Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012697
(1798 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_548138.2| PREDICTED: similar to 26S proteasome non-ATPase... 877 0.0
Alignment gi|XP_864801.1| PREDICTED: similar to COP9 constitutive photomo... 59 2e-08
Alignment gi|XP_864781.1| PREDICTED: similar to COP9 constitutive photomo... 59 2e-08
Alignment gi|XP_864763.1| PREDICTED: similar to COP9 constitutive photomo... 59 2e-08
Alignment gi|XP_864740.1| PREDICTED: similar to COP9 constitutive photomo... 59 2e-08
Alignment gi|XP_864722.1| PREDICTED: similar to COP9 constitutive photomo... 59 2e-08
Alignment gi|XP_536667.2| PREDICTED: similar to COP9 constitutive photomo... 59 2e-08
>ref|XP_548138.2| PREDICTED: similar to 26S proteasome non-ATPase regulatory subunit 3
(26S proteasome regulatory subunit S3) (Proteasome
subunit p58) [Canis familiaris].
Length = 534
Score = 877 bits (2265), Expect = 0.0
Identities = 459/534 (85%), Positives = 461/534 (86%)
Frame = +1
Query: 175 MKQEGSARRRGTDKAKXXXXXXXXXXXXXXXXXDVEMKXXXXXXXXXXXXXXXKXXXXXX 354
MKQEGSARRRG DKAK DVEMK K
Sbjct: 1 MKQEGSARRRGADKAKPPPGGGEQEPPPPPTPQDVEMKEEAAAGGGSAGEPDSKAAAAAA 60
Query: 355 EHSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLYKAVHGF 534
EHSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLYKAVHGF
Sbjct: 61 EHSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLYKAVHGF 120
Query: 535 FTSNSATRDFLLPFLEEPMDTEADLQFRPRTGKAASAPLLPEVEAYLQLLVVIFLMNSKR 714
FTSN+ATRDFLLPFLEEPMDTEADLQFRPRTGKAASAPLLPEVEAYLQLL+VIFLMNSKR
Sbjct: 121 FTSNNATRDFLLPFLEEPMDTEADLQFRPRTGKAASAPLLPEVEAYLQLLMVIFLMNSKR 180
Query: 715 YKEAQKISDDLMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHARLRTATL 894
YKEAQKISDDLMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHARLRTATL
Sbjct: 181 YKEAQKISDDLMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHARLRTATL 240
Query: 895 RHDADGQATXXXXXXXXXXXXXXXDQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQL 1074
RHDADGQAT DQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQL
Sbjct: 241 RHDADGQATLLNLLLRNYLHYSLYDQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQL 300
Query: 1075 EYSEARRTMTNALRKAPQHTAVGFKQTVHKXXXXXXXXXXXXPDRLQFRQPSLKRSLMPY 1254
EYSEARRTMTNALRKAPQHTAVGFKQTVHK PDRLQFRQPSLKRSLMPY
Sbjct: 301 EYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLKRSLMPY 360
Query: 1255 FLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISLA 1434
FLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISLA
Sbjct: 361 FLLTQAVRTGNLAKFNQVL
Animal-Genome cDNA 20110601C-012697
Animal-Genome cDNA 20110601C-012697
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012697
(1798 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039365.1| 26S proteasome non-ATPase regulatory subunit... 875 0.0
Alignment gi|NP_001092374.1| COP9 signalosome complex subunit 3 [Bos taur... 57 4e-08
>ref|NP_001039365.1| 26S proteasome non-ATPase regulatory subunit 3 [Bos taurus].
Length = 534
Score = 875 bits (2261), Expect = 0.0
Identities = 458/534 (85%), Positives = 460/534 (86%)
Frame = +1
Query: 175 MKQEGSARRRGTDKAKXXXXXXXXXXXXXXXXXDVEMKXXXXXXXXXXXXXXXKXXXXXX 354
MKQEGSARRRG DKAK DVEMK K
Sbjct: 1 MKQEGSARRRGADKAKPPPGGGEQEPPPPPAPQDVEMKEEAAAGGGSTGETAGKTAAAAA 60
Query: 355 EHSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLYKAVHGF 534
EHSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLYKAVHGF
Sbjct: 61 EHSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLYKAVHGF 120
Query: 535 FTSNSATRDFLLPFLEEPMDTEADLQFRPRTGKAASAPLLPEVEAYLQLLVVIFLMNSKR 714
FTSN+ATRDFLLPFLEEPMDTEADLQFRPRTGKAASAPLLPEVEAYLQLL+VIFLMNSKR
Sbjct: 121 FTSNNATRDFLLPFLEEPMDTEADLQFRPRTGKAASAPLLPEVEAYLQLLMVIFLMNSKR 180
Query: 715 YKEAQKISDDLMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHARLRTATL 894
YKEAQKISDDLMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHARLRTATL
Sbjct: 181 YKEAQKISDDLMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHARLRTATL 240
Query: 895 RHDADGQATXXXXXXXXXXXXXXXDQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQL 1074
RHD DGQAT DQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQL
Sbjct: 241 RHDTDGQATLLNLLLRNYLHYSLYDQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQL 300
Query: 1075 EYSEARRTMTNALRKAPQHTAVGFKQTVHKXXXXXXXXXXXXPDRLQFRQPSLKRSLMPY 1254
EYSEARRTMTNALRKAPQHTAVGFKQTVHK PDRLQFRQPSLKRSLMPY
Sbjct: 301 EYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLKRSLMPY 360
Query: 1255 FLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISLA 1434
FLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISLA
Sbjct: 361 FLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISLA 420
Query: 1435 DIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRI 1614
DIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRI
Sbjct: 421 DIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRI 480
Query: 1615 SFCLDIHNMSVKAMRFPPKSYNKDLESAXXXXXXXQQDLEFAKEMAEDDDDSFP 1776
SFCLDIHNMSVKAMRFPPKSYNKDLESA QQDLEFAKEMAEDDDDSFP
Sbjct: 481 SFCLDIHNMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDSFP 534
>ref|NP_001092374.1| COP9 signalosome complex subunit 3 [Bos taurus].
