Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012694
(1225 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001020377.2| enoyl-CoA hydratase, mitochondrial precursor... 455 e-128
Alignment gi|NP_001033625.1| enoyl-CoA hydratase domain-containing protei... 123 3e-28
Alignment gi|NP_001180085.1| enoyl-CoA hydratase domain-containing protei... 116 4e-26
Alignment gi|XP_002692097.1| PREDICTED: enoyl Coenzyme A hydratase domain... 116 4e-26
Alignment gi|XP_002695024.1| PREDICTED: enoyl Coenzyme A hydratase 1, per... 104 1e-22
Alignment gi|XP_002701918.1| PREDICTED: enoyl Coenzyme A hydratase 1, per... 104 1e-22
Alignment gi|NP_001069248.2| peroxisomal bifunctional enzyme [Bos taurus]. 100 3e-21
Alignment gi|NP_001039878.1| 3-hydroxyisobutyryl-CoA hydrolase, mitochond... 83 6e-16
Alignment gi|XP_002694023.1| PREDICTED: AU RNA binding protein/enoyl-Coen... 82 1e-15
Alignment gi|XP_002683972.1| PREDICTED: Enoyl-CoA hydratase, mitochondria... 82 1e-15
>ref|NP_001020377.2| enoyl-CoA hydratase, mitochondrial precursor [Bos taurus].
Length = 290
Score = 455 bits (1170), Expect = e-128
Identities = 233/273 (85%), Positives = 246/273 (90%)
Frame = +3
Query: 291 WPGCPALRSLASSAHFEHIVVAKKGKSSNVGLIQLNRPKALNALCKGLILELNQALQAFE 470
W CP RS ASSA FE+I+ AKKG++SNVGLIQLNRPKALNALC GLI+ELNQALQAFE
Sbjct: 18 WLFCPVQRSFASSAAFEYIITAKKGRNSNVGLIQLNRPKALNALCNGLIVELNQALQAFE 77
Query: 471 EDPAVGAIVLTGGEKAFAAGADIKEMQNQTFQDCYSGGFLSHWDHLSRVRKPVIAAVNGY 650
EDPAVGAIVLTGGEK FAAGADIKEMQ+ TFQ+CYSGGFLSHWD L+RV+KPVIAAVNGY
Sbjct: 78 EDPAVGAIVLTGGEKVFAAGADIKEMQSLTFQNCYSGGFLSHWDQLTRVKKPVIAAVNGY 137
Query: 651 ALGGGCELAMMCDIIYAGEKAQFGQPEXXXXXXXXXXXXQRLTRAVGKSLTMEMVLTGDR 830
ALGGGCELAMMCDIIYAGEKAQFGQPE QRLTRAVGKSL MEMVLTGDR
Sbjct: 138 ALGGGCELAMMCDIIYAGEKAQFGQPEILIGTIPGAGGTQRLTRAVGKSLAMEMVLTGDR 197
Query: 831 ISAQEAKQAGLVSKIFPVETLVEEAIQCAEKIASYSKIVTAMAKESVNAAFETSLAEGLK 1010
ISAQ+AKQAGLVSKIFPVET+VEEAIQCAEKIAS SKIVTAMAKESVNAAFE +LAEG+K
Sbjct: 198 ISAQDAKQAGLVSKIFPVETVVEEAIQCAEKIASNSKIVTAMAKESVNAAFEMTLAEGVK 257
Query: 1011 LEKKLFYSTFATEDRKEGMTAFVEKRKANFKDQ 1109
LEKKLFYSTFATEDRKEGM AFVEKRKANFKDQ
Sbjct: 258 LEKKLFYSTFATEDRKEGMAAFVEKRKANFKDQ 290
>ref|NP_001033625.1| enoyl-CoA hydratase domain-containing protein 2, mitochondrial
precursor [Bos taurus].
Length = 296
Score = 123 bits (309), Expect = 3e-28
Identities = 83/260 (31%), Positives = 123/260 (47%), Gaps = 9/260 (3%)
Frame = +3
Query: 348 VVAKKGKSSNVGLIQLNRPKALNALCKGLILELNQALQAFEEDPAVGAIVLTGGEKA-FA 524
V A G + + I +NRP A NAL + +L +AL ED V ++ G K F
Sbjct: 36 VCALAGPNQGIAEILMNRPSARNALGNVFVSQLLEALAQLREDRQVRVLIFRSGVKGVFC 95
Query: 525 AGADIKEMQNQTFQDCYSGGFLSH----WDHLSRVRKPVIAAVNGYALGGGCELAMMCDI 692
AGAD+KE + + + G F+ ++ P IAA++G+ALGGG ELA+ CD+
Sbjct: 96 AGADLKEREQMS--EAEVGLFVQRLRGLMTEIAAFPAPTIAAMDGFALGGGLELALACDL 153
Query: 693 IYAGEKAQFGQPEXXXXXXXXXXXXQRLTRAVGKSLTMEMVLTGDRISAQEAKQAGLVSK 872
A A G E QRL R +G +L E++ TG R+S +A+ GLV+
Sbjct: 154 RVAASSAVMGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGAQAQALGLVNH 213
Query: 873 IFPV----ETLVEEAIQCAEKIASYSKIVTAMAKESVNAAFETSLAEGLKLEKKLFYSTF 1040
A A++I + I ++K +++ E +A G+ +E +
Sbjct: 214 AVAQNEEGNAAYHRARALAQEILPQAPIAVRLSKVAIDRGIEVDIASGMAIEGICYAQNI 273
Query: 1041 ATEDRKEGMTAFVEKRKANF 1100
T DR EGM AF EKR F
Sbjct: 274 PTRDRLEGMAAFREKRLPRF 293
>ref|NP_001180085.1| enoyl-CoA hydratase domain-containing protein 3, mitochondrial [Bos
taurus].
Length = 300
Score = 116 bits (291), Expect = 4e-26
Identities = 78/242 (32%), Positives = 124/242 (51%), Gaps = 7/242 (2%)
Frame = +3
Query: 387 IQLNRPKALNALCKGLILELNQALQAFEEDPAVGAIVLTGGEKAFAAGADIKEMQNQTFQ 566
I L+ PK NAL ++ L + E + I+++ F++G D+KE+ ++
Sbjct: 59 IVLSDPKRRNALSLAMLKSLQSDILHEAESQDLKVIIISAEGPVFSSGHDLKELTDEQGP 118
Query: 567 DCYSGGFLSHWDHLSRVRK---PVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEXX 737
D ++ F + + + ++ P+IA VNG A GC+L CDI A +K+ F P
Sbjct: 119 DYHAEVFQTCSEVMMLIQNHPVPIIAMVNGLATAAGCQLVASCDIAVASDKSSFAMPGVN 178
Query: 738 XXXXXXXXXXQRLTRAVGKSLTMEMVLTGDRISAQEAKQAGLVSKIFPVETLVEEAIQCA 917
L RAV + + +EM+ TG+ ISAQEA GL+S++ P E L EE ++ A
Sbjct: 179 IGVFCSTPAVA-LGRAVPRKVALEMLFTGEPISAQEALLHGLLSRVVPEERLEEETMRIA 237
Query: 918 EKIASYSKIVTAMAKESVNAAFETSLAEGLK----LEKKLFYSTFATEDRKEGMTAFVEK 1085
K+AS S+ V ++ K AAF LA+ L+ L + D +EG+ AF++K
Sbjct: 238 RKVASLSRSVLSLGK----AAFYRQLAQDLRTAYHLTSQTMVDNLGLPDGQEGVKAFLQK 293
Query: 1086 RK 1091
RK
Sbjct: 294 RK 295
>ref|XP_002692097.1| PREDICTED: enoyl Coenzyme A hydratase domain containing 3-like [Bos
taurus].
Length = 300
Score = 116 bits (291), Expect = 4e-26
Identities = 78/242 (32%), Positives = 124/242 (51%), Gaps = 7/242 (2%)
Frame = +3
Query: 387 IQLNRPKALNALCKGLILELNQALQAFEEDPAVGAIVLTGGEKAFAAGADIKEMQNQTFQ 566
I L+ PK NAL ++ L + E + I+++ F++G D+KE+ ++
Sbjct: 59 IVLSDPKRRNALSLAMLKSLQSDILHEAESQDLKVIIISAEGPVFSSGHDLKELTDEQGP 118
Query: 567 DCYSGGFLSHWDHLSRVRK---PVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEXX 737
D ++ F + + + ++ P+IA VNG A GC+L CDI A +K+ F P
Sbjct: 119 DYHAEVFQTCSEVMMLIQNHPVPIIAMVNGLATAAGCQLVASCDIAVASDKSSFAMPGVN 178
Query: 738 XXXXXXXXXXQRLTRAVGKSLTMEMVLTGDRISAQEAKQAGLVSKIFPVETLVEEAIQCA 917
L RAV + + +EM+ TG+ ISAQEA GL+S++ P E L EE ++ A
Sbjct: 179 IGVFCSTPAVA-LGRAVPRKVALEMLFTGEPISAQEALLHGLLSRVVPEERLEEETMRIA 237
Query: 918 EKIASYSKIVTAMAKESVNAAFETSLAEGLK----LEKKLFYSTFATEDRKEGMTAFVEK 1085
K+AS S+ V ++ K AAF LA+ L+ L + D +EG+ AF++K
Sbjct: 238 RKVASLSRSVLSLGK----AAFYRQLAQDLRTAYHLTSQTMVDNLGLPDGQEGVKAFLQK 293
Query: 1086 RK 1091
RK
Sbjct: 294 RK 295
>ref|XP_002695024.1| PREDICTED: enoyl Coenzyme A hydratase 1, peroxisomal isoform 1 [Bos
taurus].
Length = 326
Score = 104 bits (260), Expect = 1e-22
Identities = 73/250 (29%), Positives = 119/250 (47%), Gaps = 16/250 (6%)
Frame = +3
Query: 387 IQLNRPKALNALCKGLILELNQALQAFEEDPAVGAIVLTGGEKAFAAGADIKEMQNQTFQ 566
+QLNRP+ NA+ K E+ ED +V++G K F++G D+ +M + Q
Sbjct: 68 VQLNRPEKRNAMNKAFWREMVVCFNKIAEDSDCRVVVISGAGKMFSSGIDLMDMASDLLQ 127
Query: 567 DCYSGGFLSHWDHL--------------SRVRKPVIAAVNGYALGGGCELAMMCDIIYAG 704
W HL + KPVIAA++G +GGG +L CDI Y+
Sbjct: 128 PAGDDSARISW-HLHSLLTRYQETFSVIEKCPKPVIAAIHGGCIGGGVDLITACDIRYST 186
Query: 705 EKAQFGQPEXXXXXXXXXXXXQRLTRAVG-KSLTMEMVLTGDRISAQEAKQAGLVSKIFP 881
+ F E QRL + +G +SL E+ T ++ A EA ++GLVS++FP
Sbjct: 187 RDSFFQVKEVDVGLAADVGTLQRLPKVIGNQSLVNELAYTARKMMADEALESGLVSRLFP 246
Query: 882 -VETLVEEAIQCAEKIASYSKIVTAMAKESVNAAFETSLAEGLKLEKKLFYSTFATEDRK 1058
E++++ A A +I+S S + K ++ + + S+ E L K S T+D
Sbjct: 247 DKESMLDAAFTLAAEISSKSPVAVQSTKINLIYSRDHSVMESLNYMKSWNMSMLQTKDIM 306
Query: 1059 EGMTAFVEKR 1088
+ + A +EK+
Sbjct: 307 KSVQAAIEKK 316
>ref|XP_002701918.1| PREDICTED: enoyl Coenzyme A hydratase 1, peroxisomal isoform 1 [Bos
taurus].
Length = 326
Score = 104 bits (260), Expect = 1e-22
Identities = 73/250 (29%), Positives = 119/250 (47%), Gaps = 16/250 (6%)
Frame = +3
Query: 387 IQLNRPKALNALCKGLILELNQALQAFEEDPAVGAIVLTGGEKAFAAGADIKEMQNQTFQ 566
+QLNRP+ NA+ K E+ ED +V++G K F++G D+ +M + Q
Sbjct: 68 VQLNRPEKRNAMNKAFWREMVVCFNKIAEDSDCRVVVISGAGKMFSSGIDLMDMASDLLQ 127
Query: 567 DCYSGGFLSHWDHL--------------SRVRKPVIAAVNGYALGGGCELAMMCDIIYAG 704
W HL + KPVIAA++G +GGG +L CDI Y+
Sbjct: 128 PAGDDSARISW-HLHSLLTRYQETFSVIEKCPKPVIAAIHGGCIGGGVDLITACDIRYST 186
Query: 705 EKAQFGQPEXXXXXXXXXXXXQRLTRAVG-KSLTMEMVLTGDRISAQEAKQAGLVSKIFP 881
+ F E QRL + +G +SL E+ T ++ A EA ++GLVS++FP
Sbjct: 187 RDSFFQVKEVDVGLAADVGTLQRLPKVIGNQSLVNELAYTARKMMADEALESGLVSRLFP 246
Query: 882 -VETLVEEAIQCAEKIASYSKIVTAMAKESVNAAFETSLAEGLKLEKKLFYSTFATEDRK 1058
E++++ A A +I+S S + K ++ + + S+ E L K S T+D
Sbjct: 247 DKESMLDAAFTLAAEISSKSPVAVQSTKINLIYSRDHSVMESLNYMKSWNMSMLQTKDIM 306
Query: 1059 EGMTAFVEKR 1088
+ + A +EK+
Sbjct: 307 KSVQAAIEKK 316
>ref|NP_001069248.2| peroxisomal bifunctional enzyme [Bos taurus].
