Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012691
(1297 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849564.1| PREDICTED: similar to SVH protein isoform 2 [Ca... 449 e-126
Alignment gi|XP_533106.2| PREDICTED: similar to SVH protein isoform 1 [Ca... 283 3e-76
Alignment gi|XP_549142.1| PREDICTED: similar to ALEX3 protein [Canis fami... 236 5e-62
Alignment gi|XP_852083.1| PREDICTED: similar to armadillo repeat containi... 230 3e-60
Alignment gi|XP_848721.1| PREDICTED: similar to SVH protein, partial [Can... 174 2e-43
Alignment gi|XP_538116.2| PREDICTED: similar to basic helix-loop-helix do... 144 1e-34
Alignment gi|XP_538118.2| PREDICTED: similar to basic helix-loop-helix do... 129 8e-30
Alignment gi|XP_538117.2| PREDICTED: similar to G protein-coupled recepto... 124 2e-28
Alignment gi|XP_532120.2| PREDICTED: hypothetical protein XP_532120 isofo... 65 2e-10
Alignment gi|XP_851769.1| PREDICTED: hypothetical protein XP_846676 isofo... 65 2e-10
>ref|XP_849564.1| PREDICTED: similar to SVH protein isoform 2 [Canis familiaris].
Length = 306
Score = 449 bits (1156), Expect = e-126
Identities = 230/307 (74%), Positives = 256/307 (83%)
Frame = +2
Query: 308 MGGARDVGWXXXXXXXXXXXCYCIYXXXXXXXXXXXXXXXXXXXSAEDLTNGSYDDILNA 487
MGGARDVGW CY IY SAEDLTNGSYDD+LN
Sbjct: 1 MGGARDVGWVAAGLVLGAGACYYIYKLARGRRRGARGLRLRPSRSAEDLTNGSYDDVLNV 60
Query: 488 EQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQINNPNQSIK 667
+QLQKLLYLLEST+DPVIIE+ALVTLGNNAAFSANQVIIRELGGI I+GS+INNPN SIK
Sbjct: 61 DQLQKLLYLLESTDDPVIIERALVTLGNNAAFSANQVIIRELGGIPIIGSKINNPNHSIK 120
Query: 668 EKXXXXXXXXSVNVENQIKIKVYVNQVCEDVLSGPLNSAVQLAGLRLLTNMTVTNDHQHM 847
EK SVNVENQ+KIKVY+NQVC+DVLSGPL+SAVQLAGLRLLTNMTVTNDHQHM
Sbjct: 121 EKALNALNNLSVNVENQVKIKVYINQVCKDVLSGPLDSAVQLAGLRLLTNMTVTNDHQHM 180
Query: 848 LSTYIADLFHVLLTGNGSTKVQVLKLLLNLSENPAMTDGLLGAQVDSSFLSLFDGHVAKE 1027
L+ Y+ DLFHVLLTG+GSTKVQVLKLL+NLSENPAMT+ LLGAQVDSSF+SL+DGHVAKE
Sbjct: 181 LTDYVTDLFHVLLTGDGSTKVQVLKLLVNLSENPAMTEVLLGAQVDSSFVSLYDGHVAKE 240
Query: 1028 ILVRVLTLFQNIDNCLKKEGRLALQPAFPEGSLFYLLYGDECAQKMRALVYHHDADVKEK 1207
IL+RVLTL QNI+NCL+K G LA+QP FP+GSLF+LLYG+ECAQKMRAL HHDADVKEK
Sbjct: 241 ILLRVLTLSQNINNCLEK-GSLAVQPTFPKGSLFFLLYGEECAQKMRALAKHHDADVKEK 299
Query: 1208 VTMIPKF 1228
VT+IP+F
Sbjct: 300 VTVIPRF 306
>ref|XP_533106.2| PREDICTED: similar to SVH protein isoform 1 [Canis familiaris].
Length = 206
Score = 283 bits (724), Expect = 3e-76
Identities = 145/206 (70%), Positives = 161/206 (78%)
Frame = +2
Query: 308 MGGARDVGWXXXXXXXXXXXCYCIYXXXXXXXXXXXXXXXXXXXSAEDLTNGSYDDILNA 487
MGGARDVGW CY IY SAEDLTNGSYDD+LN
Sbjct: 1 MGGARDVGWVAAGLVLGAGACYYIYKLARGRRRGARGLRLRPSRSAEDLTNGSYDDVLNV 60
Query: 488 EQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQINNPNQSIK 667
+QLQKLLYLLEST+DPVIIE+ALVTLGNNAAFSANQVIIRELGGI I+GS+INNPN SIK
Sbjct: 61 DQLQKLLYLLESTDDPVIIERALVTLGNNAAFSANQVIIRELGGIPIIGSKINNPNHSIK 120
Query: 668 EKXXXXXXXXSVNVENQIKIKVYVNQVCEDVLSGPLNSAVQLAGLRLLTNMTVTNDHQHM 847
EK SVNVENQ+KIKVY+NQVC+DVLSGPL+SAVQLAGLRLLTNMTVTNDHQHM
Sbjct: 121 EKALNALNNLSVNVENQVKIKVYINQVCKDVLSGPLDSAVQLAGLRLLTNMTVTNDHQHM 180
Query: 848 LSTYIADLFHVLLTGNGSTKVQVLKL 925
L+ Y+ DLFHVLLTG+GSTKV++ +L
Sbjct: 181 LTDYVTDLFHVLLTGDGSTKVRMKQL 206
>ref|XP_549142.1| PREDICTED: similar to ALEX3 protein [Canis familiaris].
Length = 379
Score = 236 bits (601), Expect = 5e-62
Identities = 134/267 (50%), Positives = 179/267 (67%), Gaps = 2/267 (0%)
Frame = +2
Query: 464 SYDDILNAEQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQI 643
S D IL+ ++LQK+L L+E +E P I+E AL+ LGNNAA++ N+ IIR+LGG+ IV +
Sbjct: 113 SDDTILSPQELQKVLCLVEMSEKPYILEAALIALGNNAAYAFNRDIIRDLGGLPIVAKIL 172
Query: 644 NNPNQSIKEKXXXXXXXXSVNVENQIKIKVYVNQVCEDVLSGPLNSAVQLAGLRLLTNMT 823
N + +KEK SVN ENQ ++K+Y+NQVC+D ++ LNS+VQLAGLRLLTNMT
Sbjct: 173 NTRDPIVKEKALIVLNNLSVNAENQRRLKIYMNQVCDDTITSRLNSSVQLAGLRLLTNMT 232
Query: 824 VTNDHQHMLSTYIADLFHVLLTGNGSTKVQVLKLLLNLSENPAMTDGLLGAQVDSSFLSL 1003
VTN++QHML+ I+D F + GN TK QVLKLLLNL+ENPAM LL AQV SS SL
Sbjct: 233 VTNEYQHMLANSISDFFRLFSAGNEETKFQVLKLLLNLAENPAMARALLRAQVPSSLGSL 292
Query: 1004 FDGHVAKEILVRVLTLFQNIDNCLKKEGRLALQPAFPEGSLFYLLYGDE-CAQKMRALVY 1180
F KE+++++L +F+NI++ K E Q F EGSLF+ L + CA K+ +
Sbjct: 293 FTKKENKEVILKLLVIFENINDNFKCEETEPAQDQFSEGSLFFFLKEFQGCADKILGIES 352
Query: 1181 HHDADVKEKV-TMIPKF*LVGRVFPGS 1258
HHD VK KV + K L R+FP S
Sbjct: 353 HHDFLVKVKVGKFMAK--LAERMFPKS 377
>ref|XP_852083.1| PREDICTED: similar to armadillo repeat containing, X-linked 1 [Canis
familiaris].
Length = 459
Score = 230 bits (586), Expect = 3e-60
Identities = 125/251 (49%), Positives = 167/251 (66%), Gaps = 1/251 (0%)
Frame = +2
Query: 470 DDILNAEQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQINN 649
DDIL A LQK+L +LE + DP I E ALVTLGNNAA+S NQ IRELGG+ I+ I
Sbjct: 205 DDILGAPDLQKVLNILERSNDPFIQEIALVTLGNNAAYSFNQNAIRELGGLPIIAKLIKT 264
Query: 650 PNQSIKEKXXXXXXXXSVNVENQIKIKVYVNQVCEDVLSGPLNSAVQLAGLRLLTNMTVT 829
+ I+EK SVN ENQ KIK Y++QVC+D + L+SAVQ+AGLRLLTNMTVT
Sbjct: 265 KDPIIREKAYNALNNLSVNAENQGKIKTYISQVCDDTMICRLDSAVQMAGLRLLTNMTVT 324
Query: 830 NDHQHMLSTYIADLFHVLLTGNGSTKVQVLKLLLNLSENPAMTDGLLGAQVDSSFLSLFD 1009
N +QH+LS D F +L GN TK+Q++KL++N +ENPAMT L+ +V S +SLF+
Sbjct: 325 NHYQHLLSYSFPDFFALLFLGNYFTKIQIMKLIINFTENPAMTRELVSCKVPSELISLFN 384
Query: 1010 GHVAKEILVRVLTLFQNIDNCLKKEGRLALQPAFPEGSLFYLL-YGDECAQKMRALVYHH 1186
+EIL+ +LTLF+NI++ +K EG + + F SLF+L C +K++AL H+
Sbjct: 385 KEWDREILLNILTLFENINDNIKNEGLASSKKEFSRSSLFFLFKESGVCVKKIKALANHN 444
Query: 1187 DADVKEKVTMI 1219
D VK KV +
Sbjct: 445 DLVVKVKVLKV 455
>ref|XP_848721.1| PREDICTED: similar to SVH protein, partial [Canis familiaris].
Length = 106
Score = 174 bits (441), Expect = 2e-43
Identities = 87/107 (81%), Positives = 100/107 (93%)
Frame = +2
Query: 908 VQVLKLLLNLSENPAMTDGLLGAQVDSSFLSLFDGHVAKEILVRVLTLFQNIDNCLKKEG 1087
VQVLKLL+NLSENPAMT+ LLGAQVDSSF+SL+DGHVAKEIL+RVLTL QNI+NCL+K G
Sbjct: 1 VQVLKLLVNLSENPAMTEVLLGAQVDSSFVSLYDGHVAKEILLRVLTLSQNINNCLEK-G 59
Query: 1088 RLALQPAFPEGSLFYLLYGDECAQKMRALVYHHDADVKEKVTMIPKF 1228
LA+QP FP+GSLF+LLYG+ECAQKMRAL HHDADVKEKVT+IP+F
Sbjct: 60 SLAVQPTFPKGSLFFLLYGEECAQKMRALAKHHDADVKEKVTVIPRF 106
>ref|XP_538116.2| PREDICTED: similar to basic helix-loop-helix domain containing, class
B, 9 [Canis familiaris].
Length = 608
Score = 144 bits (364), Expect = 1e-34
Identities = 84/250 (33%), Positives = 146/250 (58%), Gaps = 1/250 (0%)
Frame = +2
Query: 464 SYDDILNAEQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQI 643
S D L ++ KL+ LL+ T+DP I E A + +G + A+ Q II ++G ++ + +
Sbjct: 352 SRDFSLEPKEFDKLVALLKLTKDPFIHEIATMIMGISPAYPFTQDIIHDVGITVMIENLV 411
Query: 644 NNPNQSIKEKXXXXXXXXSVNVENQIKIKVYVNQVCEDVLSGPLNSAVQLAGLRLLTNMT 823
+NPN + + S + E + + Y++QVC+D++S PLNS VQLAGL+LL +++
Sbjct: 412 SNPNVTEHPRALNMVDDNSESSEERKPAESYIHQVCKDIISYPLNSPVQLAGLKLLVHLS 471
Query: 824 VTNDHQHMLSTYIADLFHVLLTGNGSTKVQVLKLLLNLSENPAMTDGLLGAQVDSSFLSL 1003
V + H+++ YI D +L G+ TK VLK+ L LS+N A T L+ A+V SS ++
Sbjct: 472 VKFEDHHIIANYIPDFLTLLNNGSVKTKFYVLKVFLRLSKNQANTRELISAKVLSSLVAP 531
Query: 1004 FDGHVAKEILVRVLTLFQNIDNCLKKEGRLALQPAFPEGSLFYLLY-GDECAQKMRALVY 1180
F+ + +K ++ ++ +F+NI+ KK+ +L + F + L + E QK++ L
Sbjct: 532 FNKNESKANILSIIEIFENINFQFKKKAKLFTKEEFTKSELISIFQEAKEFGQKLQDLAE 591
Query: 1181 HHDADVKEKV 1210
H D +V++KV
Sbjct: 592 HSDPEVRDKV 601
>ref|XP_538118.2| PREDICTED: similar to basic helix-loop-helix domain containing, class
B, 9 [Canis familiaris].
Length = 535
Score = 129 bits (323), Expect = 8e-30
Identities = 71/201 (35%), Positives = 122/201 (60%)
Frame = +2
Query: 479 LNAEQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQINNPNQ 658
+++E+ +KL+ LL+ST DP+I + A + +G Q I E+G +T++ S ++ P+
Sbjct: 308 MDSEEFEKLVTLLKSTTDPLIHKIAQIAMGIINVHPFAQEFINEVGVVTLIESLLSFPSS 367
Query: 659 SIKEKXXXXXXXXSVNVENQIKIKVYVNQVCEDVLSGPLNSAVQLAGLRLLTNMTVTNDH 838
I++K S + E Q KI+++V +C++ +S PLNS Q +GLR+L +T DH
Sbjct: 368 EIRKKAIITLNPPSGD-ERQRKIELHVKHMCKETMSFPLNSPGQQSGLRILGQLTTDFDH 426
Query: 839 QHMLSTYIADLFHVLLTGNGSTKVQVLKLLLNLSENPAMTDGLLGAQVDSSFLSLFDGHV 1018
H+++ Y ++LFH+L GN T+ VLK+LLN+SENPA ++ A+ ++ +F+
Sbjct: 427 HHIVANYFSELFHLLSLGNRKTRNLVLKVLLNMSENPAAARDMINAKALAALKLIFNQKE 486
Query: 1019 AKEILVRVLTLFQNIDNCLKK 1081
AK LV + +F NI ++K
Sbjct: 487 AKANLVSAVAIFINIKEHIRK 507
>ref|XP_538117.2| PREDICTED: similar to G protein-coupled receptor associated sorting
protein 1 [Canis familiaris].
Length = 1318
Score = 124 bits (311), Expect = 2e-28
Identities = 66/202 (32%), Positives = 119/202 (58%)
Frame = +2
Query: 479 LNAEQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQINNPNQ 658
+ +E+ ++LL L++ +DP I E + +T+G +A + IR+ G ++++ + +N P+
Sbjct: 1076 IGSEEFEELLLLMDKIQDPFIHEISEITMGLRSASQFTRDFIRDSGVVSLIETLLNYPSS 1135
Query: 659 SIKEKXXXXXXXXSVNVENQIKIKVYVNQVCEDVLSGPLNSAVQLAGLRLLTNMTVTNDH 838
++ + N I+ YV QVCE+ L+ L+S QL+G+R++ ++T T D+
Sbjct: 1136 RVRTSFLENMIRLAPPYPNLNMIQTYVCQVCEETLAYSLDSPEQLSGIRMVRHLTTTTDY 1195
Query: 839 QHMLSTYIADLFHVLLTGNGSTKVQVLKLLLNLSENPAMTDGLLGAQVDSSFLSLFDGHV 1018
+++ Y++ +L GN T+ VLK+L+NL ENP MT LL A+ S F+ L +
Sbjct: 1196 HTLVAKYMSGFLSLLAMGNTKTRFHVLKMLMNLFENPVMTKELLHAKAMSEFMGLCNRKE 1255
Query: 1019 AKEILVRVLTLFQNIDNCLKKE 1084
+ ++VL +F+NIDN +KKE
Sbjct: 1256 TND-NIQVLAMFENIDNNIKKE 1276
>ref|XP_532120.2| PREDICTED: hypothetical protein XP_532120 isoform 2 [Canis
familiaris].