Length = 423
Score = 57.4 bits (137), Expect = 4e-08
Identities = 36/135 (26%), Positives = 67/135 (49%)
Frame = +1
Query: 1252 YFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISL 1431
Y L Q T N ++ ++ + E F D L+ + ++ K ++ ++ ++ +SL
Sbjct: 260 YHELAQVYSTNNPSELRSLVTKHSEIFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSL 319
Query: 1432 ADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQR 1611
D+A ++QL P++AE V I DG I ASIN + G V + + Y+ Q
Sbjct: 320 QDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSFHDNPEKYNNPAMLHNIDQE 379
Query: 1612 ISFCLDIHNMSVKAM 1656
+ C+++ + +KAM
Sbjct: 380 MLKCIEL-DERLKAM 393
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 65,462,132
Number of extensions: 1883761
Number of successful extensions: 9450
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 9398
Number of HSP's successfully gapped: 2
Length of query: 599
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 491
Effective length of database: 14,107,870
Effective search space: 6926964170
Effective search space used: 6926964170
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
DQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISLA 420
Query: 1435 DIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRI 1614
DIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRI
Sbjct: 421 DIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRI 480
Query: 1615 SFCLDIHNMSVKAMRFPPKSYNKDLESAXXXXXXXQQDLEFAKEMAEDDDDSFP 1776
SFCLDIHNMSVKAMRFPPKSYNKDLESA QQDLEFAKEMAEDDDDSFP
Sbjct: 481 SFCLDIHNMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDSFP 534
>ref|XP_864801.1| PREDICTED: similar to COP9 constitutive photomorphogenic homolog
subunit 3 isoform 6 [Canis familiaris].
Length = 403
Score = 58.9 bits (141), Expect = 2e-08
Identities = 36/135 (26%), Positives = 68/135 (50%)
Frame = +1
Query: 1252 YFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISL 1431
Y L Q T N ++ ++++ E F D L+ + ++ K ++ ++ ++ +SL
Sbjct: 240 YHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSL 299
Query: 1432 ADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQR 1611
D+A ++QL P++AE V I DG I ASIN + G V + + Y+ Q
Sbjct: 300 QDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSFHDNPEKYNNPAMLHNIDQE 359
Query: 1612 ISFCLDIHNMSVKAM 1656
+ C+++ + +KAM
Sbjct: 360 MLKCIEL-DERLKAM 373
>ref|XP_864781.1| PREDICTED: similar to COP9 constitutive photomorphogenic homolog
subunit 3 isoform 5 [Canis familiaris].
Length = 356
Score = 58.9 bits (141), Expect = 2e-08
Identities = 36/135 (26%), Positives = 68/135 (50%)
Frame = +1
Query: 1252 YFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISL 1431
Y L Q T N ++ ++++ E F D L+ + ++ K ++ ++ ++ +SL
Sbjct: 193 YHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSL 252
Query: 1432 ADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQR 1611
D+A ++QL P++AE V I DG I ASIN + G V + + Y+ Q
Sbjct: 253 QDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSFHDNPEKYNNPAMLHNIDQE 312
Query: 1612 ISFCLDIHNMSVKAM 1656
+ C+++ + +KAM
Sbjct: 313 MLKCIEL-DERLKAM 326
>ref|XP_864763.1| PREDICTED: similar to COP9 constitutive photomorphogenic homolog
subunit 3 isoform 4 [Canis familiaris].
Length = 318
Score = 58.9 bits (141), Expect = 2e-08
Identities = 36/135 (26%), Positives = 68/135 (50%)
Frame = +1
Query: 1252 YFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISL 1431
Y L Q T N ++ ++++ E F D L+ + ++ K ++ ++ ++ +SL
Sbjct: 155 YHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSL 214
Query: 1432 ADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQR 1611
D+A ++QL P++AE V I DG I ASIN + G V + + Y+ Q
Sbjct: 215 QDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSFHDNPEKYNNPAMLHNIDQE 274
Query: 1612 ISFCLDIHNMSVKAM 1656
+ C+++ + +KAM
Sbjct: 275 MLKCIEL-DERLKAM 288
>ref|XP_864740.1| PREDICTED: similar to COP9 constitutive photomorphogenic homolog
subunit 3 isoform 3 [Canis familiaris].
Length = 363
Score = 58.9 bits (141), Expect = 2e-08
Identities = 36/135 (26%), Positives = 68/135 (50%)
Frame = +1
Query: 1252 YFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISL 1431
Y L Q T N ++ ++++ E F D L+ + ++ K ++ ++ ++ +SL
Sbjct: 200 YHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSL 259
Query: 1432 ADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQR 1611
D+A ++QL P++AE V I DG I ASIN + G V + + Y+ Q
Sbjct: 260 QDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSFHDNPEKYNNPAMLHNIDQE 319
Query: 1612 ISFCLDIHNMSVKAM 1656
+ C+++ + +KAM
Sbjct: 320 MLKCIEL-DERLKAM 333
>ref|XP_864722.1| PREDICTED: similar to COP9 constitutive photomorphogenic homolog
subunit 3 isoform 2 [Canis familiaris].
Length = 210
Score = 58.9 bits (141), Expect = 2e-08
Identities = 36/135 (26%), Positives = 68/135 (50%)
Frame = +1
Query: 1252 YFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISL 1431
Y L Q T N ++ ++++ E F D L+ + ++ K ++ ++ ++ +SL
Sbjct: 47 YHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSL 106
Query: 1432 ADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQR 1611
D+A ++QL P++AE V I DG I ASIN + G V + + Y+ Q
Sbjct: 107 QDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSFHDNPEKYNNPAMLHNIDQE 166
Query: 1612 ISFCLDIHNMSVKAM 1656
+ C+++ + +KAM
Sbjct: 167 MLKCIEL-DERLKAM 180
>ref|XP_536667.2| PREDICTED: similar to COP9 constitutive photomorphogenic homolog
subunit 3 isoform 1 [Canis familiaris].