Length = 723
Score = 100 bits (248), Expect = 3e-21
Identities = 65/187 (34%), Positives = 100/187 (53%)
Frame = +3
Query: 378 VGLIQLNRPKALNALCKGLILELNQALQAFEEDPAVGAIVLTGGEKAFAAGADIKEMQNQ 557
+ LI+L P +NA+ + + ++LQ D V AIV+ G + F AGADI+E +
Sbjct: 11 LALIRLRNPP-VNAISTTVARGIKESLQKAITDDTVKAIVICGADGIFCAGADIREFKVH 69
Query: 558 TFQDCYSGGFLSHWDHLSRVRKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEXX 737
D G + D + R +KPV+AA+ ALGGG ELA+ C A +AQ G PE
Sbjct: 70 KTFDIQLGDIV---DEIQRNKKPVVAAIQKLALGGGLELALGCHYRIAHAEAQVGFPEVT 126
Query: 738 XXXXXXXXXXQRLTRAVGKSLTMEMVLTGDRISAQEAKQAGLVSKIFPVETLVEEAIQCA 917
Q L R VG ++++++G ISA EA + G++ KI + +EE+I+ A
Sbjct: 127 LGILPGARGTQLLPRLVGVPAALDLIISGRHISANEALKLGIIDKIVNSDP-IEESIKFA 185
Query: 918 EKIASYS 938
++I+ S
Sbjct: 186 QRISDQS 192
>ref|NP_001039878.1| 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial precursor [Bos
taurus].
Length = 386
Score = 82.8 bits (203), Expect = 6e-16
Identities = 70/248 (28%), Positives = 115/248 (46%), Gaps = 9/248 (3%)
Frame = +3
Query: 309 LRSLASSAHFEHIVVAKKGKSSNVGLIQLNRPKALNALCKGLILELNQALQAFEEDPAVG 488
L+ L S H + + G+I LNRP+ LN L G+I ++ L+ +E+DP
Sbjct: 23 LQHLKMSNHTDAAAEVLLERKGCAGVITLNRPRFLNTLTLGMIRQIYAQLKKWEQDPKTF 82
Query: 489 AIVLTG-GEKAFAAGADIKEM------QNQTFQDCYSGGFLSHWDHLSRVRKPVIAAVNG 647
I++ G GEKAF AG DI+ + + QD + ++ + + + +KP IA ++G
Sbjct: 83 LIIIKGAGEKAFCAGGDIRALSEARNTNQKMLQDLFREEYILN-NAIDSCQKPYIALIHG 141
Query: 648 YALGGGCELAMMCDIIYAGEKAQFGQPEXXXXXXXXXXXXQRLTRAVGKSLTMEMVLTGD 827
+GGG +++ A EK+ F PE L R GK L + LTG
Sbjct: 142 ITMGGGVGVSVHGQFRVATEKSVFAMPETAIGLFPDVGGGYFLPRLQGK-LGYFLALTGF 200
Query: 828 RISAQEAKQAGLVSKIFPVETL--VEEAIQCAEKIASYSKIVTAMAKESVNAAFETSLAE 1001
R+ ++ AG+ + E L +EE + + S SK A E+ +A +T +
Sbjct: 201 RLKGRDVYTAGIATHFVDFEKLGMLEEDLLA---LKSPSKENIADVLETYHAKSKTDQDK 257
Query: 1002 GLKLEKKL 1025
LE+ +
Sbjct: 258 PFILEEHM 265
>ref|XP_002694023.1| PREDICTED: AU RNA binding protein/enoyl-Coenzyme A hydratase-like
[Bos taurus].
Length = 288
Score = 82.0 bits (201), Expect = 1e-15
Identities = 66/253 (26%), Positives = 109/253 (43%), Gaps = 5/253 (1%)
Frame = +3
Query: 366 KSSNVGLIQLNRPKALNALCKGLILELNQALQAFEEDPAVGAIVLTGGEKA-FAAGADIK 542
++ + ++ +NR A N+L K LI L++A+ A + D V I++ F AGAD+K
Sbjct: 84 ENRGIVVLGINRAYAKNSLSKNLIKMLSRAVDALKSDKKVRTIIVRNEVPGIFCAGADLK 143
Query: 543 EMQNQTFQDCYSGGFLSHWDHLSRVRKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFG 722
E + + G F+S + A +N +GG
Sbjct: 144 ERAKMSSSEV--GPFVSK----------IRAMIN--EIGG-------------------- 169
Query: 723 QPEXXXXXXXXXXXXQRLTRAVGKSLTMEMVLTGDRISAQEAKQAGLVSKIFPV----ET 890
QRL RA+G SL E++ + + QEAK GL+S + +
Sbjct: 170 --------------TQRLPRAIGMSLGKELIFSARVLDGQEAKSVGLISHVLEQNQEGDA 215
Query: 891 LVEEAIQCAEKIASYSKIVTAMAKESVNAAFETSLAEGLKLEKKLFYSTFATEDRKEGMT 1070
+A+ A + + +AK ++N E L GL +E+ + T T+DR EG+
Sbjct: 216 AYRKALDLAREFLPQGPVAMTVAKLAINQGMEVDLVTGLAIEEACYAQTIPTKDRLEGLL 275
Query: 1071 AFVEKRKANFKDQ 1109
AF EKR ++K +
Sbjct: 276 AFKEKRTPHYKGE 288
>ref|XP_002683972.1| PREDICTED: Enoyl-CoA hydratase, mitochondrial precursor,
putative-like, partial [Bos taurus].
Length = 300
Score = 81.6 bits (200), Expect = 1e-15
Identities = 57/175 (32%), Positives = 86/175 (49%), Gaps = 11/175 (6%)
Frame = +3
Query: 372 SNVGLIQLNRPKALNALCKGLILELNQALQAFEEDPAVGAIVLTG-GEKAFAAGADIKEM 548
+++G + LNRP LNA+ ++ +L Q L A+ D V A+VL G GEKAF AG DI+ +
Sbjct: 26 NHIGHLTLNRPAGLNAITLDMVRQLQQQLDAWAADANVHAVVLRGAGEKAFCAGGDIRSL 85
Query: 549 QNQTFQDCYSGGFLSHWDH----------LSRVRKPVIAAVNGYALGGGCELAMMCDIIY 698
D + G H D + RKPV+A ++G+ LGGG L D+
Sbjct: 86 -----YDSFKSGATLHEDFFVEEYALDLTIHHYRKPVLALMDGFVLGGGMGLVQGADLRV 140
Query: 699 AGEKAQFGQPEXXXXXXXXXXXXQRLTRAVGKSLTMEMVLTGDRISAQEAKQAGL 863
EK++ PE L+R G+ L + + ++G +I A +A GL
Sbjct: 141 VTEKSRLAMPEVAIGYFPDVGGSYFLSRIPGE-LGIYLGVSGVQIRAADALYCGL 194
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,406,638
Number of extensions: 1260170
Number of successful extensions: 4821
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 4783
Number of HSP's successfully gapped: 18
Length of query: 408
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 303
Effective length of database: 14,207,134
Effective search space: 4304761602
Effective search space used: 4304761602
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012694
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012694
(1225 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537945.2| PREDICTED: similar to Enoyl-CoA hydratase, mito... 429 e-120
Alignment gi|XP_533549.2| PREDICTED: similar to Methylglutaconyl-CoA hydr... 128 1e-29
Alignment gi|XP_544259.2| PREDICTED: similar to enoyl Coenzyme A hydratas... 121 1e-27
Alignment gi|XP_533678.1| PREDICTED: similar to peroxisomal enoyl-coenzym... 101 2e-21
Alignment gi|XP_545234.1| PREDICTED: similar to enoyl-Coenzyme A, hydrata... 98 1e-20
Alignment gi|XP_867316.1| PREDICTED: similar to peroxisomal enoyl-coenzym... 87 3e-17
Alignment gi|XP_853370.1| PREDICTED: similar to enoyl Coenzyme A hydratas... 84 4e-16
Alignment gi|XP_546818.2| PREDICTED: similar to chromodomain protein, Y-l... 78 2e-14
Alignment gi|XP_848773.1| PREDICTED: similar to chromodomain protein, Y c... 77 3e-14
Alignment gi|XP_856980.1| PREDICTED: similar to chromodomain protein, Y c... 77 3e-14
>ref|XP_537945.2| PREDICTED: similar to Enoyl-CoA hydratase, mitochondrial precursor
(Short chain enoyl-CoA hydratase) (SCEH) (Enoyl-CoA
hydratase 1) [Canis familiaris].
Length = 575
Score = 429 bits (1102), Expect = e-120
Identities = 219/262 (83%), Positives = 236/262 (90%)
Frame = +3
Query: 324 SSAHFEHIVVAKKGKSSNVGLIQLNRPKALNALCKGLILELNQALQAFEEDPAVGAIVLT 503
S A F++I+ KKGK+SNVGLIQLNRPKALNALC GL++ELNQAL+AFE+DPAVGAIVLT
Sbjct: 314 SCADFQYIITEKKGKNSNVGLIQLNRPKALNALCNGLMMELNQALEAFEKDPAVGAIVLT 373
Query: 504 GGEKAFAAGADIKEMQNQTFQDCYSGGFLSHWDHLSRVRKPVIAAVNGYALGGGCELAMM 683
GGEKAFAAGADIKEMQNQTFQDCYS FLSHWD L++V+KPVIAAVNGYALGGGCELAMM
Sbjct: 374 GGEKAFAAGADIKEMQNQTFQDCYSSKFLSHWDQLAQVKKPVIAAVNGYALGGGCELAMM 433
Query: 684 CDIIYAGEKAQFGQPEXXXXXXXXXXXXQRLTRAVGKSLTMEMVLTGDRISAQEAKQAGL 863
CDIIYAGEKAQF QPE QRLTRAVGKSL MEMVLTGDRISAQ+AKQAGL
Sbjct: 434 CDIIYAGEKAQFAQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGL 493
Query: 864 VSKIFPVETLVEEAIQCAEKIASYSKIVTAMAKESVNAAFETSLAEGLKLEKKLFYSTFA 1043
VSKIFPVETLVEEAI+CAEKIAS SKIVTAMAKESVNAAFE +L EG +LEKKLFY+TFA
Sbjct: 494 VSKIFPVETLVEEAIRCAEKIASNSKIVTAMAKESVNAAFEMTLTEGNRLEKKLFYATFA 553
Query: 1044 TEDRKEGMTAFVEKRKANFKDQ 1109
TEDRKEGMTAFVEKRKA+FKDQ
Sbjct: 554 TEDRKEGMTAFVEKRKASFKDQ 575
>ref|XP_533549.2| PREDICTED: similar to Methylglutaconyl-CoA hydratase, mitochondrial
precursor (AU-specific RNA-binding enoyl-CoA hydratase)
(AU-binding protein/enoyl-CoA hydratase) [Canis
familiaris].
Length = 340
Score = 128 bits (322), Expect = 1e-29
Identities = 88/282 (31%), Positives = 133/282 (47%), Gaps = 11/282 (3%)
Frame = +3
Query: 297 GCPALRSLASSAHFEHIVVAKKGKSSNVGLIQL--NRPKALNALCKGLILELNQALQAFE 470
G R +S E + + + N G++ L NR A N K L+ L++A+ A +
Sbjct: 61 GSAPRRGYSSEVKTEDELRVRYLEEENRGIVVLGINRAYAKNTFSKSLVKMLSKAVDALK 120
Query: 471 EDPAVGAIVLTGGEKA-FAAGADIKEMQNQTFQDCYSGGFLSHW----DHLSRVRKPVIA 635
D V I++ F AGAD+KE + G F+S D ++ + P IA
Sbjct: 121 SDKKVRTIIVRSEVPGIFCAGADLKERVKMNPSEV--GPFVSKIRAVIDEIANLPVPTIA 178
Query: 636 AVNGYALGGGCELAMMCDIIYAGEKAQFGQPEXXXXXXXXXXXXQRLTRAVGKSLTMEMV 815
A++G ALGGG ELA+ CDI A A+ G E QRL RA+G SL E++
Sbjct: 179 AIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELI 238
Query: 816 LTGDRISAQEAKQAGLVSKIFPV----ETLVEEAIQCAEKIASYSKIVTAMAKESVNAAF 983
+ + QEAK GL+S + + +A+ A + + +AK ++N
Sbjct: 239 FSARVLDGQEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAVRVAKLAINQGM 298
Query: 984 ETSLAEGLKLEKKLFYSTFATEDRKEGMTAFVEKRKANFKDQ 1109
E L GL +E+ + T T+DR EG+ AF EKR +K +
Sbjct: 299 EVDLVTGLAIEEACYAQTIPTKDRLEGLLAFKEKRPPRYKGE 340
>ref|XP_544259.2| PREDICTED: similar to enoyl Coenzyme A hydratase domain containing 3
[Canis familiaris].
