Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012698
(1039 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030273.1| glutaredoxin-3 [Bos taurus]. 584 e-169
Alignment gi|NP_001093773.1| glutaredoxin-related protein 5, mitochondria... 93 3e-19
Alignment gi|NP_001071354.1| thioredoxin-like protein 1 [Bos taurus]. 55 8e-08
Alignment gi|NP_776393.1| thioredoxin [Bos taurus]. 54 2e-07
>ref|NP_001030273.1| glutaredoxin-3 [Bos taurus].
Length = 334
Score = 584 bits (1505), Expect(2) = e-169
Identities = 292/311 (93%), Positives = 296/311 (95%)
Frame = +2
Query: 68 VVEVGSAGQFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEA 247
VVEVGS+GQFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEH QVSFVKLEAEA
Sbjct: 12 VVEVGSSGQFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHQQVSFVKLEAEA 71
Query: 248 VPEVSEKYGISSVPTFLFFKNSQSIDRLDGAHAPELTKKVQRHAXXXXXXXXXXEHLKED 427
VPEVSEKY ISSVPTFLFFKNSQ IDRLDGAHAPELTKKVQRHA EH KED
Sbjct: 72 VPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASSGSFSPSGSEHPKED 131
Query: 428 LSLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILNKHNIQFSSFDIFSDEEVRQGLK 607
LSLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILNKHNIQFSSFDIFSDEEVRQGLK
Sbjct: 132 LSLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILNKHNIQFSSFDIFSDEEVRQGLK 191
Query: 608 TYSNWPTYPQLYVSGELIGGLDIIKELEASKELDTICPKAPKLEERLKVLTNKASVMLFM 787
TYS+WPTYPQLYVSGELIGGLDIIKELEASKELDTICPKAPKLEERLKVLTNKASVMLFM
Sbjct: 192 TYSSWPTYPQLYVSGELIGGLDIIKELEASKELDTICPKAPKLEERLKVLTNKASVMLFM 251
Query: 788 KGNKQEAKCGFSRQILEILNSTGVDYETFDILEDEEVRQGLKTYSNWPTYPQLYVKGELV 967
KGNKQEAKCGFSRQILEILNSTG++YETFDILEDEEVRQGLK YSNWPTYPQLYVKGELV
Sbjct: 252 KGNKQEAKCGFSRQILEILNSTGIEYETFDILEDEEVRQGLKAYSNWPTYPQLYVKGELV 311
Query: 968 GGLDIVKELKE 1000
GGLDIVKELKE
Sbjct: 312 GGLDIVKELKE 322
Score = 31.2 bits (69), Expect(2) = e-169
Identities = 13/19 (68%), Positives = 17/19 (89%)
Frame = +3
Query: 981 LLRN*KKNGELLPILKGEN 1037
+++ K+NGELLPILKGEN
Sbjct: 316 IVKELKENGELLPILKGEN 334
Score = 132 bits (331), Expect = 7e-31
Identities = 82/187 (43%), Positives = 107/187 (57%), Gaps = 2/187 (1%)
Frame = +2
Query: 152 PWAPQCAQMNDVMAELAKEHPQVS-FVKLEAEAVPEVSEKYGISSVPTF-LFFKNSQSID 325
P P+C ++ L K + Q S F E V + + Y SS PT+ + + + I
Sbjct: 153 PQEPRCGFSKQMVEILNKHNIQFSSFDIFSDEEVRQGLKTY--SSWPTYPQLYVSGELIG 210
Query: 326 RLDGAHAPELTKKVQRHAXXXXXXXXXXEHLKEDLSLRLKKLTHAAPCMLFMKGTPQEPR 505
LD E +K++ L RLK LT+ A MLFMKG QE +
Sbjct: 211 GLDIIKELEASKELDTICPKAPK-----------LEERLKVLTNKASVMLFMKGNKQEAK 259
Query: 506 CGFSKQMVEILNKHNIQFSSFDIFSDEEVRQGLKTYSNWPTYPQLYVSGELIGGLDIIKE 685
CGFS+Q++EILN I++ +FDI DEEVRQGLK YSNWPTYPQLYV GEL+GGLDI+KE
Sbjct: 260 CGFSRQILEILNSTGIEYETFDILEDEEVRQGLKAYSNWPTYPQLYVKGELVGGLDIVKE 319
Query: 686 LEASKEL 706
L+ + EL
Sbjct: 320 LKENGEL 326
Score = 131 bits (329), Expect = 1e-30
Identities = 81/186 (43%), Positives = 110/186 (59%), Gaps = 14/186 (7%)
Frame = +2
Query: 491 PQEPRCG-FSKQMVEILNKHNIQFSSFDIFSDEEVRQGLKTY--SNWPTYPQLYVSGELI 661
P P+C + M E+ +H Q SF E V + + Y S+ PT+ + + + I
Sbjct: 40 PWAPQCAQMNDVMAELAKEH--QQVSFVKLEAEAVPEVSEKYEISSVPTF-LFFKNSQKI 96
Query: 662 GGLD------IIKELEASKELDTICPKA---PK--LEERLKVLTNKASVMLFMKGNKQEA 808
LD + K+++ + P PK L RLK LT+ A MLFMKG QE
Sbjct: 97 DRLDGAHAPELTKKVQRHASSGSFSPSGSEHPKEDLSLRLKKLTHAAPCMLFMKGTPQEP 156
Query: 809 KCGFSRQILEILNSTGVDYETFDILEDEEVRQGLKTYSNWPTYPQLYVKGELVGGLDIVK 988
+CGFS+Q++EILN + + +FDI DEEVRQGLKTYS+WPTYPQLYV GEL+GGLDI+K
Sbjct: 157 RCGFSKQMVEILNKHNIQFSSFDIFSDEEVRQGLKTYSSWPTYPQLYVSGELIGGLDIIK 216
Query: 989 ELKEKR 1006
EL+ +
Sbjct: 217 ELEASK 222
>ref|NP_001093773.1| glutaredoxin-related protein 5, mitochondrial [Bos taurus].