Length = 423
Score = 58.9 bits (141), Expect = 2e-08
Identities = 36/135 (26%), Positives = 68/135 (50%)
Frame = +1
Query: 1252 YFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISL 1431
Y L Q T N ++ ++++ E F D L+ + ++ K ++ ++ ++ +SL
Sbjct: 260 YHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSL 319
Query: 1432 ADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQR 1611
D+A ++QL P++AE V I DG I ASIN + G V + + Y+ Q
Sbjct: 320 QDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSFHDNPEKYNNPAMLHNIDQE 379
Query: 1612 ISFCLDIHNMSVKAM 1656
+ C+++ + +KAM
Sbjct: 380 MLKCIEL-DERLKAM 393
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 68,273,280
Number of extensions: 1938534
Number of successful extensions: 9876
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 9812
Number of HSP's successfully gapped: 7
Length of query: 599
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 490
Effective length of database: 15,240,880
Effective search space: 7468031200
Effective search space used: 7468031200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012697
(1798 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131544.1| PREDICTED: 26S proteasome non-ATPase regulat... 881 0.0
Alignment gi|XP_003131560.2| PREDICTED: 26S proteasome non-ATPase regulat... 708 0.0
Alignment gi|XP_003132091.1| PREDICTED: COP9 signalosome complex subunit ... 58 2e-08
>ref|XP_003131544.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 3-like [Sus
scrofa].
Length = 534
Score = 881 bits (2276), Expect = 0.0
Identities = 462/534 (86%), Positives = 462/534 (86%)
Frame = +1
Query: 175 MKQEGSARRRGTDKAKXXXXXXXXXXXXXXXXXDVEMKXXXXXXXXXXXXXXXKXXXXXX 354
MKQEGSARRRGTDKAK DVEMK K
Sbjct: 1 MKQEGSARRRGTDKAKPPPGGAEQEPPPPPAPQDVEMKEEAAAGGASTGETDGKAAAAAA 60
Query: 355 EHSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLYKAVHGF 534
EHSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLYKAVHGF
Sbjct: 61 EHSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLYKAVHGF 120
Query: 535 FTSNSATRDFLLPFLEEPMDTEADLQFRPRTGKAASAPLLPEVEAYLQLLVVIFLMNSKR 714
FTSNSATRDFLLPFLEEPMDTEADLQFRPRTGKAASAPLLPEVEAYLQLLVVIFLMNSKR
Sbjct: 121 FTSNSATRDFLLPFLEEPMDTEADLQFRPRTGKAASAPLLPEVEAYLQLLVVIFLMNSKR 180
Query: 715 YKEAQKISDDLMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHARLRTATL 894
YKEAQKISDDLMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHARLRTATL
Sbjct: 181 YKEAQKISDDLMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHARLRTATL 240
Query: 895 RHDADGQATXXXXXXXXXXXXXXXDQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQL 1074
RHDADGQAT DQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQL
Sbjct: 241 RHDADGQATLLNLLLRNYLHYNLYDQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQL 300
Query: 1075 EYSEARRTMTNALRKAPQHTAVGFKQTVHKXXXXXXXXXXXXPDRLQFRQPSLKRSLMPY 1254
EYSEARRTMTNALRKAPQHTAVGFKQTVHK PDRLQFRQPSLKRSLMPY
Sbjct: 301 EYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLKRSLMPY 360
Query: 1255 FLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISLA 1434
FLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISLA
Sbjct: 361 FLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISLA 420
Query: 1435 DIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRI 1614
DIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRI
Sbjct: 421 DIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRI 480
Query: 1615 SFCLDIHNMSVKAMRFPPKSYNKDLESAXXXXXXXQQDLEFAKEMAEDDDDSFP 1776
SFCLDIHNMSVKAMRFPPKSYNKDLESA QQDLEFAKEMAEDDDDSFP
Sbjct: 481 SFCLDIHNMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDSFP 534
>ref|XP_003131560.2| PREDICTED: 26S proteasome non-ATPase regulatory subunit 3-like,
partial [Sus scrofa].
Length = 578
Score = 708 bits (1827), Expect = 0.0
Identities = 393/521 (75%), Positives = 397/521 (76%), Gaps = 20/521 (3%)
Frame = +1
Query: 196 RRRGTDKAKXXXXXXXXXXXXXXXXXDVEMKXXXXXXXXXXXXXXXKXXXXXXEHSQREL 375
RRRGTDKAK DVEMK K +E
Sbjct: 1 RRRGTDKAKPPPGGAEQEPPPPPAPQDVEMKEECMIDLS-------KNQCSHVRRRVKEA 53
Query: 376 DTVTLED-IKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLYKAVHGFFTSNSA 552
TL IKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLYKAVHGFFTSNSA
Sbjct: 54 TVCTLPFYIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLYKAVHGFFTSNSA 113
Query: 553 TRDFLLPFLEEPMDTEADLQFRPRTGKAASAPLLPEVEAYLQLLVVIFLMNSKRYKEAQK 732
TRDFLLPFLEEPMDTEADLQFRPRTGKAASAPLLPEVEAYLQLLVVIFLMNSKRYKEAQK
Sbjct: 114 TRDFLLPFLEEPMDTEADLQFRPRTGKAASAPLLPEVEAYLQLLVVIFLMNSKRYKEAQK 173
Query: 733 ISDDLMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHARLRTATLRHDADG 912
ISDDLMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHARLRTATLRHDADG
Sbjct: 174 ISDDLMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHARLRTATLRHDADG 233
Query: 913 QATXXXXXXXXXXXXXXXDQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQLEYSEAR 1092
QAT DQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQLEYSEAR
Sbjct: 234 QATLLNLLLRNYLHYNLYDQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQLEYSEAR 293
Query: 1093 RTMTNALRKAPQHTAVGFKQTVHKXXXXXXXXXXXXPDRLQFRQPSLKRSLMPYFLLTQA 1272
RTMTNALRKAPQHTAVGFKQTVHK PD SLKRSLMPYFLLTQA
Sbjct: 294 RTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDXXXXXXXSLKRSLMPYFLLTQA 353
Query: 1273 VRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMIS------LSYSRISLA 1434
VRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMI L Y R
Sbjct: 354 VRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMIRTVVAPFLPYFRDGAG 413
Query: 1435 -------------DIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIY 1575
+ ++ Q S AIRDGVIEASINHEKGYVQSKEMIDIY
Sbjct: 414 RRYPGRGLGRQRHRLCRERQSCSGARKLPEGESAIRDGVIEASINHEKGYVQSKEMIDIY 473
Query: 1576 STREPQLAFHQRISFCLDIHNMSVKAMRFPPKSYNKDLESA 1698
STREPQLAFHQRISFCLDIHNMSVKAMRFPPKSYNKDLESA
Sbjct: 474 STREPQLAFHQRISFCLDIHNMSVKAMRFPPKSYNKDLESA 514
>ref|XP_003132091.1| PREDICTED: COP9 signalosome complex subunit 3-like [Sus scrofa].