Length = 261
Score = 121 bits (304), Expect = 1e-27
Identities = 77/238 (32%), Positives = 120/238 (50%), Gaps = 3/238 (1%)
Frame = +3
Query: 387 IQLNRPKALNALCKGLILELNQALQAFEEDPAVGAIVLTGGEKAFAAGADIKEMQNQTFQ 566
I L+ PK NAL ++ L L E + I+++ F++G D+KE+ ++
Sbjct: 20 IVLSDPKKRNALSLAMLKSLQTDLLHESESKDLRVIIISAEGPVFSSGHDLKELTDERSP 79
Query: 567 DCYSGGFLSHWDHLSRVRK---PVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEXX 737
D ++ F + + + ++ P+IA VNG A GC+L CDI A +K+ F P
Sbjct: 80 DYHAEVFQTCSEVMMLIQNHPVPIIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVN 139
Query: 738 XXXXXXXXXXQRLTRAVGKSLTMEMVLTGDRISAQEAKQAGLVSKIFPVETLVEEAIQCA 917
L RAV + + +EM+ TG+ ISAQEA GL+SK+ P E L EE ++ A
Sbjct: 140 IGLFCSTPGVA-LGRAVPRKVALEMLFTGEPISAQEALLHGLLSKVVPAEQLEEETMRIA 198
Query: 918 EKIASYSKIVTAMAKESVNAAFETSLAEGLKLEKKLFYSTFATEDRKEGMTAFVEKRK 1091
KIAS S+ V ++ K + L L + A +D +EG+ AF++KRK
Sbjct: 199 RKIASLSRRVVSLGKAAFYRQLPQDLRTAYHLTSQTMVDNVALQDGQEGIKAFIQKRK 256
>ref|XP_533678.1| PREDICTED: similar to peroxisomal enoyl-coenzyme A hydratase-like
protein isoform 1 [Canis familiaris].
Length = 328
Score = 101 bits (251), Expect = 2e-21
Identities = 71/250 (28%), Positives = 117/250 (46%), Gaps = 15/250 (6%)
Frame = +3
Query: 387 IQLNRPKALNALCKGLILELNQALQAFEEDPAVGAIVLTGGEKAFAAGADIKEMQNQTFQ 566
+QLNRP+ NA+ K E+ + +DP A+V++G K F AG D+ +M ++ Q
Sbjct: 70 VQLNRPEKRNAMNKAFWREMVECFNKIAQDPDCRAVVISGAGKVFTAGIDLMDMASEILQ 129
Query: 567 DCYSGGFLSHWD-------------HLSRVRKPVIAAVNGYALGGGCELAMMCDIIYAGE 707
W+ + + KPVIAA++G +G G +L CDI Y +
Sbjct: 130 PQGDDVARISWNLRNLITRYQETFSVIEKCPKPVIAAIHGACIGAGVDLITACDIRYCAQ 189
Query: 708 KAQFGQPEXXXXXXXXXXXXQRLTRAVG-KSLTMEMVLTGDRISAQEAKQAGLVSKIFP- 881
A F E QRL + +G +SL E+ T + A EA +GLVS++FP
Sbjct: 190 DAFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTCRTMMADEALASGLVSRVFPD 249
Query: 882 VETLVEEAIQCAEKIASYSKIVTAMAKESVNAAFETSLAEGLKLEKKLFYSTFATEDRKE 1061
E +++ A A +I++ S + K ++ + + EGL S T+D +
Sbjct: 250 KEGMLDAAFTLAAEISTKSPVAVQSTKINLIYSRNHPVTEGLNYMATWNMSMLQTQDIIK 309
Query: 1062 GMTAFVEKRK 1091
+ A +EK++
Sbjct: 310 SVQAAMEKKE 319
>ref|XP_545234.1| PREDICTED: similar to enoyl-Coenzyme A, hydratase/3-hydroxyacyl
Coenzyme A dehydrogenase [Canis familiaris].
Length = 723
Score = 98.2 bits (243), Expect = 1e-20
Identities = 64/187 (34%), Positives = 95/187 (50%)
Frame = +3
Query: 378 VGLIQLNRPKALNALCKGLILELNQALQAFEEDPAVGAIVLTGGEKAFAAGADIKEMQNQ 557
+ LI+L P +NA+ ++ + LQ D V AIVL G + F+AGADI
Sbjct: 11 LALIRLRNPP-VNAISTAVLRGIKDGLQKATTDRTVKAIVLCGADGKFSAGADIHSFGEP 69
Query: 558 TFQDCYSGGFLSHWDHLSRVRKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEXX 737
D G + D + R KPV+AA+ G ALGGG ELA+ C A +AQ G PE
Sbjct: 70 RKSDFVLGHIV---DEIQRTEKPVVAAIQGLALGGGLELALGCHYRIAHAEAQIGFPEVT 126
Query: 738 XXXXXXXXXXQRLTRAVGKSLTMEMVLTGDRISAQEAKQAGLVSKIFPVETLVEEAIQCA 917
Q L R +G ++++ +G + A EA + G++ +I + VEEAI+ A
Sbjct: 127 LGILPGARGTQLLPRLIGVPAALDLITSGRHVLADEALKLGILDEIVNSDP-VEEAIKLA 185
Query: 918 EKIASYS 938
++I+ S
Sbjct: 186 QRISDQS 192
>ref|XP_867316.1| PREDICTED: similar to peroxisomal enoyl-coenzyme A hydratase-like
protein isoform 2 [Canis familiaris].
Length = 248
Score = 87.0 bits (214), Expect = 3e-17
Identities = 63/232 (27%), Positives = 106/232 (45%), Gaps = 15/232 (6%)
Frame = +3
Query: 441 ELNQALQAFEEDPAVGAIVLTGGEKAFAAGADIKEMQNQTFQDCYSGGFLSHWDH----- 605
E+ + +DP A+V++G K F AG D+ +M ++ Q W+
Sbjct: 8 EMVECFNKIAQDPDCRAVVISGAGKVFTAGIDLMDMASEILQPQGDDVARISWNLRNLIT 67
Query: 606 --------LSRVRKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEXXXXXXXXXX 761
+ + KPVIAA++G +G G +L CDI Y + A F E
Sbjct: 68 RYQETFSVIEKCPKPVIAAIHGACIGAGVDLITACDIRYCAQDAFFQVKEVDIGLAADVG 127
Query: 762 XXQRLTRAVG-KSLTMEMVLTGDRISAQEAKQAGLVSKIFP-VETLVEEAIQCAEKIASY 935
QRL + +G +SL E+ T + A EA +GLVS++FP E +++ A A +I++
Sbjct: 128 TLQRLPKIIGNQSLVNELAFTCRTMMADEALASGLVSRVFPDKEGMLDAAFTLAAEISTK 187
Query: 936 SKIVTAMAKESVNAAFETSLAEGLKLEKKLFYSTFATEDRKEGMTAFVEKRK 1091
S + K ++ + + EGL S T+D + + A +EK++
Sbjct: 188 SPVAVQSTKINLIYSRNHPVTEGLNYMATWNMSMLQTQDIIKSVQAAMEKKE 239
>ref|XP_853370.1| PREDICTED: similar to enoyl Coenzyme A hydratase domain containing
2 [Canis familiaris].
Length = 147
Score = 83.6 bits (205), Expect = 4e-16
Identities = 53/149 (35%), Positives = 76/149 (51%), Gaps = 5/149 (3%)
Frame = +3
Query: 393 LNRPKALNALCKGLILELNQALQAFEEDPAVGAIVLTGGEKA-FAAGADIKEMQNQTFQD 569
+NRP A NAL L+ +L +AL ED V ++ G K F AGAD+KE + + +
Sbjct: 1 MNRPSACNALGNVLVNQLLEALAQLREDQQVRVLLFRSGVKGVFCAGADLKEREQMS--E 58
Query: 570 CYSGGFLSH----WDHLSRVRKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEXX 737
G F+ + ++ P IAA++G+ALGGG ELA+ CD+ A A G E
Sbjct: 59 AEVGIFVQRLRGLMNEIAAFPAPTIAAMDGFALGGGLELALACDLRVAASSAVMGLIETT 118
Query: 738 XXXXXXXXXXQRLTRAVGKSLTMEMVLTG 824
QRL R +G +L E++ TG
Sbjct: 119 RGLLPGAGGTQRLPRCIGVALAKELIFTG 147
>ref|XP_546818.2| PREDICTED: similar to chromodomain protein, Y-like 2 [Canis
familiaris].
Length = 522
Score = 77.8 bits (190), Expect = 2e-14
Identities = 62/239 (25%), Positives = 115/239 (48%), Gaps = 7/239 (2%)
Frame = +3
Query: 306 ALRSLASSAHFEHIVVAKKGKSSNVGLIQLNRPKALNALCKGLILELNQAL-QAFEEDP- 479
++R S+ F IVV K+ +++ L NAL ++ E+ +AL A +D
Sbjct: 255 SVRQNESNCRFRDIVVRKEEGFTHILLSSQTSDN--NALTPEIMKEVRRALCNAATDDSK 312
Query: 480 -----AVGAIVLTGGEKAFAAGADIKEMQNQTFQDCYSGGFLSHWDHLSRVRKPVIAAVN 644
AVG++ +G + ++ G + + ++ + + + +KP++ A+N
Sbjct: 313 LLLLSAVGSVFCSGLDYSYLIGRLSSDRRKESTR--IAEAIRDFVKAFIQFKKPIVVAIN 370
Query: 645 GYALGGGCELAMMCDIIYAGEKAQFGQPEXXXXXXXXXXXXQRLTRAVGKSLTMEMVLTG 824
G ALG G + +CDI++A EKA F P + +G +L EM+ G
Sbjct: 371 GPALGLGASILPLCDIVWASEKAWFQTPYATIRLTPAGCSSYTFPQILGVALANEMLFCG 430
Query: 825 DRISAQEAKQAGLVSKIFPVETLVEEAIQCAEKIASYSKIVTAMAKESVNAAFETSLAE 1001
+++AQEA GLVS++F T +E + +++AS S +V +K V + ++ L +
Sbjct: 431 RKLTAQEACSRGLVSQVFWPTTFSQEVMLRVKEMASCSAVVLEESKCLVRSFLKSVLED 489
>ref|XP_848773.1| PREDICTED: similar to chromodomain protein, Y chromosome-like isoform
a isoform 2 [Canis familiaris].
Length = 587
Score = 77.4 bits (189), Expect = 3e-14
Identities = 61/271 (22%), Positives = 126/271 (46%), Gaps = 6/271 (2%)
Frame = +3
Query: 306 ALRSLASSAHFEHIVVAKKGKSSNVGLIQLNRPKALNALCKGLILELNQALQAFEEDPAV 485
++R S+ + IVV K+ +++ L + N+L ++ E+ AL D +
Sbjct: 320 SVRQTESAYRYRDIVVRKQDGFTHILLS--TKSSENNSLNPEVMKEVQSALSTAAADDSK 377
Query: 486 GAIVLTGGEKAFAAGAD----IKEMQNQTFQDC--YSGGFLSHWDHLSRVRKPVIAAVNG 647
++L+ F G D I+ + + ++ + + + + +KP+I AVNG
Sbjct: 378 -LVLLSAVGSVFCCGLDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNG 436
Query: 648 YALGGGCELAMMCDIIYAGEKAQFGQPEXXXXXXXXXXXXQRLTRAVGKSLTMEMVLTGD 827
A+G G + +CD+++A EKA F P + +G + EM+L+G
Sbjct: 437 PAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGR 496
Query: 828 RISAQEAKQAGLVSKIFPVETLVEEAIQCAEKIASYSKIVTAMAKESVNAAFETSLAEGL 1007
+++AQEA GLVS++F T +E + +++AS + +V +K V + L +
Sbjct: 497 KLTAQEACGKGLVSQVFWPGTFTQEVMVRIKELASCNPVVLEESKALVRCNMKMELEQAN 556
Query: 1008 KLEKKLFYSTFATEDRKEGMTAFVEKRKANF 1100
+ E ++ + + + M +++++ F
Sbjct: 557 ERECEVLKKIWGSAQGMDSMLKYLQRKIDEF 587
>ref|XP_856980.1| PREDICTED: similar to chromodomain protein, Y chromosome-like isoform
a isoform 3 [Canis familiaris].
Length = 586
Score = 77.4 bits (189), Expect = 3e-14
Identities = 61/271 (22%), Positives = 126/271 (46%), Gaps = 6/271 (2%)
Frame = +3
Query: 306 ALRSLASSAHFEHIVVAKKGKSSNVGLIQLNRPKALNALCKGLILELNQALQAFEEDPAV 485
++R S+ + IVV K+ +++ L + N+L ++ E+ AL D +
Sbjct: 319 SVRQTESAYRYRDIVVRKQDGFTHILLS--TKSSENNSLNPEVMKEVQSALSTAAADDSK 376
Query: 486 GAIVLTGGEKAFAAGAD----IKEMQNQTFQDC--YSGGFLSHWDHLSRVRKPVIAAVNG 647
++L+ F G D I+ + + ++ + + + + +KP+I AVNG
Sbjct: 377 -LVLLSAVGSVFCCGLDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNG 435
Query: 648 YALGGGCELAMMCDIIYAGEKAQFGQPEXXXXXXXXXXXXQRLTRAVGKSLTMEMVLTGD 827
A+G G + +CD+++A EKA F P + +G + EM+L+G
Sbjct: 436 PAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGR 495
Query: 828 RISAQEAKQAGLVSKIFPVETLVEEAIQCAEKIASYSKIVTAMAKESVNAAFETSLAEGL 1007
+++AQEA GLVS++F T +E + +++AS + +V +K V + L +
Sbjct: 496 KLTAQEACGKGLVSQVFWPGTFTQEVMVRIKELASCNPVVLEESKALVRCNMKMELEQAN 555
Query: 1008 KLEKKLFYSTFATEDRKEGMTAFVEKRKANF 1100
+ E ++ + + + M +++++ F
Sbjct: 556 ERECEVLKKIWGSAQGMDSMLKYLQRKIDEF 586
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,201,341
Number of extensions: 1109953
Number of successful extensions: 4975
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 4935
Number of HSP's successfully gapped: 18
Length of query: 408
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 303
Effective length of database: 15,374,224
Effective search space: 4658389872
Effective search space used: 4658389872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012694
(1225 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001177104.1| enoyl-CoA hydratase, mitochondrial [Sus scro... 509 e-144
Alignment gi|XP_003362049.1| PREDICTED: enoyl-CoA hydratase, mitochondria... 466 e-131
Alignment gi|XP_001928827.3| PREDICTED: methylglutaconyl-CoA hydratase, m... 129 3e-30
Alignment gi|XP_003128050.2| PREDICTED: enoyl-CoA hydratase domain-contai... 122 4e-28
Alignment gi|NP_001038072.1| delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase,... 115 6e-26
Alignment gi|XP_003130864.2| PREDICTED: hypothetical protein LOC100513945... 113 2e-25
Alignment gi|XP_003358782.1| PREDICTED: peroxisomal bifunctional enzyme [... 100 2e-21
Alignment gi|XP_001927544.3| PREDICTED: chromodomain Y-like protein, part... 77 2e-14
Alignment gi|NP_001106914.1| enoyl-CoA delta isomerase 2, mitochondrial [... 76 4e-14
Alignment gi|NP_999127.1| trifunctional enzyme subunit alpha, mitochondri... 74 2e-13
>ref|NP_001177104.1| enoyl-CoA hydratase, mitochondrial [Sus scrofa].