Length = 158
Score = 93.2 bits (230), Expect = 3e-19
Identities = 40/88 (45%), Positives = 62/88 (70%), Gaps = 1/88 (1%)
Frame = +2
Query: 740 ERLKVLTNKASVMLFMKGNKQEAKCGFSRQILEILNSTGV-DYETFDILEDEEVRQGLKT 916
E L L K V++F+KG ++ +CGFS +++IL GV DY +++L+D ++RQG+K
Sbjct: 44 EHLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPQLRQGIKD 103
Query: 917 YSNWPTYPQLYVKGELVGGLDIVKELKE 1000
YSNWPT PQ+Y+ GE VGG DI+ ++ +
Sbjct: 104 YSNWPTIPQVYLNGEFVGGCDILLQMHQ 131
Score = 92.8 bits (229), Expect = 4e-19
Identities = 38/93 (40%), Positives = 66/93 (70%), Gaps = 1/93 (1%)
Frame = +2
Query: 431 SLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILNKHNIQ-FSSFDIFSDEEVRQGLK 607
S L L ++F+KGTP++P+CGFS +V+IL H ++ ++++++ D ++RQG+K
Sbjct: 43 SEHLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPQLRQGIK 102
Query: 608 TYSNWPTYPQLYVSGELIGGLDIIKELEASKEL 706
YSNWPT PQ+Y++GE +GG DI+ ++ + +L
Sbjct: 103 DYSNWPTIPQVYLNGEFVGGCDILLQMHQNGDL 135
>ref|NP_001071354.1| thioredoxin-like protein 1 [Bos taurus].
Length = 289
Score = 55.5 bits (132), Expect = 8e-08
Identities = 31/103 (30%), Positives = 51/103 (49%)
Frame = +2
Query: 68 VVEVGSAGQFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEA 247
V VGS F+ L L VV F C ++ + ++ ++PQ F++++
Sbjct: 4 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ 63
Query: 248 VPEVSEKYGISSVPTFLFFKNSQSIDRLDGAHAPELTKKVQRH 376
+ IS+ PTFLFF+N ID+ GA A L +K+++H
Sbjct: 64 CQGTAATNKISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQH 106
>ref|NP_776393.1| thioredoxin [Bos taurus].
Length = 105
Score = 53.9 bits (128), Expect = 2e-07
Identities = 26/96 (27%), Positives = 49/96 (51%)
Frame = +2
Query: 68 VVEVGSAGQFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEA 247
V ++ S F+E L + L+VV F A W C + L++++ V F++++ +
Sbjct: 2 VKQIESKYAFQEALNSAGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDD 61
Query: 248 VPEVSEKYGISSVPTFLFFKNSQSIDRLDGAHAPEL 355
+V+ + + +PTF FFK Q + GA+ +L
Sbjct: 62 CQDVAAECEVKCMPTFQFFKKGQKVGEFSGANKEKL 97
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,020,354
Number of extensions: 1029340
Number of successful extensions: 3426
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3413
Number of HSP's successfully gapped: 8
Length of query: 346
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 243
Effective length of database: 14,273,310
Effective search space: 3468414330
Effective search space used: 3468414330
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-012698
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012698
(1039 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535061.2| PREDICTED: similar to Thioredoxin-like 2 protei... 577 e-167
Alignment gi|XP_532029.2| PREDICTED: similar to Thioredoxin (ATL-derived ... 52 9e-07
Alignment gi|XP_541090.2| PREDICTED: similar to Thioredoxin-like protein ... 49 6e-06
>ref|XP_535061.2| PREDICTED: similar to Thioredoxin-like 2 protein (PKC-interacting
cousin of thioredoxin) (PKCq-interacting protein)
(PKC-theta-interacting protein) [Canis familiaris].
Length = 333
Score = 577 bits (1486), Expect(2) = e-167
Identities = 288/311 (92%), Positives = 293/311 (94%)
Frame = +2
Query: 68 VVEVGSAGQFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEA 247
VVEVGSA QFEELLRLRAKSL+VVHFWAPWAPQC QMNDVMAELAKEHPQVSFVKLEAEA
Sbjct: 11 VVEVGSAPQFEELLRLRAKSLVVVHFWAPWAPQCVQMNDVMAELAKEHPQVSFVKLEAEA 70
Query: 248 VPEVSEKYGISSVPTFLFFKNSQSIDRLDGAHAPELTKKVQRHAXXXXXXXXXXEHLKED 427
VPEVSEKY ISSVPTFL FKNSQ IDRLDGAHAPELTKKVQRHA EH KED
Sbjct: 71 VPEVSEKYEISSVPTFLLFKNSQKIDRLDGAHAPELTKKVQRHASSGSFPPSTNEHPKED 130
Query: 428 LSLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILNKHNIQFSSFDIFSDEEVRQGLK 607
L +RLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILNKHNIQFSSFDIFSDEEVRQGLK
Sbjct: 131 LHVRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILNKHNIQFSSFDIFSDEEVRQGLK 190
Query: 608 TYSNWPTYPQLYVSGELIGGLDIIKELEASKELDTICPKAPKLEERLKVLTNKASVMLFM 787
TYSNWPTYPQLYVSGELIGGLDIIKELEAS ELDTICPKAPKLEERLKVLTNKASVMLFM
Sbjct: 191 TYSNWPTYPQLYVSGELIGGLDIIKELEASDELDTICPKAPKLEERLKVLTNKASVMLFM 250
Query: 788 KGNKQEAKCGFSRQILEILNSTGVDYETFDILEDEEVRQGLKTYSNWPTYPQLYVKGELV 967
KGNKQEAKCGFS+QILEILNSTGV+YETFDILEDEEVRQGLKTYSNWPTYPQLYVKGELV
Sbjct: 251 KGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTYSNWPTYPQLYVKGELV 310
Query: 968 GGLDIVKELKE 1000
GGLDIVKELK+
Sbjct: 311 GGLDIVKELKD 321
Score = 30.0 bits (66), Expect(2) = e-167
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +3
Query: 981 LLRN*KKNGELLPILKGEN 1037
+++ K NGELLP+LKGEN
Sbjct: 315 IVKELKDNGELLPVLKGEN 333
Score = 134 bits (336), Expect = 2e-31
Identities = 63/93 (67%), Positives = 75/93 (80%)
Frame = +2
Query: 428 LSLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILNKHNIQFSSFDIFSDEEVRQGLK 607
L RLK LT+ A MLFMKG QE +CGFSKQ++EILN +++ +FDI DEEVRQGLK
Sbjct: 233 LEERLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLK 292
Query: 608 TYSNWPTYPQLYVSGELIGGLDIIKELEASKEL 706
TYSNWPTYPQLYV GEL+GGLDI+KEL+ + EL
Sbjct: 293 TYSNWPTYPQLYVKGELVGGLDIVKELKDNGEL 325
>ref|XP_532029.2| PREDICTED: similar to Thioredoxin (ATL-derived factor) (ADF)
(Surface associated sulphydryl protein) (SASP) [Canis
familiaris].