Length = 340
Score = 64.7 bits (156), Expect = 2e-10
Identities = 59/239 (24%), Positives = 113/239 (47%), Gaps = 2/239 (0%)
Frame = +2
Query: 491 QLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQINNPNQSIKE 670
+L++LL LE +D L ++ + I +VGS +++ + S+K
Sbjct: 69 ELRRLLNSLECKQDEYAKSMILHSITRCVYLLEAEASACTNDDIRLVGSMLDDNDNSVKI 128
Query: 671 KXXXXXXXXSVNVENQIKIKVYVNQVCEDVLSGPLNSAVQLAGLRLLTNMTVTNDHQHML 850
+ S + ++KI+ + +V E ++S +S + +AGLRLL ++++ + L
Sbjct: 129 QALNTLKAFSGIRKFRLKIQEHSIKVLE-LISTIWDSELHIAGLRLLNSLSLPDYVHPQL 187
Query: 851 STYIADLFHVLLTGNGSTKVQVLKLLLNLSENPAMTDGLLGAQVDSSFLSLFDGHVAKEI 1030
+ L +L + +VQ ++LL L++ + +L QV S+FL+LF +
Sbjct: 188 RRVMPALMEILQSDYILAQVQAIRLLSYLAQKNDLLYDILNCQVHSNFLNLFQTTQPGSL 247
Query: 1031 LVRVLTLFQNIDNCLKKEGRLALQPAFPEGSLFYLLYGDE--CAQKMRALVYHHDADVK 1201
L VL + + A++ + E SL L+GDE A ++ ALV H + +V+
Sbjct: 248 LFEVLVFAERLSEGRNSPHYRAVKWHYNEQSLHEALFGDESRLADRLLALVIHPEEEVQ 306
>ref|XP_851769.1| PREDICTED: hypothetical protein XP_846676 isoform 3 [Canis
familiaris].
Length = 367
Score = 64.7 bits (156), Expect = 2e-10
Identities = 59/239 (24%), Positives = 113/239 (47%), Gaps = 2/239 (0%)
Frame = +2
Query: 491 QLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQINNPNQSIKE 670
+L++LL LE +D L ++ + I +VGS +++ + S+K
Sbjct: 96 ELRRLLNSLECKQDEYAKSMILHSITRCVYLLEAEASACTNDDIRLVGSMLDDNDNSVKI 155
Query: 671 KXXXXXXXXSVNVENQIKIKVYVNQVCEDVLSGPLNSAVQLAGLRLLTNMTVTNDHQHML 850
+ S + ++KI+ + +V E ++S +S + +AGLRLL ++++ + L
Sbjct: 156 QALNTLKAFSGIRKFRLKIQEHSIKVLE-LISTIWDSELHIAGLRLLNSLSLPDYVHPQL 214
Query: 851 STYIADLFHVLLTGNGSTKVQVLKLLLNLSENPAMTDGLLGAQVDSSFLSLFDGHVAKEI 1030
+ L +L + +VQ ++LL L++ + +L QV S+FL+LF +
Sbjct: 215 RRVMPALMEILQSDYILAQVQAIRLLSYLAQKNDLLYDILNCQVHSNFLNLFQTTQPGSL 274
Query: 1031 LVRVLTLFQNIDNCLKKEGRLALQPAFPEGSLFYLLYGDE--CAQKMRALVYHHDADVK 1201
L VL + + A++ + E SL L+GDE A ++ ALV H + +V+
Sbjct: 275 LFEVLVFAERLSEGRNSPHYRAVKWHYNEQSLHEALFGDESRLADRLLALVIHPEEEVQ 333
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,536,025
Number of extensions: 1074058
Number of successful extensions: 3328
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 3316
Number of HSP's successfully gapped: 10
Length of query: 432
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 326
Effective length of database: 15,340,888
Effective search space: 5001129488
Effective search space used: 5001129488
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012691
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012691
(1297 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001178261.1| armadillo repeat-containing protein 10 [Bos ... 456 e-128
Alignment gi|XP_002686800.1| PREDICTED: armadillo repeat containing 10 is... 456 e-128
Alignment gi|XP_002686801.1| PREDICTED: armadillo repeat containing 10 is... 404 e-113
Alignment gi|XP_002704118.1| PREDICTED: SVH protein isoform 2 [Bos taurus]. 404 e-113
Alignment gi|XP_002686802.1| PREDICTED: armadillo repeat containing 10 is... 256 2e-68
Alignment gi|XP_002704119.1| PREDICTED: SVH protein isoform 3 [Bos taurus]. 256 2e-68
Alignment gi|NP_001179382.1| armadillo repeat-containing X-linked protein... 235 7e-62
Alignment gi|XP_002699866.1| PREDICTED: armadillo repeat containing, X-li... 235 7e-62
Alignment gi|NP_001068635.1| armadillo repeat-containing X-linked protein... 229 5e-60
Alignment gi|NP_001070428.1| armadillo repeat-containing X-linked protein... 213 4e-55
>ref|NP_001178261.1| armadillo repeat-containing protein 10 [Bos taurus].
Length = 307
Score = 456 bits (1173), Expect = e-128
Identities = 236/307 (76%), Positives = 251/307 (81%)
Frame = +2
Query: 308 MGGARDVGWXXXXXXXXXXXCYCIYXXXXXXXXXXXXXXXXXXXSAEDLTNGSYDDILNA 487
MGGARDVGW CYC Y SAEDLT+GSYDD LNA
Sbjct: 1 MGGARDVGWVAAGLVLAAGACYCFYKLTRGRRRGGRQLRLRPSRSAEDLTSGSYDDTLNA 60
Query: 488 EQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQINNPNQSIK 667
EQ+QKLLYLLESTEDPVIIE+ALVTLGNNAAFSANQ++IRELGGI IVGS+INNPNQSIK
Sbjct: 61 EQVQKLLYLLESTEDPVIIERALVTLGNNAAFSANQIVIRELGGIPIVGSKINNPNQSIK 120
Query: 668 EKXXXXXXXXSVNVENQIKIKVYVNQVCEDVLSGPLNSAVQLAGLRLLTNMTVTNDHQHM 847
EK SVNVENQIKIKVYV+QVCEDV++GPLNSAVQLAGLRLLTNMTVTNDHQ M
Sbjct: 121 EKALNALNNLSVNVENQIKIKVYVSQVCEDVIAGPLNSAVQLAGLRLLTNMTVTNDHQDM 180
Query: 848 LSTYIADLFHVLLTGNGSTKVQVLKLLLNLSENPAMTDGLLGAQVDSSFLSLFDGHVAKE 1027
LS+YI DLFHVL+TGNGSTKVQVLKLLLNLSENPAMTD LL AQVDSSFLSL DGHV KE
Sbjct: 181 LSSYITDLFHVLVTGNGSTKVQVLKLLLNLSENPAMTDRLLDAQVDSSFLSLLDGHVPKE 240
Query: 1028 ILVRVLTLFQNIDNCLKKEGRLALQPAFPEGSLFYLLYGDECAQKMRALVYHHDADVKEK 1207
IL+R LTL QNI NCL +E RLA QP FPEGSLF LLYG ECAQKM+ALV+HHDADVKEK
Sbjct: 241 ILLRALTLLQNITNCLNEEHRLAAQPTFPEGSLFSLLYGKECAQKMKALVHHHDADVKEK 300
Query: 1208 VTMIPKF 1228
VTMIPKF
Sbjct: 301 VTMIPKF 307
>ref|XP_002686800.1| PREDICTED: armadillo repeat containing 10 isoform 1 [Bos taurus].
Length = 307
Score = 456 bits (1173), Expect = e-128
Identities = 236/307 (76%), Positives = 251/307 (81%)
Frame = +2
Query: 308 MGGARDVGWXXXXXXXXXXXCYCIYXXXXXXXXXXXXXXXXXXXSAEDLTNGSYDDILNA 487
MGGARDVGW CYC Y SAEDLT+GSYDD LNA
Sbjct: 1 MGGARDVGWVAAGLVLAAGACYCFYKLTRGRRRGGRQLRLRPSRSAEDLTSGSYDDTLNA 60
Query: 488 EQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQINNPNQSIK 667
EQ+QKLLYLLESTEDPVIIE+ALVTLGNNAAFSANQ++IRELGGI IVGS+INNPNQSIK
Sbjct: 61 EQVQKLLYLLESTEDPVIIERALVTLGNNAAFSANQIVIRELGGIPIVGSKINNPNQSIK 120
Query: 668 EKXXXXXXXXSVNVENQIKIKVYVNQVCEDVLSGPLNSAVQLAGLRLLTNMTVTNDHQHM 847
EK SVNVENQIKIKVYV+QVCEDV++GPLNSAVQLAGLRLLTNMTVTNDHQ M
Sbjct: 121 EKALNALNNLSVNVENQIKIKVYVSQVCEDVIAGPLNSAVQLAGLRLLTNMTVTNDHQDM 180
Query: 848 LSTYIADLFHVLLTGNGSTKVQVLKLLLNLSENPAMTDGLLGAQVDSSFLSLFDGHVAKE 1027
LS+YI DLFHVL+TGNGSTKVQVLKLLLNLSENPAMTD LL AQVDSSFLSL DGHV KE
Sbjct: 181 LSSYITDLFHVLVTGNGSTKVQVLKLLLNLSENPAMTDRLLDAQVDSSFLSLLDGHVPKE 240
Query: 1028 ILVRVLTLFQNIDNCLKKEGRLALQPAFPEGSLFYLLYGDECAQKMRALVYHHDADVKEK 1207
IL+R LTL QNI NCL +E RLA QP FPEGSLF LLYG ECAQKM+ALV+HHDADVKEK
Sbjct: 241 ILLRALTLLQNITNCLNEEHRLAAQPTFPEGSLFSLLYGKECAQKMKALVHHHDADVKEK 300
Query: 1208 VTMIPKF 1228
VTMIPKF
Sbjct: 301 VTMIPKF 307
>ref|XP_002686801.1| PREDICTED: armadillo repeat containing 10 isoform 2 [Bos taurus].
Length = 283
Score = 404 bits (1038), Expect = e-113
Identities = 214/307 (69%), Positives = 229/307 (74%)
Frame = +2
Query: 308 MGGARDVGWXXXXXXXXXXXCYCIYXXXXXXXXXXXXXXXXXXXSAEDLTNGSYDDILNA 487
MGGARDVGW CYC Y SAEDLT+GSYDD LNA
Sbjct: 1 MGGARDVGWVAAGLVLAAGACYCFYKLTRGRRRGGRQLRLRPSRSAEDLTSGSYDDTLNA 60
Query: 488 EQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQINNPNQSIK 667
EQ+QKLLYLLESTEDPVIIE+ALVTLGNNAAFSANQ++IRELGGI IVGS+INNPNQSIK
Sbjct: 61 EQVQKLLYLLESTEDPVIIERALVTLGNNAAFSANQIVIRELGGIPIVGSKINNPNQSIK 120
Query: 668 EKXXXXXXXXSVNVENQIKIKVYVNQVCEDVLSGPLNSAVQLAGLRLLTNMTVTNDHQHM 847
EK SVNVENQIKIKVYV+QVCEDV++GPLNSAVQLAGLRLLTNMTVTNDHQ M
Sbjct: 121 EKALNALNNLSVNVENQIKIKVYVSQVCEDVIAGPLNSAVQLAGLRLLTNMTVTNDHQDM 180
Query: 848 LSTYIADLFHVLLTGNGSTKVQVLKLLLNLSENPAMTDGLLGAQVDSSFLSLFDGHVAKE 1027
LS+YI DLFHVL+TGNGSTK VDSSFLSL DGHV KE
Sbjct: 181 LSSYITDLFHVLVTGNGSTK------------------------VDSSFLSLLDGHVPKE 216
Query: 1028 ILVRVLTLFQNIDNCLKKEGRLALQPAFPEGSLFYLLYGDECAQKMRALVYHHDADVKEK 1207
IL+R LTL QNI NCL +E RLA QP FPEGSLF LLYG ECAQKM+ALV+HHDADVKEK
Sbjct: 217 ILLRALTLLQNITNCLNEEHRLAAQPTFPEGSLFSLLYGKECAQKMKALVHHHDADVKEK 276
Query: 1208 VTMIPKF 1228
VTMIPKF
Sbjct: 277 VTMIPKF 283
>ref|XP_002704118.1| PREDICTED: SVH protein isoform 2 [Bos taurus].
Length = 283
Score = 404 bits (1038), Expect = e-113
Identities = 214/307 (69%), Positives = 229/307 (74%)
Frame = +2
Query: 308 MGGARDVGWXXXXXXXXXXXCYCIYXXXXXXXXXXXXXXXXXXXSAEDLTNGSYDDILNA 487
MGGARDVGW CYC Y SAEDLT+GSYDD LNA
Sbjct: 1 MGGARDVGWVAAGLVLAAGACYCFYKLTRGRRRGGRQLRLRPSRSAEDLTSGSYDDTLNA 60
Query: 488 EQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQINNPNQSIK 667
EQ+QKLLYLLESTEDPVIIE+ALVTLGNNAAFSANQ++IRELGGI IVGS+INNPNQSIK
Sbjct: 61 EQVQKLLYLLESTEDPVIIERALVTLGNNAAFSANQIVIRELGGIPIVGSKINNPNQSIK 120
Query: 668 EKXXXXXXXXSVNVENQIKIKVYVNQVCEDVLSGPLNSAVQLAGLRLLTNMTVTNDHQHM 847
EK SVNVENQIKIKVYV+QVCEDV++GPLNSAVQLAGLRLLTNMTVTNDHQ M
Sbjct: 121 EKALNALNNLSVNVENQIKIKVYVSQVCEDVIAGPLNSAVQLAGLRLLTNMTVTNDHQDM 180
Query: 848 LSTYIADLFHVLLTGNGSTKVQVLKLLLNLSENPAMTDGLLGAQVDSSFLSLFDGHVAKE 1027
LS+YI DLFHVL+TGNGSTK VDSSFLSL DGHV KE
Sbjct: 181 LSSYITDLFHVLVTGNGSTK------------------------VDSSFLSLLDGHVPKE 216
Query: 1028 ILVRVLTLFQNIDNCLKKEGRLALQPAFPEGSLFYLLYGDECAQKMRALVYHHDADVKEK 1207
IL+R LTL QNI NCL +E RLA QP FPEGSLF LLYG ECAQKM+ALV+HHDADVKEK
Sbjct: 217 ILLRALTLLQNITNCLNEEHRLAAQPTFPEGSLFSLLYGKECAQKMKALVHHHDADVKEK 276
Query: 1208 VTMIPKF 1228
VTMIPKF
Sbjct: 277 VTMIPKF 283
>ref|XP_002686802.1| PREDICTED: armadillo repeat containing 10 isoform 3 [Bos taurus].