Length = 290
Score = 509 bits (1310), Expect = e-144
Identities = 261/273 (95%), Positives = 261/273 (95%)
Frame = +3
Query: 291 WPGCPALRSLASSAHFEHIVVAKKGKSSNVGLIQLNRPKALNALCKGLILELNQALQAFE 470
WPGCPALRSLASSAHFEHIVVAKKGKSSNVGLIQLNRPKALNALCKGLILELNQALQAFE
Sbjct: 18 WPGCPALRSLASSAHFEHIVVAKKGKSSNVGLIQLNRPKALNALCKGLILELNQALQAFE 77
Query: 471 EDPAVGAIVLTGGEKAFAAGADIKEMQNQTFQDCYSGGFLSHWDHLSRVRKPVIAAVNGY 650
EDPAVGAIVLTGGEKAFAAGADIKEMQNQTFQDCYSGGFLSHWDHLSRVRKPVIAAVNGY
Sbjct: 78 EDPAVGAIVLTGGEKAFAAGADIKEMQNQTFQDCYSGGFLSHWDHLSRVRKPVIAAVNGY 137
Query: 651 ALGGGCELAMMCDIIYAGEKAQFGQPEXXXXXXXXXXXXQRLTRAVGKSLTMEMVLTGDR 830
ALGGGCELAMMCDIIYAGEKAQFGQPE QRLTRAVGKSLTMEMVLTGDR
Sbjct: 138 ALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGTGGTQRLTRAVGKSLTMEMVLTGDR 197
Query: 831 ISAQEAKQAGLVSKIFPVETLVEEAIQCAEKIASYSKIVTAMAKESVNAAFETSLAEGLK 1010
ISAQEAKQAGLVSKIFPVETLVEEAIQCAEKIASYSKIVTAMAKESVNAAFETSLAEGLK
Sbjct: 198 ISAQEAKQAGLVSKIFPVETLVEEAIQCAEKIASYSKIVTAMAKESVNAAFETSLAEGLK 257
Query: 1011 LEKKLFYSTFATEDRKEGMTAFVEKRKANFKDQ 1109
LEKKLFYSTFATEDRKEGMTAFVEKRKANFKDQ
Sbjct: 258 LEKKLFYSTFATEDRKEGMTAFVEKRKANFKDQ 290
>ref|XP_003362049.1| PREDICTED: enoyl-CoA hydratase, mitochondrial-like [Sus scrofa].
Length = 341
Score = 466 bits (1198), Expect = e-131
Identities = 243/267 (91%), Positives = 244/267 (91%)
Frame = +3
Query: 309 LRSLASSAHFEHIVVAKKGKSSNVGLIQLNRPKALNALCKGLILELNQALQAFEEDPAVG 488
L S + AHFEHIVVAKKGKSSNVGLIQLNR CKGLILELNQALQAFEEDPAVG
Sbjct: 75 LWSPSPGAHFEHIVVAKKGKSSNVGLIQLNRXXXXXXXCKGLILELNQALQAFEEDPAVG 134
Query: 489 AIVLTGGEKAFAAGADIKEMQNQTFQDCYSGGFLSHWDHLSRVRKPVIAAVNGYALGGGC 668
AIVLTGGEKAFAAGADIKEMQNQTFQDCYSGGFLSHWDHLSRVRKPVIAAVNGYALGGGC
Sbjct: 135 AIVLTGGEKAFAAGADIKEMQNQTFQDCYSGGFLSHWDHLSRVRKPVIAAVNGYALGGGC 194
Query: 669 ELAMMCDIIYAGEKAQFGQPEXXXXXXXXXXXXQRLTRAVGKSLTMEMVLTGDRISAQEA 848
ELAMMCDIIYAGEKAQFGQPE QRLTRAVGKSLTMEMVLTGDRISAQEA
Sbjct: 195 ELAMMCDIIYAGEKAQFGQPELLSETCPRTGGTQRLTRAVGKSLTMEMVLTGDRISAQEA 254
Query: 849 KQAGLVSKIFPVETLVEEAIQCAEKIASYSKIVTAMAKESVNAAFETSLAEGLKLEKKLF 1028
KQAGLVSKIFPVETLVEEAIQCAEKIASYSKIVTAMAKESVNAAFETSLAEGLKLEKKLF
Sbjct: 255 KQAGLVSKIFPVETLVEEAIQCAEKIASYSKIVTAMAKESVNAAFETSLAEGLKLEKKLF 314
Query: 1029 YSTFATEDRKEGMTAFVEKRKANFKDQ 1109
YSTFATEDRKEGMTAFVEKRKANFKDQ
Sbjct: 315 YSTFATEDRKEGMTAFVEKRKANFKDQ 341
>ref|XP_001928827.3| PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial [Sus
scrofa].
Length = 338
Score = 129 bits (324), Expect = 3e-30
Identities = 88/277 (31%), Positives = 135/277 (48%), Gaps = 11/277 (3%)
Frame = +3
Query: 312 RSLASSAHFEHIVVAKKGKSSNVGLIQL--NRPKALNALCKGLILELNQALQAFEEDPAV 485
R +S A E + + + N G++ L NR A N+L K L+ L++A+ A + D V
Sbjct: 64 RGYSSEAKTEDELRVRYLEEENRGIVVLGINRAYAKNSLSKNLVKMLSKAVDALKSDKKV 123
Query: 486 GAIVLTGGEKA-FAAGADIKEMQNQTFQDCYSGGFLSHW----DHLSRVRKPVIAAVNGY 650
I++ F AGAD+KE + G F+S + ++ + P IAA++G
Sbjct: 124 RTIIVRSEVPGIFCAGADLKERVKMHSSEV--GPFVSKLRAVINEIANLPVPTIAAIDGL 181
Query: 651 ALGGGCELAMMCDIIYAGEKAQFGQPEXXXXXXXXXXXXQRLTRAVGKSLTMEMVLTGDR 830
ALGGG ELA+ CDI A A+ G E QRL RA+G SL E++ +
Sbjct: 182 ALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARV 241
Query: 831 ISAQEAKQAGLVSKIFPV----ETLVEEAIQCAEKIASYSKIVTAMAKESVNAAFETSLA 998
+ QEAK GL+S + + +A+ A + + +AK ++N E L
Sbjct: 242 LDGQEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAIRVAKLAINQGMEVDLV 301
Query: 999 EGLKLEKKLFYSTFATEDRKEGMTAFVEKRKANFKDQ 1109
GL +E+ + T T+DR EG+ AF EKR +K +
Sbjct: 302 TGLAIEEACYAQTVPTKDRLEGLLAFKEKRTPRYKGE 338
>ref|XP_003128050.2| PREDICTED: enoyl-CoA hydratase domain-containing protein 2,
mitochondrial-like isoform 1 [Sus scrofa].
Length = 275
Score = 122 bits (306), Expect = 4e-28
Identities = 80/247 (32%), Positives = 119/247 (48%), Gaps = 9/247 (3%)
Frame = +3
Query: 387 IQLNRPKALNALCKGLILELNQALQAFEEDPAVGAIVLTGGEKA-FAAGADIKEMQNQTF 563
I +NRP A NAL + +L +AL ED V ++ G K F AGAD+KE + +
Sbjct: 28 ILMNRPSARNALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKEREQMS- 86
Query: 564 QDCYSGGFLSH----WDHLSRVRKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPE 731
+ G F+ + ++ P IAA++G+ALGGG ELA+ CD+ A A G E
Sbjct: 87 -EAEVGVFVQRLRGLMNEIAAFPAPTIAAMDGFALGGGLELALACDLRVAASSAVMGLIE 145
Query: 732 XXXXXXXXXXXXQRLTRAVGKSLTMEMVLTGDRISAQEAKQAGLVSKIFPV----ETLVE 899
QRL R +G +L E++ TG R+S +A+ GLV+
Sbjct: 146 TTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAVAQNEEGNAAYH 205
Query: 900 EAIQCAEKIASYSKIVTAMAKESVNAAFETSLAEGLKLEKKLFYSTFATEDRKEGMTAFV 1079
A+ A++I + I + K +++ E +A G+ +E + T DR EGM AF
Sbjct: 206 RALALAQEILPQAPIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIPTRDRLEGMAAFR 265
Query: 1080 EKRKANF 1100
EKR F
Sbjct: 266 EKRTPKF 272
>ref|NP_001038072.1| delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial [Sus
scrofa].
Length = 322
Score = 115 bits (287), Expect = 6e-26
Identities = 79/250 (31%), Positives = 125/250 (50%), Gaps = 15/250 (6%)
Frame = +3
Query: 387 IQLNRPKALNALCKGLILELNQALQAFEEDPAVGAIVLTGGEKAFAAGADIKEMQNQTFQ 566
+QLNRP+ NA+ + E+ +DP A+V++G K F +G D+ +M + FQ
Sbjct: 64 VQLNRPEKRNAMNRAFWREMVVCFNKIAQDPDCRAVVISGAGKMFTSGIDLVDMASDIFQ 123
Query: 567 ---------DCYSGGFLSHWDH----LSRVRKPVIAAVNGYALGGGCELAMMCDIIYAGE 707
+ +S + + + KPVIAA++G +GGG +L CDI Y +
Sbjct: 124 PQGEDVARISWHLHNLISKYQETFSVIEKCPKPVIAAIHGGCIGGGVDLITACDIRYCAQ 183
Query: 708 KAQFGQPEXXXXXXXXXXXXQRLTRAVG-KSLTMEMVLTGDRISAQEAKQAGLVSKIFP- 881
A F E QRL + +G +SL E+ T ++ A EA +GLVS+IFP
Sbjct: 184 DAFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTARKMMADEALNSGLVSRIFPD 243
Query: 882 VETLVEEAIQCAEKIASYSKIVTAMAKESVNAAFETSLAEGLKLEKKLFYSTFATEDRKE 1061
E L+E A+ A +IAS S + K ++ + + S+AEGL K S T+D +
Sbjct: 244 QEVLLEAALALAAEIASKSPVAVQGTKINLLYSRDHSVAEGLNYMKSWNMSMLQTKDVIK 303
Query: 1062 GMTAFVEKRK 1091
+ A +EK++
Sbjct: 304 SVQAAMEKKE 313
>ref|XP_003130864.2| PREDICTED: hypothetical protein LOC100513945 [Sus scrofa].
Length = 845
Score = 113 bits (282), Expect = 2e-25
Identities = 77/241 (31%), Positives = 122/241 (50%), Gaps = 7/241 (2%)
Frame = +3
Query: 387 IQLNRPKALNALCKGLILELNQALQAFEEDPAVGAIVLTGGEKAFAAGADIKEMQNQTFQ 566
I LN PK NAL ++ L L E + IV++ F++G D+KE+ +
Sbjct: 604 IVLNNPKRRNALSLAMLKSLQSDLLHDAESRDLKVIVISAEGPVFSSGHDLKELTAEQGP 663
Query: 567 DCYSGGFLSHWDHLSRVRK---PVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEXX 737
D ++ F + + + ++ P+IA VNG A GC+L CDI A +K+ F P
Sbjct: 664 DYHAEVFRACSEVMMLIQNHPVPIIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVT 723
Query: 738 XXXXXXXXXXQRLTRAVGKSLTMEMVLTGDRISAQEAKQAGLVSKIFPVETLVEEAIQCA 917
+ RA+ + + +EM+ TG+ +SAQEA GL+S++ P E L EE ++ A
Sbjct: 724 IGLFCSTPGVA-VGRALPRKVALEMLFTGEPMSAQEALLHGLLSRVVPEERLEEETMRIA 782
Query: 918 EKIASYSKIVTAMAKESVNAAFETSLAEGLK----LEKKLFYSTFATEDRKEGMTAFVEK 1085
K+AS S+ V ++ K AAF LA+ L+ L + D +EG+ AF++K
Sbjct: 783 RKVASLSRPVLSLGK----AAFYRQLAQDLRTAYHLASQTMVDNLGLPDAQEGIQAFLQK 838
Query: 1086 R 1088
R
Sbjct: 839 R 839
>ref|XP_003358782.1| PREDICTED: peroxisomal bifunctional enzyme [Sus scrofa].