Length = 423
Score = 57.8 bits (138), Expect = 2e-08
Identities = 35/135 (25%), Positives = 69/135 (51%)
Frame = +1
Query: 1252 YFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISL 1431
Y L Q T + ++ ++++ E F D L+ + ++ K ++ ++ ++ +SL
Sbjct: 260 YHELAQVYSTNSPSELRTLVNKHSETFVRDSNMGLVKQCLSSLYKKNIQRLTKTFLTLSL 319
Query: 1432 ADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQR 1611
D+A ++QL P++AE V I DG I ASIN + G V + + Y+ + Q
Sbjct: 320 QDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSFHDNPEKYNNPAMLQSIDQE 379
Query: 1612 ISFCLDIHNMSVKAM 1656
+ C+++ + +KAM
Sbjct: 380 MLKCIEL-DERLKAM 393
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 42,308,858
Number of extensions: 1219106
Number of successful extensions: 6279
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6229
Number of HSP's successfully gapped: 4
Length of query: 599
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 494
Effective length of database: 8,729,747
Effective search space: 4312495018
Effective search space used: 4312495018
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012697
(1798 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033465.1| 26S proteasome non-ATPase regulatory subunit 3 ... 865 0.0
Alignment gi|NP_036121.1| COP9 signalosome complex subunit 3 [Mus musculu... 59 2e-08
>ref|NP_033465.1| 26S proteasome non-ATPase regulatory subunit 3 [Mus musculus].
Length = 530
Score = 865 bits (2236), Expect = 0.0
Identities = 457/534 (85%), Positives = 460/534 (86%)
Frame = +1
Query: 175 MKQEGSARRRGTDKAKXXXXXXXXXXXXXXXXXDVEMKXXXXXXXXXXXXXXXKXXXXXX 354
MKQEGSARRRG DKAK DVEMK K
Sbjct: 1 MKQEGSARRRGADKAKPPPGGEQEPPPPAPQ--DVEMKEEAAAGSGSTGEGDGKAAAT-- 56
Query: 355 EHSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLYKAVHGF 534
EHSQRELDTVTLEDIKEHV+QLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLYKAVHGF
Sbjct: 57 EHSQRELDTVTLEDIKEHVRQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLYKAVHGF 116
Query: 535 FTSNSATRDFLLPFLEEPMDTEADLQFRPRTGKAASAPLLPEVEAYLQLLVVIFLMNSKR 714
FTSN+ATRDFLLPFLEEPMDTEADLQFRPRTGKAASAPLLPEVEAYLQLL+VIFLMNSKR
Sbjct: 117 FTSNNATRDFLLPFLEEPMDTEADLQFRPRTGKAASAPLLPEVEAYLQLLMVIFLMNSKR 176
Query: 715 YKEAQKISDDLMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHARLRTATL 894
YKEAQKISDDLMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHARLRTATL
Sbjct: 177 YKEAQKISDDLMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHARLRTATL 236
Query: 895 RHDADGQATXXXXXXXXXXXXXXXDQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQL 1074
RHDADGQAT DQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQL
Sbjct: 237 RHDADGQATLLNLLLRNYLHYSLYDQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQL 296
Query: 1075 EYSEARRTMTNALRKAPQHTAVGFKQTVHKXXXXXXXXXXXXPDRLQFRQPSLKRSLMPY 1254
EYSEARRTMTNALRKAPQHTAVGFKQTVHK PDRLQFRQPSLKRSLMPY
Sbjct: 297 EYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLKRSLMPY 356
Query: 1255 FLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISLA 1434
FLLTQAVRTGNLAKFNQVLDQFGEKFQ DGTYTLIIRLRHNVIKTGVRMISLSYSRISLA
Sbjct: 357 FLLTQAVRTGNLAKFNQVLDQFGEKFQTDGTYTLIIRLRHNVIKTGVRMISLSYSRISLA 416
Query: 1435 DIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRI 1614
DIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRI
Sbjct: 417 DIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRI 476
Query: 1615 SFCLDIHNMSVKAMRFPPKSYNKDLESAXXXXXXXQQDLEFAKEMAEDDDDSFP 1776
SFCLDIHNMSVKAMRFPPKSYNKDLESA QQDLEFAKEMAEDDDDSFP
Sbjct: 477 SFCLDIHNMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDSFP 530
>ref|NP_036121.1| COP9 signalosome complex subunit 3 [Mus musculus].
Length = 423
Score = 58.5 bits (140), Expect = 2e-08
Identities = 36/135 (26%), Positives = 67/135 (49%)
Frame = +1
Query: 1252 YFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISL 1431
Y L Q T N ++ ++ + E F D L+ + ++ K ++ ++ ++ +SL
Sbjct: 260 YHELAQVYSTNNPSELRNLVSKHSETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSL 319
Query: 1432 ADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQR 1611
D+A ++QL P++AE V I DG I ASIN + G V + + Y+ Q
Sbjct: 320 QDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSFHDNPEKYNNPAMLHNIDQE 379
Query: 1612 ISFCLDIHNMSVKAM 1656
+ C+++ + +KAM
Sbjct: 380 MLKCIEL-DERLKAM 393
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 56,165,072
Number of extensions: 1546764
Number of successful extensions: 7280
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7221
Number of HSP's successfully gapped: 2
Length of query: 599
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 492
Effective length of database: 12,403,707
Effective search space: 6102623844
Effective search space used: 6102623844
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012697
(1798 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002800.2| 26S proteasome non-ATPase regulatory subunit 3 ... 872 0.0
Alignment gi|NP_001186054.1| COP9 signalosome complex subunit 3 isoform 2... 59 1e-08
Alignment gi|NP_003644.2| COP9 signalosome complex subunit 3 isoform 1 [H... 59 1e-08
>ref|NP_002800.2| 26S proteasome non-ATPase regulatory subunit 3 [Homo sapiens].