Length = 248
Score = 256 bits (655), Expect = 2e-68
Identities = 155/307 (50%), Positives = 174/307 (56%)
Frame = +2
Query: 308 MGGARDVGWXXXXXXXXXXXCYCIYXXXXXXXXXXXXXXXXXXXSAEDLTNGSYDDILNA 487
MGGARDVGW CYC Y SAEDLT+GSYDD LNA
Sbjct: 1 MGGARDVGWVAAGLVLAAGACYCFYKLTRGRRRGGRQLRLRPSRSAEDLTSGSYDDTLNA 60
Query: 488 EQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQINNPNQSIK 667
EQ+QKLLYLLESTEDPVIIE+ALVTLGNNAAFSANQ++IRELGGI IVGS+INNPNQSIK
Sbjct: 61 EQVQKLLYLLESTEDPVIIERALVTLGNNAAFSANQIVIRELGGIPIVGSKINNPNQSIK 120
Query: 668 EKXXXXXXXXSVNVENQIKIKVYVNQVCEDVLSGPLNSAVQLAGLRLLTNMTVTNDHQHM 847
EK SVNVENQIKIKV V ++ L L N +T+ +
Sbjct: 121 EKALNALNNLSVNVENQIKIKVQVLKLL----------------LNLSENPAMTD---RL 161
Query: 848 LSTYIADLFHVLLTGNGSTKVQVLKLLLNLSENPAMTDGLLGAQVDSSFLSLFDGHVAKE 1027
L + F LL G+ ++ + L L
Sbjct: 162 LDAQVDSSFLSLLDGHVPKEILLRALTL-------------------------------- 189
Query: 1028 ILVRVLTLFQNIDNCLKKEGRLALQPAFPEGSLFYLLYGDECAQKMRALVYHHDADVKEK 1207
QNI NCL +E RLA QP FPEGSLF LLYG ECAQKM+ALV+HHDADVKEK
Sbjct: 190 --------LQNITNCLNEEHRLAAQPTFPEGSLFSLLYGKECAQKMKALVHHHDADVKEK 241
Query: 1208 VTMIPKF 1228
VTMIPKF
Sbjct: 242 VTMIPKF 248
>ref|XP_002704119.1| PREDICTED: SVH protein isoform 3 [Bos taurus].
Length = 248
Score = 256 bits (655), Expect = 2e-68
Identities = 155/307 (50%), Positives = 174/307 (56%)
Frame = +2
Query: 308 MGGARDVGWXXXXXXXXXXXCYCIYXXXXXXXXXXXXXXXXXXXSAEDLTNGSYDDILNA 487
MGGARDVGW CYC Y SAEDLT+GSYDD LNA
Sbjct: 1 MGGARDVGWVAAGLVLAAGACYCFYKLTRGRRRGGRQLRLRPSRSAEDLTSGSYDDTLNA 60
Query: 488 EQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQINNPNQSIK 667
EQ+QKLLYLLESTEDPVIIE+ALVTLGNNAAFSANQ++IRELGGI IVGS+INNPNQSIK
Sbjct: 61 EQVQKLLYLLESTEDPVIIERALVTLGNNAAFSANQIVIRELGGIPIVGSKINNPNQSIK 120
Query: 668 EKXXXXXXXXSVNVENQIKIKVYVNQVCEDVLSGPLNSAVQLAGLRLLTNMTVTNDHQHM 847
EK SVNVENQIKIKV V ++ L L N +T+ +
Sbjct: 121 EKALNALNNLSVNVENQIKIKVQVLKLL----------------LNLSENPAMTD---RL 161
Query: 848 LSTYIADLFHVLLTGNGSTKVQVLKLLLNLSENPAMTDGLLGAQVDSSFLSLFDGHVAKE 1027
L + F LL G+ ++ + L L
Sbjct: 162 LDAQVDSSFLSLLDGHVPKEILLRALTL-------------------------------- 189
Query: 1028 ILVRVLTLFQNIDNCLKKEGRLALQPAFPEGSLFYLLYGDECAQKMRALVYHHDADVKEK 1207
QNI NCL +E RLA QP FPEGSLF LLYG ECAQKM+ALV+HHDADVKEK
Sbjct: 190 --------LQNITNCLNEEHRLAAQPTFPEGSLFSLLYGKECAQKMKALVHHHDADVKEK 241
Query: 1208 VTMIPKF 1228
VTMIPKF
Sbjct: 242 VTMIPKF 248
>ref|NP_001179382.1| armadillo repeat-containing X-linked protein 3 [Bos taurus].
Length = 379
Score = 235 bits (599), Expect = 7e-62
Identities = 129/250 (51%), Positives = 173/250 (69%), Gaps = 1/250 (0%)
Frame = +2
Query: 464 SYDDILNAEQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQI 643
S D IL+ ++LQK+L L+E +E P I+E AL+ LGNNAA++ N+ IIR+LGG+ IV +
Sbjct: 113 SDDTILSPQELQKVLCLVEMSEKPYILEAALIALGNNAAYAFNRDIIRDLGGLPIVAKIL 172
Query: 644 NNPNQSIKEKXXXXXXXXSVNVENQIKIKVYVNQVCEDVLSGPLNSAVQLAGLRLLTNMT 823
N + +KEK SVN ENQ ++K+Y+NQVC+D ++ LNS+VQLAGLRLLTNMT
Sbjct: 173 NTRDPIVKEKALIVLNNLSVNAENQRRLKIYMNQVCDDTITSRLNSSVQLAGLRLLTNMT 232
Query: 824 VTNDHQHMLSTYIADLFHVLLTGNGSTKVQVLKLLLNLSENPAMTDGLLGAQVDSSFLSL 1003
VTN++QHML+ I+D F + GN TK QVLKLLLNL+ENPAMT LL AQV SS SL
Sbjct: 233 VTNEYQHMLANSISDFFRLFSAGNEETKFQVLKLLLNLAENPAMTRELLRAQVPSSLGSL 292
Query: 1004 FDGHVAKEILVRVLTLFQNIDNCLKKEGRLALQPAFPEGSLFYLLYGDE-CAQKMRALVY 1180
F+ KE+++++L +F+NI++ K E + Q F EGSLF+ L + CA K+ L
Sbjct: 293 FNKKENKEVILKLLVVFENINDNFKWEENESTQNQFSEGSLFFFLKEFQVCADKILGLES 352
Query: 1181 HHDADVKEKV 1210
H D VK KV
Sbjct: 353 HQDFLVKVKV 362
>ref|XP_002699866.1| PREDICTED: armadillo repeat containing, X-linked 3 [Bos taurus].
Length = 379
Score = 235 bits (599), Expect = 7e-62
Identities = 129/250 (51%), Positives = 173/250 (69%), Gaps = 1/250 (0%)
Frame = +2
Query: 464 SYDDILNAEQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQI 643
S D IL+ ++LQK+L L+E +E P I+E AL+ LGNNAA++ N+ IIR+LGG+ IV +
Sbjct: 113 SDDTILSPQELQKVLCLVEMSEKPYILEAALIALGNNAAYAFNRDIIRDLGGLPIVAKIL 172
Query: 644 NNPNQSIKEKXXXXXXXXSVNVENQIKIKVYVNQVCEDVLSGPLNSAVQLAGLRLLTNMT 823
N + +KEK SVN ENQ ++K+Y+NQVC+D ++ LNS+VQLAGLRLLTNMT
Sbjct: 173 NTRDPIVKEKALIVLNNLSVNAENQRRLKIYMNQVCDDTITSRLNSSVQLAGLRLLTNMT 232
Query: 824 VTNDHQHMLSTYIADLFHVLLTGNGSTKVQVLKLLLNLSENPAMTDGLLGAQVDSSFLSL 1003
VTN++QHML+ I+D F + GN TK QVLKLLLNL+ENPAMT LL AQV SS SL
Sbjct: 233 VTNEYQHMLANSISDFFRLFSAGNEETKFQVLKLLLNLAENPAMTRELLRAQVPSSLGSL 292
Query: 1004 FDGHVAKEILVRVLTLFQNIDNCLKKEGRLALQPAFPEGSLFYLLYGDE-CAQKMRALVY 1180
F+ KE+++++L +F+NI++ K E + Q F EGSLF+ L + CA K+ L
Sbjct: 293 FNKKENKEVILKLLVVFENINDNFKWEENESTQNQFSEGSLFFFLKEFQVCADKILGLES 352
Query: 1181 HHDADVKEKV 1210
H D VK KV
Sbjct: 353 HQDFLVKVKV 362
>ref|NP_001068635.1| armadillo repeat-containing X-linked protein 1 [Bos taurus].
Length = 453
Score = 229 bits (583), Expect = 5e-60
Identities = 125/251 (49%), Positives = 166/251 (66%), Gaps = 1/251 (0%)
Frame = +2
Query: 470 DDILNAEQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQINN 649
DDIL A LQK+L +LE + DP I E ALVTLGNNAA+S NQ IRELGG+ I+ I
Sbjct: 199 DDILGATDLQKVLNILERSNDPFIQEVALVTLGNNAAYSFNQNAIRELGGLPIIAKLIKT 258
Query: 650 PNQSIKEKXXXXXXXXSVNVENQIKIKVYVNQVCEDVLSGPLNSAVQLAGLRLLTNMTVT 829
+ I+EK SVN ENQ KIK Y++QVC+D + L+SAVQ+AGLRLLTNMTVT
Sbjct: 259 KDPIIREKAYNALNNLSVNSENQGKIKTYISQVCDDTMICRLDSAVQMAGLRLLTNMTVT 318
Query: 830 NDHQHMLSTYIADLFHVLLTGNGSTKVQVLKLLLNLSENPAMTDGLLGAQVDSSFLSLFD 1009
N +QH+LS D F +L GN TK+Q++KL++N +ENPAMT L+ +V S +SLF+
Sbjct: 319 NHYQHLLSYSFPDFFALLFLGNYFTKIQIMKLIINFTENPAMTRELVSCKVPSELISLFN 378
Query: 1010 GHVAKEILVRVLTLFQNIDNCLKKEGRLALQPAFPEGSLFYLL-YGDECAQKMRALVYHH 1186
+EIL+ +LTLF+NI++ +K EG + + F SLF+L C +K++AL H
Sbjct: 379 KEWDREILLNILTLFENINDNIKNEGLASSRKEFSRSSLFFLFKESGVCVKKIKALANHS 438
Query: 1187 DADVKEKVTMI 1219
D VK KV +
Sbjct: 439 DLVVKVKVLKV 449
>ref|NP_001070428.1| armadillo repeat-containing X-linked protein 2 [Bos taurus].
Length = 609
Score = 213 bits (541), Expect = 4e-55
Identities = 119/255 (46%), Positives = 166/255 (65%), Gaps = 2/255 (0%)
Frame = +2
Query: 470 DDILNAEQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQINN 649
D+IL L+K+L LL+ ++DP I + AL+TL NNA +S NQ IR+LGG+ I+ + IN
Sbjct: 357 DEILGVRDLRKVLALLQKSDDPFIQQVALLTLSNNANYSCNQDTIRKLGGLPIIANMINK 416
Query: 650 PNQSIKEKXXXXXXXXSVNVENQIKIKVYVNQVCEDVLSGPLNSAVQLAGLRLLTNMTVT 829
+ IKEK S N ENQ +++VY+N+V +D+++ LNSAVQ+ GL+ LTNMT+T
Sbjct: 417 TDPHIKEKALMAMNNLSENYENQGRLQVYMNKVMDDIMASNLNSAVQVVGLKFLTNMTIT 476
Query: 830 NDHQHMLSTYIADLFHVLLTGNGSTKVQVLKLLLNLSENPAMTDGLLGAQVDSSFLSLFD 1009
ND+QH+L IA+ F +L G G KV++LK+L N +ENP M LL QV SSF SL++
Sbjct: 477 NDYQHLLVNSIANFFRLLSQGGGKIKVEILKILSNFAENPDMLKKLLSTQVPSSFSSLYN 536
Query: 1010 GHVAKEILVRVLTLFQNIDNCLKKEGRLALQPAFPEGSLFYLLYGD-ECAQKMRALVYHH 1186
+V EIL+ LTLF+ I + L+ E + F +GSLFYL C +K+RAL HH
Sbjct: 537 SYVESEILINALTLFEIIYDNLRAE--VFNYREFNKGSLFYLCTASGVCVKKIRALADHH 594
Query: 1187 DADVKEKV-TMIPKF 1228
D VK KV ++ KF
Sbjct: 595 DLLVKVKVIKLVDKF 609
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,503,374
Number of extensions: 1037945
Number of successful extensions: 3258
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 3230
Number of HSP's successfully gapped: 25
Length of query: 432
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 327
Effective length of database: 14,207,134
Effective search space: 4645732818
Effective search space used: 4645732818
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012691
(1297 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003130287.2| PREDICTED: armadillo repeat-containing prote... 517 e-147
Alignment gi|XP_003357542.1| PREDICTED: armadillo repeat-containing prote... 459 e-129
Alignment gi|XP_003357543.1| PREDICTED: armadillo repeat-containing prote... 363 e-100
Alignment gi|XP_003135302.1| PREDICTED: armadillo repeat-containing X-lin... 231 7e-61
Alignment gi|XP_003135301.1| PREDICTED: armadillo repeat-containing X-lin... 231 7e-61
Alignment gi|XP_003135300.1| PREDICTED: armadillo repeat-containing X-lin... 231 7e-61
Alignment gi|XP_003135299.1| PREDICTED: armadillo repeat-containing X-lin... 231 7e-61
Alignment gi|XP_003357544.1| PREDICTED: armadillo repeat-containing prote... 192 3e-49
Alignment gi|XP_003135303.1| PREDICTED: armadillo repeat-containing X-lin... 177 1e-44
Alignment gi|XP_003135327.2| PREDICTED: LOW QUALITY PROTEIN: armadillo re... 137 1e-32
>ref|XP_003130287.2| PREDICTED: armadillo repeat-containing protein 10-like isoform 1 [Sus
scrofa].
Length = 307
Score = 517 bits (1331), Expect = e-147
Identities = 269/307 (87%), Positives = 269/307 (87%)
Frame = +2
Query: 308 MGGARDVGWXXXXXXXXXXXCYCIYXXXXXXXXXXXXXXXXXXXSAEDLTNGSYDDILNA 487
MGGARDVGW CYCIY SAEDLTNGSYDDILNA
Sbjct: 1 MGGARDVGWVAAGLVLAAGACYCIYRLTRGQRRGARRVGLRPSRSAEDLTNGSYDDILNA 60
Query: 488 EQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQINNPNQSIK 667
EQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQINNPNQSIK
Sbjct: 61 EQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQINNPNQSIK 120
Query: 668 EKXXXXXXXXSVNVENQIKIKVYVNQVCEDVLSGPLNSAVQLAGLRLLTNMTVTNDHQHM 847
EK SVNVENQIKIKVYVNQVCEDVLSGPLNSAVQLAGLRLLTNMTVTNDHQHM
Sbjct: 121 EKALNALNNLSVNVENQIKIKVYVNQVCEDVLSGPLNSAVQLAGLRLLTNMTVTNDHQHM 180
Query: 848 LSTYIADLFHVLLTGNGSTKVQVLKLLLNLSENPAMTDGLLGAQVDSSFLSLFDGHVAKE 1027
LSTYIADLFHVLLTGNGSTKVQVLKLLLNLSENPAMTDGLLGAQVDSSFLSLFDGHVAKE
Sbjct: 181 LSTYIADLFHVLLTGNGSTKVQVLKLLLNLSENPAMTDGLLGAQVDSSFLSLFDGHVAKE 240
Query: 1028 ILVRVLTLFQNIDNCLKKEGRLALQPAFPEGSLFYLLYGDECAQKMRALVYHHDADVKEK 1207
ILVRVLTLFQNIDNCLKKEGRLALQPAFPEGSLFYLLYGDECAQKMRALVYHHDADVKEK
Sbjct: 241 ILVRVLTLFQNIDNCLKKEGRLALQPAFPEGSLFYLLYGDECAQKMRALVYHHDADVKEK 300
Query: 1208 VTMIPKF 1228
VTMIPKF
Sbjct: 301 VTMIPKF 307
>ref|XP_003357542.1| PREDICTED: armadillo repeat-containing protein 10-like isoform 2 [Sus
scrofa].