Length = 723
Score = 100 bits (249), Expect = 2e-21
Identities = 72/237 (30%), Positives = 116/237 (48%), Gaps = 2/237 (0%)
Frame = +3
Query: 378 VGLIQLNRPKALNALCKGLILELNQALQAFEEDPAVGAIVLTGGEKAFAAGADIKEMQNQ 557
+ L++L P +NAL ++ + + LQ D V AIV+ G + F+AGADI
Sbjct: 11 LALLRLRNPP-VNALSVSVLHGIKEGLQKALTDHTVKAIVICGTDGIFSAGADIHGFSAH 69
Query: 558 TFQDCYSGGFLSHWDHLSRVRKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEXX 737
D G + D + R KPV+AA+ G ALGGG ELA+ C A +AQ G PE
Sbjct: 70 KTSDLTLGDIV---DKIQRYEKPVVAAIQGLALGGGLELALGCHYRIAHAEAQVGFPEVT 126
Query: 738 XXXXXXXXXXQRLTRAVGKSLTMEMVLTGDRISAQEAKQAGLVSKIFPVETLVEEAIQCA 917
Q L R +G ++++ +G ISA EA++ G++ ++ + VEEAI+ A
Sbjct: 127 LGILPGARGTQLLPRLIGVPAALDLITSGRHISANEARKLGILDEVVNSDP-VEEAIRFA 185
Query: 918 EKIASYSKIVTAMAKESVNAA--FETSLAEGLKLEKKLFYSTFATEDRKEGMTAFVE 1082
+++ + + +SV + +T +E L +K + A E + A V+
Sbjct: 186 QRVLDQTLESRRICNKSVQSLSNMDTIFSEALLKMRKQYPGCLAQETCVRAVQAAVQ 242
>ref|XP_001927544.3| PREDICTED: chromodomain Y-like protein, partial [Sus scrofa].
Length = 182
Score = 77.0 bits (188), Expect = 2e-14
Identities = 43/161 (26%), Positives = 83/161 (51%)
Frame = +3
Query: 618 RKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEXXXXXXXXXXXXQRLTRAVGKS 797
+KP+I AVNG A+G G + +CD+++A EKA F P + +G +
Sbjct: 22 KKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGA 81
Query: 798 LTMEMVLTGDRISAQEAKQAGLVSKIFPVETLVEEAIQCAEKIASYSKIVTAMAKESVNA 977
EM+L+G +++AQEA GLVS++F T +E + +++AS + +V +K V
Sbjct: 82 SANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVMVRIKELASCNPVVLEESKALVRC 141
Query: 978 AFETSLAEGLKLEKKLFYSTFATEDRKEGMTAFVEKRKANF 1100
+ + L + + E ++ + + + M +++++ F
Sbjct: 142 SMKPELEQANERECEVLRKIWGSAQGMDSMLKYLQRKIDEF 182
>ref|NP_001106914.1| enoyl-CoA delta isomerase 2, mitochondrial [Sus scrofa].
Length = 394
Score = 75.9 bits (185), Expect = 4e-14
Identities = 61/240 (25%), Positives = 109/240 (45%), Gaps = 6/240 (2%)
Frame = +3
Query: 387 IQLNRPKALNALCKGLILELNQALQAFEEDPAVGAIVLTGGEKAFAAGADI---KEMQNQ 557
I+LNRP NAL + ++ +AL+A ED + VLTG + +G D+ K++
Sbjct: 153 IRLNRPAKKNALTTQMYRDIMRALEAASEDSS-RITVLTGSGDYYCSGNDLTNFKDIPPD 211
Query: 558 TFQDCYSGGFLSHWDHLSRV---RKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQP 728
++ + D + R KP+IA VNG A+G L + D++YA ++A F P
Sbjct: 212 KVEERAQSSAVLLRDFVDRFIDFPKPLIAVVNGPAVGISVTLLGLFDVVYASDRATFHTP 271
Query: 729 EXXXXXXXXXXXXQRLTRAVGKSLTMEMVLTGDRISAQEAKQAGLVSKIFPVETLVEEAI 908
+ +G S EM++ G +++A+EA GLV+ +FP +T +E
Sbjct: 272 FSHLGQSPEGCSSYIFPKMMGPSKAAEMLIFGKKLTAREALAQGLVTAVFPDDTFQKEVW 331
Query: 909 QCAEKIASYSKIVTAMAKESVNAAFETSLAEGLKLEKKLFYSTFATEDRKEGMTAFVEKR 1088
+ A +AK + + L E ++ + +++ + AF+ K+
Sbjct: 332 ARLKAYAKLPPNAMRIAKRLMRHQEKEKLHAVNAEESRVLAERWVSDECITAIVAFLSKK 391
>ref|NP_999127.1| trifunctional enzyme subunit alpha, mitochondrial [Sus scrofa].
Length = 763
Score = 73.9 bits (180), Expect = 2e-13
Identities = 66/230 (28%), Positives = 108/230 (46%), Gaps = 15/230 (6%)
Frame = +3
Query: 363 GKSSNVGLIQLNRPKA-LNALCKGLILELNQAL-QAFEEDPAVGAIVLTGGEKAFAAGAD 536
G +V +I++N P + +N L + L E + + + + A++++ F AGAD
Sbjct: 44 GVKGDVAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGAD 103
Query: 537 IKEMQNQTFQD---CYSGGFLSHWDHLSRVRKPVIAAVNGYALGGGCELAMMCD--IIYA 701
I + T S ++ L + KP++AA+NG LGGG ELA+ C I
Sbjct: 104 INMLSACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATK 163
Query: 702 GEKAQFGQPEXXXXXXXXXXXXQRLTRAVGKSLTMEMVLTGDRISAQEAKQAGLVSKIFP 881
+K G PE QRL + VG +M+LTG I A +AK+ GLV ++
Sbjct: 164 DKKTVLGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQL-- 221
Query: 882 VETL-------VEEAIQCAEKIA-SYSKIVTAMAKESVNAAFETSLAEGL 1007
VE L E I+ E++A +++K +A + ++ + L E L
Sbjct: 222 VEPLGPGLKPPEERTIEYLEEVAVTFAK---GLADKKISPKRDKGLVEKL 268
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,847,541
Number of extensions: 1113289
Number of successful extensions: 3380
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 3362
Number of HSP's successfully gapped: 11
Length of query: 408
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 307
Effective length of database: 8,829,335
Effective search space: 2710605845
Effective search space used: 2710605845
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012694
(1225 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_444349.1| enoyl-CoA hydratase, mitochondrial precursor [M... 436 e-122
Alignment gi|NP_057918.2| methylglutaconyl-CoA hydratase, mitochondrial p... 129 6e-30
Alignment gi|NP_081004.2| enoyl-CoA hydratase domain-containing protein 2... 127 1e-29
Alignment gi|NP_077170.2| enoyl-CoA hydratase domain-containing protein 3... 119 4e-27
Alignment gi|NP_058052.1| delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mi... 100 2e-21
Alignment gi|NP_076226.2| peroxisomal bifunctional enzyme [Mus musculus]. 93 5e-19
Alignment gi|NP_666220.1| 3-hydroxyisobutyryl-CoA hydrolase, mitochondria... 84 2e-16
Alignment gi|NP_083717.1| chromodomain Y-like protein 2 [Mus musculus]. 79 7e-15
Alignment gi|NP_849209.1| trifunctional enzyme subunit alpha, mitochondri... 77 4e-14
Alignment gi|NP_001116858.1| chromodomain Y-like protein isoform 2 [Mus m... 76 5e-14
>ref|NP_444349.1| enoyl-CoA hydratase, mitochondrial precursor [Mus musculus].
Length = 290
Score = 436 bits (1121), Expect = e-122
Identities = 221/269 (82%), Positives = 239/269 (88%)
Frame = +3
Query: 300 CPALRSLASSAHFEHIVVAKKGKSSNVGLIQLNRPKALNALCKGLILELNQALQAFEEDP 479
CP LR AS A+F++I+ KKGK+S+VGLIQLNRPKALNALC GLI ELNQAL+ FE+DP
Sbjct: 21 CPELRRFASGANFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEQDP 80
Query: 480 AVGAIVLTGGEKAFAAGADIKEMQNQTFQDCYSGGFLSHWDHLSRVRKPVIAAVNGYALG 659
AVGAIVLTGG+KAFAAGADIKEMQN+TFQDCYS FLSHWDH++RV+KPVIAAVNGYALG
Sbjct: 81 AVGAIVLTGGDKAFAAGADIKEMQNRTFQDCYSSKFLSHWDHITRVKKPVIAAVNGYALG 140
Query: 660 GGCELAMMCDIIYAGEKAQFGQPEXXXXXXXXXXXXQRLTRAVGKSLTMEMVLTGDRISA 839
GGCELAMMCDIIYAGEKAQFGQPE QRLTRAVGKSL MEMVLTGDRISA
Sbjct: 141 GGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISA 200
Query: 840 QEAKQAGLVSKIFPVETLVEEAIQCAEKIASYSKIVTAMAKESVNAAFETSLAEGLKLEK 1019
Q+AKQAGLVSKIFPVE LVEEAIQCAEKIAS SKIV AMAKESVNAAFE +L EG KLEK
Sbjct: 201 QDAKQAGLVSKIFPVEKLVEEAIQCAEKIASNSKIVVAMAKESVNAAFEMTLTEGNKLEK 260
Query: 1020 KLFYSTFATEDRKEGMTAFVEKRKANFKD 1106
+LFYSTFAT+DR+EGMTAFVEKRKANFKD
Sbjct: 261 RLFYSTFATDDRREGMTAFVEKRKANFKD 289
>ref|NP_057918.2| methylglutaconyl-CoA hydratase, mitochondrial precursor [Mus
musculus].
Length = 314
Score = 129 bits (323), Expect = 6e-30
Identities = 88/282 (31%), Positives = 135/282 (47%), Gaps = 11/282 (3%)
Frame = +3
Query: 297 GCPALRSLASSAHFEHIVVAKKGKSSNVGLIQL--NRPKALNALCKGLILELNQALQAFE 470
G R +S E + + + N G++ L NR NAL K L+ L++A+ A +
Sbjct: 35 GTAPRRGYSSEVKTEDELRVRHLEEENRGIVVLGINRAYGKNALSKNLLKMLSKAVDALK 94
Query: 471 EDPAVGAIVLTGGEKA-FAAGADIKEMQNQTFQDCYSGGFLSHW----DHLSRVRKPVIA 635
D V I++ F AGAD+KE + G F+S + ++ + P IA
Sbjct: 95 SDKKVRTIIIRSEVPGIFCAGADLKERAKMHSSEV--GPFVSKIRSVINDIANLPVPTIA 152
Query: 636 AVNGYALGGGCELAMMCDIIYAGEKAQFGQPEXXXXXXXXXXXXQRLTRAVGKSLTMEMV 815
A++G ALGGG ELA+ CDI A A+ G E QRL RA+G SL E++
Sbjct: 153 AIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELI 212
Query: 816 LTGDRISAQEAKQAGLVSKIFPV----ETLVEEAIQCAEKIASYSKIVTAMAKESVNAAF 983
+ + QEAK GL+S + + +A+ A + + +AK ++N
Sbjct: 213 FSARVLDGQEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMRVAKLAINQGM 272
Query: 984 ETSLAEGLKLEKKLFYSTFATEDRKEGMTAFVEKRKANFKDQ 1109
E L GL +E+ + T +T+DR EG+ AF EKR +K +
Sbjct: 273 EVDLVTGLAIEEACYAQTISTKDRLEGLLAFKEKRPPRYKGE 314
>ref|NP_081004.2| enoyl-CoA hydratase domain-containing protein 2, mitochondrial
precursor [Mus musculus].
Length = 296
Score = 127 bits (320), Expect = 1e-29
Identities = 83/260 (31%), Positives = 125/260 (48%), Gaps = 9/260 (3%)
Frame = +3
Query: 348 VVAKKGKSSNVGLIQLNRPKALNALCKGLILELNQALQAFEEDPAVGAIVLTGGEKA-FA 524
V A G + + I +NRP A NAL + EL +AL ED V ++ K F
Sbjct: 36 VQALTGPNQGITEILMNRPNARNALGNVFVSELLEALAQLREDQQVRVLLFRSAVKGVFC 95
Query: 525 AGADIKEMQNQTFQDCYSGGFLSH----WDHLSRVRKPVIAAVNGYALGGGCELAMMCDI 692
AGAD+KE + + D G F+ ++ P IAA++G+ALGGG ELA+ CD+
Sbjct: 96 AGADLKEREQMS--DVEVGTFVQRLRGLMSEIAAFPVPTIAAMDGFALGGGLELALACDL 153
Query: 693 IYAGEKAQFGQPEXXXXXXXXXXXXQRLTRAVGKSLTMEMVLTGDRISAQEAKQAGLVSK 872
A A G E QRL R +G +L E++ TG R++ +A++ GLV+
Sbjct: 154 RIAASSAVMGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLNGAQARELGLVNH 213
Query: 873 IFPV----ETLVEEAIQCAEKIASYSKIVTAMAKESVNAAFETSLAEGLKLEKKLFYSTF 1040
A+ A++I + I + K +++ E +A G+ +E+ +
Sbjct: 214 AVAQNEEGNAAYHRALALAQEILPQAPIAVRLGKVAIDRGMEVDIASGMAIEQMCYAQNI 273
Query: 1041 ATEDRKEGMTAFVEKRKANF 1100
T+DR EGM AF EKR F
Sbjct: 274 PTQDRLEGMAAFREKRAPKF 293
>ref|NP_077170.2| enoyl-CoA hydratase domain-containing protein 3, mitochondrial
precursor [Mus musculus].