Length = 219
Score = 52.0 bits (123), Expect = 9e-07
Identities = 24/87 (27%), Positives = 44/87 (50%)
Frame = +2
Query: 95 FEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEAVPEVSEKYG 274
F+E L L+VV F A W C + L++++ V F++++ + +V+ +
Sbjct: 125 FQEALNSAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECE 184
Query: 275 ISSVPTFLFFKNSQSIDRLDGAHAPEL 355
+ +PTF FFK Q + GA+ +L
Sbjct: 185 VKCMPTFQFFKKGQKVGEFSGANKEKL 211
>ref|XP_541090.2| PREDICTED: similar to Thioredoxin-like protein 1 (32 kDa
thioredoxin-related protein) [Canis familiaris].
Length = 267
Score = 49.3 bits (116), Expect = 6e-06
Identities = 21/70 (30%), Positives = 40/70 (57%)
Frame = +2
Query: 167 CAQMNDVMAELAKEHPQVSFVKLEAEAVPEVSEKYGISSVPTFLFFKNSQSIDRLDGAHA 346
C ++ + ++ ++PQ F++++ + IS+ PTFLFF+N ID+ GA A
Sbjct: 12 CLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISATPTFLFFRNKVRIDQYQGADA 71
Query: 347 PELTKKVQRH 376
L +K+++H
Sbjct: 72 VGLEEKIKQH 81
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,604,095
Number of extensions: 1030903
Number of successful extensions: 3616
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3604
Number of HSP's successfully gapped: 5
Length of query: 346
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 242
Effective length of database: 15,407,560
Effective search space: 3728629520
Effective search space used: 3728629520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012698
(1039 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230825.1| glutaredoxin 3 [Sus scrofa]. 596 e-173
Alignment gi|XP_001929028.1| PREDICTED: glutaredoxin-related protein 5, m... 93 2e-19
Alignment gi|NP_999478.1| thioredoxin [Sus scrofa]. 54 1e-07
Alignment gi|XP_003361328.1| PREDICTED: thioredoxin domain-containing pro... 48 8e-06
>ref|NP_001230825.1| glutaredoxin 3 [Sus scrofa].
Length = 334
Score = 596 bits (1536), Expect(2) = e-173
Identities = 299/311 (96%), Positives = 299/311 (96%)
Frame = +2
Query: 68 VVEVGSAGQFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEA 247
VVEVGSAGQFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEA
Sbjct: 12 VVEVGSAGQFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEA 71
Query: 248 VPEVSEKYGISSVPTFLFFKNSQSIDRLDGAHAPELTKKVQRHAXXXXXXXXXXEHLKED 427
VPEVSEKYGISSVPTFLFFKNSQSIDRLDGAHAPELTKKVQRHA EHLKED
Sbjct: 72 VPEVSEKYGISSVPTFLFFKNSQSIDRLDGAHAPELTKKVQRHASSSSFPSGGSEHLKED 131
Query: 428 LSLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILNKHNIQFSSFDIFSDEEVRQGLK 607
LSLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILNKHNIQFSSFDIFSDEEVRQGLK
Sbjct: 132 LSLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILNKHNIQFSSFDIFSDEEVRQGLK 191
Query: 608 TYSNWPTYPQLYVSGELIGGLDIIKELEASKELDTICPKAPKLEERLKVLTNKASVMLFM 787
TYSNWPTYPQ YVSGELIGGLDIIKELEASKELDTICPKAPKLEERLKVLTNKASVMLFM
Sbjct: 192 TYSNWPTYPQPYVSGELIGGLDIIKELEASKELDTICPKAPKLEERLKVLTNKASVMLFM 251
Query: 788 KGNKQEAKCGFSRQILEILNSTGVDYETFDILEDEEVRQGLKTYSNWPTYPQLYVKGELV 967
KGNKQEAKCGFSRQILEILNSTGVDYETFDILEDEEVRQGLKTYSNWPTYPQLYVKGELV
Sbjct: 252 KGNKQEAKCGFSRQILEILNSTGVDYETFDILEDEEVRQGLKTYSNWPTYPQLYVKGELV 311
Query: 968 GGLDIVKELKE 1000
GGLDIVK LKE
Sbjct: 312 GGLDIVKGLKE 322
Score = 31.2 bits (69), Expect(2) = e-173
Identities = 13/19 (68%), Positives = 17/19 (89%)
Frame = +3
Query: 981 LLRN*KKNGELLPILKGEN 1037
+++ K+NGELLPILKGEN
Sbjct: 316 IVKGLKENGELLPILKGEN 334
Score = 129 bits (325), Expect = 2e-30
Identities = 61/93 (65%), Positives = 73/93 (78%)
Frame = +2
Query: 428 LSLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILNKHNIQFSSFDIFSDEEVRQGLK 607
L RLK LT+ A MLFMKG QE +CGFS+Q++EILN + + +FDI DEEVRQGLK
Sbjct: 234 LEERLKVLTNKASVMLFMKGNKQEAKCGFSRQILEILNSTGVDYETFDILEDEEVRQGLK 293
Query: 608 TYSNWPTYPQLYVSGELIGGLDIIKELEASKEL 706
TYSNWPTYPQLYV GEL+GGLDI+K L+ + EL
Sbjct: 294 TYSNWPTYPQLYVKGELVGGLDIVKGLKENGEL 326
Score = 127 bits (320), Expect = 8e-30
Identities = 78/185 (42%), Positives = 105/185 (56%), Gaps = 13/185 (7%)
Frame = +2
Query: 491 PQEPRCGFSKQMVEILNKHNIQFSSFDIFSDEEVRQGLKTY--SNWPTYPQLYVSGELIG 664
P P+C ++ L K + Q S F E V + + Y S+ PT+ + + + I
Sbjct: 40 PWAPQCAQMNDVMAELAKEHPQVS-FVKLEAEAVPEVSEKYGISSVPTF-LFFKNSQSID 97
Query: 665 GLDIIKELEASKELDTICPKAP-----------KLEERLKVLTNKASVMLFMKGNKQEAK 811
LD E +K++ + L RLK LT+ A MLFMKG QE +
Sbjct: 98 RLDGAHAPELTKKVQRHASSSSFPSGGSEHLKEDLSLRLKKLTHAAPCMLFMKGTPQEPR 157
Query: 812 CGFSRQILEILNSTGVDYETFDILEDEEVRQGLKTYSNWPTYPQLYVKGELVGGLDIVKE 991
CGFS+Q++EILN + + +FDI DEEVRQGLKTYSNWPTYPQ YV GEL+GGLDI+KE
Sbjct: 158 CGFSKQMVEILNKHNIQFSSFDIFSDEEVRQGLKTYSNWPTYPQPYVSGELIGGLDIIKE 217
Query: 992 LKEKR 1006
L+ +
Sbjct: 218 LEASK 222
>ref|XP_001929028.1| PREDICTED: glutaredoxin-related protein 5, mitochondrial-like [Sus
scrofa].