Length = 534
Score = 872 bits (2254), Expect = 0.0
Identities = 457/534 (85%), Positives = 459/534 (85%)
Frame = +1
Query: 175 MKQEGSARRRGTDKAKXXXXXXXXXXXXXXXXXDVEMKXXXXXXXXXXXXXXXKXXXXXX 354
MKQEGSARRRG DKAK DVEMK K
Sbjct: 1 MKQEGSARRRGADKAKPPPGGGEQEPPPPPAPQDVEMKEEAATGGGSTGEADGKTAAAAA 60
Query: 355 EHSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLYKAVHGF 534
EHSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLYKAV GF
Sbjct: 61 EHSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLYKAVQGF 120
Query: 535 FTSNSATRDFLLPFLEEPMDTEADLQFRPRTGKAASAPLLPEVEAYLQLLVVIFLMNSKR 714
FTSN+ATRDFLLPFLEEPMDTEADLQFRPRTGKAAS PLLPEVEAYLQLLVVIF+MNSKR
Sbjct: 121 FTSNNATRDFLLPFLEEPMDTEADLQFRPRTGKAASTPLLPEVEAYLQLLVVIFMMNSKR 180
Query: 715 YKEAQKISDDLMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHARLRTATL 894
YKEAQKISDDLMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHARLRTATL
Sbjct: 181 YKEAQKISDDLMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHARLRTATL 240
Query: 895 RHDADGQATXXXXXXXXXXXXXXXDQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQL 1074
RHDADGQAT DQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQL
Sbjct: 241 RHDADGQATLLNLLLRNYLHYSLYDQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQL 300
Query: 1075 EYSEARRTMTNALRKAPQHTAVGFKQTVHKXXXXXXXXXXXXPDRLQFRQPSLKRSLMPY 1254
EYSEARRTMTNALRKAPQHTAVGFKQTVHK PDRLQFRQPSLKRSLMPY
Sbjct: 301 EYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLKRSLMPY 360
Query: 1255 FLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISLA 1434
FLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISLA
Sbjct: 361 FLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISLA 420
Query: 1435 DIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRI 1614
DIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRI
Sbjct: 421 DIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRI 480
Query: 1615 SFCLDIHNMSVKAMRFPPKSYNKDLESAXXXXXXXQQDLEFAKEMAEDDDDSFP 1776
SFCLDIHNMSVKAMRFPPKSYNKDLESA QQDLEFAKEMAEDDDDSFP
Sbjct: 481 SFCLDIHNMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDSFP 534
>ref|NP_001186054.1| COP9 signalosome complex subunit 3 isoform 2 [Homo sapiens].
Length = 403
Score = 58.9 bits (141), Expect = 1e-08
Identities = 36/135 (26%), Positives = 68/135 (50%)
Frame = +1
Query: 1252 YFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISL 1431
Y L Q T N ++ ++++ E F D L+ + ++ K ++ ++ ++ +SL
Sbjct: 240 YHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSL 299
Query: 1432 ADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQR 1611
D+A ++QL P++AE V I DG I ASIN + G V + + Y+ Q
Sbjct: 300 QDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSFHDNPEKYNNPAMLHNIDQE 359
Query: 1612 ISFCLDIHNMSVKAM 1656
+ C+++ + +KAM
Sbjct: 360 MLKCIEL-DERLKAM 373
>ref|NP_003644.2| COP9 signalosome complex subunit 3 isoform 1 [Homo sapiens].
Length = 423
Score = 58.9 bits (141), Expect = 1e-08
Identities = 36/135 (26%), Positives = 68/135 (50%)
Frame = +1
Query: 1252 YFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISL 1431
Y L Q T N ++ ++++ E F D L+ + ++ K ++ ++ ++ +SL
Sbjct: 260 YHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSL 319
Query: 1432 ADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQR 1611
D+A ++QL P++AE V I DG I ASIN + G V + + Y+ Q
Sbjct: 320 QDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSFHDNPEKYNNPAMLHNIDQE 379
Query: 1612 ISFCLDIHNMSVKAM 1656
+ C+++ + +KAM
Sbjct: 380 MLKCIEL-DERLKAM 393
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 66,752,471
Number of extensions: 1882338
Number of successful extensions: 8885
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 8810
Number of HSP's successfully gapped: 3
Length of query: 599
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 491
Effective length of database: 14,737,052
Effective search space: 7235892532
Effective search space used: 7235892532
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012697
(1798 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 773 0.0
gb|GL893298.2| Sus scrofa unplaced genomic scaffold ChrUScaf1183 385 e-104
>Sscrofa_Chr12
|| Length = 63588571
Score = 773 bits (390), Expect = 0.0
Identities = 390/390 (100%)
Strand = Plus / Minus
Query: 5 tttcccacaaggcccagcgccgggaaggggtttgcagctgctccgtcatcgtgcggcccg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22818543 tttcccacaaggcccagcgccgggaaggggtttgcagctgctccgtcatcgtgcggcccg 22818484
Query: 65 acgcgagcccgcgctcgtgtgcaggcccggctcggttcctggtctccggtgcgaggattc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22818483 acgcgagcccgcgctcgtgtgcaggcccggctcggttcctggtctccggtgcgaggattc 22818424
Query: 125 acccgaggccccggcctcggtccccggactaggccgcgaccccgggcgccatgaagcagg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22818423 acccgaggccccggcctcggtccccggactaggccgcgaccccgggcgccatgaagcagg 22818364
Query: 185 agggctcggcgcggcgccgtggcacggacaaggcaaagccaccgcccggcggagcggagc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22818363 agggctcggcgcggcgccgtggcacggacaaggcaaagccaccgcccggcggagcggagc 22818304
