Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012699
(963 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776577.1| peptidyl-prolyl cis-trans isomerase B [Bos taur... 342 4e-94
Alignment gi|NP_001070378.1| peptidyl-prolyl cis-trans isomerase C [Bos t... 260 1e-69
Alignment gi|XP_002690562.1| PREDICTED: TRIM5/cyclophilin A fusion protei... 183 2e-46
Alignment gi|XP_002690561.1| PREDICTED: TRIM5/cyclophilin A fusion protei... 183 2e-46
Alignment gi|XP_001252498.1| PREDICTED: TRIM5/cyclophilin A fusion protei... 183 2e-46
Alignment gi|NP_001001597.1| peptidyl-prolyl cis-trans isomerase F, mitoc... 179 3e-45
Alignment gi|XP_002686758.1| PREDICTED: TRIM5/CypA fusion protein-like [B... 175 6e-44
Alignment gi|XP_868977.1| PREDICTED: TRIM5/CypA fusion protein-like isofo... 175 6e-44
Alignment gi|NP_776578.1| peptidyl-prolyl cis-trans isomerase D [Bos taur... 168 7e-42
Alignment gi|NP_001091630.1| peptidyl-prolyl cis-trans isomerase E [Bos t... 167 1e-41
>ref|NP_776577.1| peptidyl-prolyl cis-trans isomerase B [Bos taurus].
Length = 208
Score = 342 bits (876), Expect = 4e-94
Identities = 169/184 (91%), Positives = 171/184 (92%)
Frame = +2
Query: 158 ADEKKKGPKVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKNSK 337
ADEKKKGPKVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYK+SK
Sbjct: 25 ADEKKKGPKVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSK 84
Query: 338 FHRVIKDFMIQXXXXXXXXXXXXKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQF 517
FHRVIKDFMIQ KSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQF
Sbjct: 85 FHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQF 144
Query: 518 FITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDGRDKPLKDVTIADCGKIEVEKPFA 697
FITTVKTAWLDGKHV FGKVLEGM+VVRKVESTKTDGRDKPLKDVTIADCGKIEVEKPFA
Sbjct: 145 FITTVKTAWLDGKHVGFGKVLEGMDVVRKVESTKTDGRDKPLKDVTIADCGKIEVEKPFA 204
Query: 698 IAKE 709
IAKE
Sbjct: 205 IAKE 208
>ref|NP_001070378.1| peptidyl-prolyl cis-trans isomerase C [Bos taurus].
Length = 212
Score = 260 bits (664), Expect = 1e-69
Identities = 123/178 (69%), Positives = 140/178 (78%)
Frame = +2
Query: 167 KKKGPKVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHR 346
+K+GP VT KV+FD+RIGD+D+GR+VIGLFGK VPKTV+NFVALATGEKG+GYK SKFHR
Sbjct: 30 RKRGPSVTAKVFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGEKGYGYKGSKFHR 89
Query: 347 VIKDFMIQXXXXXXXXXXXXKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFIT 526
VIKDFMIQ SIYGE FPDENFKLKHYG GWVSMANAG DTNGSQFFIT
Sbjct: 90 VIKDFMIQGGDFTRGDGTGGISIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFIT 149
Query: 527 TVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDGRDKPLKDVTIADCGKIEVEKPFAI 700
K WLDGKHVVFGKVL+GM VV +E TDG D+P D +I + GKI+V+ PF +
Sbjct: 150 LTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPFTDCSIVNSGKIDVKTPFVV 207
>ref|XP_002690562.1| PREDICTED: TRIM5/cyclophilin A fusion protein-like [Bos taurus].
Length = 164
Score = 183 bits (464), Expect = 2e-46
Identities = 95/164 (57%), Positives = 110/164 (67%)
Frame = +2
Query: 185 VTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFM 364
V V+FD+ + E +GRV LF VPKT +NF AL+TGEKGFGYK S FHR+I FM
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 365 IQXXXXXXXXXXXXKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAW 544
Q KSIYGE+F DENF LKH GPG +SMANAG +TNGSQFFI T KT W
Sbjct: 62 CQGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
Query: 545 LDGKHVVFGKVLEGMEVVRKVESTKTDGRDKPLKDVTIADCGKI 676
LDGKHVVFGKV EGM V +E + K K++TIADCG+I
Sbjct: 122 LDGKHVVFGKVKEGMNTVEAMERFGS-RNGKTSKNITIADCGQI 164
>ref|XP_002690561.1| PREDICTED: TRIM5/cyclophilin A fusion protein-like [Bos taurus].
Length = 164
Score = 183 bits (464), Expect = 2e-46
Identities = 95/164 (57%), Positives = 110/164 (67%)
Frame = +2
Query: 185 VTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFM 364
V V+FD+ + E +GRV LF VPKT +NF AL+TGEKGFGYK S FHR+I FM
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 365 IQXXXXXXXXXXXXKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAW 544
Q KSIYGE+F DENF LKH GPG +SMANAG +TNGSQFFI T KT W
Sbjct: 62 CQGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
Query: 545 LDGKHVVFGKVLEGMEVVRKVESTKTDGRDKPLKDVTIADCGKI 676
LDGKHVVFGKV EGM V +E + K K++TIADCG+I
Sbjct: 122 LDGKHVVFGKVKEGMNTVEAMERFGS-RNGKTSKNITIADCGQI 164
>ref|XP_001252498.1| PREDICTED: TRIM5/cyclophilin A fusion protein-like isoform 1 [Bos
taurus].