Length = 154
Score = 93.2 bits (230), Expect = 2e-19
Identities = 40/88 (45%), Positives = 62/88 (70%), Gaps = 1/88 (1%)
Frame = +2
Query: 740 ERLKVLTNKASVMLFMKGNKQEAKCGFSRQILEILNSTGV-DYETFDILEDEEVRQGLKT 916
E L L K V++F+KG ++ +CGFS +++IL GV DY +++L+D ++RQG+K
Sbjct: 40 EHLDTLVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPQLRQGIKD 99
Query: 917 YSNWPTYPQLYVKGELVGGLDIVKELKE 1000
YSNWPT PQ+Y+ GE VGG DI+ ++ +
Sbjct: 100 YSNWPTIPQVYLNGEFVGGCDILLQMHQ 127
Score = 92.4 bits (228), Expect = 4e-19
Identities = 35/80 (43%), Positives = 63/80 (78%), Gaps = 1/80 (1%)
Frame = +2
Query: 470 MLFMKGTPQEPRCGFSKQMVEILNKHNIQ-FSSFDIFSDEEVRQGLKTYSNWPTYPQLYV 646
++F+KGTP++P+CGFS +V+IL H ++ ++++++ D ++RQG+K YSNWPT PQ+Y+
Sbjct: 52 VVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPQLRQGIKDYSNWPTIPQVYL 111
Query: 647 SGELIGGLDIIKELEASKEL 706
+GE +GG DI+ ++ + +L
Sbjct: 112 NGEFVGGCDILLQMHQNGDL 131
>ref|NP_999478.1| thioredoxin [Sus scrofa].
Length = 105
Score = 54.3 bits (129), Expect = 1e-07
Identities = 26/96 (27%), Positives = 49/96 (51%)
Frame = +2
Query: 68 VVEVGSAGQFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEA 247
V ++ S F+E L + L+VV F A W C + L++++ V F++++ +
Sbjct: 2 VKQIESKYAFQEALNSAGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDD 61
Query: 248 VPEVSEKYGISSVPTFLFFKNSQSIDRLDGAHAPEL 355
+V+ + + +PTF FFK Q + GA+ +L
Sbjct: 62 CQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKL 97
>ref|XP_003361328.1| PREDICTED: thioredoxin domain-containing protein 2-like [Sus
scrofa].
Length = 483
Score = 48.1 bits (113), Expect = 8e-06
Identities = 22/82 (26%), Positives = 40/82 (48%)
Frame = +2
Query: 95 FEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEAVPEVSEKYG 274
F+ L+ + L+ V F W C M + L+ +H V F++++A+ E+ +
Sbjct: 389 FDVALKEAGERLVAVDFSTTWCRPCRAMKPIFRSLSVKHQDVLFLEVDADECEELVKDLK 448
Query: 275 ISSVPTFLFFKNSQSIDRLDGA 340
I +PTF F+K + + GA
Sbjct: 449 IVCIPTFHFYKKEEKVGEFSGA 470
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,872,469
Number of extensions: 716720
Number of successful extensions: 2187
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2176
Number of HSP's successfully gapped: 8
Length of query: 346
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 246
Effective length of database: 8,854,232
Effective search space: 2178141072
Effective search space used: 2178141072
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012698
(1039 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_075629.2| glutaredoxin-3 [Mus musculus]. 574 e-166
Alignment gi|NP_082695.1| glutaredoxin-related protein 5, mitochondrial [... 95 1e-19
Alignment gi|NP_058072.2| thioredoxin-like protein 1 [Mus musculus]. 56 4e-08
Alignment gi|NP_001139474.1| thioredoxin domain-containing protein 2 isof... 56 5e-08
Alignment gi|NP_705739.2| thioredoxin domain-containing protein 2 isoform... 56 5e-08
Alignment gi|NP_035790.1| thioredoxin [Mus musculus]. 51 1e-06
>ref|NP_075629.2| glutaredoxin-3 [Mus musculus].