Query: 245 aggaaccaccgccgcccccagcccctcaagatgtggagatgaaagaagaggcagcggccg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22818303 aggaaccaccgccgcccccagcccctcaagatgtggagatgaaagaagaggcagcggccg 22818244
Query: 305 gtggcgcatcaaccggggagaccgatggcaaggcggcagcggcggcggctgagcactccc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22818243 gtggcgcatcaaccggggagaccgatggcaaggcggcagcggcggcggctgagcactccc 22818184
Query: 365 agcgagagctggacaccgtcaccttggagg 394
||||||||||||||||||||||||||||||
Sbjct: 22818183 agcgagagctggacaccgtcaccttggagg 22818154
Score = 385 bits (194), Expect = e-104
Identities = 194/194 (100%)
Strand = Plus / Plus
Query: 859 agcttcttgcatgcacggctccggacagccaccctgcggcacgacgcggatgggcaggcc 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22745672 agcttcttgcatgcacggctccggacagccaccctgcggcacgacgcggatgggcaggcc 22745731
Query: 919 acgttgctgaacctcctgctgcggaactacttgcactacaacttgtacgaccaggccgag 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22745732 acgttgctgaacctcctgctgcggaactacttgcactacaacttgtacgaccaggccgag 22745791
Query: 979 aagctggtgtccaagtccgtgttccccgagcaggccaacaacaacgagtgggcaaggtac 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22745792 aagctggtgtccaagtccgtgttccccgagcaggccaacaacaacgagtgggcaaggtac 22745851
Query: 1039 ctctactacacagg 1052
||||||||||||||
Sbjct: 22745852 ctctactacacagg 22745865
Score = 385 bits (194), Expect = e-104
Identities = 194/194 (100%)
Strand = Plus / Minus
Query: 859 agcttcttgcatgcacggctccggacagccaccctgcggcacgacgcggatgggcaggcc 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22809463 agcttcttgcatgcacggctccggacagccaccctgcggcacgacgcggatgggcaggcc 22809404
Query: 919 acgttgctgaacctcctgctgcggaactacttgcactacaacttgtacgaccaggccgag 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22809403 acgttgctgaacctcctgctgcggaactacttgcactacaacttgtacgaccaggccgag 22809344
Query: 979 aagctggtgtccaagtccgtgttccccgagcaggccaacaacaacgagtgggcaaggtac 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22809343 aagctggtgtccaagtccgtgttccccgagcaggccaacaacaacgagtgggcaaggtac 22809284
Query: 1039 ctctactacacagg 1052
||||||||||||||
Sbjct: 22809283 ctctactacacagg 22809270
Score = 381 bits (192), Expect = e-103
Identities = 192/192 (100%)
Strand = Plus / Minus
Query: 394 gacatcaaggagcacgtgaaacagctggagaaggcagtgtcgggcaaggagcctcggttc 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22814150 gacatcaaggagcacgtgaaacagctggagaaggcagtgtcgggcaaggagcctcggttc 22814091
Query: 454 gtgctgcgggccctgcggatgctgccttccacgtctcgccgcctcaaccactatgttctg 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22814090 gtgctgcgggccctgcggatgctgccttccacgtctcgccgcctcaaccactatgttctg 22814031
Query: 514 tacaaggccgtgcatggcttcttcacctcaaacagtgccactcgggacttcttgctcccc 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22814030 tacaaggccgtgcatggcttcttcacctcaaacagtgccactcgggacttcttgctcccc 22813971
Query: 574 ttcctggaagag 585
||||||||||||
Sbjct: 22813970 ttcctggaagag 22813959
Score = 315 bits (159), Expect = 5e-83
Identities = 159/159 (100%)
Strand = Plus / Minus
Query: 1493 aggccatccgcgatggcgtcattgaggccagcatcaaccatgagaaggggtacgtccagt 1552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22804521 aggccatccgcgatggcgtcattgaggccagcatcaaccatgagaaggggtacgtccagt 22804462
Query: 1553 ccaaggagatgattgacatctattccacccgagagccccagctggccttccaccagcgca 1612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22804461 ccaaggagatgattgacatctattccacccgagagccccagctggccttccaccagcgca 22804402
Query: 1613 tctccttctgcctggacattcacaacatgtctgtcaagg 1651
|||||||||||||||||||||||||||||||||||||||
Sbjct: 22804401 tctccttctgcctggacattcacaacatgtctgtcaagg 22804363
Score = 280 bits (141), Expect = 3e-72
Identities = 141/141 (100%)
Strand = Plus / Minus
Query: 584 agcccatggacacagaagccgatttacagttccggccccgaacaggaaaagctgcgtcag 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22812286 agcccatggacacagaagccgatttacagttccggccccgaacaggaaaagctgcgtcag 22812227
Query: 644 ctcccctcctgcctgaagtggaagcctatctccagctcctcgtggtcatcttcctgatga 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22812226 ctcccctcctgcctgaagtggaagcctatctccagctcctcgtggtcatcttcctgatga 22812167
Query: 704 acagcaagcgctacaaagagg 724
|||||||||||||||||||||
Sbjct: 22812166 acagcaagcgctacaaagagg 22812146
Score = 276 bits (139), Expect = 4e-71
Identities = 139/139 (100%)
Strand = Plus / Plus
Query: 722 aggcacagaagatctcggatgacctgatgcagaagatcagcactcagaaccgccgggcac 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22744446 aggcacagaagatctcggatgacctgatgcagaagatcagcactcagaaccgccgggcac 22744505
Query: 782 tggacctcgtggctgcgaagtgttactattatcacgcccgggtctatgagttcctggaca 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22744506 tggacctcgtggctgcgaagtgttactattatcacgcccgggtctatgagttcctggaca 22744565
Query: 842 agctggatgtggtgcgcag 860
|||||||||||||||||||
Sbjct: 22744566 agctggatgtggtgcgcag 22744584
Score = 276 bits (139), Expect = 4e-71
Identities = 139/139 (100%)
Strand = Plus / Minus
Query: 722 aggcacagaagatctcggatgacctgatgcagaagatcagcactcagaaccgccgggcac 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22810689 aggcacagaagatctcggatgacctgatgcagaagatcagcactcagaaccgccgggcac 22810630