Length = 283
Score = 459 bits (1181), Expect = e-129
Identities = 245/307 (79%), Positives = 245/307 (79%)
Frame = +2
Query: 308 MGGARDVGWXXXXXXXXXXXCYCIYXXXXXXXXXXXXXXXXXXXSAEDLTNGSYDDILNA 487
MGGARDVGW CYCIY SAEDLTNGSYDDILNA
Sbjct: 1 MGGARDVGWVAAGLVLAAGACYCIYRLTRGQRRGARRVGLRPSRSAEDLTNGSYDDILNA 60
Query: 488 EQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQINNPNQSIK 667
EQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQINNPNQSIK
Sbjct: 61 EQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQINNPNQSIK 120
Query: 668 EKXXXXXXXXSVNVENQIKIKVYVNQVCEDVLSGPLNSAVQLAGLRLLTNMTVTNDHQHM 847
EK SVNVENQIKIKVYVNQVCEDVLSGPLNSAVQLAGLRLLTNMTVTNDHQHM
Sbjct: 121 EKALNALNNLSVNVENQIKIKVYVNQVCEDVLSGPLNSAVQLAGLRLLTNMTVTNDHQHM 180
Query: 848 LSTYIADLFHVLLTGNGSTKVQVLKLLLNLSENPAMTDGLLGAQVDSSFLSLFDGHVAKE 1027
LSTYIADLFHVLLTGNGSTK VDSSFLSLFDGHVAKE
Sbjct: 181 LSTYIADLFHVLLTGNGSTK------------------------VDSSFLSLFDGHVAKE 216
Query: 1028 ILVRVLTLFQNIDNCLKKEGRLALQPAFPEGSLFYLLYGDECAQKMRALVYHHDADVKEK 1207
ILVRVLTLFQNIDNCLKKEGRLALQPAFPEGSLFYLLYGDECAQKMRALVYHHDADVKEK
Sbjct: 217 ILVRVLTLFQNIDNCLKKEGRLALQPAFPEGSLFYLLYGDECAQKMRALVYHHDADVKEK 276
Query: 1208 VTMIPKF 1228
VTMIPKF
Sbjct: 277 VTMIPKF 283
>ref|XP_003357543.1| PREDICTED: armadillo repeat-containing protein 10-like isoform 3 [Sus
scrofa].
Length = 248
Score = 363 bits (932), Expect = e-100
Identities = 205/307 (66%), Positives = 210/307 (68%)
Frame = +2
Query: 308 MGGARDVGWXXXXXXXXXXXCYCIYXXXXXXXXXXXXXXXXXXXSAEDLTNGSYDDILNA 487
MGGARDVGW CYCIY SAEDLTNGSYDDILNA
Sbjct: 1 MGGARDVGWVAAGLVLAAGACYCIYRLTRGQRRGARRVGLRPSRSAEDLTNGSYDDILNA 60
Query: 488 EQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQINNPNQSIK 667
EQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQINNPNQSIK
Sbjct: 61 EQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQINNPNQSIK 120
Query: 668 EKXXXXXXXXSVNVENQIKIKVYVNQVCEDVLSGPLNSAVQLAGLRLLTNMTVTNDHQHM 847
EK L L N++V ++Q
Sbjct: 121 EK-----------------------------------------ALNALNNLSVNVENQIK 139
Query: 848 LSTYIADLFHVLLTGNGSTKVQVLKLLLNLSENPAMTDGLLGAQVDSSFLSLFDGHVAKE 1027
+ KVQVLKLLLNLSENPAMTDGLLGAQVDSSFLSLFDGHVAKE
Sbjct: 140 I------------------KVQVLKLLLNLSENPAMTDGLLGAQVDSSFLSLFDGHVAKE 181
Query: 1028 ILVRVLTLFQNIDNCLKKEGRLALQPAFPEGSLFYLLYGDECAQKMRALVYHHDADVKEK 1207
ILVRVLTLFQNIDNCLKKEGRLALQPAFPEGSLFYLLYGDECAQKMRALVYHHDADVKEK
Sbjct: 182 ILVRVLTLFQNIDNCLKKEGRLALQPAFPEGSLFYLLYGDECAQKMRALVYHHDADVKEK 241
Query: 1208 VTMIPKF 1228
VTMIPKF
Sbjct: 242 VTMIPKF 248
>ref|XP_003135302.1| PREDICTED: armadillo repeat-containing X-linked protein 3 isoform 4
[Sus scrofa].
Length = 379
Score = 231 bits (589), Expect = 7e-61
Identities = 127/250 (50%), Positives = 171/250 (68%), Gaps = 1/250 (0%)
Frame = +2
Query: 464 SYDDILNAEQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQI 643
S D +L+ ++LQK+L L+E +E P I+E AL+ LGNNAA++ N+ IIR+LGG+ IV +
Sbjct: 113 SDDTVLSPQELQKVLCLVEMSEKPYILEAALIALGNNAAYAFNRDIIRDLGGLPIVAKIL 172
Query: 644 NNPNQSIKEKXXXXXXXXSVNVENQIKIKVYVNQVCEDVLSGPLNSAVQLAGLRLLTNMT 823
N + +KEK SVN ENQ ++K+Y+NQVC+D ++ LNS+VQLAGLRLLTNMT
Sbjct: 173 NTRDPIVKEKALIVLNNLSVNAENQRRLKIYMNQVCDDTITSRLNSSVQLAGLRLLTNMT 232
Query: 824 VTNDHQHMLSTYIADLFHVLLTGNGSTKVQVLKLLLNLSENPAMTDGLLGAQVDSSFLSL 1003
VTN++QHML+ I+D F + GN TK QVLKLLLNL+ENPAMT LL AQV SS SL
Sbjct: 233 VTNEYQHMLANSISDFFRLFSAGNEETKFQVLKLLLNLAENPAMTRELLRAQVPSSLGSL 292
Query: 1004 FDGHVAKEILVRVLTLFQNIDNCLKKEGRLALQPAFPEGSLFYLLYGDE-CAQKMRALVY 1180
F+ KE+++++L +F+NI + K E Q F EGSLF+ L + CA K+ +
Sbjct: 293 FNKKENKEVILKLLVIFENIIDNFKWEEDEPTQNQFSEGSLFFFLKEFQVCADKILGIES 352
Query: 1181 HHDADVKEKV 1210
H D VK KV
Sbjct: 353 HQDFLVKVKV 362
>ref|XP_003135301.1| PREDICTED: armadillo repeat-containing X-linked protein 3 isoform 3
[Sus scrofa].
Length = 379
Score = 231 bits (589), Expect = 7e-61
Identities = 127/250 (50%), Positives = 171/250 (68%), Gaps = 1/250 (0%)
Frame = +2
Query: 464 SYDDILNAEQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQI 643
S D +L+ ++LQK+L L+E +E P I+E AL+ LGNNAA++ N+ IIR+LGG+ IV +
Sbjct: 113 SDDTVLSPQELQKVLCLVEMSEKPYILEAALIALGNNAAYAFNRDIIRDLGGLPIVAKIL 172
Query: 644 NNPNQSIKEKXXXXXXXXSVNVENQIKIKVYVNQVCEDVLSGPLNSAVQLAGLRLLTNMT 823
N + +KEK SVN ENQ ++K+Y+NQVC+D ++ LNS+VQLAGLRLLTNMT
Sbjct: 173 NTRDPIVKEKALIVLNNLSVNAENQRRLKIYMNQVCDDTITSRLNSSVQLAGLRLLTNMT 232
Query: 824 VTNDHQHMLSTYIADLFHVLLTGNGSTKVQVLKLLLNLSENPAMTDGLLGAQVDSSFLSL 1003
VTN++QHML+ I+D F + GN TK QVLKLLLNL+ENPAMT LL AQV SS SL
Sbjct: 233 VTNEYQHMLANSISDFFRLFSAGNEETKFQVLKLLLNLAENPAMTRELLRAQVPSSLGSL 292
Query: 1004 FDGHVAKEILVRVLTLFQNIDNCLKKEGRLALQPAFPEGSLFYLLYGDE-CAQKMRALVY 1180
F+ KE+++++L +F+NI + K E Q F EGSLF+ L + CA K+ +
Sbjct: 293 FNKKENKEVILKLLVIFENIIDNFKWEEDEPTQNQFSEGSLFFFLKEFQVCADKILGIES 352
Query: 1181 HHDADVKEKV 1210
H D VK KV
Sbjct: 353 HQDFLVKVKV 362
>ref|XP_003135300.1| PREDICTED: armadillo repeat-containing X-linked protein 3 isoform 2
[Sus scrofa].
Length = 379
Score = 231 bits (589), Expect = 7e-61
Identities = 127/250 (50%), Positives = 171/250 (68%), Gaps = 1/250 (0%)
Frame = +2
Query: 464 SYDDILNAEQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQI 643
S D +L+ ++LQK+L L+E +E P I+E AL+ LGNNAA++ N+ IIR+LGG+ IV +
Sbjct: 113 SDDTVLSPQELQKVLCLVEMSEKPYILEAALIALGNNAAYAFNRDIIRDLGGLPIVAKIL 172
Query: 644 NNPNQSIKEKXXXXXXXXSVNVENQIKIKVYVNQVCEDVLSGPLNSAVQLAGLRLLTNMT 823
N + +KEK SVN ENQ ++K+Y+NQVC+D ++ LNS+VQLAGLRLLTNMT
Sbjct: 173 NTRDPIVKEKALIVLNNLSVNAENQRRLKIYMNQVCDDTITSRLNSSVQLAGLRLLTNMT 232
Query: 824 VTNDHQHMLSTYIADLFHVLLTGNGSTKVQVLKLLLNLSENPAMTDGLLGAQVDSSFLSL 1003
VTN++QHML+ I+D F + GN TK QVLKLLLNL+ENPAMT LL AQV SS SL
Sbjct: 233 VTNEYQHMLANSISDFFRLFSAGNEETKFQVLKLLLNLAENPAMTRELLRAQVPSSLGSL 292
Query: 1004 FDGHVAKEILVRVLTLFQNIDNCLKKEGRLALQPAFPEGSLFYLLYGDE-CAQKMRALVY 1180
F+ KE+++++L +F+NI + K E Q F EGSLF+ L + CA K+ +
Sbjct: 293 FNKKENKEVILKLLVIFENIIDNFKWEEDEPTQNQFSEGSLFFFLKEFQVCADKILGIES 352
Query: 1181 HHDADVKEKV 1210
H D VK KV
Sbjct: 353 HQDFLVKVKV 362
>ref|XP_003135299.1| PREDICTED: armadillo repeat-containing X-linked protein 3 isoform 1
[Sus scrofa].
Length = 379
Score = 231 bits (589), Expect = 7e-61
Identities = 127/250 (50%), Positives = 171/250 (68%), Gaps = 1/250 (0%)
Frame = +2
Query: 464 SYDDILNAEQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQI 643
S D +L+ ++LQK+L L+E +E P I+E AL+ LGNNAA++ N+ IIR+LGG+ IV +
Sbjct: 113 SDDTVLSPQELQKVLCLVEMSEKPYILEAALIALGNNAAYAFNRDIIRDLGGLPIVAKIL 172
Query: 644 NNPNQSIKEKXXXXXXXXSVNVENQIKIKVYVNQVCEDVLSGPLNSAVQLAGLRLLTNMT 823
N + +KEK SVN ENQ ++K+Y+NQVC+D ++ LNS+VQLAGLRLLTNMT
Sbjct: 173 NTRDPIVKEKALIVLNNLSVNAENQRRLKIYMNQVCDDTITSRLNSSVQLAGLRLLTNMT 232
Query: 824 VTNDHQHMLSTYIADLFHVLLTGNGSTKVQVLKLLLNLSENPAMTDGLLGAQVDSSFLSL 1003
VTN++QHML+ I+D F + GN TK QVLKLLLNL+ENPAMT LL AQV SS SL
Sbjct: 233 VTNEYQHMLANSISDFFRLFSAGNEETKFQVLKLLLNLAENPAMTRELLRAQVPSSLGSL 292
Query: 1004 FDGHVAKEILVRVLTLFQNIDNCLKKEGRLALQPAFPEGSLFYLLYGDE-CAQKMRALVY 1180
F+ KE+++++L +F+NI + K E Q F EGSLF+ L + CA K+ +
Sbjct: 293 FNKKENKEVILKLLVIFENIIDNFKWEEDEPTQNQFSEGSLFFFLKEFQVCADKILGIES 352
Query: 1181 HHDADVKEKV 1210
H D VK KV
Sbjct: 353 HQDFLVKVKV 362
>ref|XP_003357544.1| PREDICTED: armadillo repeat-containing protein 10-like isoform 4
[Sus scrofa].
Length = 224
Score = 192 bits (488), Expect = 3e-49
Identities = 104/142 (73%), Positives = 104/142 (73%)
Frame = +2
Query: 308 MGGARDVGWXXXXXXXXXXXCYCIYXXXXXXXXXXXXXXXXXXXSAEDLTNGSYDDILNA 487
MGGARDVGW CYCIY SAEDLTNGSYDDILNA
Sbjct: 1 MGGARDVGWVAAGLVLAAGACYCIYRLTRGQRRGARRVGLRPSRSAEDLTNGSYDDILNA 60
Query: 488 EQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQINNPNQSIK 667
EQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQINNPNQSIK
Sbjct: 61 EQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQINNPNQSIK 120
Query: 668 EKXXXXXXXXSVNVENQIKIKV 733
EK SVNVENQIKIKV
Sbjct: 121 EKALNALNNLSVNVENQIKIKV 142
Score = 177 bits (449), Expect = 1e-44
Identities = 92/112 (82%), Positives = 96/112 (85%)
Frame = +2
Query: 893 NGSTKVQVLKLLLNLSENPAMTDGLLGAQVDSSFLSLFDGHVAKEILVRVLTLFQNIDNC 1072
N S K + L L NLS N + + +VDSSFLSLFDGHVAKEILVRVLTLFQNIDNC
Sbjct: 116 NQSIKEKALNALNNLSVN---VENQIKIKVDSSFLSLFDGHVAKEILVRVLTLFQNIDNC 172
Query: 1073 LKKEGRLALQPAFPEGSLFYLLYGDECAQKMRALVYHHDADVKEKVTMIPKF 1228
LKKEGRLALQPAFPEGSLFYLLYGDECAQKMRALVYHHDADVKEKVTMIPKF
Sbjct: 173 LKKEGRLALQPAFPEGSLFYLLYGDECAQKMRALVYHHDADVKEKVTMIPKF 224
>ref|XP_003135303.1| PREDICTED: armadillo repeat-containing X-linked protein 2 [Sus
scrofa].
Length = 620
Score = 177 bits (449), Expect = 1e-44
Identities = 107/255 (41%), Positives = 152/255 (59%), Gaps = 2/255 (0%)
Frame = +2
Query: 470 DDILNAEQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQINN 649
D+IL L+K+L LL+ ++DP I + AL+TL NNA +S NQ IR+LGG+ I+ + I+
Sbjct: 392 DEILGVRDLRKVLALLQKSDDPFIQQVALLTLSNNANYSCNQDTIRKLGGLPIIANMIHK 451
Query: 650 PNQSIKEKXXXXXXXXSVNVENQIKIKVYVNQVCEDVLSGPLNSAVQLAGLRLLTNMTVT 829
+ IKEK S N ENQ +++VY+N+V +D+++ LNSAVQ+ GL+ LTNMT+T
Sbjct: 452 TDPHIKEKALMAMNNLSENYENQGRLQVYMNKVMDDIMASNLNSAVQVVGLKFLTNMTIT 511
Query: 830 NDHQHMLSTYIADLFHVLLTGNGSTKVQVLKLLLNLSENPAMTDGLLGAQVDSSFLSLFD 1009
ND+QH+L IA+ F +L G G+T QV SSF SL++
Sbjct: 512 NDYQHLLVNSIANFFRLLSQGGGNT------------------------QVPSSFSSLYN 547
Query: 1010 GHVAKEILVRVLTLFQNIDNCLKKEGRLALQPAFPEGSLFYLLYGD-ECAQKMRALVYHH 1186
+V EIL+ LTLF+ I + L+ E + F +GSLFYL C +K+RAL HH
Sbjct: 548 SYVESEILINALTLFEIIYDNLRAE--VFNYREFNKGSLFYLCTASGVCVKKIRALADHH 605
Query: 1187 DADVKEKV-TMIPKF 1228
D VK KV ++ KF
Sbjct: 606 DLLVKVKVIKLVDKF 620
>ref|XP_003135327.2| PREDICTED: LOW QUALITY PROTEIN: armadillo repeat-containing X-linked
protein 5-like [Sus scrofa].