Length = 164
Score = 183 bits (464), Expect = 2e-46
Identities = 95/164 (57%), Positives = 110/164 (67%)
Frame = +2
Query: 185 VTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFM 364
V V+FD+ + E +GRV LF VPKT +NF AL+TGEKGFGYK S FHR+I FM
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 365 IQXXXXXXXXXXXXKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAW 544
Q KSIYGE+F DENF LKH GPG +SMANAG +TNGSQFFI T KT W
Sbjct: 62 CQGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
Query: 545 LDGKHVVFGKVLEGMEVVRKVESTKTDGRDKPLKDVTIADCGKI 676
LDGKHVVFGKV EGM V +E + K K++TIADCG+I
Sbjct: 122 LDGKHVVFGKVKEGMNTVEAMERFGS-RNGKTSKNITIADCGQI 164
>ref|NP_001001597.1| peptidyl-prolyl cis-trans isomerase F, mitochondrial precursor [Bos
taurus].
Length = 209
Score = 179 bits (454), Expect = 3e-45
Identities = 89/139 (64%), Positives = 100/139 (71%)
Frame = +2
Query: 197 VYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQXX 376
VY D+ + +GRVV+ L VPKT +NF AL TGEKGFGYK S FHRVI FM Q
Sbjct: 49 VYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAG 108
Query: 377 XXXXXXXXXXKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGK 556
KSIYG RFPDENFKLKH GPG +SMANAG +TNGSQFFI T+KT WLDGK
Sbjct: 109 DFTNHNGTGGKSIYGSRFPDENFKLKHEGPGVLSMANAGPNTNGSQFFICTIKTDWLDGK 168
Query: 557 HVVFGKVLEGMEVVRKVES 613
HVVFG V EGM+VV+K+ES
Sbjct: 169 HVVFGHVKEGMDVVKKIES 187
>ref|XP_002686758.1| PREDICTED: TRIM5/CypA fusion protein-like [Bos taurus].
Length = 164
Score = 175 bits (443), Expect = 6e-44
Identities = 92/164 (56%), Positives = 107/164 (65%)
Frame = +2
Query: 185 VTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFM 364
V V+F++ + E +GRV LF VPKT +N AL TGEKGFGYK S FHR+I FM
Sbjct: 2 VNPTVFFNIAVDGEPLGRVSFELFADKVPKTAENVHALRTGEKGFGYKGSCFHRIIPGFM 61
Query: 365 IQXXXXXXXXXXXXKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAW 544
Q KSIYGE+F DENF LKH GPG +S ANAG +TNGSQFF T KT W
Sbjct: 62 CQGGDSTCHNGTGGKSIYGEKFDDENFILKHTGPGILSTANAGPNTNGSQFFTCTAKTEW 121
Query: 545 LDGKHVVFGKVLEGMEVVRKVESTKTDGRDKPLKDVTIADCGKI 676
LDGKHVVFGKV EGM+VV +E + K K +TIADCG+I
Sbjct: 122 LDGKHVVFGKVKEGMDVVEAMERFGS-RNGKTSKKITIADCGQI 164
>ref|XP_868977.1| PREDICTED: TRIM5/CypA fusion protein-like isoform 1 [Bos taurus].
Length = 164
Score = 175 bits (443), Expect = 6e-44
Identities = 92/164 (56%), Positives = 107/164 (65%)
Frame = +2
Query: 185 VTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFM 364
V V+F++ + E +GRV LF VPKT +N AL TGEKGFGYK S FHR+I FM
Sbjct: 2 VNPTVFFNIAVDGEPLGRVSFELFADKVPKTAENVHALRTGEKGFGYKGSCFHRIIPGFM 61
Query: 365 IQXXXXXXXXXXXXKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAW 544
Q KSIYGE+F DENF LKH GPG +S ANAG +TNGSQFF T KT W
Sbjct: 62 CQGGDSTCHNGTGGKSIYGEKFDDENFILKHTGPGILSTANAGPNTNGSQFFTCTAKTEW 121
Query: 545 LDGKHVVFGKVLEGMEVVRKVESTKTDGRDKPLKDVTIADCGKI 676
LDGKHVVFGKV EGM+VV +E + K K +TIADCG+I
Sbjct: 122 LDGKHVVFGKVKEGMDVVEAMERFGS-RNGKTSKKITIADCGQI 164
>ref|NP_776578.1| peptidyl-prolyl cis-trans isomerase D [Bos taurus].
Length = 370
Score = 168 bits (425), Expect = 7e-42
Identities = 88/170 (51%), Positives = 113/170 (66%), Gaps = 8/170 (4%)
Frame = +2
Query: 194 KVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFG--------YKNSKFHRV 349
+V+FD+ IG E +GR+V+ LF VPKT +NF AL TGEKG G +K FHR+
Sbjct: 17 RVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRI 76
Query: 350 IKDFMIQXXXXXXXXXXXXKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITT 529
IK FMIQ +SIYGE+F DENF KH G +SMANAG +TNGSQFFITT
Sbjct: 77 IKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITT 136
Query: 530 VKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDGRDKPLKDVTIADCGKIE 679
V T LDGKHVVFG+V++GM V + +E+ + G +KP K IA+CG+++
Sbjct: 137 VPTPHLDGKHVVFGQVIKGMGVAKILENVEVKG-EKPAKLCVIAECGELK 185
>ref|NP_001091630.1| peptidyl-prolyl cis-trans isomerase E [Bos taurus].