Query: 782 tggacctcgtggctgcgaagtgttactattatcacgcccgggtctatgagttcctggaca 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22810629 tggacctcgtggctgcgaagtgttactattatcacgcccgggtctatgagttcctggaca 22810570
Query: 842 agctggatgtggtgcgcag 860
|||||||||||||||||||
Sbjct: 22810569 agctggatgtggtgcgcag 22810551
Score = 246 bits (124), Expect = 4e-62
Identities = 124/124 (100%)
Strand = Plus / Minus
Query: 1270 gctgtccggacgggaaacctggccaagttcaaccaggtcctggatcagtttggggagaag 1329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22805100 gctgtccggacgggaaacctggccaagttcaaccaggtcctggatcagtttggggagaag 22805041
Query: 1330 tttcaagcagatgggacctacaccctcatcatccgactgcggcacaacgtcatcaagaca 1389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22805040 tttcaagcagatgggacctacaccctcatcatccgactgcggcacaacgtcatcaagaca 22804981
Query: 1390 ggtg 1393
||||
Sbjct: 22804980 ggtg 22804977
Score = 230 bits (116), Expect = 2e-57
Identities = 116/116 (100%)
Strand = Plus / Minus
Query: 1155 ggtgcacaagctgctgattgtggtggagctgttgctgggggagatcccggaccggctgca 1214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22805316 ggtgcacaagctgctgattgtggtggagctgttgctgggggagatcccggaccggctgca 22805257
Query: 1215 gttccgacaaccatccctcaagcgctcgctcatgccctacttcctcctgacccagg 1270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22805256 gttccgacaaccatccctcaagcgctcgctcatgccctacttcctcctgacccagg 22805201
Score = 218 bits (110), Expect = 8e-54
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 1049 cagggcggatcaaagccatccagctggagtactcggaggcccggagaacaatgaccaacg 1108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22746031 cagggcggatcaaagccatccagctggagtactcggaggcccggagaacaatgaccaacg 22746090
Query: 1109 cccttcgcaaggcccctcagcacacagctgtcggcttcaaacagacggtg 1158
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22746091 cccttcgcaaggcccctcagcacacagctgtcggcttcaaacagacggtg 22746140
Score = 218 bits (110), Expect = 8e-54
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 1049 cagggcggatcaaagccatccagctggagtactcggaggcccggagaacaatgaccaacg 1108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22809104 cagggcggatcaaagccatccagctggagtactcggaggcccggagaacaatgaccaacg 22809045
Query: 1109 cccttcgcaaggcccctcagcacacagctgtcggcttcaaacagacggtg 1158
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22809044 cccttcgcaaggcccctcagcacacagctgtcggcttcaaacagacggtg 22808995
Score = 214 bits (108), Expect = 1e-52
Identities = 108/108 (100%)
Strand = Plus / Minus
Query: 1388 caggtgtgcgcatgatcagcctctcctattcccgaatctccctggcggacatcgcccaga 1447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22804840 caggtgtgcgcatgatcagcctctcctattcccgaatctccctggcggacatcgcccaga 22804781
Query: 1448 agctgcagctggatagcccagaggatgccgagttcattgttgccaagg 1495
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22804780 agctgcagctggatagcccagaggatgccgagttcattgttgccaagg 22804733
Score = 196 bits (99), Expect = 3e-47
Identities = 99/99 (100%)
Strand = Plus / Minus
Query: 1700 aggaacggcgggagcgggagcagcaagacttggagtttgccaaggagatggcagaggacg 1759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22803225 aggaacggcgggagcgggagcagcaagacttggagtttgccaaggagatggcagaggacg 22803166
Query: 1760 acgacgacagcttcccttgagctggggggctggggaggg 1798
|||||||||||||||||||||||||||||||||||||||
Sbjct: 22803165 acgacgacagcttcccttgagctggggggctggggaggg 22803127
Score = 107 bits (54), Expect = 2e-20
Identities = 54/54 (100%)
Strand = Plus / Minus
Query: 1649 aggccatgaggtttcctcccaaatcgtacaacaaggacctggagtccgcagagg 1702
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22803477 aggccatgaggtttcctcccaaatcgtacaacaaggacctggagtccgcagagg 22803424
>gb|GL893298.2| Sus scrofa unplaced genomic scaffold ChrUScaf1183
Length = 88797
Score = 385 bits (194), Expect = e-104
Identities = 194/194 (100%)
Strand = Plus / Plus
Query: 859 agcttcttgcatgcacggctccggacagccaccctgcggcacgacgcggatgggcaggcc 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68657 agcttcttgcatgcacggctccggacagccaccctgcggcacgacgcggatgggcaggcc 68716
Query: 919 acgttgctgaacctcctgctgcggaactacttgcactacaacttgtacgaccaggccgag 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68717 acgttgctgaacctcctgctgcggaactacttgcactacaacttgtacgaccaggccgag 68776
Query: 979 aagctggtgtccaagtccgtgttccccgagcaggccaacaacaacgagtgggcaaggtac 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68777 aagctggtgtccaagtccgtgttccccgagcaggccaacaacaacgagtgggcaaggtac 68836
Query: 1039 ctctactacacagg 1052
||||||||||||||
Sbjct: 68837 ctctactacacagg 68850
Score = 381 bits (192), Expect = e-103
Identities = 192/192 (100%)
Strand = Plus / Plus
Query: 394 gacatcaaggagcacgtgaaacagctggagaaggcagtgtcgggcaaggagcctcggttc 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63970 gacatcaaggagcacgtgaaacagctggagaaggcagtgtcgggcaaggagcctcggttc 64029
Query: 454 gtgctgcgggccctgcggatgctgccttccacgtctcgccgcctcaaccactatgttctg 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64030 gtgctgcgggccctgcggatgctgccttccacgtctcgccgcctcaaccactatgttctg 64089
Query: 514 tacaaggccgtgcatggcttcttcacctcaaacagtgccactcgggacttcttgctcccc 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64090 tacaaggccgtgcatggcttcttcacctcaaacagtgccactcgggacttcttgctcccc 64149