Length = 732
Score = 137 bits (345), Expect = 1e-32
Identities = 82/245 (33%), Positives = 138/245 (56%), Gaps = 1/245 (0%)
Frame = +2
Query: 479 LNAEQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQINNPNQ 658
L ++ KL+ LL+ T DP I + A + +G + A+ Q II ++G ++ + +NNPN
Sbjct: 481 LEPKEFDKLVALLKLTRDPFIHQIATMIMGISPAYPFTQDIIHDVGITVMIENLVNNPNV 540
Query: 659 SIKEKXXXXXXXXSVNVENQIKIKVYVNQVCEDVLSGPLNSAVQLAGLRLLTNMTVTNDH 838
+ S + ++YVNQVC++++S PLNS VQLAGL+LL ++V +
Sbjct: 541 IEHPRALNKVDDNSGSSGQPKTGELYVNQVCKEIISSPLNSPVQLAGLKLLVQLSVKFED 600
Query: 839 QHMLSTYIADLFHVLLTGNGSTKVQVLKLLLNLSENPAMTDGLLGAQVDSSFLSLFDGHV 1018
HM+ YI D +L G+ TK VLK+ LS+N A T L+ A+V SS ++ F+ +
Sbjct: 601 HHMIINYIPDFLTLLNKGSVKTKFYVLKVFSRLSKNQANTRELISAKVLSSLVAPFNKNE 660
Query: 1019 AKEILVRVLTLFQNIDNCLKKEGRLALQPAFPEGSLFYLLY-GDECAQKMRALVYHHDAD 1195
+K ++ ++ +F+NI+ KK+ +L + F + L + E QK++ L H D +
Sbjct: 661 SKANILNIIEIFENINFQFKKKVKLFTKEEFTKSELISIFQEAKEFGQKLQDLAEHSDPE 720
Query: 1196 VKEKV 1210
V++KV
Sbjct: 721 VRDKV 725
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,406,817
Number of extensions: 666932
Number of successful extensions: 2160
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 2135
Number of HSP's successfully gapped: 19
Length of query: 432
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 330
Effective length of database: 8,804,438
Effective search space: 2905464540
Effective search space used: 2905464540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012691
(1297 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080310.1| armadillo repeat-containing protein 10 [Mus mus... 413 e-115
Alignment gi|NP_082146.2| armadillo repeat-containing X-linked protein 3 ... 234 1e-61
Alignment gi|NP_001159852.1| armadillo repeat-containing X-linked protein... 228 8e-60
Alignment gi|NP_001159851.1| armadillo repeat-containing X-linked protein... 228 8e-60
Alignment gi|NP_001159850.1| armadillo repeat-containing X-linked protein... 228 8e-60
Alignment gi|NP_084342.1| armadillo repeat-containing X-linked protein 1 ... 228 8e-60
Alignment gi|NP_001159849.1| armadillo repeat-containing X-linked protein... 228 8e-60
Alignment gi|NP_001159870.1| armadillo repeat-containing X-linked protein... 215 7e-56
Alignment gi|NP_001159869.1| armadillo repeat-containing X-linked protein... 215 7e-56
Alignment gi|NP_080415.3| armadillo repeat-containing X-linked protein 2 ... 215 7e-56
>ref|NP_080310.1| armadillo repeat-containing protein 10 [Mus musculus].
Length = 306
Score = 413 bits (1061), Expect = e-115
Identities = 221/308 (71%), Positives = 240/308 (77%), Gaps = 1/308 (0%)
Frame = +2
Query: 308 MGGARDVGWXXXXXXXXXXXCYCIYXXXXXXXXXXXXXXXXXXXSAEDLTNGSYDDILNA 487
MGGARDVGW CYCIY SAEDLT+GSYDDILNA
Sbjct: 1 MGGARDVGWVAAGLVLGAGACYCIYRLTRGPRRGGRRLRPSR--SAEDLTDGSYDDILNA 58
Query: 488 EQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQINNPNQSIK 667
EQL+KLLYLLEST+DPVI EKALVTLGNNAAFS NQ IIRELGGI IVG++IN+ NQSIK
Sbjct: 59 EQLKKLLYLLESTDDPVITEKALVTLGNNAAFSTNQAIIRELGGIPIVGNKINSLNQSIK 118
Query: 668 EKXXXXXXXXSVNVENQIKIKVYVNQVCEDVLSGPLNSAVQLAGLRLLTNMTVTNDHQHM 847
EK SVNVENQ KIK+YV QVCEDV + PLNSAVQLAGLRLLTNMTVTND+QH+
Sbjct: 119 EKALNALNNLSVNVENQTKIKIYVPQVCEDVFADPLNSAVQLAGLRLLTNMTVTNDYQHL 178
Query: 848 LSTYIADLFHVLLTGNGSTKVQVLKLLLNLSENPAMTDGLLGAQVDSSFLSLFDGHVAKE 1027
LS +A LFH+LL GNGSTKVQVLKLLLNLSENPAMT+GLL QVDSSFLSL+DG VA E
Sbjct: 179 LSGSVAGLFHLLLLGNGSTKVQVLKLLLNLSENPAMTEGLLSVQVDSSFLSLYDGQVANE 238
Query: 1028 ILVRVLTLFQNIDNCLKKEGRLALQPAFPEGSLFYLLYGDECAQKMRALVYHHDADVKEK 1207
IL+R LTLFQNI+NCLK EGRLA Q F +GSLF+LLYG+ECAQKMRAL HHD DVKEK
Sbjct: 239 ILLRALTLFQNINNCLKVEGRLANQIPFAKGSLFFLLYGEECAQKMRALACHHDVDVKEK 298
Query: 1208 VTMI-PKF 1228
I PKF
Sbjct: 299 ALAIKPKF 306
>ref|NP_082146.2| armadillo repeat-containing X-linked protein 3 [Mus musculus].
Length = 379
Score = 234 bits (596), Expect = 1e-61
Identities = 132/267 (49%), Positives = 181/267 (67%), Gaps = 2/267 (0%)
Frame = +2
Query: 464 SYDDILNAEQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQI 643
S D +L+ ++LQK+L L+E +E P I+E AL+ LGNNAA++ N+ IIR+LGG+ IV +
Sbjct: 113 SDDTVLSPQELQKVLCLVEMSEKPYILEAALIALGNNAAYAFNRDIIRDLGGLPIVAKIL 172
Query: 644 NNPNQSIKEKXXXXXXXXSVNVENQIKIKVYVNQVCEDVLSGPLNSAVQLAGLRLLTNMT 823
N + +KEK SVN ENQ ++KVY+NQVC+D ++ LNS+VQLAGLRLLTNMT
Sbjct: 173 NTRDPIVKEKALIVLNNLSVNAENQRRLKVYMNQVCDDTVTSRLNSSVQLAGLRLLTNMT 232
Query: 824 VTNDHQHMLSTYIADLFHVLLTGNGSTKVQVLKLLLNLSENPAMTDGLLGAQVDSSFLSL 1003
VTN++QH+L+ I+D F + GN TK+QVLKLLLNL+ENPAMT LL AQV SS SL
Sbjct: 233 VTNEYQHILANSISDFFRLFSAGNEETKLQVLKLLLNLAENPAMTRELLRAQVPSSLGSL 292
Query: 1004 FDGHVAKEILVRVLTLFQNIDNCLKKEGRLALQPAFPEGSLFYLLYGDE-CAQKMRALVY 1180
F+ KE+++++L +F+NI++ K E Q F EGSLF+ L + CA K+ +
Sbjct: 293 FNKKEYKEVILKLLIIFENINDNFKWEENEPAQNHFSEGSLFFFLKEFQVCADKVLGIES 352
Query: 1181 HHDADVKEKV-TMIPKF*LVGRVFPGS 1258
HD V+ KV + K L R+FP S
Sbjct: 353 RHDFQVRVKVGKFVAK--LTERMFPKS 377
>ref|NP_001159852.1| armadillo repeat-containing X-linked protein 1 [Mus musculus].
Length = 456
Score = 228 bits (581), Expect = 8e-60
Identities = 125/251 (49%), Positives = 165/251 (65%), Gaps = 1/251 (0%)
Frame = +2
Query: 470 DDILNAEQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQINN 649
DDIL+A LQK+L +LE T DP E ALVTLGNNAA+S NQ IRELGG+ I+ I
Sbjct: 202 DDILSAPDLQKVLNILERTNDPFTQEVALVTLGNNAAYSFNQNAIRELGGVPIIAKLIKT 261
Query: 650 PNQSIKEKXXXXXXXXSVNVENQIKIKVYVNQVCEDVLSGPLNSAVQLAGLRLLTNMTVT 829
+ I+EK SVN ENQ KIK Y++QVC+D + L+SAVQ+AGLRLLTNMTVT
Sbjct: 262 RDPIIREKTYNALNNLSVNSENQGKIKTYISQVCDDTMVCRLDSAVQMAGLRLLTNMTVT 321
Query: 830 NDHQHMLSTYIADLFHVLLTGNGSTKVQVLKLLLNLSENPAMTDGLLGAQVDSSFLSLFD 1009
N +QH+LS D F +L GN TK+Q +KL++N +ENPAMT L+ +V S +SLF+
Sbjct: 322 NHYQHLLSYSFPDFFALLFLGNHFTKIQTMKLIINFTENPAMTRELVSCKVPSELISLFN 381
Query: 1010 GHVAKEILVRVLTLFQNIDNCLKKEGRLALQPAFPEGSLFYLL-YGDECAQKMRALVYHH 1186
+EIL+ +LTLF+NI++ +K EG + + F SLF+L C +K++AL H
Sbjct: 382 KEWDREILLNILTLFENINDNIKSEGLASSRKEFSRSSLFFLFKESGVCVKKIKALASHK 441
Query: 1187 DADVKEKVTMI 1219
D VK KV +
Sbjct: 442 DLVVKVKVLKV 452
>ref|NP_001159851.1| armadillo repeat-containing X-linked protein 1 [Mus musculus].
Length = 456
Score = 228 bits (581), Expect = 8e-60
Identities = 125/251 (49%), Positives = 165/251 (65%), Gaps = 1/251 (0%)
Frame = +2
Query: 470 DDILNAEQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQINN 649
DDIL+A LQK+L +LE T DP E ALVTLGNNAA+S NQ IRELGG+ I+ I
Sbjct: 202 DDILSAPDLQKVLNILERTNDPFTQEVALVTLGNNAAYSFNQNAIRELGGVPIIAKLIKT 261
Query: 650 PNQSIKEKXXXXXXXXSVNVENQIKIKVYVNQVCEDVLSGPLNSAVQLAGLRLLTNMTVT 829
+ I+EK SVN ENQ KIK Y++QVC+D + L+SAVQ+AGLRLLTNMTVT
Sbjct: 262 RDPIIREKTYNALNNLSVNSENQGKIKTYISQVCDDTMVCRLDSAVQMAGLRLLTNMTVT 321
Query: 830 NDHQHMLSTYIADLFHVLLTGNGSTKVQVLKLLLNLSENPAMTDGLLGAQVDSSFLSLFD 1009
N +QH+LS D F +L GN TK+Q +KL++N +ENPAMT L+ +V S +SLF+
Sbjct: 322 NHYQHLLSYSFPDFFALLFLGNHFTKIQTMKLIINFTENPAMTRELVSCKVPSELISLFN 381
Query: 1010 GHVAKEILVRVLTLFQNIDNCLKKEGRLALQPAFPEGSLFYLL-YGDECAQKMRALVYHH 1186
+EIL+ +LTLF+NI++ +K EG + + F SLF+L C +K++AL H
Sbjct: 382 KEWDREILLNILTLFENINDNIKSEGLASSRKEFSRSSLFFLFKESGVCVKKIKALASHK 441
Query: 1187 DADVKEKVTMI 1219
D VK KV +
Sbjct: 442 DLVVKVKVLKV 452
>ref|NP_001159850.1| armadillo repeat-containing X-linked protein 1 [Mus musculus].
Length = 456
Score = 228 bits (581), Expect = 8e-60
Identities = 125/251 (49%), Positives = 165/251 (65%), Gaps = 1/251 (0%)
Frame = +2
Query: 470 DDILNAEQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQINN 649
DDIL+A LQK+L +LE T DP E ALVTLGNNAA+S NQ IRELGG+ I+ I
Sbjct: 202 DDILSAPDLQKVLNILERTNDPFTQEVALVTLGNNAAYSFNQNAIRELGGVPIIAKLIKT 261
Query: 650 PNQSIKEKXXXXXXXXSVNVENQIKIKVYVNQVCEDVLSGPLNSAVQLAGLRLLTNMTVT 829
+ I+EK SVN ENQ KIK Y++QVC+D + L+SAVQ+AGLRLLTNMTVT
Sbjct: 262 RDPIIREKTYNALNNLSVNSENQGKIKTYISQVCDDTMVCRLDSAVQMAGLRLLTNMTVT 321
Query: 830 NDHQHMLSTYIADLFHVLLTGNGSTKVQVLKLLLNLSENPAMTDGLLGAQVDSSFLSLFD 1009
N +QH+LS D F +L GN TK+Q +KL++N +ENPAMT L+ +V S +SLF+
Sbjct: 322 NHYQHLLSYSFPDFFALLFLGNHFTKIQTMKLIINFTENPAMTRELVSCKVPSELISLFN 381
Query: 1010 GHVAKEILVRVLTLFQNIDNCLKKEGRLALQPAFPEGSLFYLL-YGDECAQKMRALVYHH 1186
+EIL+ +LTLF+NI++ +K EG + + F SLF+L C +K++AL H
Sbjct: 382 KEWDREILLNILTLFENINDNIKSEGLASSRKEFSRSSLFFLFKESGVCVKKIKALASHK 441
Query: 1187 DADVKEKVTMI 1219
D VK KV +
Sbjct: 442 DLVVKVKVLKV 452
>ref|NP_084342.1| armadillo repeat-containing X-linked protein 1 [Mus musculus].
Length = 456
Score = 228 bits (581), Expect = 8e-60
Identities = 125/251 (49%), Positives = 165/251 (65%), Gaps = 1/251 (0%)
Frame = +2
Query: 470 DDILNAEQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQINN 649
DDIL+A LQK+L +LE T DP E ALVTLGNNAA+S NQ IRELGG+ I+ I
Sbjct: 202 DDILSAPDLQKVLNILERTNDPFTQEVALVTLGNNAAYSFNQNAIRELGGVPIIAKLIKT 261
Query: 650 PNQSIKEKXXXXXXXXSVNVENQIKIKVYVNQVCEDVLSGPLNSAVQLAGLRLLTNMTVT 829
+ I+EK SVN ENQ KIK Y++QVC+D + L+SAVQ+AGLRLLTNMTVT
Sbjct: 262 RDPIIREKTYNALNNLSVNSENQGKIKTYISQVCDDTMVCRLDSAVQMAGLRLLTNMTVT 321
Query: 830 NDHQHMLSTYIADLFHVLLTGNGSTKVQVLKLLLNLSENPAMTDGLLGAQVDSSFLSLFD 1009
N +QH+LS D F +L GN TK+Q +KL++N +ENPAMT L+ +V S +SLF+
Sbjct: 322 NHYQHLLSYSFPDFFALLFLGNHFTKIQTMKLIINFTENPAMTRELVSCKVPSELISLFN 381
Query: 1010 GHVAKEILVRVLTLFQNIDNCLKKEGRLALQPAFPEGSLFYLL-YGDECAQKMRALVYHH 1186
+EIL+ +LTLF+NI++ +K EG + + F SLF+L C +K++AL H
Sbjct: 382 KEWDREILLNILTLFENINDNIKSEGLASSRKEFSRSSLFFLFKESGVCVKKIKALASHK 441
Query: 1187 DADVKEKVTMI 1219
D VK KV +
Sbjct: 442 DLVVKVKVLKV 452
>ref|NP_001159849.1| armadillo repeat-containing X-linked protein 1 [Mus musculus].