Length = 337
Score = 574 bits (1480), Expect(2) = e-166
Identities = 284/311 (91%), Positives = 294/311 (94%)
Frame = +2
Query: 68 VVEVGSAGQFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEA 247
VVEVGSA QFEELLRL+ KSLLVVHFWAPWAPQC QMNDVMAELAKEHP VSFVKLEAEA
Sbjct: 15 VVEVGSAQQFEELLRLKTKSLLVVHFWAPWAPQCVQMNDVMAELAKEHPHVSFVKLEAEA 74
Query: 248 VPEVSEKYGISSVPTFLFFKNSQSIDRLDGAHAPELTKKVQRHAXXXXXXXXXXEHLKED 427
VPEVSEKY ISSVPTFLFFKNSQ +DRLDGAHAPELTKKVQRH EHLKED
Sbjct: 75 VPEVSEKYEISSVPTFLFFKNSQKVDRLDGAHAPELTKKVQRHVSSGAFPPSTNEHLKED 134
Query: 428 LSLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILNKHNIQFSSFDIFSDEEVRQGLK 607
LSLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEIL+KHNIQFSSFDIFSDEEVRQGLK
Sbjct: 135 LSLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLK 194
Query: 608 TYSNWPTYPQLYVSGELIGGLDIIKELEASKELDTICPKAPKLEERLKVLTNKASVMLFM 787
TYSNWPTYPQLYVSGELIGGLDIIKELEAS+ELDTICPKAPKLEERLKVLTNKASVMLFM
Sbjct: 195 TYSNWPTYPQLYVSGELIGGLDIIKELEASEELDTICPKAPKLEERLKVLTNKASVMLFM 254
Query: 788 KGNKQEAKCGFSRQILEILNSTGVDYETFDILEDEEVRQGLKTYSNWPTYPQLYVKGELV 967
KGNKQEAKCGFS+QILEILNSTGV+YETFDILEDEEVRQGLKT+SNWPTYPQLYV+G+LV
Sbjct: 255 KGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNWPTYPQLYVRGDLV 314
Query: 968 GGLDIVKELKE 1000
GGLDIVKELK+
Sbjct: 315 GGLDIVKELKD 325
Score = 30.4 bits (67), Expect(2) = e-166
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +3
Query: 981 LLRN*KKNGELLPILKGEN 1037
+++ K NGELLPILKGEN
Sbjct: 319 IVKELKDNGELLPILKGEN 337
Score = 130 bits (328), Expect = 1e-30
Identities = 61/93 (65%), Positives = 75/93 (80%)
Frame = +2
Query: 428 LSLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILNKHNIQFSSFDIFSDEEVRQGLK 607
L RLK LT+ A MLFMKG QE +CGFSKQ++EILN +++ +FDI DEEVRQGLK
Sbjct: 237 LEERLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLK 296
Query: 608 TYSNWPTYPQLYVSGELIGGLDIIKELEASKEL 706
T+SNWPTYPQLYV G+L+GGLDI+KEL+ + EL
Sbjct: 297 TFSNWPTYPQLYVRGDLVGGLDIVKELKDNGEL 329
>ref|NP_082695.1| glutaredoxin-related protein 5, mitochondrial [Mus musculus].
Length = 152
Score = 94.7 bits (234), Expect = 1e-19
Identities = 41/88 (46%), Positives = 63/88 (71%), Gaps = 1/88 (1%)
Frame = +2
Query: 740 ERLKVLTNKASVMLFMKGNKQEAKCGFSRQILEILNSTGV-DYETFDILEDEEVRQGLKT 916
E+L L K V++F+KG ++ +CGFS +++IL GV DY +++L+D E+RQG+K
Sbjct: 39 EQLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKD 98
Query: 917 YSNWPTYPQLYVKGELVGGLDIVKELKE 1000
YSNWPT PQ+Y+ GE VGG DI+ ++ +
Sbjct: 99 YSNWPTIPQVYLNGEFVGGCDILLQMHQ 126
Score = 94.0 bits (232), Expect = 2e-19
Identities = 38/91 (41%), Positives = 66/91 (72%), Gaps = 1/91 (1%)
Frame = +2
Query: 437 RLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILNKHNIQ-FSSFDIFSDEEVRQGLKTY 613
+L L ++F+KGTP++P+CGFS +V+IL H ++ ++++++ D E+RQG+K Y
Sbjct: 40 QLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDY 99
Query: 614 SNWPTYPQLYVSGELIGGLDIIKELEASKEL 706
SNWPT PQ+Y++GE +GG DI+ ++ + +L
Sbjct: 100 SNWPTIPQVYLNGEFVGGCDILLQMHQNGDL 130
>ref|NP_058072.2| thioredoxin-like protein 1 [Mus musculus].
Length = 289
Score = 56.2 bits (134), Expect = 4e-08
Identities = 31/103 (30%), Positives = 51/103 (49%)
Frame = +2
Query: 68 VVEVGSAGQFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEA 247
V VGS F+ L L VV F C ++ + ++ ++PQ F++++
Sbjct: 4 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ 63
Query: 248 VPEVSEKYGISSVPTFLFFKNSQSIDRLDGAHAPELTKKVQRH 376
+ IS+ PTFLFF+N ID+ GA A L +K+++H
Sbjct: 64 CQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQH 106
>ref|NP_001139474.1| thioredoxin domain-containing protein 2 isoform 1 [Mus musculus].
Length = 550
Score = 55.8 bits (133), Expect = 5e-08
Identities = 26/92 (28%), Positives = 48/92 (52%)
Frame = +2
Query: 92 QFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEAVPEVSEKY 271
+FEE+L+ + L+ V F A W C M + L+ +H V F++++ E ++ +
Sbjct: 455 EFEEVLKDAGEKLVAVDFSAAWCGPCRMMKPLFHSLSLKHEDVIFLEVDTEDCEQLVQDC 514
Query: 272 GISSVPTFLFFKNSQSIDRLDGAHAPELTKKV 367
I +PTF F+KN + + GA +L + +
Sbjct: 515 EIFHLPTFQFYKNEEKVGEFSGALVGKLERSI 546
>ref|NP_705739.2| thioredoxin domain-containing protein 2 isoform 2 [Mus musculus].
Length = 543
Score = 55.8 bits (133), Expect = 5e-08
Identities = 26/92 (28%), Positives = 48/92 (52%)
Frame = +2
Query: 92 QFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEAVPEVSEKY 271
+FEE+L+ + L+ V F A W C M + L+ +H V F++++ E ++ +
Sbjct: 448 EFEEVLKDAGEKLVAVDFSAAWCGPCRMMKPLFHSLSLKHEDVIFLEVDTEDCEQLVQDC 507
Query: 272 GISSVPTFLFFKNSQSIDRLDGAHAPELTKKV 367
I +PTF F+KN + + GA +L + +
Sbjct: 508 EIFHLPTFQFYKNEEKVGEFSGALVGKLERSI 539
>ref|NP_035790.1| thioredoxin [Mus musculus].