Length = 301
Score = 167 bits (424), Expect = 1e-41
Identities = 83/161 (51%), Positives = 111/161 (68%), Gaps = 1/161 (0%)
Frame = +2
Query: 194 KVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQX 373
+VY D++IG++ GR+ + L VP T +NF L T EKGFG+K S FHR+I FM Q
Sbjct: 141 QVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQG 200
Query: 374 XXXXXXXXXXXKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDG 553
KSIYG++F DENF LKH GPG +SMAN+G +TNGSQFF+T KT WLDG
Sbjct: 201 GDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDG 260
Query: 554 KHVVFGKVLEGMEVVRKVEST-KTDGRDKPLKDVTIADCGK 673
KHVVFG++ +G++V+R++E+ DG KP + V I+DCG+
Sbjct: 261 KHVVFGEITDGLDVLRQIEAQGSKDG--KPKQKVIISDCGE 299
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,435,102
Number of extensions: 1063342
Number of successful extensions: 4838
Number of sequences better than 1.0e-05: 37
Number of HSP's gapped: 4787
Number of HSP's successfully gapped: 37
Length of query: 321
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 219
Effective length of database: 14,306,398
Effective search space: 3133101162
Effective search space used: 3133101162
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012699
(963 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852389.1| PREDICTED: similar to peptidylprolyl isomerase ... 352 4e-97
Alignment gi|XP_535510.2| PREDICTED: similar to Peptidyl-prolyl cis-trans... 320 1e-87
Alignment gi|XP_538601.2| PREDICTED: similar to Peptidyl-prolyl cis-trans... 246 3e-65
Alignment gi|XP_865596.1| PREDICTED: similar to Peptidyl-prolyl cis-trans... 209 3e-54
Alignment gi|XP_533873.1| PREDICTED: similar to peptidylprolyl isomerase ... 175 7e-44
Alignment gi|XP_856959.1| PREDICTED: similar to Peptidyl-prolyl cis-trans... 174 9e-44
Alignment gi|XP_853114.1| PREDICTED: similar to Peptidyl-prolyl cis-trans... 171 7e-43
Alignment gi|XP_532723.2| PREDICTED: similar to peptidylprolyl isomerase ... 170 2e-42
Alignment gi|XP_848739.1| PREDICTED: similar to Peptidyl-prolyl cis-trans... 170 2e-42
Alignment gi|XP_848420.1| PREDICTED: similar to peptidylprolyl isomerase ... 168 8e-42
>ref|XP_852389.1| PREDICTED: similar to peptidylprolyl isomerase B precursor isoform
2 [Canis familiaris].
Length = 216
Score = 352 bits (902), Expect = 4e-97
Identities = 179/216 (82%), Positives = 180/216 (83%)
Frame = +2
Query: 62 MLRFLERNMKXXXXXXXXXXXXXXXXXXXXXTADEKKKGPKVTVKVYFDLRIGDEDIGRV 241
MLR ERNMK TADEKKKGPKVTVKVYFDLRIGDEDIGRV
Sbjct: 1 MLRLSERNMKVLFAAALVVGSVFFLLLPGPSTADEKKKGPKVTVKVYFDLRIGDEDIGRV 60
Query: 242 VIGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQXXXXXXXXXXXXKSIYG 421
VIGLFGKTVPKTVDNFVALATGEKGFGYK+SKFHRVIKDFMIQ KSIYG
Sbjct: 61 VIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGTGGKSIYG 120
Query: 422 ERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVR 601
ERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVR
Sbjct: 121 ERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVR 180
Query: 602 KVESTKTDGRDKPLKDVTIADCGKIEVEKPFAIAKE 709
KVESTKTD RDKPLKDVTIADCGKIEVEKPFAIAKE
Sbjct: 181 KVESTKTDSRDKPLKDVTIADCGKIEVEKPFAIAKE 216
>ref|XP_535510.2| PREDICTED: similar to Peptidyl-prolyl cis-trans isomerase B
precursor (PPIase) (Rotamase) (Cyclophilin B)
(S-cyclophilin) (SCYLP) (CYP-S1) isoform 1 [Canis
familiaris].
Length = 173
Score = 320 bits (820), Expect = 1e-87
Identities = 158/173 (91%), Positives = 160/173 (92%)
Frame = +2
Query: 191 VKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQ 370
+KVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYK+SKFHRVIKDFMIQ
Sbjct: 1 MKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQ 60
Query: 371 XXXXXXXXXXXXKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLD 550
KSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLD
Sbjct: 61 GGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLD 120
Query: 551 GKHVVFGKVLEGMEVVRKVESTKTDGRDKPLKDVTIADCGKIEVEKPFAIAKE 709
GKHVVFGKVLEGMEVVRKVESTKTD RDKPLKDVTIADCGKIEVEKPFAIAKE
Sbjct: 121 GKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVTIADCGKIEVEKPFAIAKE 173
>ref|XP_538601.2| PREDICTED: similar to Peptidyl-prolyl cis-trans isomerase C
(PPIase) (Rotamase) (Cyclophilin C) [Canis familiaris].