Length = 300
Score = 119 bits (299), Expect = 4e-27
Identities = 74/238 (31%), Positives = 121/238 (50%), Gaps = 3/238 (1%)
Frame = +3
Query: 387 IQLNRPKALNALCKGLILELNQALQAFEEDPAVGAIVLTGGEKAFAAGADIKEMQNQTFQ 566
I L+ P+ NAL ++ L + E + I+++ F++G D+KE+ + +
Sbjct: 59 IVLSNPRRRNALSLAMLKSLRSDILHEAESEDLKVIIISAEGPVFSSGHDLKELTDAQGR 118
Query: 567 DCYSGGFLSHWDHLSRVRK---PVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEXX 737
D ++ F + + + +R P++A VNG A GC+L CDI A +K+ F P
Sbjct: 119 DYHAEVFQTCSEVMMLIRNHPVPILAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVN 178
Query: 738 XXXXXXXXXXQRLTRAVGKSLTMEMVLTGDRISAQEAKQAGLVSKIFPVETLVEEAIQCA 917
L RAV + + +EM+ TG+ ISAQEA + GL+SK+ P E L E ++ A
Sbjct: 179 VGLFCSTPAVA-LGRAVPRKVALEMLFTGEPISAQEALRHGLISKVVPEEQLEAETMRIA 237
Query: 918 EKIASYSKIVTAMAKESVNAAFETSLAEGLKLEKKLFYSTFATEDRKEGMTAFVEKRK 1091
+KI+S S+ V A+ K + L L + A +D +EG+ AF++KRK
Sbjct: 238 KKISSLSRSVVALGKATFYKQLPQDLRTAYFLASQAMVDNLALQDGQEGIEAFIQKRK 295
>ref|NP_058052.1| delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial precursor
[Mus musculus].
Length = 327
Score = 100 bits (250), Expect = 2e-21
Identities = 84/290 (28%), Positives = 136/290 (46%), Gaps = 29/290 (10%)
Frame = +3
Query: 306 ALRSLASSA--------------HFEHIVVAKKGKSSNVGLIQLNRPKALNALCKGLILE 443
+LRSL+SSA ++E I V K +V +QLNRP+ NA+ + E
Sbjct: 30 SLRSLSSSAQEASKRAPEEVSDHNYESIQVTSAQK--HVLHVQLNRPEKRNAMNRAFWRE 87
Query: 444 LNQALQAFEEDPAVGAIVLTGGEKAFAAGADIKEMQNQTFQDCYSGGFLSHW---DHLSR 614
L + Q +D A+V++G K F +G D+ +M ++ Q W D +S+
Sbjct: 88 LVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASELMQPSGDDAARIAWYLRDLISK 147
Query: 615 VR----------KPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEXXXXXXXXXXX 764
+ KPVIAA++G +GGG +L CDI Y + A F E
Sbjct: 148 YQKTFTVIEKCPKPVIAAIHGGCIGGGVDLVSACDIRYCTQDAFFQIKEVDMGLAADVGT 207
Query: 765 XQRLTRAVG-KSLTMEMVLTGDRISAQEAKQAGLVSKIF-PVETLVEEAIQCAEKIASYS 938
QRL + +G +SL E+ + ++ A EA +GLVS++F + ++ A A I+S S
Sbjct: 208 LQRLPKVIGNQSLVNELTFSARKMMADEALDSGLVSRVFQDKDAMLNAAFALAADISSKS 267
Query: 939 KIVTAMAKESVNAAFETSLAEGLKLEKKLFYSTFATEDRKEGMTAFVEKR 1088
+ +K ++ + + S+ E L S T+D + + A +EKR
Sbjct: 268 PVAVQGSKINLIYSRDHSVDESLDYMATWNMSMLQTQDIIKSVQAAMEKR 317
>ref|NP_076226.2| peroxisomal bifunctional enzyme [Mus musculus].
Length = 718
Score = 92.8 bits (229), Expect = 5e-19
Identities = 63/184 (34%), Positives = 95/184 (51%)
Frame = +3
Query: 375 NVGLIQLNRPKALNALCKGLILELNQALQAFEEDPAVGAIVLTGGEKAFAAGADIKEMQN 554
++ +I+L P +NA+ +I E+ LQ D V AIV+ G F AGADI ++
Sbjct: 10 SLAMIRLCNPP-VNAISPTVITEVRNGLQKASLDHTVRAIVICGANDNFCAGADIHGFKS 68
Query: 555 QTFQDCYSGGFLSHWDHLSRVRKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEX 734
T G + D + R +KPV+AA+ G ALGGG ELA+ C A KA+ G PE
Sbjct: 69 PT--GLTLGSLV---DEIQRYQKPVVAAIQGVALGGGLELALGCHYRIANAKARVGFPEV 123
Query: 735 XXXXXXXXXXXQRLTRAVGKSLTMEMVLTGDRISAQEAKQAGLVSKIFPVETLVEEAIQC 914
Q L R VG + ++++ +G IS EA + G++ + + VEEAI+
Sbjct: 124 MLGILPGARGTQLLPRVVGVPVALDLITSGRHISTDEALKLGILDVVVKSDP-VEEAIKF 182
Query: 915 AEKI 926
A+ +
Sbjct: 183 AQTV 186
>ref|NP_666220.1| 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial precursor [Mus
musculus].
Length = 385
Score = 84.0 bits (206), Expect = 2e-16
Identities = 76/278 (27%), Positives = 121/278 (43%), Gaps = 28/278 (10%)
Frame = +3
Query: 309 LRSLASSAHFEHIVVAKKGKSSNVGLIQLNRPKALNALCKGLILELNQALQAFEEDPAVG 488
L+ L S H E V + + G+I LNRPK LNAL +I ++ L+ +E+DP
Sbjct: 23 LQHLRMSMHTEAAEVLLERRGCG-GVITLNRPKFLNALSLNMIRQIYPQLKTWEQDPDTF 81
Query: 489 AIVLTG-GEKAFAAGADIKEM-------QNQTFQDCYSGGFLSHWDHLSRVRKPVIAAVN 644
I++ G G KAF AG DIK + QN T QD + ++ + + ++ +KP +A ++
Sbjct: 82 LIIIKGAGGKAFCAGGDIKALSEAKKARQNLT-QDLFREEYILN-NAIASCQKPYVALID 139
Query: 645 GYALGGGCELAMMCDIIYAGEKAQFGQPEXXXXXXXXXXXXQRLTRAVGKSLTMEMVLTG 824
G +GGG L++ A E++ F PE L R GK L + LTG
Sbjct: 140 GITMGGGVGLSVHGQFRVATERSLFAMPETGIGLFPDVGGGYFLPRLQGK-LGYFLALTG 198
Query: 825 DRISAQEAKQAGLVSKIFPVETL--------------------VEEAIQCAEKIASYSKI 944
R+ ++ +AG+ + E L V E+ K+ I
Sbjct: 199 YRLKGRDVHRAGIATHFVDSEKLRVLEEELLALKSPSAEDVAGVLESYHAKSKMDQDKSI 258
Query: 945 VTAMAKESVNAAFETSLAEGLKLEKKLFYSTFATEDRK 1058
+ + +N+ F + E + + S FA E K
Sbjct: 259 IFEEHMDKINSCFSANTVEQIIENLRQDGSPFAIEQMK 296
>ref|NP_083717.1| chromodomain Y-like protein 2 [Mus musculus].
Length = 503
Score = 79.0 bits (193), Expect = 7e-15
Identities = 63/239 (26%), Positives = 115/239 (48%), Gaps = 7/239 (2%)
Frame = +3
Query: 306 ALRSLASSAHFEHIVVAKKGKSSNVGLIQLNRPKALNALCKGLILELNQAL-QAFEEDP- 479
++R S+ F IVV K+ +++ L NAL ++ E+ +AL A +D
Sbjct: 236 SVRQNESNCRFRDIVVRKEEGFTHILLSSQTSDN--NALTPEIMKEVRRALCNAATDDSK 293
Query: 480 -----AVGAIVLTGGEKAFAAGADIKEMQNQTFQDCYSGGFLSHWDHLSRVRKPVIAAVN 644
AVG++ +G + ++ G + + ++ + + + +KP++ A+N
Sbjct: 294 LLLLSAVGSVFCSGLDYSYLIGRLSSDRRKESTR--IAEAIRDFVKAFIQFKKPIVVAIN 351
Query: 645 GYALGGGCELAMMCDIIYAGEKAQFGQPEXXXXXXXXXXXXQRLTRAVGKSLTMEMVLTG 824
G ALG G + +CDI++A EKA F P + +G +L EM+ G
Sbjct: 352 GPALGLGASILPLCDIVWASEKAWFQTPYATIRLTPAGCSSYTFPQILGVALANEMLFCG 411
Query: 825 DRISAQEAKQAGLVSKIFPVETLVEEAIQCAEKIASYSKIVTAMAKESVNAAFETSLAE 1001
+++AQEA GLVS++F T +E + +++AS S +V +K V + ++ L E
Sbjct: 412 RKLTAQEACSRGLVSQVFWPTTFSQEVMLRVKEMASCSAVVLEESKCLVRSFLKSVLEE 470
>ref|NP_849209.1| trifunctional enzyme subunit alpha, mitochondrial precursor [Mus
musculus].
Length = 763
Score = 76.6 bits (187), Expect = 4e-14
Identities = 65/227 (28%), Positives = 103/227 (45%), Gaps = 12/227 (5%)
Frame = +3
Query: 363 GKSSNVGLIQLNRPKA-LNALCKGLILELNQAL-QAFEEDPAVGAIVLTGGEKAFAAGAD 536
G +V +I++N P + +N L K + E + + + + D A++++ F AGAD
Sbjct: 44 GVKGDVAVIRINSPNSKVNTLNKEVQSEFIEVMNEIWANDQIRSAVLISSKPGCFVAGAD 103
Query: 537 IKEMQNQTFQD---CYSGGFLSHWDHLSRVRKPVIAAVNGYALGGGCELAMMCD--IIYA 701
I + + T S ++ L + KPV+AA++G LGGG ELA+ C I
Sbjct: 104 INMLSSCTTPQEATRISQEGQRMFEKLEKSPKPVVAAISGSCLGGGLELAIACQYRIATK 163
Query: 702 GEKAQFGQPEXXXXXXXXXXXXQRLTRAVGKSLTMEMVLTGDRISAQEAKQAGLVSKIFP 881
K G PE QRL + VG +M+LTG I A AK+ GLV ++
Sbjct: 164 DRKTVLGVPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRNIRADRAKKMGLVDQLVE 223
Query: 882 -----VETLVEEAIQCAEKIASYSKIVTAMAKESVNAAFETSLAEGL 1007
+++ E I+ E++A +A V+A L E L
Sbjct: 224 PLGPGIKSPEERTIEYLEEVA--VNFAKGLADRKVSAKQSKGLVEKL 268
>ref|NP_001116858.1| chromodomain Y-like protein isoform 2 [Mus musculus].
Length = 544
Score = 76.3 bits (186), Expect = 5e-14
Identities = 60/271 (22%), Positives = 125/271 (46%), Gaps = 6/271 (2%)
Frame = +3
Query: 306 ALRSLASSAHFEHIVVAKKGKSSNVGLIQLNRPKALNALCKGLILELNQALQAFEEDPAV 485
++R S+ + IVV K+ +++ L + N+L ++ E+ AL D +
Sbjct: 277 SVRQTESAYRYRDIVVRKQDGFTHILLS--TKSSENNSLNPEVMKEVQSALSTAAADDSK 334
Query: 486 GAIVLTGGEKAFAAGAD----IKEMQNQTFQDC--YSGGFLSHWDHLSRVRKPVIAAVNG 647
++L+ F G D I+ + + ++ + + + + +KP+I AVNG
Sbjct: 335 -LVLLSAVGSVFCCGLDFIYFIRRLTDDRKRESTKMADAIRNFVNTFIQFKKPIIVAVNG 393
Query: 648 YALGGGCELAMMCDIIYAGEKAQFGQPEXXXXXXXXXXXXQRLTRAVGKSLTMEMVLTGD 827
A+G G + +CD+++A EKA F P + +G + EM+ +G
Sbjct: 394 PAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLFSGR 453
Query: 828 RISAQEAKQAGLVSKIFPVETLVEEAIQCAEKIASYSKIVTAMAKESVNAAFETSLAEGL 1007
+++AQEA GLVS++F T +E + +++AS + +V +K V + L +
Sbjct: 454 KLTAQEACGKGLVSQVFWPGTFTQEVMVRIKELASCNPVVLEESKALVRCNMKMELEQAN 513
Query: 1008 KLEKKLFYSTFATEDRKEGMTAFVEKRKANF 1100
+ E ++ + + + M +++++ F
Sbjct: 514 ERECEVLKKIWGSAQGMDSMLKYLQRKIDEF 544
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,012,338
Number of extensions: 899594
Number of successful extensions: 3860
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 3830
Number of HSP's successfully gapped: 18
Length of query: 408
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 304
Effective length of database: 12,493,815
Effective search space: 3798119760
Effective search space used: 3798119760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012694
(1225 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004083.3| enoyl-CoA hydratase, mitochondrial precursor [H... 429 e-120
Alignment gi|NP_001689.1| methylglutaconyl-CoA hydratase, mitochondrial p... 126 4e-29
Alignment gi|NP_001185890.1| enoyl-CoA hydratase domain-containing protei... 122 5e-28
Alignment gi|NP_078969.2| enoyl-CoA hydratase domain-containing protein 3... 119 7e-27
Alignment gi|NP_001389.2| delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mi... 106 5e-23
Alignment gi|NP_001957.2| peroxisomal bifunctional enzyme isoform 1 [Homo... 99 6e-21
Alignment gi|NP_001003894.1| testis-specific chromodomain protein Y 1 iso... 86 9e-17
Alignment gi|NP_733841.1| testis-specific chromodomain protein Y 1 isofor... 86 9e-17
Alignment gi|NP_001001722.1| testis-specific chromodomain protein Y 2 [Ho... 84 3e-16
Alignment gi|NP_004816.1| testis-specific chromodomain protein Y 2 [Homo ... 84 3e-16
>ref|NP_004083.3| enoyl-CoA hydratase, mitochondrial precursor [Homo sapiens].