Length = 456
Score = 228 bits (581), Expect = 8e-60
Identities = 125/251 (49%), Positives = 165/251 (65%), Gaps = 1/251 (0%)
Frame = +2
Query: 470 DDILNAEQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQINN 649
DDIL+A LQK+L +LE T DP E ALVTLGNNAA+S NQ IRELGG+ I+ I
Sbjct: 202 DDILSAPDLQKVLNILERTNDPFTQEVALVTLGNNAAYSFNQNAIRELGGVPIIAKLIKT 261
Query: 650 PNQSIKEKXXXXXXXXSVNVENQIKIKVYVNQVCEDVLSGPLNSAVQLAGLRLLTNMTVT 829
+ I+EK SVN ENQ KIK Y++QVC+D + L+SAVQ+AGLRLLTNMTVT
Sbjct: 262 RDPIIREKTYNALNNLSVNSENQGKIKTYISQVCDDTMVCRLDSAVQMAGLRLLTNMTVT 321
Query: 830 NDHQHMLSTYIADLFHVLLTGNGSTKVQVLKLLLNLSENPAMTDGLLGAQVDSSFLSLFD 1009
N +QH+LS D F +L GN TK+Q +KL++N +ENPAMT L+ +V S +SLF+
Sbjct: 322 NHYQHLLSYSFPDFFALLFLGNHFTKIQTMKLIINFTENPAMTRELVSCKVPSELISLFN 381
Query: 1010 GHVAKEILVRVLTLFQNIDNCLKKEGRLALQPAFPEGSLFYLL-YGDECAQKMRALVYHH 1186
+EIL+ +LTLF+NI++ +K EG + + F SLF+L C +K++AL H
Sbjct: 382 KEWDREILLNILTLFENINDNIKSEGLASSRKEFSRSSLFFLFKESGVCVKKIKALASHK 441
Query: 1187 DADVKEKVTMI 1219
D VK KV +
Sbjct: 442 DLVVKVKVLKV 452
>ref|NP_001159870.1| armadillo repeat-containing X-linked protein 2 [Mus musculus].
Length = 784
Score = 215 bits (547), Expect = 7e-56
Identities = 120/255 (47%), Positives = 167/255 (65%), Gaps = 2/255 (0%)
Frame = +2
Query: 470 DDILNAEQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQINN 649
D+IL L+K+L LL+ ++DP I + AL+TL NNA +S NQ IR+LGG+ I+ + IN
Sbjct: 532 DEILGVRDLRKVLALLQKSDDPFIQQVALLTLSNNANYSCNQETIRKLGGLPIIANMINK 591
Query: 650 PNQSIKEKXXXXXXXXSVNVENQIKIKVYVNQVCEDVLSGPLNSAVQLAGLRLLTNMTVT 829
+ IKEK S N ENQ +++VY+N+V +D+++ LNSAVQ+ GL+ LTNMT+T
Sbjct: 592 TDPHIKEKALMAMNNLSENYENQGRLQVYMNKVMDDIMASNLNSAVQVVGLKFLTNMTIT 651
Query: 830 NDHQHMLSTYIADLFHVLLTGNGSTKVQVLKLLLNLSENPAMTDGLLGAQVDSSFLSLFD 1009
ND+QH+L IA+ F +L G G KV++LK+L N +ENP M LLG QV SSF SL++
Sbjct: 652 NDYQHLLVNSIANFFRLLSQGGGKIKVEILKILSNFAENPDMLKKLLGTQVPSSFSSLYN 711
Query: 1010 GHVAKEILVRVLTLFQNIDNCLKKEGRLALQPAFPEGSLFYL-LYGDECAQKMRALVYHH 1186
+V EIL+ LTLF+ I + L+ E + F +GSLFYL C +K+RAL HH
Sbjct: 712 SYVESEILINALTLFEIIFDNLRAE--VFNYREFNKGSLFYLCTTSGVCVKKIRALANHH 769
Query: 1187 DADVKEKV-TMIPKF 1228
D VK KV ++ KF
Sbjct: 770 DLLVKVKVIKLVNKF 784
>ref|NP_001159869.1| armadillo repeat-containing X-linked protein 2 [Mus musculus].
Length = 784
Score = 215 bits (547), Expect = 7e-56
Identities = 120/255 (47%), Positives = 167/255 (65%), Gaps = 2/255 (0%)
Frame = +2
Query: 470 DDILNAEQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQINN 649
D+IL L+K+L LL+ ++DP I + AL+TL NNA +S NQ IR+LGG+ I+ + IN
Sbjct: 532 DEILGVRDLRKVLALLQKSDDPFIQQVALLTLSNNANYSCNQETIRKLGGLPIIANMINK 591
Query: 650 PNQSIKEKXXXXXXXXSVNVENQIKIKVYVNQVCEDVLSGPLNSAVQLAGLRLLTNMTVT 829
+ IKEK S N ENQ +++VY+N+V +D+++ LNSAVQ+ GL+ LTNMT+T
Sbjct: 592 TDPHIKEKALMAMNNLSENYENQGRLQVYMNKVMDDIMASNLNSAVQVVGLKFLTNMTIT 651
Query: 830 NDHQHMLSTYIADLFHVLLTGNGSTKVQVLKLLLNLSENPAMTDGLLGAQVDSSFLSLFD 1009
ND+QH+L IA+ F +L G G KV++LK+L N +ENP M LLG QV SSF SL++
Sbjct: 652 NDYQHLLVNSIANFFRLLSQGGGKIKVEILKILSNFAENPDMLKKLLGTQVPSSFSSLYN 711
Query: 1010 GHVAKEILVRVLTLFQNIDNCLKKEGRLALQPAFPEGSLFYL-LYGDECAQKMRALVYHH 1186
+V EIL+ LTLF+ I + L+ E + F +GSLFYL C +K+RAL HH
Sbjct: 712 SYVESEILINALTLFEIIFDNLRAE--VFNYREFNKGSLFYLCTTSGVCVKKIRALANHH 769
Query: 1187 DADVKEKV-TMIPKF 1228
D VK KV ++ KF
Sbjct: 770 DLLVKVKVIKLVNKF 784
>ref|NP_080415.3| armadillo repeat-containing X-linked protein 2 [Mus musculus].
Length = 784
Score = 215 bits (547), Expect = 7e-56
Identities = 120/255 (47%), Positives = 167/255 (65%), Gaps = 2/255 (0%)
Frame = +2
Query: 470 DDILNAEQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQINN 649
D+IL L+K+L LL+ ++DP I + AL+TL NNA +S NQ IR+LGG+ I+ + IN
Sbjct: 532 DEILGVRDLRKVLALLQKSDDPFIQQVALLTLSNNANYSCNQETIRKLGGLPIIANMINK 591
Query: 650 PNQSIKEKXXXXXXXXSVNVENQIKIKVYVNQVCEDVLSGPLNSAVQLAGLRLLTNMTVT 829
+ IKEK S N ENQ +++VY+N+V +D+++ LNSAVQ+ GL+ LTNMT+T
Sbjct: 592 TDPHIKEKALMAMNNLSENYENQGRLQVYMNKVMDDIMASNLNSAVQVVGLKFLTNMTIT 651
Query: 830 NDHQHMLSTYIADLFHVLLTGNGSTKVQVLKLLLNLSENPAMTDGLLGAQVDSSFLSLFD 1009
ND+QH+L IA+ F +L G G KV++LK+L N +ENP M LLG QV SSF SL++
Sbjct: 652 NDYQHLLVNSIANFFRLLSQGGGKIKVEILKILSNFAENPDMLKKLLGTQVPSSFSSLYN 711
Query: 1010 GHVAKEILVRVLTLFQNIDNCLKKEGRLALQPAFPEGSLFYL-LYGDECAQKMRALVYHH 1186
+V EIL+ LTLF+ I + L+ E + F +GSLFYL C +K+RAL HH
Sbjct: 712 SYVESEILINALTLFEIIFDNLRAE--VFNYREFNKGSLFYLCTTSGVCVKKIRALANHH 769
Query: 1187 DADVKEKV-TMIPKF 1228
D VK KV ++ KF
Sbjct: 770 DLLVKVKVIKLVNKF 784
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,907,111
Number of extensions: 887537
Number of successful extensions: 2598
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 2582
Number of HSP's successfully gapped: 25
Length of query: 432
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 328
Effective length of database: 12,493,815
Effective search space: 4097971320
Effective search space used: 4097971320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012691
(1297 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001154481.1| armadillo repeat-containing protein 10 isofo... 432 e-121
Alignment gi|NP_114111.2| armadillo repeat-containing protein 10 isoform ... 415 e-116
Alignment gi|NP_001154483.1| armadillo repeat-containing protein 10 isofo... 379 e-105
Alignment gi|NP_001154484.1| armadillo repeat-containing protein 10 isofo... 295 5e-80
Alignment gi|NP_001154482.1| armadillo repeat-containing protein 10 isofo... 278 1e-74
Alignment gi|NP_808817.1| armadillo repeat-containing X-linked protein 3 ... 237 2e-62
Alignment gi|NP_808816.1| armadillo repeat-containing X-linked protein 3 ... 237 2e-62
Alignment gi|NP_057691.1| armadillo repeat-containing X-linked protein 3 ... 237 2e-62
Alignment gi|NP_057692.1| armadillo repeat-containing X-linked protein 1 ... 233 3e-61
Alignment gi|NP_055597.1| armadillo repeat-containing X-linked protein 2 ... 211 9e-55
>ref|NP_001154481.1| armadillo repeat-containing protein 10 isoform b [Homo sapiens].
Length = 308
Score = 432 bits (1112), Expect = e-121
Identities = 225/307 (73%), Positives = 247/307 (80%), Gaps = 1/307 (0%)
Frame = +2
Query: 308 MGGARDVGWXXXXXXXXXXXCYCIYXXXXXXXXXXXXXXXXXXXSAEDLTNGSYDDILNA 487
MGG R GW CYCIY SAEDLT+GSYDD+LNA
Sbjct: 1 MGGPRGAGWVAAGLLLGAGACYCIYRLTRGRRRGDRELGIRSSKSAEDLTDGSYDDVLNA 60
Query: 488 EQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQINNPNQSIK 667
EQLQKLLYLLESTEDPVIIE+AL+TLGNNAAFS NQ IIRELGGI IV ++IN+ NQSIK
Sbjct: 61 EQLQKLLYLLESTEDPVIIERALITLGNNAAFSVNQAIIRELGGIPIVANKINHSNQSIK 120
Query: 668 EKXXXXXXXXSVNVENQIKIKVYVNQVCEDVLSGPLNSAVQLAGLRLLTNMTVTNDHQHM 847
EK SVNVENQIKIK+Y++QVCEDV SGPLNSAVQLAGL LLTNMTVTNDHQHM
Sbjct: 121 EKALNALNNLSVNVENQIKIKIYISQVCEDVFSGPLNSAVQLAGLTLLTNMTVTNDHQHM 180
Query: 848 LSTYIADLFHVLLTGNGSTKVQVLKLLLNLSENPAMTDGLLGAQVDSSFLSLFDGHVAKE 1027
L +YI DLF VLLTGNG+TKVQVLKLLLNLSENPAMT+GLL AQVDSSFLSL+D HVAKE
Sbjct: 181 LHSYITDLFQVLLTGNGNTKVQVLKLLLNLSENPAMTEGLLRAQVDSSFLSLYDSHVAKE 240
Query: 1028 ILVRVLTLFQNIDNCLKKEGRLALQPAFPEGSLFYLLYGDECAQKMRALVYHHDADVKEK 1207
IL+RVLTLFQNI NCLK EG LA+QP F EGSLF+LL+G+ECAQK+RALV HHDA+VKEK
Sbjct: 241 ILLRVLTLFQNIKNCLKIEGHLAVQPTFTEGSLFFLLHGEECAQKIRALVDHHDAEVKEK 300
Query: 1208 -VTMIPK 1225
VT+IPK
Sbjct: 301 VVTIIPK 307
>ref|NP_114111.2| armadillo repeat-containing protein 10 isoform a [Homo sapiens].
Length = 343
Score = 415 bits (1066), Expect = e-116
Identities = 225/342 (65%), Positives = 247/342 (72%), Gaps = 36/342 (10%)
Frame = +2
Query: 308 MGGARDVGWXXXXXXXXXXXCYCIYXXXXXXXXXXXXXXXXXXXSA-------------- 445
MGG R GW CYCIY SA
Sbjct: 1 MGGPRGAGWVAAGLLLGAGACYCIYRLTRGRRRGDRELGIRSSKSAGALEEGTSEGQLCG 60
Query: 446 ---------------------EDLTNGSYDDILNAEQLQKLLYLLESTEDPVIIEKALVT 562
EDLT+GSYDD+LNAEQLQKLLYLLESTEDPVIIE+AL+T
Sbjct: 61 RSARPQTGGTWESQWSKTSQPEDLTDGSYDDVLNAEQLQKLLYLLESTEDPVIIERALIT 120
Query: 563 LGNNAAFSANQVIIRELGGITIVGSQINNPNQSIKEKXXXXXXXXSVNVENQIKIKVYVN 742
LGNNAAFS NQ IIRELGGI IV ++IN+ NQSIKEK SVNVENQIKIK+Y++
Sbjct: 121 LGNNAAFSVNQAIIRELGGIPIVANKINHSNQSIKEKALNALNNLSVNVENQIKIKIYIS 180
Query: 743 QVCEDVLSGPLNSAVQLAGLRLLTNMTVTNDHQHMLSTYIADLFHVLLTGNGSTKVQVLK 922
QVCEDV SGPLNSAVQLAGL LLTNMTVTNDHQHML +YI DLF VLLTGNG+TKVQVLK
Sbjct: 181 QVCEDVFSGPLNSAVQLAGLTLLTNMTVTNDHQHMLHSYITDLFQVLLTGNGNTKVQVLK 240
Query: 923 LLLNLSENPAMTDGLLGAQVDSSFLSLFDGHVAKEILVRVLTLFQNIDNCLKKEGRLALQ 1102
LLLNLSENPAMT+GLL AQVDSSFLSL+D HVAKEIL+RVLTLFQNI NCLK EG LA+Q
Sbjct: 241 LLLNLSENPAMTEGLLRAQVDSSFLSLYDSHVAKEILLRVLTLFQNIKNCLKIEGHLAVQ 300
Query: 1103 PAFPEGSLFYLLYGDECAQKMRALVYHHDADVKEK-VTMIPK 1225
P F EGSLF+LL+G+ECAQK+RALV HHDA+VKEK VT+IPK
Sbjct: 301 PTFTEGSLFFLLHGEECAQKIRALVDHHDAEVKEKVVTIIPK 342
>ref|NP_001154483.1| armadillo repeat-containing protein 10 isoform e [Homo sapiens].