Length = 274
Score = 246 bits (627), Expect = 3e-65
Identities = 117/173 (67%), Positives = 135/173 (78%)
Frame = +2
Query: 182 KVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDF 361
K+ +V+FD+RIGD+D+GR+VIGLFGK VPKTV+NFVALATGEKG+ YK S+FHRVIKDF
Sbjct: 97 KLLGRVFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGEKGYSYKGSRFHRVIKDF 156
Query: 362 MIQXXXXXXXXXXXXKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTA 541
MIQ SIYGE FPDENFKLKHYG GWVSMANAG DTNGSQFFIT K
Sbjct: 157 MIQGGDITSGDGTGGISIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPT 216
Query: 542 WLDGKHVVFGKVLEGMEVVRKVESTKTDGRDKPLKDVTIADCGKIEVEKPFAI 700
WLDGKHVVFGKVL+GM VV +E TDG D+PL D +I + GKI+V+ PF +
Sbjct: 217 WLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCSIVNSGKIDVKTPFVV 269
>ref|XP_865596.1| PREDICTED: similar to Peptidyl-prolyl cis-trans isomerase B
precursor (PPIase) (Rotamase) (Cyclophilin B)
(S-cyclophilin) (SCYLP) (CYP-S1) isoform 3 [Canis
familiaris].
Length = 116
Score = 209 bits (532), Expect = 3e-54
Identities = 103/116 (88%), Positives = 103/116 (88%)
Frame = +2
Query: 362 MIQXXXXXXXXXXXXKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTA 541
MIQ KSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTA
Sbjct: 1 MIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTA 60
Query: 542 WLDGKHVVFGKVLEGMEVVRKVESTKTDGRDKPLKDVTIADCGKIEVEKPFAIAKE 709
WLDGKHVVFGKVLEGMEVVRKVESTKTD RDKPLKDVTIADCGKIEVEKPFAIAKE
Sbjct: 61 WLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVTIADCGKIEVEKPFAIAKE 116
>ref|XP_533873.1| PREDICTED: similar to peptidylprolyl isomerase A isoform 1 [Canis
familiaris].
Length = 161
Score = 175 bits (443), Expect = 7e-44
Identities = 90/157 (57%), Positives = 106/157 (67%)
Frame = +2
Query: 206 DLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQXXXXX 385
D+ + E +G V LF VPKT +NF AL+TGEKGFGYK S FHR+I FM Q
Sbjct: 6 DITVDCEPLGPVSFELFADRVPKTAENFCALSTGEKGFGYKGSCFHRIIPGFMCQGGDFT 65
Query: 386 XXXXXXXKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVV 565
KSIYGE+F D+NF LKH GPG +SMANAG +TNGSQFFI T KT WLDGKHVV
Sbjct: 66 RHNGTGGKSIYGEKFDDKNFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVV 125
Query: 566 FGKVLEGMEVVRKVESTKTDGRDKPLKDVTIADCGKI 676
FGKV EGM +V +E++ K K +TIADCG+I
Sbjct: 126 FGKVKEGMNIVEAMEAS-GPRNGKTSKKITIADCGQI 161
>ref|XP_856959.1| PREDICTED: similar to Peptidyl-prolyl cis-trans isomerase E (PPIase
E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) isoform
3 [Canis familiaris].
Length = 288
Score = 174 bits (442), Expect = 9e-44
Identities = 91/173 (52%), Positives = 118/173 (68%), Gaps = 2/173 (1%)
Frame = +2
Query: 161 DEKKKGPKV-TVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKNSK 337
+E + PKV T +VY D++IG++ GR+ + L VP T +NF L T EKGFG+K S
Sbjct: 116 EEGSEPPKVETQEVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSS 175
Query: 338 FHRVIKDFMIQXXXXXXXXXXXXKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQF 517
FHR+I FM Q KSIYG++F DENF LKH GPG +SMAN+G +TNGSQF
Sbjct: 176 FHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQF 235
Query: 518 FITTVKTAWLDGKHVVFGKVLEGMEVVRKVEST-KTDGRDKPLKDVTIADCGK 673
F+T KT WLDGKHVVFG+V EG++V+R++E+ DG KP + V IADCG+
Sbjct: 236 FLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDG--KPKQKVIIADCGE 286
>ref|XP_853114.1| PREDICTED: similar to Peptidyl-prolyl cis-trans isomerase,
mitochondrial precursor (PPIase) (Rotamase) (Cyclophilin
F) [Canis familiaris].
Length = 152
Score = 171 bits (434), Expect = 7e-43
Identities = 87/137 (63%), Positives = 97/137 (70%)
Frame = +2
Query: 266 VPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQXXXXXXXXXXXXKSIYGERFPDENF 445
VPKT +NF AL TGEKGFGYK S FHRVI FM Q KSIYG RFPDENF
Sbjct: 16 VPKTAENFRALCTGEKGFGYKGSSFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENF 75
Query: 446 KLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTD 625
LKH GPG +SMANAG +TNGSQFFI TVKT WLDGKHVVFG V EGM+VV+K+ES +
Sbjct: 76 TLKHVGPGVLSMANAGPNTNGSQFFICTVKTDWLDGKHVVFGHVKEGMDVVKKIESFGSR 135
Query: 626 GRDKPLKDVTIADCGKI 676
K K + I DCG++
Sbjct: 136 S-GKTSKKIIITDCGQL 151
>ref|XP_532723.2| PREDICTED: similar to peptidylprolyl isomerase A isoform 1 [Canis
familiaris].