Length = 290
Score = 429 bits (1103), Expect = e-120
Identities = 220/270 (81%), Positives = 235/270 (87%)
Frame = +3
Query: 300 CPALRSLASSAHFEHIVVAKKGKSSNVGLIQLNRPKALNALCKGLILELNQALQAFEEDP 479
CPA R AS A+FE+I+ K+GK++ VGLIQLNRPKALNALC GLI ELNQAL+ FEEDP
Sbjct: 21 CPAWRPFASGANFEYIIAEKRGKNNTVGLIQLNRPKALNALCDGLIDELNQALKTFEEDP 80
Query: 480 AVGAIVLTGGEKAFAAGADIKEMQNQTFQDCYSGGFLSHWDHLSRVRKPVIAAVNGYALG 659
AVGAIVLTGG+KAFAAGADIKEMQN +FQDCYS FL HWDHL++V+KPVIAAVNGYA G
Sbjct: 81 AVGAIVLTGGDKAFAAGADIKEMQNLSFQDCYSSKFLKHWDHLTQVKKPVIAAVNGYAFG 140
Query: 660 GGCELAMMCDIIYAGEKAQFGQPEXXXXXXXXXXXXQRLTRAVGKSLTMEMVLTGDRISA 839
GGCELAMMCDIIYAGEKAQF QPE QRLTRAVGKSL MEMVLTGDRISA
Sbjct: 141 GGCELAMMCDIIYAGEKAQFAQPEILIGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISA 200
Query: 840 QEAKQAGLVSKIFPVETLVEEAIQCAEKIASYSKIVTAMAKESVNAAFETSLAEGLKLEK 1019
Q+AKQAGLVSKI PVETLVEEAIQCAEKIAS SKIV AMAKESVNAAFE +L EG KLEK
Sbjct: 201 QDAKQAGLVSKICPVETLVEEAIQCAEKIASNSKIVVAMAKESVNAAFEMTLTEGSKLEK 260
Query: 1020 KLFYSTFATEDRKEGMTAFVEKRKANFKDQ 1109
KLFYSTFAT+DRKEGMTAFVEKRKANFKDQ
Sbjct: 261 KLFYSTFATDDRKEGMTAFVEKRKANFKDQ 290
>ref|NP_001689.1| methylglutaconyl-CoA hydratase, mitochondrial precursor [Homo
sapiens].
Length = 339
Score = 126 bits (317), Expect = 4e-29
Identities = 86/277 (31%), Positives = 134/277 (48%), Gaps = 11/277 (3%)
Frame = +3
Query: 312 RSLASSAHFEHIVVAKKGKSSNVGLIQL--NRPKALNALCKGLILELNQALQAFEEDPAV 485
R +S E + + + N G++ L NR N+L K LI L++A+ A + D V
Sbjct: 65 RGYSSEMKTEDELRVRHLEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKV 124
Query: 486 GAIVLTGGEKA-FAAGADIKEMQNQTFQDCYSGGFLSHW----DHLSRVRKPVIAAVNGY 650
I++ F AGAD+KE + + G F+S + ++ + P IAA++G
Sbjct: 125 RTIIIRSEVPGIFCAGADLKERAKMSSSEV--GPFVSKIRAVINDIANLPVPTIAAIDGL 182
Query: 651 ALGGGCELAMMCDIIYAGEKAQFGQPEXXXXXXXXXXXXQRLTRAVGKSLTMEMVLTGDR 830
ALGGG ELA+ CDI A A+ G E QRL RA+G SL E++ +
Sbjct: 183 ALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARV 242
Query: 831 ISAQEAKQAGLVSKIFPV----ETLVEEAIQCAEKIASYSKIVTAMAKESVNAAFETSLA 998
+ +EAK GL+S + + +A+ A + + +AK ++N E L
Sbjct: 243 LDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMRVAKLAINQGMEVDLV 302
Query: 999 EGLKLEKKLFYSTFATEDRKEGMTAFVEKRKANFKDQ 1109
GL +E+ + T T+DR EG+ AF EKR +K +
Sbjct: 303 TGLAIEEACYAQTIPTKDRLEGLLAFKEKRPPRYKGE 339
>ref|NP_001185890.1| enoyl-CoA hydratase domain-containing protein 2, mitochondrial
isoform 1 [Homo sapiens].
Length = 292
Score = 122 bits (307), Expect = 5e-28
Identities = 84/260 (32%), Positives = 122/260 (46%), Gaps = 9/260 (3%)
Frame = +3
Query: 348 VVAKKGKSSNVGLIQLNRPKALNALCKGLILELNQALQAFEEDPAVGAIVLTGGEKA-FA 524
V A G + I +NRP A NAL + EL + L ED V ++ G K F
Sbjct: 32 VRALAGPDQGITEILMNRPSARNALGNVFVSELLETLAQLREDRQVRVLLFRSGVKGVFC 91
Query: 525 AGADIKEMQNQTFQDCYSGGFLSH----WDHLSRVRKPVIAAVNGYALGGGCELAMMCDI 692
AGAD+KE + + + G F+ + ++ P IAA++G+ALGGG ELA+ CD+
Sbjct: 92 AGADLKEREQMS--EAEVGVFVQRLRGLMNDIAAFPAPTIAAMDGFALGGGLELALACDL 149
Query: 693 IYAGEKAQFGQPEXXXXXXXXXXXXQRLTRAVGKSLTMEMVLTGDRISAQEAKQAGLVSK 872
A A G E QRL R +G +L E++ TG R+S EA GLV+
Sbjct: 150 RVAASSAVMGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGTEAHVLGLVNH 209
Query: 873 IFPV----ETLVEEAIQCAEKIASYSKIVTAMAKESVNAAFETSLAEGLKLEKKLFYSTF 1040
+ + A A++I + I + K +++ E +A G+ +E +
Sbjct: 210 AVAQNEEGDAAYQRARALAQEILPQAPIAVRLGKVAIDRGTEVDIASGMAIEGMCYAQNI 269
Query: 1041 ATEDRKEGMTAFVEKRKANF 1100
T DR EGM AF EKR F
Sbjct: 270 PTRDRLEGMAAFREKRTPKF 289
>ref|NP_078969.2| enoyl-CoA hydratase domain-containing protein 3, mitochondrial
precursor [Homo sapiens].
Length = 303
Score = 119 bits (297), Expect = 7e-27
Identities = 76/238 (31%), Positives = 117/238 (49%), Gaps = 3/238 (1%)
Frame = +3
Query: 387 IQLNRPKALNALCKGLILELNQALQAFEEDPAVGAIVLTGGEKAFAAGADIKEMQNQTFQ 566
I L+ PK N L ++ L + + + I+++ F++G D+KE+ + +
Sbjct: 59 IVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGHDLKELTEEQGR 118
Query: 567 DCYSGGFLSHWDHLSRVRK---PVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEXX 737
D ++ F + + +R PVIA VNG A GC+L CDI A +K+ F P
Sbjct: 119 DYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVN 178
Query: 738 XXXXXXXXXXQRLTRAVGKSLTMEMVLTGDRISAQEAKQAGLVSKIFPVETLVEEAIQCA 917
L RAV + + +EM+ TG+ ISAQEA GL+SK+ P L EE ++ A
Sbjct: 179 VGLFCSTPGVA-LARAVPRKVALEMLFTGEPISAQEALLHGLLSKVVPEAELQEETMRIA 237
Query: 918 EKIASYSKIVTAMAKESVNAAFETSLAEGLKLEKKLFYSTFATEDRKEGMTAFVEKRK 1091
KIAS S+ V ++ K + L L + A D +EG+TAF++KRK
Sbjct: 238 RKIASLSRPVVSLGKATFYKQLPQDLGTAYYLTSQAMVDNLALRDGQEGITAFLQKRK 295
>ref|NP_001389.2| delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial precursor
[Homo sapiens].
Length = 328
Score = 106 bits (264), Expect = 5e-23
Identities = 74/250 (29%), Positives = 118/250 (47%), Gaps = 15/250 (6%)
Frame = +3
Query: 387 IQLNRPKALNALCKGLILELNQALQAFEEDPAVGAIVLTGGEKAFAAGADIKEMQNQTFQ 566
+QLNRP NA+ K E+ + D A+V++G K F AG D+ +M + Q
Sbjct: 70 VQLNRPNKRNAMNKVFWREMVECFNKISRDADCRAVVISGAGKMFTAGIDLMDMASDILQ 129
Query: 567 ---------DCYSGGFLSHWDH----LSRVRKPVIAAVNGYALGGGCELAMMCDIIYAGE 707
Y ++ + + R KPVIAAV+G +GGG +L CDI Y +
Sbjct: 130 PKGDDVARISWYLRDIITRYQETFNVIERCPKPVIAAVHGGCIGGGVDLVTACDIRYCAQ 189
Query: 708 KAQFGQPEXXXXXXXXXXXXQRLTRAVG-KSLTMEMVLTGDRISAQEAKQAGLVSKIFP- 881
A F E QRL + +G +SL E+ T ++ A EA +GLVS++FP
Sbjct: 190 DAFFQVKEVDVGLAADVGTLQRLPKVIGNQSLVNELAFTARKMMADEALGSGLVSRVFPD 249
Query: 882 VETLVEEAIQCAEKIASYSKIVTAMAKESVNAAFETSLAEGLKLEKKLFYSTFATEDRKE 1061
E +++ A+ A +I+S S + K ++ + + S+AE L S T+D +
Sbjct: 250 KEVMLDAALALAAEISSKSPVAVQSTKVNLLYSRDHSVAESLNYVASWNMSMLQTQDLVK 309
Query: 1062 GMTAFVEKRK 1091
+ A E ++
Sbjct: 310 SVQATTENKE 319
>ref|NP_001957.2| peroxisomal bifunctional enzyme isoform 1 [Homo sapiens].
Length = 723
Score = 99.4 bits (246), Expect = 6e-21
Identities = 82/276 (29%), Positives = 128/276 (46%), Gaps = 36/276 (13%)
Frame = +3
Query: 378 VGLIQLNRPKALNALCKGLILELNQALQAFEEDPAVGAIVLTGGEKAFAAGADIKEMQN- 554
+ LI+L P +NA+ L+ ++ + LQ D + AIV+ G E F+AGADI+
Sbjct: 11 LALIRLRNPP-VNAISTTLLRDIKEGLQKAVIDHTIKAIVICGAEGKFSAGADIRGFSAP 69
Query: 555 QTFQDCYSGGFLSHW-DHLSRVRKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPE 731
+TF G L H D + R KPV+AA+ G A GGG ELA+ C A +AQ G PE
Sbjct: 70 RTF-----GLTLGHVVDEIQRNEKPVVAAIQGMAFGGGLELALGCHYRIAHAEAQVGLPE 124
Query: 732 XXXXXXXXXXXXQRLTRAVGKSLTMEMVLTGDRISAQEAKQAGLVSKIFPVETLVEEAIQ 911
Q L R G ++++ +G RI A EA + G++ K+ + VEEAI+
Sbjct: 125 VTLGLLPGARGTQLLPRLTGVPAALDLITSGRRILADEALKLGILDKVVNSDP-VEEAIR 183
Query: 912 CAEKIAS----------------------YSKIVTAMAKE------------SVNAAFET 989
A++++ +S+ + M ++ +V AA +
Sbjct: 184 FAQRVSDQPLESRRLCNKPIQSLPNMDSIFSEALLKMRRQHPGCLAQEACVRAVQAAVQY 243
Query: 990 SLAEGLKLEKKLFYSTFATEDRKEGMTAFVEKRKAN 1097
G+K E++LF + + AF +RKAN
Sbjct: 244 PYEVGIKKEEELFLYLLQSGQARALQYAFFAERKAN 279
>ref|NP_001003894.1| testis-specific chromodomain protein Y 1 isoform a [Homo sapiens].
Length = 540
Score = 85.5 bits (210), Expect = 9e-17
Identities = 67/270 (24%), Positives = 125/270 (46%), Gaps = 6/270 (2%)
Frame = +3
Query: 309 LRSLASSAHFEHIVVAKKGKSSNVGLIQLNRPKALNALCKGLILELNQALQAFEEDPAVG 488
+R S++ + IVV K+ + + L + K NAL +I E+ AL + D +
Sbjct: 274 IRLTESASTYRDIVVKKEDGFTQIVLSTRSTEK--NALNTEVIKEIVNALNSAAADDSK- 330
Query: 489 AIVLTGGEKAFAAGAD----IKEMQNQ--TFQDCYSGGFLSHWDHLSRVRKPVIAAVNGY 650
++ + F G D +K ++N T + + + +KP++ +VNG
Sbjct: 331 LVLFSAAGSVFCCGLDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGP 390
Query: 651 ALGGGCELAMMCDIIYAGEKAQFGQPEXXXXXXXXXXXXQRLTRAVGKSLTMEMVLTGDR 830
A+G G + +CD+++A EKA F P + +GK+ EM++ G +
Sbjct: 391 AIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRK 450
Query: 831 ISAQEAKQAGLVSKIFPVETLVEEAIQCAEKIASYSKIVTAMAKESVNAAFETSLAEGLK 1010
++A+EA GLVS++F T +E + +++ASY+ IV K V + L + +
Sbjct: 451 LTAREACAKGLVSQVFLTGTFTQEVMIQIKELASYNPIVLEECKALVRCNIKLELEQANE 510
Query: 1011 LEKKLFYSTFATEDRKEGMTAFVEKRKANF 1100
E ++ +++ E M +VE + F
Sbjct: 511 RECEVLRKIWSSAQGIESMLKYVENKIDEF 540
>ref|NP_733841.1| testis-specific chromodomain protein Y 1 isoform a [Homo sapiens].