Length = 105
Score = 51.2 bits (121), Expect = 1e-06
Identities = 25/101 (24%), Positives = 46/101 (45%)
Frame = +2
Query: 77 VGSAGQFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEAVPE 256
+ S F+E L L+VV F A W C + L ++ V F++++ + +
Sbjct: 5 IESKEAFQEALAAAGDKLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQD 64
Query: 257 VSEKYGISSVPTFLFFKNSQSIDRLDGAHAPELTKKVQRHA 379
V+ + +PTF F+K Q + GA+ +L + +A
Sbjct: 65 VAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEASITEYA 105
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,777,165
Number of extensions: 839647
Number of successful extensions: 2818
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2803
Number of HSP's successfully gapped: 9
Length of query: 346
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 244
Effective length of database: 12,553,887
Effective search space: 3063148428
Effective search space used: 3063148428
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012698
(1039 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001186797.1| glutaredoxin-3 [Homo sapiens]. 573 e-165
Alignment gi|NP_006532.2| glutaredoxin-3 [Homo sapiens]. 573 e-165
Alignment gi|NP_057501.2| glutaredoxin-related protein 5, mitochondrial p... 95 1e-19
Alignment gi|NP_004777.1| thioredoxin-like protein 1 [Homo sapiens]. 56 5e-08
Alignment gi|NP_003320.2| thioredoxin [Homo sapiens]. 54 3e-07
Alignment gi|NP_115619.4| thioredoxin domain-containing protein 2 isoform... 53 4e-07
Alignment gi|NP_001091999.1| thioredoxin domain-containing protein 2 isof... 53 4e-07
Alignment gi|NP_006840.2| protein disulfide-isomerase A2 precursor [Homo ... 49 1e-05
>ref|NP_001186797.1| glutaredoxin-3 [Homo sapiens].
Length = 335
Score = 573 bits (1476), Expect(2) = e-165
Identities = 286/311 (91%), Positives = 294/311 (94%)
Frame = +2
Query: 68 VVEVGSAGQFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEA 247
V EVGSAGQFEELLRL+AKSLLVVHFWAPWAPQCAQMN+VMAELAKE PQVSFVKLEAE
Sbjct: 13 VEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEG 72
Query: 248 VPEVSEKYGISSVPTFLFFKNSQSIDRLDGAHAPELTKKVQRHAXXXXXXXXXXEHLKED 427
VPEVSEKY ISSVPTFLFFKNSQ IDRLDGAHAPELTKKVQRHA EHLKED
Sbjct: 73 VPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASSGSFLPSANEHLKED 132
Query: 428 LSLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILNKHNIQFSSFDIFSDEEVRQGLK 607
L+LRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEIL+KHNIQFSSFDIFSDEEVRQGLK
Sbjct: 133 LNLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLK 192
Query: 608 TYSNWPTYPQLYVSGELIGGLDIIKELEASKELDTICPKAPKLEERLKVLTNKASVMLFM 787
YS+WPTYPQLYVSGELIGGLDIIKELEAS+ELDTICPKAPKLEERLKVLTNKASVMLFM
Sbjct: 193 AYSSWPTYPQLYVSGELIGGLDIIKELEASEELDTICPKAPKLEERLKVLTNKASVMLFM 252
Query: 788 KGNKQEAKCGFSRQILEILNSTGVDYETFDILEDEEVRQGLKTYSNWPTYPQLYVKGELV 967
KGNKQEAKCGFS+QILEILNSTGV+YETFDILEDEEVRQGLK YSNWPTYPQLYVKGELV
Sbjct: 253 KGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQLYVKGELV 312
Query: 968 GGLDIVKELKE 1000
GGLDIVKELKE
Sbjct: 313 GGLDIVKELKE 323
Score = 30.0 bits (66), Expect(2) = e-165
Identities = 12/19 (63%), Positives = 17/19 (89%)
Frame = +3
Query: 981 LLRN*KKNGELLPILKGEN 1037
+++ K+NGELLPIL+GEN
Sbjct: 317 IVKELKENGELLPILRGEN 335
Score = 132 bits (332), Expect = 5e-31
Identities = 62/93 (66%), Positives = 74/93 (79%)
Frame = +2
Query: 428 LSLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILNKHNIQFSSFDIFSDEEVRQGLK 607
L RLK LT+ A MLFMKG QE +CGFSKQ++EILN +++ +FDI DEEVRQGLK
Sbjct: 235 LEERLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLK 294
Query: 608 TYSNWPTYPQLYVSGELIGGLDIIKELEASKEL 706
YSNWPTYPQLYV GEL+GGLDI+KEL+ + EL
Sbjct: 295 AYSNWPTYPQLYVKGELVGGLDIVKELKENGEL 327
>ref|NP_006532.2| glutaredoxin-3 [Homo sapiens].
Length = 335
Score = 573 bits (1476), Expect(2) = e-165
Identities = 286/311 (91%), Positives = 294/311 (94%)
Frame = +2
Query: 68 VVEVGSAGQFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEA 247
V EVGSAGQFEELLRL+AKSLLVVHFWAPWAPQCAQMN+VMAELAKE PQVSFVKLEAE
Sbjct: 13 VEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEG 72
Query: 248 VPEVSEKYGISSVPTFLFFKNSQSIDRLDGAHAPELTKKVQRHAXXXXXXXXXXEHLKED 427
VPEVSEKY ISSVPTFLFFKNSQ IDRLDGAHAPELTKKVQRHA EHLKED
Sbjct: 73 VPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASSGSFLPSANEHLKED 132
Query: 428 LSLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILNKHNIQFSSFDIFSDEEVRQGLK 607
L+LRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEIL+KHNIQFSSFDIFSDEEVRQGLK
Sbjct: 133 LNLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLK 192
Query: 608 TYSNWPTYPQLYVSGELIGGLDIIKELEASKELDTICPKAPKLEERLKVLTNKASVMLFM 787
YS+WPTYPQLYVSGELIGGLDIIKELEAS+ELDTICPKAPKLEERLKVLTNKASVMLFM
Sbjct: 193 AYSSWPTYPQLYVSGELIGGLDIIKELEASEELDTICPKAPKLEERLKVLTNKASVMLFM 252
Query: 788 KGNKQEAKCGFSRQILEILNSTGVDYETFDILEDEEVRQGLKTYSNWPTYPQLYVKGELV 967
KGNKQEAKCGFS+QILEILNSTGV+YETFDILEDEEVRQGLK YSNWPTYPQLYVKGELV
Sbjct: 253 KGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQLYVKGELV 312
Query: 968 GGLDIVKELKE 1000
GGLDIVKELKE
Sbjct: 313 GGLDIVKELKE 323
Score = 30.0 bits (66), Expect(2) = e-165
Identities = 12/19 (63%), Positives = 17/19 (89%)
Frame = +3
Query: 981 LLRN*KKNGELLPILKGEN 1037
+++ K+NGELLPIL+GEN
Sbjct: 317 IVKELKENGELLPILRGEN 335
Score = 132 bits (332), Expect = 5e-31
Identities = 62/93 (66%), Positives = 74/93 (79%)
Frame = +2
Query: 428 LSLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILNKHNIQFSSFDIFSDEEVRQGLK 607
L RLK LT+ A MLFMKG QE +CGFSKQ++EILN +++ +FDI DEEVRQGLK
Sbjct: 235 LEERLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLK 294
Query: 608 TYSNWPTYPQLYVSGELIGGLDIIKELEASKEL 706
YSNWPTYPQLYV GEL+GGLDI+KEL+ + EL
Sbjct: 295 AYSNWPTYPQLYVKGELVGGLDIVKELKENGEL 327
>ref|NP_057501.2| glutaredoxin-related protein 5, mitochondrial precursor [Homo
sapiens].