Length = 239
Score = 170 bits (431), Expect = 2e-42
Identities = 88/146 (60%), Positives = 101/146 (69%)
Frame = +2
Query: 239 VVIGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQXXXXXXXXXXXXKSIY 418
+V+ LF VPKT +NF AL+TGEKGFGYK S FHR+I FM Q KSIY
Sbjct: 95 LVLQLFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIY 154
Query: 419 GERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVV 598
GE+F DENF LKH GPG +SMANAG +TNGSQFFI T KT WLDGKHVVFGKV EGM +V
Sbjct: 155 GEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIV 214
Query: 599 RKVESTKTDGRDKPLKDVTIADCGKI 676
+E + K K +TIADCG+I
Sbjct: 215 EAMERFGS-RNGKTSKKITIADCGQI 239
>ref|XP_848739.1| PREDICTED: similar to Peptidyl-prolyl cis-trans isomerase E (PPIase
E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) isoform
2 [Canis familiaris].
Length = 301
Score = 170 bits (431), Expect = 2e-42
Identities = 86/161 (53%), Positives = 111/161 (68%), Gaps = 1/161 (0%)
Frame = +2
Query: 194 KVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQX 373
+VY D++IG++ GR+ + L VP T +NF L T EKGFG+K S FHR+I FM Q
Sbjct: 141 QVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQG 200
Query: 374 XXXXXXXXXXXKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDG 553
KSIYG++F DENF LKH GPG +SMAN+G +TNGSQFF+T KT WLDG
Sbjct: 201 GDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDG 260
Query: 554 KHVVFGKVLEGMEVVRKVEST-KTDGRDKPLKDVTIADCGK 673
KHVVFG+V EG++V+R++E+ DG KP + V IADCG+
Sbjct: 261 KHVVFGEVTEGLDVLRQIEAQGSKDG--KPKQKVIIADCGE 299
>ref|XP_848420.1| PREDICTED: similar to peptidylprolyl isomerase A isoform 1 [Canis
familiaris].
Length = 164
Score = 168 bits (425), Expect = 8e-42
Identities = 88/164 (53%), Positives = 106/164 (64%)
Frame = +2
Query: 185 VTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFM 364
V ++FD+ + E +GRV LF VPKT +N AL+ GEKGF Y+ S FHR+I FM
Sbjct: 2 VNPTMFFDIAMDGEPLGRVSFELFADKVPKTAENSRALSMGEKGFSYEGSGFHRIIPGFM 61
Query: 365 IQXXXXXXXXXXXXKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAW 544
Q KSIYGE+F D+NF LKH GPG +SMANAG +TN SQFFI T KT W
Sbjct: 62 CQGGDFTRHNGTGGKSIYGEKFDDKNFILKHTGPGILSMANAGPNTNRSQFFICTAKTEW 121
Query: 545 LDGKHVVFGKVLEGMEVVRKVESTKTDGRDKPLKDVTIADCGKI 676
LDGKHVVFGKV EGM +V +E + K K +TIADCG+I
Sbjct: 122 LDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQI 164
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,998,130
Number of extensions: 1076368
Number of successful extensions: 5044
Number of sequences better than 1.0e-05: 40
Number of HSP's gapped: 4982
Number of HSP's successfully gapped: 40
Length of query: 321
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 218
Effective length of database: 15,440,896
Effective search space: 3366115328
Effective search space used: 3366115328
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012699
(963 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001927082.3| PREDICTED: peptidyl-prolyl cis-trans isomera... 283 1e-76
Alignment gi|XP_003129089.2| PREDICTED: peptidyl-prolyl cis-trans isomera... 259 2e-69
Alignment gi|XP_003354302.1| PREDICTED: peptidyl-prolyl cis-trans isomera... 259 2e-69
Alignment gi|XP_003359306.1| PREDICTED: peptidyl-prolyl cis-trans isomera... 187 7e-48
Alignment gi|XP_001929518.1| PREDICTED: peptidyl-prolyl cis-trans isomera... 187 7e-48
Alignment gi|NP_999518.1| peptidyl-prolyl cis-trans isomerase A [Sus scro... 183 1e-46
Alignment gi|XP_003127865.1| PREDICTED: peptidyl-prolyl cis-trans isomera... 171 6e-43
Alignment gi|XP_003129052.1| PREDICTED: peptidyl-prolyl cis-trans isomera... 168 5e-42
Alignment gi|XP_003362121.1| PREDICTED: peptidyl-prolyl cis-trans isomera... 167 6e-42
Alignment gi|XP_003128148.1| PREDICTED: peptidyl-prolyl cis-trans isomera... 162 2e-40
>ref|XP_001927082.3| PREDICTED: peptidyl-prolyl cis-trans isomerase B [Sus scrofa].
Length = 243
Score = 283 bits (723), Expect = 1e-76
Identities = 143/176 (81%), Positives = 143/176 (81%)
Frame = +2
Query: 62 MLRFLERNMKXXXXXXXXXXXXXXXXXXXXXTADEKKKGPKVTVKVYFDLRIGDEDIGRV 241
MLRFLERNMK TADEKKKGPKVTVKVYFDLRIGDEDIGRV
Sbjct: 1 MLRFLERNMKVLFVAAVVVGSVLFLLLPGPSTADEKKKGPKVTVKVYFDLRIGDEDIGRV 60
Query: 242 VIGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQXXXXXXXXXXXXKSIYG 421
VIGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQ KSIYG
Sbjct: 61 VIGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYG 120
Query: 422 ERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGM 589
ERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGM
Sbjct: 121 ERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGM 176
>ref|XP_003129089.2| PREDICTED: peptidyl-prolyl cis-trans isomerase C-like [Sus scrofa].
