctcagtgtcatcgtgctcttcagctacatgcagtgggtgtggggcggcgtctg 8409472
Query: 948 gccccgacaccgcctctctttgcaggt 974
|||||||||||||||||||||||||||
Sbjct: 8409473 gccccgacaccgcctctctttgcaggt 8409499
Score = 268 bits (135), Expect = 8e-69
Identities = 135/135 (100%)
Strand = Plus / Plus
Query: 598 gtgatgctgcactaccgctcagacctgctccagatgcttgacacgctggtcttctccagc 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8408511 gtgatgctgcactaccgctcagacctgctccagatgcttgacacgctggtcttctccagc 8408570
Query: 658 ctcctgctgttcggctttgcagagcagaagcagatcctggaggtggagctatacccggaa 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8408571 ctcctgctgttcggctttgcagagcagaagcagatcctggaggtggagctatacccggaa 8408630
Query: 718 tacagagagaactcg 732
|||||||||||||||
Sbjct: 8408631 tacagagagaactcg 8408645
Score = 200 bits (101), Expect = 2e-48
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 732 gtacgtgccgaccaccggcgccattatcgagatccacagcaagcgcatccagctgtacgg 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8408830 gtacgtgccgaccaccggcgccattatcgagatccacagcaagcgcatccagctgtacgg 8408889
Query: 792 cgcctacctccgcatccatgcccacttcactgggctcaggt 832
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 8408890 cgcctacctccgcatccatgcccacttcactgggctcaggt 8408930
Score = 188 bits (95), Expect = 6e-45
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 1127 cagctgcagagggccagctgtccccagaggagaagccagatcagcagcagcccctgagtg 1186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8410183 cagctgcagagggccagctgtccccagaggagaagccagatcagcagcagcccctgagtg 8410242
Query: 1187 gcgaggaggagccagagcccgaggccagtgacggt 1221
|||||||||||||||||||||||||||||||||||
Sbjct: 8410243 gcgaggaggagccagagcccgaggccagtgacggt 8410277
Score = 180 bits (91), Expect = 1e-42
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 1039 ggaggcacagggccccaaagccaggaggcggcccctcagctgtcacaggttacagagcac 1098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8409885 ggaggcacagggccccaaagccaggaggcggcccctcagctgtcacaggttacagagcac 8409944
Query: 1099 agggagagccctgcagccccctcggggacag 1129
|||||||||||||||||||||||||||||||
Sbjct: 8409945 agggagagccctgcagccccctcggggacag 8409975
Score = 172 bits (87), Expect = 3e-40
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 370 aggaccgactgcgattcttcctcctccttactctgctccttccccgttgccaacgtctca 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8404535 aggaccgactgcgattcttcctcctccttactctgctccttccccgttgccaacgtctca 8404594
Query: 430 ctggctaagggtggacgtgatcgggtg 456
|||||||||||||||||||||||||||
Sbjct: 8404595 ctggctaagggtggacgtgatcgggtg 8404621
Score = 143 bits (72), Expect = 3e-31
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 969 gcaggtaaacgtccgaaacagagacggctcccgaaagaaagtccagcgaaggattgctgc 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8409642 gcaggtaaacgtccgaaacagagacggctcccgaaagaaagtccagcgaaggattgctgc 8409701
Query: 1029 ccgccagccagg 1040
||||||||||||
Sbjct: 8409702 ccgccagccagg 8409713
Score = 107 bits (54), Expect = 2e-20
Identities = 54/54 (100%)
Strand = Plus / Plus
Query: 2 ttccccgagaggcggaagtgccttctcgcggtttccctggcagcgcgctgctgg 55
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8401588 ttccccgagaggcggaagtgccttctcgcggtttccctggcagcgcgctgctgg 8401641
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,724,158
Number of extensions: 285
Number of successful extensions: 285
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 283
Number of HSP's successfully gapped: 12
Length of query: 1467
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1446
Effective length of database: 2,808,413,156
Effective search space: 4060965423576
Effective search space used: 4060965423576
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)