Length = 540
Score = 85.5 bits (210), Expect = 9e-17
Identities = 67/270 (24%), Positives = 125/270 (46%), Gaps = 6/270 (2%)
Frame = +3
Query: 309 LRSLASSAHFEHIVVAKKGKSSNVGLIQLNRPKALNALCKGLILELNQALQAFEEDPAVG 488
+R S++ + IVV K+ + + L + K NAL +I E+ AL + D +
Sbjct: 274 IRLTESASTYRDIVVKKEDGFTQIVLSTRSTEK--NALNTEVIKEIVNALNSAAADDSK- 330
Query: 489 AIVLTGGEKAFAAGAD----IKEMQNQ--TFQDCYSGGFLSHWDHLSRVRKPVIAAVNGY 650
++ + F G D +K ++N T + + + +KP++ +VNG
Sbjct: 331 LVLFSAAGSVFCCGLDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGP 390
Query: 651 ALGGGCELAMMCDIIYAGEKAQFGQPEXXXXXXXXXXXXQRLTRAVGKSLTMEMVLTGDR 830
A+G G + +CD+++A EKA F P + +GK+ EM++ G +
Sbjct: 391 AIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRK 450
Query: 831 ISAQEAKQAGLVSKIFPVETLVEEAIQCAEKIASYSKIVTAMAKESVNAAFETSLAEGLK 1010
++A+EA GLVS++F T +E + +++ASY+ IV K V + L + +
Sbjct: 451 LTAREACAKGLVSQVFLTGTFTQEVMIQIKELASYNPIVLEECKALVRCNIKLELEQANE 510
Query: 1011 LEKKLFYSTFATEDRKEGMTAFVEKRKANF 1100
E ++ +++ E M +VE + F
Sbjct: 511 RECEVLRKIWSSAQGIESMLKYVENKIDEF 540
>ref|NP_001001722.1| testis-specific chromodomain protein Y 2 [Homo sapiens].
Length = 541
Score = 83.6 bits (205), Expect = 3e-16
Identities = 65/270 (24%), Positives = 120/270 (44%), Gaps = 6/270 (2%)
Frame = +3
Query: 309 LRSLASSAHFEHIVVAKKGKSSNVGLIQLNRPKALNALCKGLILELNQALQAFEEDPAVG 488
+R S+ + IVV K+ + + L + K NAL +I E+ AL + D +
Sbjct: 275 IRLTESAITYRDIVVKKEDGFTQIVLSTRSTEK--NALNTEVIKEMVNALNSAAADDSK- 331
Query: 489 AIVLTGGEKAFAAGADIKEMQNQTFQDCYSGGF------LSHWDHLSRVRKPVIAAVNGY 650
++ + F G D D + + + + +KP++ +VNG
Sbjct: 332 LVLFSAAGSVFCCGLDFGYFVRHLRNDRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGP 391
Query: 651 ALGGGCELAMMCDIIYAGEKAQFGQPEXXXXXXXXXXXXQRLTRAVGKSLTMEMVLTGDR 830
A+G G + +CD+++A EKA F P + +GK+ EM++ G +
Sbjct: 392 AIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRK 451
Query: 831 ISAQEAKQAGLVSKIFPVETLVEEAIQCAEKIASYSKIVTAMAKESVNAAFETSLAEGLK 1010
++A+EA GLVS++F T +E + +++ASY+ IV K V + L + +
Sbjct: 452 LTAREACAKGLVSQVFLTGTFTQEVMIQIKELASYNAIVLEECKALVRCNIKLELEQANE 511
Query: 1011 LEKKLFYSTFATEDRKEGMTAFVEKRKANF 1100
E ++ +++ E M +VE + F
Sbjct: 512 RECEVLRKIWSSAQGIESMLKYVENKIDEF 541
>ref|NP_004816.1| testis-specific chromodomain protein Y 2 [Homo sapiens].
Length = 541
Score = 83.6 bits (205), Expect = 3e-16
Identities = 65/270 (24%), Positives = 120/270 (44%), Gaps = 6/270 (2%)
Frame = +3
Query: 309 LRSLASSAHFEHIVVAKKGKSSNVGLIQLNRPKALNALCKGLILELNQALQAFEEDPAVG 488
+R S+ + IVV K+ + + L + K NAL +I E+ AL + D +
Sbjct: 275 IRLTESAITYRDIVVKKEDGFTQIVLSTRSTEK--NALNTEVIKEMVNALNSAAADDSK- 331
Query: 489 AIVLTGGEKAFAAGADIKEMQNQTFQDCYSGGF------LSHWDHLSRVRKPVIAAVNGY 650
++ + F G D D + + + + +KP++ +VNG
Sbjct: 332 LVLFSAAGSVFCCGLDFGYFVRHLRNDRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGP 391
Query: 651 ALGGGCELAMMCDIIYAGEKAQFGQPEXXXXXXXXXXXXQRLTRAVGKSLTMEMVLTGDR 830
A+G G + +CD+++A EKA F P + +GK+ EM++ G +
Sbjct: 392 AIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRK 451
Query: 831 ISAQEAKQAGLVSKIFPVETLVEEAIQCAEKIASYSKIVTAMAKESVNAAFETSLAEGLK 1010
++A+EA GLVS++F T +E + +++ASY+ IV K V + L + +
Sbjct: 452 LTAREACAKGLVSQVFLTGTFTQEVMIQIKELASYNAIVLEECKALVRCNIKLELEQANE 511
Query: 1011 LEKKLFYSTFATEDRKEGMTAFVEKRKANF 1100
E ++ +++ E M +VE + F
Sbjct: 512 RECEVLRKIWSSAQGIESMLKYVENKIDEF 541
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,275,802
Number of extensions: 1074658
Number of successful extensions: 4845
Number of sequences better than 1.0e-05: 29
Number of HSP's gapped: 4799
Number of HSP's successfully gapped: 29
Length of query: 408
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 303
Effective length of database: 14,835,944
Effective search space: 4495291032
Effective search space used: 4495291032
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012694
(1225 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 392 e-106
gb|JH118992.1| Sus scrofa unplaced genomic scaffold ChrUScaf4126 319 2e-84
>Sscrofa_Chr14
|| Length = 153851969
Score = 392 bits (198), Expect = e-106
Identities = 198/198 (100%)
Strand = Plus / Plus
Query: 328 gcgcacactttgagcacatcgtcgtcgcaaagaaggggaagagcagcaatgtggggctga 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153777926 gcgcacactttgagcacatcgtcgtcgcaaagaaggggaagagcagcaatgtggggctga 153777985
Query: 388 tccagctgaaccgccccaaagcactcaacgccctctgcaagggcctgatcttggagctca 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153777986 tccagctgaaccgccccaaagcactcaacgccctctgcaagggcctgatcttggagctca 153778045
Query: 448 accaggcactgcaggccttcgaggaggacccagccgtgggcgccatcgtcctcacaggcg 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153778046 accaggcactgcaggccttcgaggaggacccagccgtgggcgccatcgtcctcacaggcg 153778105
Query: 508 gggagaaggcctttgcag 525
||||||||||||||||||
Sbjct: 153778106 gggagaaggcctttgcag 153778123
Score = 319 bits (161), Expect = 2e-84
Identities = 161/161 (100%)
Strand = Plus / Plus
Query: 1047 gaagaccggaaggaaggcatgaccgcgttcgtggagaagaggaaggccaacttcaaagac 1106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153784337 gaagaccggaaggaaggcatgaccgcgttcgtggagaagaggaaggccaacttcaaagac 153784396
Query: 1107 cagtaggaactggctgcctctgccttcacacccccactcacaggaggagaatgtagcctg 1166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153784397 cagtaggaactggctgcctctgccttcacacccccactcacaggaggagaatgtagcctg 153784456
Query: 1167 taggtttcagaagcaaataaatccttctcttttaaacacgg 1207
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 153784457 taggtttcagaagcaaataaatccttctcttttaaacacgg 153784497
Score = 260 bits (131), Expect = 2e-66
Identities = 131/131 (100%)
Strand = Plus / Plus
Query: 523 cagctggagccgacatcaaggaaatgcagaaccagaccttccaggactgctactccggtg 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153778527 cagctggagccgacatcaaggaaatgcagaaccagaccttccaggactgctactccggtg 153778586
Query: 583 ggttcttgagccactgggaccacctctcccgggtcaggaagccggtcatagctgctgtca 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153778587 ggttcttgagccactgggaccacctctcccgggtcaggaagccggtcatagctgctgtca 153778646
Query: 643 atggctacgcc 653
|||||||||||
Sbjct: 153778647 atggctacgcc 153778657
Score = 230 bits (116), Expect = 1e-57
Identities = 123/124 (99%), Gaps = 1/124 (0%)
Strand = Plus / Plus
Query: 856 caggtcttgttagcaaaatttttcctgtcgagactctggtcgaagaagccatccagtgtg 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153780980 caggtcttgttagcaaaatttttcctgtcgagactctggtcgaagaagccatccagtgtg 153781039
Query: 916 cagaaaaaattgccagctactctaagattgtcacagcaatggccaagga-gtcagtgaac 974
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 153781040 cagaaaaaattgccagctactctaagattgtcacagcaatggccaaggacgtcagtgaac 153781099
Query: 975 gcag 978
||||
Sbjct: 153781100 gcag 153781103
Score = 218 bits (110), Expect = 5e-54
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 751 caggtacagggggcacccagcggctgacccgcgccgtgggaaagtcactgaccatggaga 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153780445 caggtacagggggcacccagcggctgacccgcgccgtgggaaagtcactgaccatggaga 153780504
Query: 811 tggtccttactggtgaccggatctcagcccaggaggcgaaacaagcaggt 860
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153780505 tggtccttactggtgaccggatctcagcccaggaggcgaaacaagcaggt 153780554
Score = 153 bits (77), Expect = 3e-34
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 654 cttgggggcggctgtgaactcgctatgatgtgtgacatcatttatgctggagagaaggcc 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153779472 cttgggggcggctgtgaactcgctatgatgtgtgacatcatttatgctggagagaaggcc 153779531
Query: 714 cagtttgggcagccgga 730
|||||||||||||||||
Sbjct: 153779532 cagtttgggcagccgga 153779548
Score = 143 bits (72), Expect = 3e-31
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 976 cagcttttgaaacgtcattagcagagggacttaagttagagaagaaactcttctattcaa 1035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153782760 cagcttttgaaacgtcattagcagagggacttaagttagagaagaaactcttctattcaa 153782819
Query: 1036 cgtttgccactg 1047
||||||||||||
Sbjct: 153782820 cgtttgccactg 153782831
Score = 89.7 bits (45), Expect = 3e-15
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 202 tggcttccggcagtggggcccctcgtcccgggagcgccatggcga 246
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153776363 tggcttccggcagtggggcccctcgtcccgggagcgccatggcga 153776407
>gb|JH118992.1| Sus scrofa unplaced genomic scaffold ChrUScaf4126
Length = 36609
Score = 319 bits (161), Expect = 2e-84
Identities = 161/161 (100%)
Strand = Plus / Plus
Query: 1047 gaagaccggaaggaaggcatgaccgcgttcgtggagaagaggaaggccaacttcaaagac 1106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21725 gaagaccggaaggaaggcatgaccgcgttcgtggagaagaggaaggccaacttcaaagac 21784
Query: 1107 cagtaggaactggctgcctctgccttcacacccccactcacaggaggagaatgtagcctg 1166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21785 cagtaggaactggctgcctctgccttcacacccccactcacaggaggagaatgtagcctg 21844
Query: 1167 taggtttcagaagcaaataaatccttctcttttaaacacgg 1207
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 21845 taggtttcagaagcaaataaatccttctcttttaaacacgg 21885
Score = 244 bits (123), Expect = 1e-61
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 856 caggtcttgttagcaaaatttttcctgtcgagactctggtcgaagaagccatccagtgtg 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18636 caggtcttgttagcaaaatttttcctgtcgagactctggtcgaagaagccatccagtgtg 18695
Query: 916 cagaaaaaattgccagctactctaagattgtcacagcaatggccaaggagtcagtgaacg 975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18696 cagaaaaaattgccagctactctaagattgtcacagcaatggccaaggagtcagtgaacg 18755
Query: 976 cag 978
|||
Sbjct: 18756 cag 18758
Score = 218 bits (110), Expect = 5e-54
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 751 caggtacagggggcacccagcggctgacccgcgccgtgggaaagtcactgaccatggaga 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18101 caggtacagggggcacccagcggctgacccgcgccgtgggaaagtcactgaccatggaga 18160
Query: 811 tggtccttactggtgaccggatctcagcccaggaggcgaaacaagcaggt 860
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18161 tggtccttactggtgaccggatctcagcccaggaggcgaaacaagcaggt 18210
Score = 145 bits (73), Expect = 7e-32
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 328 gcgcacactttgagcacatcgtcgtcgcaaagaaggggaagagcagcaatgtggggctga 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16553 gcgcacactttgagcacatcgtcgtcgcaaagaaggggaagagcagcaatgtggggctga 16612
Query: 388 tccagctgaaccg 400
|||||||||||||
Sbjct: 16613 tccagctgaaccg 16625
Score = 143 bits (72), Expect = 3e-31
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 976 cagcttttgaaacgtcattagcagagggacttaagttagagaagaaactcttctattcaa 1035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20088 cagcttttgaaacgtcattagcagagggacttaagttagagaagaaactcttctattcaa 20147
Query: 1036 cgtttgccactg 1047
||||||||||||
Sbjct: 20148 cgtttgccactg 20159
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,257,787
Number of extensions: 162
Number of successful extensions: 162
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 13
Length of query: 1225
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1204
Effective length of database: 2,808,413,156
Effective search space: 3381329439824
Effective search space used: 3381329439824
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)