Length = 211
Score = 259 bits (661), Expect = 2e-69
Identities = 121/178 (67%), Positives = 141/178 (79%)
Frame = +2
Query: 167 KKKGPKVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHR 346
+K+GP VT KV+FD+RIGD+D+GR+VIGLFGK VPKTV+NF+ALATGE+G+GYK SKFHR
Sbjct: 29 RKRGPSVTAKVFFDVRIGDKDVGRIVIGLFGKVVPKTVENFIALATGERGYGYKGSKFHR 88
Query: 347 VIKDFMIQXXXXXXXXXXXXKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFIT 526
VIKDFMIQ SIYGE FPDENFKLKHYG GWVSMANAG DTNGSQFFIT
Sbjct: 89 VIKDFMIQGGDFTHGDGTGGISIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFIT 148
Query: 527 TVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDGRDKPLKDVTIADCGKIEVEKPFAI 700
K WLDGKHVVFGKV++GM VV +E TDG D+PL D +I + GKI+V+ PF +
Sbjct: 149 LTKPTWLDGKHVVFGKVIDGMTVVHSIELQATDGHDRPLTDCSIINSGKIDVKTPFVV 206
>ref|XP_003354302.1| PREDICTED: peptidyl-prolyl cis-trans isomerase C-like [Sus scrofa].
Length = 211
Score = 259 bits (661), Expect = 2e-69
Identities = 121/178 (67%), Positives = 141/178 (79%)
Frame = +2
Query: 167 KKKGPKVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHR 346
+K+GP VT KV+FD+RIGD+D+GR+VIGLFGK VPKTV+NF+ALATGE+G+GYK SKFHR
Sbjct: 29 RKRGPSVTAKVFFDVRIGDKDVGRIVIGLFGKVVPKTVENFIALATGERGYGYKGSKFHR 88
Query: 347 VIKDFMIQXXXXXXXXXXXXKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFIT 526
VIKDFMIQ SIYGE FPDENFKLKHYG GWVSMANAG DTNGSQFFIT
Sbjct: 89 VIKDFMIQGGDFTHGDGTGGISIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFIT 148
Query: 527 TVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDGRDKPLKDVTIADCGKIEVEKPFAI 700
K WLDGKHVVFGKV++GM VV +E TDG D+PL D +I + GKI+V+ PF +
Sbjct: 149 LTKPTWLDGKHVVFGKVIDGMTVVHSIELQATDGHDRPLTDCSIINSGKIDVKTPFVV 206
>ref|XP_003359306.1| PREDICTED: peptidyl-prolyl cis-trans isomerase F,
mitochondrial-like [Sus scrofa].
Length = 207
Score = 187 bits (475), Expect = 7e-48
Identities = 95/160 (59%), Positives = 110/160 (68%)
Frame = +2
Query: 197 VYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQXX 376
VY D+ + +GRVV+ L VPKT +NF AL TGEKGFGYK S FHRVI FM Q
Sbjct: 48 VYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAG 107
Query: 377 XXXXXXXXXXKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGK 556
KSIYG RFPDENFKLKH GPG +SMANAG +TNGSQFFI T+KT WLDGK
Sbjct: 108 DFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGK 167
Query: 557 HVVFGKVLEGMEVVRKVESTKTDGRDKPLKDVTIADCGKI 676
HVVFG V EGM+VV+K+ES + K K + I DCG++
Sbjct: 168 HVVFGHVKEGMDVVKKIESFGSKS-GKTSKKIVITDCGQL 206
>ref|XP_001929518.1| PREDICTED: peptidyl-prolyl cis-trans isomerase F, mitochondrial
[Sus scrofa].
Length = 207
Score = 187 bits (475), Expect = 7e-48
Identities = 95/160 (59%), Positives = 110/160 (68%)
Frame = +2
Query: 197 VYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQXX 376
VY D+ + +GRVV+ L VPKT +NF AL TGEKGFGYK S FHRVI FM Q
Sbjct: 48 VYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAG 107
Query: 377 XXXXXXXXXXKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGK 556
KSIYG RFPDENFKLKH GPG +SMANAG +TNGSQFFI T+KT WLDGK
Sbjct: 108 DFTNHNGTGGKSIYGSRFPDENFKLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGK 167
Query: 557 HVVFGKVLEGMEVVRKVESTKTDGRDKPLKDVTIADCGKI 676
HVVFG V EGM+VV+K+ES + K K + I DCG++
Sbjct: 168 HVVFGHVKEGMDVVKKIESFGSKS-GKTSKKIVITDCGQL 206
>ref|NP_999518.1| peptidyl-prolyl cis-trans isomerase A [Sus scrofa].
Length = 164
Score = 183 bits (465), Expect = 1e-46
Identities = 95/164 (57%), Positives = 110/164 (67%)
Frame = +2
Query: 185 VTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFM 364
V V+FD+ + E +GRV LF VPKT +NF AL+TGEKGFGYK S FHR+I FM
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 365 IQXXXXXXXXXXXXKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAW 544
Q KSIYGE+F DENF LKH GPG +SMANAG +TNGSQFFI T KT W
Sbjct: 62 CQGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
Query: 545 LDGKHVVFGKVLEGMEVVRKVESTKTDGRDKPLKDVTIADCGKI 676
LDGKHVVFGKV EGM +V +E + K K +TIADCG+I
Sbjct: 122 LDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQI 164
>ref|XP_003127865.1| PREDICTED: peptidyl-prolyl cis-trans isomerase E-like isoform 1
[Sus scrofa].