Length = 284
Score = 379 bits (974), Expect = e-105
Identities = 203/307 (66%), Positives = 224/307 (72%), Gaps = 1/307 (0%)
Frame = +2
Query: 308 MGGARDVGWXXXXXXXXXXXCYCIYXXXXXXXXXXXXXXXXXXXSAEDLTNGSYDDILNA 487
MGG R GW CYCIY SAEDLT+GSYDD+LNA
Sbjct: 1 MGGPRGAGWVAAGLLLGAGACYCIYRLTRGRRRGDRELGIRSSKSAEDLTDGSYDDVLNA 60
Query: 488 EQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQINNPNQSIK 667
EQLQKLLYLLESTEDPVIIE+AL+TLGNNAAFS NQ IIRELGGI IV ++IN+ NQSIK
Sbjct: 61 EQLQKLLYLLESTEDPVIIERALITLGNNAAFSVNQAIIRELGGIPIVANKINHSNQSIK 120
Query: 668 EKXXXXXXXXSVNVENQIKIKVYVNQVCEDVLSGPLNSAVQLAGLRLLTNMTVTNDHQHM 847
EK SVNVENQIKIK+Y++QVCEDV SGPLNSAVQLAGL LLTNMTVTNDHQHM
Sbjct: 121 EKALNALNNLSVNVENQIKIKIYISQVCEDVFSGPLNSAVQLAGLTLLTNMTVTNDHQHM 180
Query: 848 LSTYIADLFHVLLTGNGSTKVQVLKLLLNLSENPAMTDGLLGAQVDSSFLSLFDGHVAKE 1027
L +YI DLF VLLTGNG+TK VDSSFLSL+D HVAKE
Sbjct: 181 LHSYITDLFQVLLTGNGNTK------------------------VDSSFLSLYDSHVAKE 216
Query: 1028 ILVRVLTLFQNIDNCLKKEGRLALQPAFPEGSLFYLLYGDECAQKMRALVYHHDADVKEK 1207
IL+RVLTLFQNI NCLK EG LA+QP F EGSLF+LL+G+ECAQK+RALV HHDA+VKEK
Sbjct: 217 ILLRVLTLFQNIKNCLKIEGHLAVQPTFTEGSLFFLLHGEECAQKIRALVDHHDAEVKEK 276
Query: 1208 -VTMIPK 1225
VT+IPK
Sbjct: 277 VVTIIPK 283
>ref|NP_001154484.1| armadillo repeat-containing protein 10 isoform d [Homo sapiens].
Length = 249
Score = 295 bits (756), Expect = 5e-80
Identities = 173/307 (56%), Positives = 191/307 (62%), Gaps = 1/307 (0%)
Frame = +2
Query: 308 MGGARDVGWXXXXXXXXXXXCYCIYXXXXXXXXXXXXXXXXXXXSAEDLTNGSYDDILNA 487
MGG R GW CYCIY SAEDLT+GSYDD+LNA
Sbjct: 1 MGGPRGAGWVAAGLLLGAGACYCIYRLTRGRRRGDRELGIRSSKSAEDLTDGSYDDVLNA 60
Query: 488 EQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQINNPNQSIK 667
EQLQKLLYLLESTEDPVIIE+AL+TLGNNAAFS NQ IIRELGGI IV ++IN+ NQSIK
Sbjct: 61 EQLQKLLYLLESTEDPVIIERALITLGNNAAFSVNQAIIRELGGIPIVANKINHSNQSIK 120
Query: 668 EKXXXXXXXXSVNVENQIKIKVYVNQVCEDVLSGPLNSAVQLAGLRLLTNMTVTNDHQHM 847
EK SVNVENQIKIKV V L+LL N
Sbjct: 121 EKALNALNNLSVNVENQIKIKVQV--------------------LKLLLN---------- 150
Query: 848 LSTYIADLFHVLLTGNGSTKVQVLKLLLNLSENPAMTDGLLGAQVDSSFLSLFDGHVAKE 1027
LSENPAMT+GLL AQVDSSFLSL+D HVAKE
Sbjct: 151 -----------------------------LSENPAMTEGLLRAQVDSSFLSLYDSHVAKE 181
Query: 1028 ILVRVLTLFQNIDNCLKKEGRLALQPAFPEGSLFYLLYGDECAQKMRALVYHHDADVKEK 1207
IL+RVLTLFQNI NCLK EG LA+QP F EGSLF+LL+G+ECAQK+RALV HHDA+VKEK
Sbjct: 182 ILLRVLTLFQNIKNCLKIEGHLAVQPTFTEGSLFFLLHGEECAQKIRALVDHHDAEVKEK 241
Query: 1208 -VTMIPK 1225
VT+IPK
Sbjct: 242 VVTIIPK 248
>ref|NP_001154482.1| armadillo repeat-containing protein 10 isoform c [Homo sapiens].
Length = 284
Score = 278 bits (710), Expect = 1e-74
Identities = 173/342 (50%), Positives = 191/342 (55%), Gaps = 36/342 (10%)
Frame = +2
Query: 308 MGGARDVGWXXXXXXXXXXXCYCIYXXXXXXXXXXXXXXXXXXXSA-------------- 445
MGG R GW CYCIY SA
Sbjct: 1 MGGPRGAGWVAAGLLLGAGACYCIYRLTRGRRRGDRELGIRSSKSAGALEEGTSEGQLCG 60
Query: 446 ---------------------EDLTNGSYDDILNAEQLQKLLYLLESTEDPVIIEKALVT 562
EDLT+GSYDD+LNAEQLQKLLYLLESTEDPVIIE+AL+T
Sbjct: 61 RSARPQTGGTWESQWSKTSQPEDLTDGSYDDVLNAEQLQKLLYLLESTEDPVIIERALIT 120
Query: 563 LGNNAAFSANQVIIRELGGITIVGSQINNPNQSIKEKXXXXXXXXSVNVENQIKIKVYVN 742
LGNNAAFS NQ IIRELGGI IV ++IN+ NQSIKEK SVNVENQIKIKV V
Sbjct: 121 LGNNAAFSVNQAIIRELGGIPIVANKINHSNQSIKEKALNALNNLSVNVENQIKIKVQV- 179
Query: 743 QVCEDVLSGPLNSAVQLAGLRLLTNMTVTNDHQHMLSTYIADLFHVLLTGNGSTKVQVLK 922
L+LL N
Sbjct: 180 -------------------LKLLLN----------------------------------- 185
Query: 923 LLLNLSENPAMTDGLLGAQVDSSFLSLFDGHVAKEILVRVLTLFQNIDNCLKKEGRLALQ 1102
LSENPAMT+GLL AQVDSSFLSL+D HVAKEIL+RVLTLFQNI NCLK EG LA+Q
Sbjct: 186 ----LSENPAMTEGLLRAQVDSSFLSLYDSHVAKEILLRVLTLFQNIKNCLKIEGHLAVQ 241
Query: 1103 PAFPEGSLFYLLYGDECAQKMRALVYHHDADVKEK-VTMIPK 1225
P F EGSLF+LL+G+ECAQK+RALV HHDA+VKEK VT+IPK
Sbjct: 242 PTFTEGSLFFLLHGEECAQKIRALVDHHDAEVKEKVVTIIPK 283
>ref|NP_808817.1| armadillo repeat-containing X-linked protein 3 [Homo sapiens].
Length = 379
Score = 237 bits (605), Expect = 2e-62
Identities = 129/250 (51%), Positives = 174/250 (69%), Gaps = 1/250 (0%)
Frame = +2
Query: 464 SYDDILNAEQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQI 643
S D +L+ ++LQK+L L+E +E P I+E AL+ LGNNAA++ N+ IIR+LGG+ IV +
Sbjct: 113 SDDTVLSPQELQKVLCLVEMSEKPYILEAALIALGNNAAYAFNRDIIRDLGGLPIVAKIL 172
Query: 644 NNPNQSIKEKXXXXXXXXSVNVENQIKIKVYVNQVCEDVLSGPLNSAVQLAGLRLLTNMT 823
N + +KEK SVN ENQ ++KVY+NQVC+D ++ LNS+VQLAGLRLLTNMT
Sbjct: 173 NTRDPIVKEKALIVLNNLSVNAENQRRLKVYMNQVCDDTITSRLNSSVQLAGLRLLTNMT 232
Query: 824 VTNDHQHMLSTYIADLFHVLLTGNGSTKVQVLKLLLNLSENPAMTDGLLGAQVDSSFLSL 1003
VTN++QHML+ I+D F + GN TK+QVLKLLLNL+ENPAMT LL AQV SS SL
Sbjct: 233 VTNEYQHMLANSISDFFRLFSAGNEETKLQVLKLLLNLAENPAMTRELLRAQVPSSLGSL 292
Query: 1004 FDGHVAKEILVRVLTLFQNIDNCLKKEGRLALQPAFPEGSLFYLLYGDE-CAQKMRALVY 1180
F+ KE+++++L +F+NI++ K E Q F EGSLF+ L + CA K+ +
Sbjct: 293 FNKKENKEVILKLLVIFENINDNFKWEENEPTQNQFGEGSLFFFLKEFQVCADKVLGIES 352
Query: 1181 HHDADVKEKV 1210
HHD VK KV
Sbjct: 353 HHDFLVKVKV 362
>ref|NP_808816.1| armadillo repeat-containing X-linked protein 3 [Homo sapiens].
Length = 379
Score = 237 bits (605), Expect = 2e-62
Identities = 129/250 (51%), Positives = 174/250 (69%), Gaps = 1/250 (0%)
Frame = +2
Query: 464 SYDDILNAEQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQI 643
S D +L+ ++LQK+L L+E +E P I+E AL+ LGNNAA++ N+ IIR+LGG+ IV +
Sbjct: 113 SDDTVLSPQELQKVLCLVEMSEKPYILEAALIALGNNAAYAFNRDIIRDLGGLPIVAKIL 172
Query: 644 NNPNQSIKEKXXXXXXXXSVNVENQIKIKVYVNQVCEDVLSGPLNSAVQLAGLRLLTNMT 823
N + +KEK SVN ENQ ++KVY+NQVC+D ++ LNS+VQLAGLRLLTNMT
Sbjct: 173 NTRDPIVKEKALIVLNNLSVNAENQRRLKVYMNQVCDDTITSRLNSSVQLAGLRLLTNMT 232
Query: 824 VTNDHQHMLSTYIADLFHVLLTGNGSTKVQVLKLLLNLSENPAMTDGLLGAQVDSSFLSL 1003
VTN++QHML+ I+D F + GN TK+QVLKLLLNL+ENPAMT LL AQV SS SL
Sbjct: 233 VTNEYQHMLANSISDFFRLFSAGNEETKLQVLKLLLNLAENPAMTRELLRAQVPSSLGSL 292
Query: 1004 FDGHVAKEILVRVLTLFQNIDNCLKKEGRLALQPAFPEGSLFYLLYGDE-CAQKMRALVY 1180
F+ KE+++++L +F+NI++ K E Q F EGSLF+ L + CA K+ +
Sbjct: 293 FNKKENKEVILKLLVIFENINDNFKWEENEPTQNQFGEGSLFFFLKEFQVCADKVLGIES 352
Query: 1181 HHDADVKEKV 1210
HHD VK KV
Sbjct: 353 HHDFLVKVKV 362
>ref|NP_057691.1| armadillo repeat-containing X-linked protein 3 [Homo sapiens].
Length = 379
Score = 237 bits (605), Expect = 2e-62
Identities = 129/250 (51%), Positives = 174/250 (69%), Gaps = 1/250 (0%)
Frame = +2
Query: 464 SYDDILNAEQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQI 643
S D +L+ ++LQK+L L+E +E P I+E AL+ LGNNAA++ N+ IIR+LGG+ IV +
Sbjct: 113 SDDTVLSPQELQKVLCLVEMSEKPYILEAALIALGNNAAYAFNRDIIRDLGGLPIVAKIL 172
Query: 644 NNPNQSIKEKXXXXXXXXSVNVENQIKIKVYVNQVCEDVLSGPLNSAVQLAGLRLLTNMT 823
N + +KEK SVN ENQ ++KVY+NQVC+D ++ LNS+VQLAGLRLLTNMT
Sbjct: 173 NTRDPIVKEKALIVLNNLSVNAENQRRLKVYMNQVCDDTITSRLNSSVQLAGLRLLTNMT 232
Query: 824 VTNDHQHMLSTYIADLFHVLLTGNGSTKVQVLKLLLNLSENPAMTDGLLGAQVDSSFLSL 1003
VTN++QHML+ I+D F + GN TK+QVLKLLLNL+ENPAMT LL AQV SS SL
Sbjct: 233 VTNEYQHMLANSISDFFRLFSAGNEETKLQVLKLLLNLAENPAMTRELLRAQVPSSLGSL 292
Query: 1004 FDGHVAKEILVRVLTLFQNIDNCLKKEGRLALQPAFPEGSLFYLLYGDE-CAQKMRALVY 1180
F+ KE+++++L +F+NI++ K E Q F EGSLF+ L + CA K+ +
Sbjct: 293 FNKKENKEVILKLLVIFENINDNFKWEENEPTQNQFGEGSLFFFLKEFQVCADKVLGIES 352
Query: 1181 HHDADVKEKV 1210
HHD VK KV
Sbjct: 353 HHDFLVKVKV 362
>ref|NP_057692.1| armadillo repeat-containing X-linked protein 1 [Homo sapiens].
Length = 453
Score = 233 bits (594), Expect = 3e-61
Identities = 126/251 (50%), Positives = 168/251 (66%), Gaps = 1/251 (0%)
Frame = +2
Query: 470 DDILNAEQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQINN 649
DDIL+A LQK+L +LE T DP I E ALVTLGNNAA+S NQ IRELGG+ I+ I
Sbjct: 199 DDILSAPDLQKVLNILERTNDPFIQEVALVTLGNNAAYSFNQNAIRELGGVPIIAKLIKT 258
Query: 650 PNQSIKEKXXXXXXXXSVNVENQIKIKVYVNQVCEDVLSGPLNSAVQLAGLRLLTNMTVT 829
+ I+EK SVN ENQ KIK Y++QVC+D + L+SAVQ+AGLRLLTNMTVT
Sbjct: 259 KDPIIREKTYNALNNLSVNAENQGKIKTYISQVCDDTMVCRLDSAVQMAGLRLLTNMTVT 318
Query: 830 NDHQHMLSTYIADLFHVLLTGNGSTKVQVLKLLLNLSENPAMTDGLLGAQVDSSFLSLFD 1009
N +QH+LS D F +L GN TK+Q++KL++N +ENPAMT L+ +V S +SLF+
Sbjct: 319 NHYQHLLSYSFPDFFALLFLGNHFTKIQIMKLIINFTENPAMTRELVSCKVPSELISLFN 378
Query: 1010 GHVAKEILVRVLTLFQNIDNCLKKEGRLALQPAFPEGSLFYLL-YGDECAQKMRALVYHH 1186
+EIL+ +LTLF+NI++ +K EG + + F SLF+L C +K++AL H+
Sbjct: 379 KEWDREILLNILTLFENINDNIKNEGLASSRKEFSRSSLFFLFKESGVCVKKIKALANHN 438
Query: 1187 DADVKEKVTMI 1219
D VK KV +
Sbjct: 439 DLVVKVKVLKV 449
>ref|NP_055597.1| armadillo repeat-containing X-linked protein 2 [Homo sapiens].