Query: 574 ttcctggaagag 585
||||||||||||
Sbjct: 64150 ttcctggaagag 64161
Score = 315 bits (159), Expect = 5e-83
Identities = 159/159 (100%)
Strand = Plus / Plus
Query: 1493 aggccatccgcgatggcgtcattgaggccagcatcaaccatgagaaggggtacgtccagt 1552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73940 aggccatccgcgatggcgtcattgaggccagcatcaaccatgagaaggggtacgtccagt 73999
Query: 1553 ccaaggagatgattgacatctattccacccgagagccccagctggccttccaccagcgca 1612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74000 ccaaggagatgattgacatctattccacccgagagccccagctggccttccaccagcgca 74059
Query: 1613 tctccttctgcctggacattcacaacatgtctgtcaagg 1651
|||||||||||||||||||||||||||||||||||||||
Sbjct: 74060 tctccttctgcctggacattcacaacatgtctgtcaagg 74098
Score = 280 bits (141), Expect = 3e-72
Identities = 141/141 (100%)
Strand = Plus / Plus
Query: 584 agcccatggacacagaagccgatttacagttccggccccgaacaggaaaagctgcgtcag 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65834 agcccatggacacagaagccgatttacagttccggccccgaacaggaaaagctgcgtcag 65893
Query: 644 ctcccctcctgcctgaagtggaagcctatctccagctcctcgtggtcatcttcctgatga 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65894 ctcccctcctgcctgaagtggaagcctatctccagctcctcgtggtcatcttcctgatga 65953
Query: 704 acagcaagcgctacaaagagg 724
|||||||||||||||||||||
Sbjct: 65954 acagcaagcgctacaaagagg 65974
Score = 276 bits (139), Expect = 4e-71
Identities = 139/139 (100%)
Strand = Plus / Plus
Query: 722 aggcacagaagatctcggatgacctgatgcagaagatcagcactcagaaccgccgggcac 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67431 aggcacagaagatctcggatgacctgatgcagaagatcagcactcagaaccgccgggcac 67490
Query: 782 tggacctcgtggctgcgaagtgttactattatcacgcccgggtctatgagttcctggaca 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67491 tggacctcgtggctgcgaagtgttactattatcacgcccgggtctatgagttcctggaca 67550
Query: 842 agctggatgtggtgcgcag 860
|||||||||||||||||||
Sbjct: 67551 agctggatgtggtgcgcag 67569
Score = 246 bits (124), Expect = 4e-62
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 1270 gctgtccggacgggaaacctggccaagttcaaccaggtcctggatcagtttggggagaag 1329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73356 gctgtccggacgggaaacctggccaagttcaaccaggtcctggatcagtttggggagaag 73415
Query: 1330 tttcaagcagatgggacctacaccctcatcatccgactgcggcacaacgtcatcaagaca 1389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73416 tttcaagcagatgggacctacaccctcatcatccgactgcggcacaacgtcatcaagaca 73475
Query: 1390 ggtg 1393
||||
Sbjct: 73476 ggtg 73479
Score = 218 bits (110), Expect = 8e-54
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 1049 cagggcggatcaaagccatccagctggagtactcggaggcccggagaacaatgaccaacg 1108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69096 cagggcggatcaaagccatccagctggagtactcggaggcccggagaacaatgaccaacg 69155
Query: 1109 cccttcgcaaggcccctcagcacacagctgtcggcttcaaacagacggtg 1158
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69156 cccttcgcaaggcccctcagcacacagctgtcggcttcaaacagacggtg 69205
Score = 210 bits (106), Expect = 2e-51
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 195 gcggcgccgtggcacggacaaggcaaagccaccgcccggcggagcggagcaggaaccacc 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60265 gcggcgccgtggcacggacaaggcaaagccaccgcccggcggagcggagcaggaaccacc 60324
Query: 255 gccgcccccagcccctcaagatgtggagatgaaagaagaggcagcg 300
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60325 gccgcccccagcccctcaagatgtggagatgaaagaagaggcagcg 60370
Score = 123 bits (62), Expect = 4e-25
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 5 tttcccacaaggcccagcgccgggaaggggtttgcagctgctccgtcatcgtgcggcccg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60103 tttcccacaaggcccagcgccgggaaggggtttgcagctgctccgtcatcgtgcggcccg 60162
Query: 65 ac 66
||
Sbjct: 60163 ac 60164
Score = 107 bits (54), Expect = 2e-20
Identities = 54/54 (100%)
Strand = Plus / Plus
Query: 1649 aggccatgaggtttcctcccaaatcgtacaacaaggacctggagtccgcagagg 1702
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75128 aggccatgaggtttcctcccaaatcgtacaacaaggacctggagtccgcagagg 75181
Score = 103 bits (52), Expect = 3e-19
Identities = 52/52 (100%)
Strand = Plus / Plus
Query: 1155 ggtgcacaagctgctgattgtggtggagctgttgctgggggagatcccggac 1206
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73060 ggtgcacaagctgctgattgtggtggagctgttgctgggggagatcccggac 73111
Score = 87.7 bits (44), Expect = 2e-14
Identities = 44/44 (100%)
Strand = Plus / Plus
Query: 1227 atccctcaagcgctcgctcatgccctacttcctcctgacccagg 1270
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73212 atccctcaagcgctcgctcatgccctacttcctcctgacccagg 73255
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 41,407,044
Number of extensions: 423
Number of successful extensions: 423
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 423
Number of HSP's successfully gapped: 27
Length of query: 1798
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1776
Effective length of database: 2,808,408,574
Effective search space: 4987733627424
Effective search space used: 4987733627424
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)