Length = 301
Score = 171 bits (433), Expect = 6e-43
Identities = 89/174 (51%), Positives = 116/174 (66%), Gaps = 1/174 (0%)
Frame = +2
Query: 155 TADEKKKGPKVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKNS 334
TA + + P+V Y D++IG++ GR+ I L VP T +NF L T EKGFG+K S
Sbjct: 132 TAKKARSNPQV----YMDIKIGNKPAGRIQILLRSDVVPMTAENFRCLCTHEKGFGFKGS 187
Query: 335 KFHRVIKDFMIQXXXXXXXXXXXXKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQ 514
FHR+I FM Q KSIYG++F DENF LKH GPG +SMAN+G +TNGSQ
Sbjct: 188 SFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQ 247
Query: 515 FFITTVKTAWLDGKHVVFGKVLEGMEVVRKVEST-KTDGRDKPLKDVTIADCGK 673
FF+T KT WLDGKHVVFG+V EG++V+R++E+ DG KP + V I+DCG+
Sbjct: 248 FFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDG--KPKQKVIISDCGE 299
>ref|XP_003129052.1| PREDICTED: peptidyl-prolyl cis-trans isomerase D-like [Sus scrofa].
Length = 370
Score = 168 bits (425), Expect = 5e-42
Identities = 89/170 (52%), Positives = 113/170 (66%), Gaps = 8/170 (4%)
Frame = +2
Query: 194 KVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFG--------YKNSKFHRV 349
+V+FD+ IG E +GR+V+ LF VPKT +NF AL TGEKG G +K FHR+
Sbjct: 17 RVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRI 76
Query: 350 IKDFMIQXXXXXXXXXXXXKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITT 529
IK FMIQ +SIYGE+F DENF KH G +SMANAG +TNGSQFFITT
Sbjct: 77 IKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGCNTNGSQFFITT 136
Query: 530 VKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDGRDKPLKDVTIADCGKIE 679
V T LDGKHVVFG+V++GM V R +E+ + G +KP K IA+CG+++
Sbjct: 137 VPTPHLDGKHVVFGQVIKGMGVARILENVEVKG-EKPAKLCVIAECGELK 185
>ref|XP_003362121.1| PREDICTED: peptidyl-prolyl cis-trans isomerase F,
mitochondrial-like [Sus scrofa].
Length = 248
Score = 167 bits (424), Expect = 6e-42
Identities = 87/160 (54%), Positives = 105/160 (65%)
Frame = +2
Query: 197 VYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQXX 376
VY D+ + +GRVV+ L VPKT +NF AL TGEKGFGYK S FHRVI FM Q
Sbjct: 89 VYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAG 148
Query: 377 XXXXXXXXXXKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGK 556
KSIYG RFPDE+ ++ G +SMANAG +TNGSQFFI T+KT WLDGK
Sbjct: 149 DFTNHNGTGGKSIYGSRFPDESLVIQFAFAGVLSMANAGPNTNGSQFFICTIKTDWLDGK 208
Query: 557 HVVFGKVLEGMEVVRKVESTKTDGRDKPLKDVTIADCGKI 676
HVVFG V EGM+VV+K+ES + K K + I DCG++
Sbjct: 209 HVVFGHVKEGMDVVKKIESFGSKS-GKTSKKIVITDCGQL 247
>ref|XP_003128148.1| PREDICTED: peptidyl-prolyl cis-trans isomerase H-like isoform 3
[Sus scrofa].
Length = 177
Score = 162 bits (411), Expect = 2e-40
Identities = 83/165 (50%), Positives = 104/165 (63%), Gaps = 5/165 (3%)
Frame = +2
Query: 197 VYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGE-----KGFGYKNSKFHRVIKDF 361
V+FD+ IG +++GR+ I LF VPKT +NF TGE GYK S FHRVIKDF
Sbjct: 13 VFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDF 72
Query: 362 MIQXXXXXXXXXXXXKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTA 541
MIQ SIY F D NFKL+H PG +SMAN+G TNG QFFIT K
Sbjct: 73 MIQGGDFVNGDGTGVASIYRGPFADXNFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCD 132
Query: 542 WLDGKHVVFGKVLEGMEVVRKVESTKTDGRDKPLKDVTIADCGKI 676
WLDGKHVVFGK+++G+ V+RK+E+ T +KP V I+ CG++
Sbjct: 133 WLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,774,317
Number of extensions: 721605
Number of successful extensions: 3151
Number of sequences better than 1.0e-05: 28
Number of HSP's gapped: 3121
Number of HSP's successfully gapped: 28
Length of query: 321
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 222
Effective length of database: 8,879,129
Effective search space: 1971166638
Effective search space used: 1971166638
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012699
(963 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035279.2| peptidyl-prolyl cis-trans isomerase B precursor... 333 2e-91
Alignment gi|NP_032934.1| peptidyl-prolyl cis-trans isomerase C [Mus musc... 258 6e-69
Alignment gi|NP_598845.1| peptidyl-prolyl cis-trans isomerase F, mitochon... 183 2e-46
Alignment gi|NP_032933.1| peptidyl-prolyl cis-trans isomerase A [Mus musc... 182 3e-46
Alignment gi|XP_001002180.2| PREDICTED: peptidyl-prolyl cis-trans isomera... 176 2e-44
Alignment gi|XP_003086687.1| PREDICTED: peptidyl-prolyl cis-trans isomera... 176 2e-44
Alignment gi|NP_062362.1| peptidyl-prolyl cis-trans isomerase E [Mus musc... 171 8e-43
Alignment gi|NP_080628.1| peptidyl-prolyl cis-trans isomerase D [Mus musc... 168 5e-42
Alignment gi|NP_001103599.1| peptidyl-prolyl cis-trans isomerase H isofor... 165 6e-41
Alignment gi|NP_082953.1| peptidyl-prolyl cis-trans isomerase H isoform 1... 165 6e-41
>ref|NP_035279.2| peptidyl-prolyl cis-trans isomerase B precursor [Mus musculus].