Length = 157
Score = 94.7 bits (234), Expect = 1e-19
Identities = 41/88 (46%), Positives = 63/88 (71%), Gaps = 1/88 (1%)
Frame = +2
Query: 740 ERLKVLTNKASVMLFMKGNKQEAKCGFSRQILEILNSTGV-DYETFDILEDEEVRQGLKT 916
E+L L K V++F+KG ++ +CGFS +++IL GV DY +++L+D E+RQG+K
Sbjct: 43 EQLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKD 102
Query: 917 YSNWPTYPQLYVKGELVGGLDIVKELKE 1000
YSNWPT PQ+Y+ GE VGG DI+ ++ +
Sbjct: 103 YSNWPTIPQVYLNGEFVGGCDILLQMHQ 130
Score = 94.0 bits (232), Expect = 2e-19
Identities = 38/91 (41%), Positives = 66/91 (72%), Gaps = 1/91 (1%)
Frame = +2
Query: 437 RLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILNKHNIQ-FSSFDIFSDEEVRQGLKTY 613
+L L ++F+KGTP++P+CGFS +V+IL H ++ ++++++ D E+RQG+K Y
Sbjct: 44 QLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDY 103
Query: 614 SNWPTYPQLYVSGELIGGLDIIKELEASKEL 706
SNWPT PQ+Y++GE +GG DI+ ++ + +L
Sbjct: 104 SNWPTIPQVYLNGEFVGGCDILLQMHQNGDL 134
>ref|NP_004777.1| thioredoxin-like protein 1 [Homo sapiens].
Length = 289
Score = 56.2 bits (134), Expect = 5e-08
Identities = 31/103 (30%), Positives = 51/103 (49%)
Frame = +2
Query: 68 VVEVGSAGQFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEA 247
V VGS F+ L L VV F C ++ + ++ ++PQ F++++
Sbjct: 4 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ 63
Query: 248 VPEVSEKYGISSVPTFLFFKNSQSIDRLDGAHAPELTKKVQRH 376
+ IS+ PTFLFF+N ID+ GA A L +K+++H
Sbjct: 64 CQGTAATNNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQH 106
>ref|NP_003320.2| thioredoxin [Homo sapiens].
Length = 105
Score = 53.5 bits (127), Expect = 3e-07
Identities = 26/96 (27%), Positives = 48/96 (50%)
Frame = +2
Query: 68 VVEVGSAGQFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEA 247
V ++ S F+E L L+VV F A W C + L++++ V F++++ +
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 248 VPEVSEKYGISSVPTFLFFKNSQSIDRLDGAHAPEL 355
+V+ + + +PTF FFK Q + GA+ +L
Sbjct: 62 CQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKL 97
>ref|NP_115619.4| thioredoxin domain-containing protein 2 isoform 1 [Homo sapiens].
Length = 486
Score = 53.1 bits (126), Expect = 4e-07
Identities = 28/86 (32%), Positives = 43/86 (50%)
Frame = +2
Query: 83 SAGQFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEAVPEVS 262
S FE L+ + L+ V F A W C + L+ +H V F++++A+ EV
Sbjct: 388 SKEDFEASLKEAGERLVAVDFSATWCGPCRTIRPFFHALSVKHEDVVFLEVDADNCEEVV 447
Query: 263 EKYGISSVPTFLFFKNSQSIDRLDGA 340
+ I VPTF F+K + +D L GA
Sbjct: 448 RECAIMCVPTFQFYKKEEKVDELCGA 473
>ref|NP_001091999.1| thioredoxin domain-containing protein 2 isoform 2 [Homo sapiens].
Length = 553
Score = 53.1 bits (126), Expect = 4e-07
Identities = 28/86 (32%), Positives = 43/86 (50%)
Frame = +2
Query: 83 SAGQFEELLRLRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHPQVSFVKLEAEAVPEVS 262
S FE L+ + L+ V F A W C + L+ +H V F++++A+ EV
Sbjct: 455 SKEDFEASLKEAGERLVAVDFSATWCGPCRTIRPFFHALSVKHEDVVFLEVDADNCEEVV 514
Query: 263 EKYGISSVPTFLFFKNSQSIDRLDGA 340
+ I VPTF F+K + +D L GA
Sbjct: 515 RECAIMCVPTFQFYKKEEKVDELCGA 540
>ref|NP_006840.2| protein disulfide-isomerase A2 precursor [Homo sapiens].