Length = 632
Score = 211 bits (538), Expect = 9e-55
Identities = 118/255 (46%), Positives = 166/255 (65%), Gaps = 2/255 (0%)
Frame = +2
Query: 470 DDILNAEQLQKLLYLLESTEDPVIIEKALVTLGNNAAFSANQVIIRELGGITIVGSQINN 649
D+IL L+K+L LL+ ++DP I + AL+TL NNA +S NQ IR+LGG+ I+ + IN
Sbjct: 380 DEILGVRDLRKVLALLQKSDDPFIQQVALLTLSNNANYSCNQETIRKLGGLPIIANMINK 439
Query: 650 PNQSIKEKXXXXXXXXSVNVENQIKIKVYVNQVCEDVLSGPLNSAVQLAGLRLLTNMTVT 829
+ IKEK S N ENQ +++VY+N+V +D+++ LNSAVQ+ GL+ LTNMT+T
Sbjct: 440 TDPHIKEKALMAMNNLSENYENQGRLQVYMNKVMDDIMASNLNSAVQVVGLKFLTNMTIT 499
Query: 830 NDHQHMLSTYIADLFHVLLTGNGSTKVQVLKLLLNLSENPAMTDGLLGAQVDSSFLSLFD 1009
ND+QH+L IA+ F +L G G KV++LK+L N +ENP M LL QV +SF SL++
Sbjct: 500 NDYQHLLVNSIANFFRLLSQGGGKIKVEILKILSNFAENPDMLKKLLSTQVPASFSSLYN 559
Query: 1010 GHVAKEILVRVLTLFQNIDNCLKKEGRLALQPAFPEGSLFYL-LYGDECAQKMRALVYHH 1186
+V EIL+ LTLF+ I + L+ E + F +GSLFYL C +K+RAL HH
Sbjct: 560 SYVESEILINALTLFEIIYDNLRAE--VFNYREFNKGSLFYLCTTSGVCVKKIRALANHH 617
Query: 1187 DADVKEKV-TMIPKF 1228
D VK KV ++ KF
Sbjct: 618 DLLVKVKVIKLVNKF 632
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,524,512
Number of extensions: 1053613
Number of successful extensions: 3169
Number of sequences better than 1.0e-05: 40
Number of HSP's gapped: 3132
Number of HSP's successfully gapped: 43
Length of query: 432
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 327
Effective length of database: 14,835,944
Effective search space: 4851353688
Effective search space used: 4851353688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012691
(1297 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 874 0.0
Sscrofa_ChrX 98 1e-17
>Sscrofa_Chr09
|| Length = 153670197
Score = 874 bits (441), Expect = 0.0
Identities = 444/445 (99%)
Strand = Plus / Plus
Query: 2 aaaaggggcgggcctcggcctggcgccagcccgcctctgggcggctgtggaggccccctg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113588404 aaaaggggcgggcctcggcctggcgccagcccgcctctgggcggctgtggaggccccctg 113588463
Query: 62 ggtccttttggggcctggagcgctagcagcgcttcaccctcgccccgcccagcctctagg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113588464 ggtccttttggggcctggagcgctagcagcgcttcaccctcgccccgcccagcctctagg 113588523
Query: 122 aagccgcctggacgcatccaggcccgagtgggcggttttatattttaactgggcggcttc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113588524 aagccgcctggacgcatccaggcccgagtgggcggttttatattttaactgggcggcttc 113588583
Query: 182 cgggaggcggagcccagaccctcttttcctttctctcgcggctgcttgagctcgggcggc 241
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 113588584 cgggaggcggagcccagaccctcatttcctttctctcgcggctgcttgagctcgggcggc 113588643
Query: 242 gaagggtctcgctggcttcagaccctgcccgccaggcccagcgctgcgcgcagccccagc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113588644 gaagggtctcgctggcttcagaccctgcccgccaggcccagcgctgcgcgcagccccagc 113588703
Query: 302 gagagcatgggcggcgcccgggacgtgggctgggtggcggcgggcctggtccttgcggcc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113588704 gagagcatgggcggcgcccgggacgtgggctgggtggcggcgggcctggtccttgcggcc 113588763
Query: 362 ggtgcctgctattgcatttacaggctgacgcggggccagcggcgaggtgcccgtcgggtt 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113588764 ggtgcctgctattgcatttacaggctgacgcggggccagcggcgaggtgcccgtcgggtt 113588823
Query: 422 ggactgcgcccctcgcggtccgcag 446
|||||||||||||||||||||||||
Sbjct: 113588824 ggactgcgcccctcgcggtccgcag 113588848
Score = 874 bits (441), Expect = 0.0
Identities = 444/445 (99%)
Strand = Plus / Plus
Query: 2 aaaaggggcgggcctcggcctggcgccagcccgcctctgggcggctgtggaggccccctg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113785700 aaaaggggcgggcctcggcctggcgccagcccgcctctgggcggctgtggaggccccctg 113785759
Query: 62 ggtccttttggggcctggagcgctagcagcgcttcaccctcgccccgcccagcctctagg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113785760 ggtccttttggggcctggagcgctagcagcgcttcaccctcgccccgcccagcctctagg 113785819
Query: 122 aagccgcctggacgcatccaggcccgagtgggcggttttatattttaactgggcggcttc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113785820 aagccgcctggacgcatccaggcccgagtgggcggttttatattttaactgggcggcttc 113785879
Query: 182 cgggaggcggagcccagaccctcttttcctttctctcgcggctgcttgagctcgggcggc 241
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 113785880 cgggaggcggagcccagaccctcatttcctttctctcgcggctgcttgagctcgggcggc 113785939
Query: 242 gaagggtctcgctggcttcagaccctgcccgccaggcccagcgctgcgcgcagccccagc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113785940 gaagggtctcgctggcttcagaccctgcccgccaggcccagcgctgcgcgcagccccagc 113785999
Query: 302 gagagcatgggcggcgcccgggacgtgggctgggtggcggcgggcctggtccttgcggcc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113786000 gagagcatgggcggcgcccgggacgtgggctgggtggcggcgggcctggtccttgcggcc 113786059
Query: 362 ggtgcctgctattgcatttacaggctgacgcggggccagcggcgaggtgcccgtcgggtt 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113786060 ggtgcctgctattgcatttacaggctgacgcggggccagcggcgaggtgcccgtcgggtt 113786119
Query: 422 ggactgcgcccctcgcggtccgcag 446
|||||||||||||||||||||||||
Sbjct: 113786120 ggactgcgcccctcgcggtccgcag 113786144
Score = 620 bits (313), Expect = e-175
Identities = 319/321 (99%)
Strand = Plus / Plus
Query: 977 caggtggattcatcattcctttcccttttcgatggccacgtagcaaaggaaattcttgtt 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113618379 caggtggattcatcattcctttcccttttcgatggccacgtagcaaaggaaattcttgtt 113618438
Query: 1037 cgagttctcacactgtttcagaatatagataactgcctcaaaaaggaaggtcgtttagct 1096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113618439 cgagttctcacactgtttcagaatatagataactgcctcaaaaaggaaggtcgtttagct 113618498
Query: 1097 cttcagccagctttccctgaaggttctctgttttacctgttatatggagacgaatgtgcc 1156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113618499 cttcagccagctttccctgaaggttctctgttttacctgttatatggagacgaatgtgcc 113618558
Query: 1157 cagaaaatgagagcgttagtttatcaccatgacgcggacgtgaaggaaaaggtaacgatg 1216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113618559 cagaaaatgagagcgttagtttatcaccatgacgcggacgtgaaggaaaaggtaacgatg 113618618
Query: 1217 ataccaaaattctaattggtcggtcgtgtttttccaggaagtagtgcagtctagaaagaa 1276
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 113618619 ataccaaaattctaattggtcggtcgtgtttttccaggaagtagtgcagtctagaagtaa 113618678
Query: 1277 tacacataaacttctcatctt 1297
|||||||||||||||||||||
Sbjct: 113618679 tacacataaacttctcatctt 113618699
Score = 620 bits (313), Expect = e-175
Identities = 319/321 (99%)
Strand = Plus / Plus
Query: 977 caggtggattcatcattcctttcccttttcgatggccacgtagcaaaggaaattcttgtt 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113815674 caggtggattcatcattcctttcccttttcgatggccacgtagcaaaggaaattcttgtt 113815733
Query: 1037 cgagttctcacactgtttcagaatatagataactgcctcaaaaaggaaggtcgtttagct 1096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113815734 cgagttctcacactgtttcagaatatagataactgcctcaaaaaggaaggtcgtttagct 113815793
Query: 1097 cttcagccagctttccctgaaggttctctgttttacctgttatatggagacgaatgtgcc 1156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113815794 cttcagccagctttccctgaaggttctctgttttacctgttatatggagacgaatgtgcc 113815853
Query: 1157 cagaaaatgagagcgttagtttatcaccatgacgcggacgtgaaggaaaaggtaacgatg 1216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113815854 cagaaaatgagagcgttagtttatcaccatgacgcggacgtgaaggaaaaggtaacgatg 113815913
Query: 1217 ataccaaaattctaattggtcggtcgtgtttttccaggaagtagtgcagtctagaaagaa 1276
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 113815914 ataccaaaattctaattggtcggtcgtgtttttccaggaagtagtgcagtctagaagtaa 113815973
Query: 1277 tacacataaacttctcatctt 1297
|||||||||||||||||||||
Sbjct: 113815974 tacacataaacttctcatctt 113815994
Score = 359 bits (181), Expect = 2e-96
Identities = 181/181 (100%)
Strand = Plus / Plus
Query: 729 aggtgtacgttaatcaagtctgcgaggacgtcttgtctggtcccctgaactcggccgtgc 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113613794 aggtgtacgttaatcaagtctgcgaggacgtcttgtctggtcccctgaactcggccgtgc 113613853
Query: 789 agctggctggactgaggctgttgacaaacatgacagttaccaatgaccaccagcacatgc 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113613854 agctggctggactgaggctgttgacaaacatgacagttaccaatgaccaccagcacatgc 113613913
Query: 849 tgagcacctacattgcagacctgttccacgtgttgctcacgggaaatggaagcaccaagg 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113613914 tgagcacctacattgcagacctgttccacgtgttgctcacgggaaatggaagcaccaagg 113613973
Query: 909 t 909
|
Sbjct: 113613974 t 113613974
Score = 359 bits (181), Expect = 2e-96
Identities = 181/181 (100%)
Strand = Plus / Plus
Query: 729 aggtgtacgttaatcaagtctgcgaggacgtcttgtctggtcccctgaactcggccgtgc 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113811090 aggtgtacgttaatcaagtctgcgaggacgtcttgtctggtcccctgaactcggccgtgc 113811149
Query: 789 agctggctggactgaggctgttgacaaacatgacagttaccaatgaccaccagcacatgc 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113811150 agctggctggactgaggctgttgacaaacatgacagttaccaatgaccaccagcacatgc 113811209
Query: 849 tgagcacctacattgcagacctgttccacgtgttgctcacgggaaatggaagcaccaagg 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113811210 tgagcacctacattgcagacctgttccacgtgttgctcacgggaaatggaagcaccaagg 113811269
Query: 909 t 909
|
Sbjct: 113811270 t 113811270
Score = 307 bits (155), Expect = 8e-81
Identities = 155/155 (100%)
Strand = Plus / Plus
Query: 443 gcagaagacttaaccaatggctcatatgatgatatcctaaatgctgagcaacttcagaaa 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113607488 gcagaagacttaaccaatggctcatatgatgatatcctaaatgctgagcaacttcagaaa 113607547
Query: 503 ctcctgtacctgcttgagtcaactgaagatcctgtcatcatcgaaaaagctttggtcact 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113607548 ctcctgtacctgcttgagtcaactgaagatcctgtcatcatcgaaaaagctttggtcact 113607607
Query: 563 ctaggtaacaatgcagccttttcagccaaccaagt 597
|||||||||||||||||||||||||||||||||||
Sbjct: 113607608 ctaggtaacaatgcagccttttcagccaaccaagt 113607642
Score = 307 bits (155), Expect = 8e-81
Identities = 155/155 (100%)
Strand = Plus / Plus
Query: 443 gcagaagacttaaccaatggctcatatgatgatatcctaaatgctgagcaacttcagaaa 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113804784 gcagaagacttaaccaatggctcatatgatgatatcctaaatgctgagcaacttcagaaa 113804843
Query: 503 ctcctgtacctgcttgagtcaactgaagatcctgtcatcatcgaaaaagctttggtcact 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113804844 ctcctgtacctgcttgagtcaactgaagatcctgtcatcatcgaaaaagctttggtcact 113804903
Query: 563 ctaggtaacaatgcagccttttcagccaaccaagt 597
|||||||||||||||||||||||||||||||||||
Sbjct: 113804904 ctaggtaacaatgcagccttttcagccaaccaagt 113804938
Score = 272 bits (137), Expect = 4e-70
Identities = 137/137 (100%)
Strand = Plus / Plus
Query: 596 gtcattattcgtgaattgggtggtattacaattgtcggaagccaaatcaataatcccaac 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113610351 gtcattattcgtgaattgggtggtattacaattgtcggaagccaaatcaataatcccaac 113610410
Query: 656 cagagtattaaagagaaagctttaaatgcactgaataacctgagtgtgaatgttgaaaat 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113610411 cagagtattaaagagaaagctttaaatgcactgaataacctgagtgtgaatgttgaaaat 113610470
Query: 716 caaatcaagattaaggt 732
|||||||||||||||||
Sbjct: 113610471 caaatcaagattaaggt 113610487
Score = 272 bits (137), Expect = 4e-70
Identities = 137/137 (100%)
Strand = Plus / Plus
Query: 596 gtcattattcgtgaattgggtggtattacaattgtcggaagccaaatcaataatcccaac 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113807647 gtcattattcgtgaattgggtggtattacaattgtcggaagccaaatcaataatcccaac 113807706
Query: 656 cagagtattaaagagaaagctttaaatgcactgaataacctgagtgtgaatgttgaaaat 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113807707 cagagtattaaagagaaagctttaaatgcactgaataacctgagtgtgaatgttgaaaat 113807766
Query: 716 caaatcaagattaaggt 732
|||||||||||||||||
Sbjct: 113807767 caaatcaagattaaggt 113807783
Score = 151 bits (76), Expect = 1e-33
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 906 aggttcaagttttgaaactgctgttgaatttgtctgaaaacccagccatgacagatggac 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113617388 aggttcaagttttgaaactgctgttgaatttgtctgaaaacccagccatgacagatggac 113617447
Query: 966 tccttggtgcccaggt 981
||||||||||||||||
Sbjct: 113617448 tccttggtgcccaggt 113617463
Score = 151 bits (76), Expect = 1e-33
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 906 aggttcaagttttgaaactgctgttgaatttgtctgaaaacccagccatgacagatggac 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113814683 aggttcaagttttgaaactgctgttgaatttgtctgaaaacccagccatgacagatggac 113814742
Query: 966 tccttggtgcccaggt 981
||||||||||||||||
Sbjct: 113814743 tccttggtgcccaggt 113814758
>Sscrofa_ChrX
|| Length = 144288218
Score = 97.6 bits (49), Expect = 1e-17
Identities = 85/97 (87%)
Strand = Plus / Minus
Query: 858 acattgcagacctgttccacgtgttgctcacgggaaatggaagcaccaaggttcaagttt 917
|||||||||| || ||||| ||||| || || |||||||||| |||||| ||||||||||
Sbjct: 135472914 acattgcagagcttttccatgtgttacttacaggaaatggaaacaccaaagttcaagttt 135472855
Query: 918 tgaaactgctgttgaatttgtctgaaaacccagccat 954
|||||||||| ||||||||||||| ||| |||||||
Sbjct: 135472854 tgaaactgcttttgaatttgtctggaaattcagccat 135472818
Score = 67.9 bits (34), Expect = 1e-08
Identities = 61/70 (87%)
Strand = Plus / Minus
Query: 640 aatcaataatcccaaccagagtattaaagagaaagctttaaatgcactgaataacctgag 699
|||||| ||||||| ||| || ||||||| || |||||||||||||||| |||||| ||
Sbjct: 135473116 aatcaacaatcccagccaaaggattaaaggcaaggctttaaatgcactgagtaacctaag 135473057
Query: 700 tgtgaatgtt 709
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Sbjct: 135473056 tgtgaatgtt 135473047
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,818,339
Number of extensions: 220
Number of successful extensions: 220
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 14
Length of query: 1297
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1276
Effective length of database: 2,808,413,156
Effective search space: 3583535187056
Effective search space used: 3583535187056
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)