Length = 525
Score = 48.5 bits (114), Expect = 1e-05
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Frame = +2
Query: 107 LRLRAKSLLVVHFWAPWAPQCAQM----NDVMAELAKEHPQVSFVKLEAEAVPEVSEKYG 274
L LR L+V F+APW C + + A LA E V+ K++ A E++E++G
Sbjct: 54 LALREHPALLVEFYAPWCGHCQALAPEYSKAAAVLAAESMVVTLAKVDGPAQRELAEEFG 113
Query: 275 ISSVPTFLFFKN 310
++ PT FF+N
Sbjct: 114 VTEYPTLKFFRN 125
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,741,997
Number of extensions: 1002453
Number of successful extensions: 3314
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3293
Number of HSP's successfully gapped: 13
Length of query: 346
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 243
Effective length of database: 14,901,872
Effective search space: 3621154896
Effective search space used: 3621154896
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012698
(1039 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 400 e-109
Sscrofa_ChrX 72 7e-10
>Sscrofa_Chr14
|| Length = 153851969
Score = 400 bits (202), Expect = e-109
Identities = 205/206 (99%)
Strand = Plus / Plus
Query: 306 agaattctcagagcattgaccggttagatggtgcacatgccccagagttgaccaaaaagg 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151206713 agaattctcagagcattgaccggttagatggtgcacatgccccagagttgaccaaaaagg 151206772
Query: 366 ttcagcgacatgcgtccagcagctctttcccatctggcggtagcgagcacctgaaagaag 425
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 151206773 ttcagcgacatgcgtccaggagctctttcccatctggcggtagcgagcacctgaaagaag 151206832
Query: 426 acctcagccttcgcctgaagaagctgacccacgctgccccctgcatgctgttcatgaagg 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151206833 acctcagccttcgcctgaagaagctgacccacgctgccccctgcatgctgttcatgaagg 151206892
Query: 486 gaacaccccaggagccgcgctgcggt 511
||||||||||||||||||||||||||
Sbjct: 151206893 gaacaccccaggagccgcgctgcggt 151206918
Score = 347 bits (175), Expect = 8e-93
Identities = 175/175 (100%)
Strand = Plus / Plus
Query: 509 ggtttcagcaagcagatggtggaaattcttaacaaacataatatccagtttagcagtttt 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151212680 ggtttcagcaagcagatggtggaaattcttaacaaacataatatccagtttagcagtttt 151212739
Query: 569 gatatcttctcagatgaagaagttcgccaaggcctcaaaacctattccaattggcccacc 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151212740 gatatcttctcagatgaagaagttcgccaaggcctcaaaacctattccaattggcccacc 151212799
Query: 629 tacccccagctctatgtttctggagagctcataggaggacttgatataatcaagg 683
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151212800 tacccccagctctatgtttctggagagctcataggaggacttgatataatcaagg 151212854
Score = 216 bits (109), Expect = 2e-53
Identities = 109/109 (100%)
Strand = Plus / Plus
Query: 124 gtccctgctggtggtccatttctgggcaccatgggccccacagtgtgctcagatgaacga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151196177 gtccctgctggtggtccatttctgggcaccatgggccccacagtgtgctcagatgaacga 151196236
Query: 184 tgtgatggccgagttagccaaggagcacccgcaagtttcctttgtgaag 232
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151196237 tgtgatggccgagttagccaaggagcacccgcaagtttcctttgtgaag 151196285
Score = 170 bits (86), Expect = 1e-39
Identities = 92/94 (97%)
Strand = Plus / Plus
Query: 896 gtccggcaggggttgaaaacctactccaactggccgacgtaccctcagctgtatgtgaaa 955
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151219960 gtccgacagggattgaaaacctactccaactggccgacgtaccctcagctgtatgtgaaa 151220019
Query: 956 ggggagctggtcggaggcctggatattgttaagg 989
||||||||||||||||||||||||||||||||||
Sbjct: 151220020 ggggagctggtcggaggcctggatattgttaagg 151220053
Score = 155 bits (78), Expect = 6e-35
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 230 aagttggaggctgaagctgttcctgaagtgtctgaaaaatacggaattagttctgtaccc 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151205897 aagttggaggctgaagctgttcctgaagtgtctgaaaaatacggaattagttctgtaccc 151205956
Query: 290 acctttctgtttttcaag 307
||||||||||||||||||
Sbjct: 151205957 acctttctgtttttcaag 151205974
Score = 129 bits (65), Expect = 3e-27
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 681 aggagctagaagcatctaaagaactagatacaatttgccccaaagctcccaaattagagg 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151213088 aggagctagaagcatctaaagaactagatacaatttgccccaaagctcccaaattagagg 151213147
Query: 741 aaagg 745
|||||
Sbjct: 151213148 aaagg 151213152
Score = 121 bits (61), Expect = 8e-25
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 743 aggctcaaagtactgacaaataaagcttctgtgatgctctttatgaagggaaacaaacag 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151215155 aggctcaaagtactgacaaataaagcttctgtgatgctctttatgaagggaaacaaacag 151215214
Query: 803 g 803
|
Sbjct: 151215215 g 151215215
Score = 109 bits (55), Expect = 3e-21
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 67 tgtggtggaggtcggctccgccgggcagtttgaggagctgctgcgcctaagagccaagt 125
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 151189333 tgtggtggaggtcggctccgccgggcagtttgaggagctgctgcgcctcagagccaagt 151189391
Score = 109 bits (55), Expect = 3e-21
Identities = 55/55 (100%)
Strand = Plus / Plus
Query: 801 aggaagccaagtgtggtttcagcagacaaatcctggaaattctaaatagtactgg 855
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151217062 aggaagccaagtgtggtttcagcagacaaatcctggaaattctaaatagtactgg 151217116
Score = 89.7 bits (45), Expect = 3e-15
Identities = 52/53 (98%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 987 aggaactaaaagaaaaacggtgagctgctgcctatcctgaaaggagaaaacta 1039
|||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 151224525 aggaactaaaagaaaa-cggtgagctgctgcctatcctgaaaggagaaaacta 151224576
Score = 85.7 bits (43), Expect = 4e-14
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 855 gtgtcgactacgagacgttcgacatactggaggatgaggaagt 897
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151219828 gtgtcgactacgagacgttcgacatactggaggatgaggaagt 151219870
>Sscrofa_ChrX
|| Length = 144288218
Score = 71.9 bits (36), Expect = 7e-10
Identities = 39/40 (97%)
Strand = Plus / Minus
Query: 1000 aaaacggtgagctgctgcctatcctgaaaggagaaaacta 1039
|||| |||||||||||||||||||||||||||||||||||
Sbjct: 51460448 aaaatggtgagctgctgcctatcctgaaaggagaaaacta 51460409
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,904,055
Number of extensions: 179
Number of successful extensions: 179
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 12
Length of query: 1039
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1018
Effective length of database: 2,808,413,156
Effective search space: 2858964592808
Effective search space used: 2858964592808
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)