Length = 216
Score = 333 bits (853), Expect = 2e-91
Identities = 168/216 (77%), Positives = 174/216 (80%)
Frame = +2
Query: 62 MLRFLERNMKXXXXXXXXXXXXXXXXXXXXXTADEKKKGPKVTVKVYFDLRIGDEDIGRV 241
MLR ERNMK A++KKKGPKVTVKVYFDL+IGDE +GRV
Sbjct: 1 MLRLSERNMKVLFAAALIVGSVVFLLLPGPSVANDKKKGPKVTVKVYFDLQIGDESVGRV 60
Query: 242 VIGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQXXXXXXXXXXXXKSIYG 421
V GLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQ KSIYG
Sbjct: 61 VFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYG 120
Query: 422 ERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVR 601
ERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKT+WLDGKHVVFGKVLEGM+VVR
Sbjct: 121 ERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVR 180
Query: 602 KVESTKTDGRDKPLKDVTIADCGKIEVEKPFAIAKE 709
KVESTKTD RDKPLKDV I D GKIEVEKPFAIAKE
Sbjct: 181 KVESTKTDSRDKPLKDVIIVDSGKIEVEKPFAIAKE 216
>ref|NP_032934.1| peptidyl-prolyl cis-trans isomerase C [Mus musculus].
Length = 212
Score = 258 bits (658), Expect = 6e-69
Identities = 123/178 (69%), Positives = 139/178 (78%)
Frame = +2
Query: 167 KKKGPKVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHR 346
+K+GP VT KV+FD+RIGD+D+GR+VIGLFG VPKTV+NFVALATGEKG+GYK S FHR
Sbjct: 30 RKRGPSVTDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHR 89
Query: 347 VIKDFMIQXXXXXXXXXXXXKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFIT 526
VIKDFMIQ SIYGE FPDENFKLKHYG GWVSMANAG DTNGSQFFIT
Sbjct: 90 VIKDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFIT 149
Query: 527 TVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDGRDKPLKDVTIADCGKIEVEKPFAI 700
K WLDGKHVVFGKVL+GM VV +E TDG D+PL D TI + GKI+V+ PF +
Sbjct: 150 LTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGKIDVKTPFVV 207
>ref|NP_598845.1| peptidyl-prolyl cis-trans isomerase F, mitochondrial precursor [Mus
musculus].
Length = 206
Score = 183 bits (464), Expect = 2e-46
Identities = 93/160 (58%), Positives = 109/160 (68%)
Frame = +2
Query: 197 VYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQXX 376
VY D+ + +GRVV+ L VPKT +NF AL TGEKGFGYK S FHRVI FM Q
Sbjct: 47 VYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPAFMCQAG 106
Query: 377 XXXXXXXXXXKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGK 556
+SIYG RFPDENF LKH GPG +SMANAG +TNGSQFFI T+KT WLDGK
Sbjct: 107 DFTNHNGTGGRSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGK 166
Query: 557 HVVFGKVLEGMEVVRKVESTKTDGRDKPLKDVTIADCGKI 676
HVVFG V EGM+VV+K+ES + K K + I DCG++
Sbjct: 167 HVVFGHVKEGMDVVKKIESFGSKS-GKTSKKIVITDCGQL 205
>ref|NP_032933.1| peptidyl-prolyl cis-trans isomerase A [Mus musculus].
Length = 164
Score = 182 bits (463), Expect = 3e-46
Identities = 93/164 (56%), Positives = 110/164 (67%)
Frame = +2
Query: 185 VTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFM 364
V V+FD+ DE +GRV LF VPKT +NF AL+TGEKGFGYK S FHR+I FM
Sbjct: 2 VNPTVFFDITADDEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSSFHRIIPGFM 61
Query: 365 IQXXXXXXXXXXXXKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAW 544
Q +SIYGE+F DENF LKH GPG +SMANAG +TNGSQFFI T KT W
Sbjct: 62 CQGGDFTRHNGTGGRSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
Query: 545 LDGKHVVFGKVLEGMEVVRKVESTKTDGRDKPLKDVTIADCGKI 676
LDGKHVVFGKV EGM +V +E + K K +TI+DCG++
Sbjct: 122 LDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITISDCGQL 164
>ref|XP_001002180.2| PREDICTED: peptidyl-prolyl cis-trans isomerase A-like [Mus
musculus].
Length = 164
Score = 176 bits (447), Expect = 2e-44
Identities = 91/164 (55%), Positives = 107/164 (65%)
Frame = +2
Query: 185 VTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFM 364
V V+FD+ DE +GRV LF VPKT +NF AL+TGEKGFGYK S FHR+I FM
Sbjct: 2 VNPTVFFDITADDEPLGRVSFELFADKVPKTAENFQALSTGEKGFGYKGSSFHRIIPGFM 61
Query: 365 IQXXXXXXXXXXXXKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAW 544
Q +SIYGE+F DENF LKH GPG +SMANAG +TN SQFFI T KT W
Sbjct: 62 CQGGDFTRHNGTGGRSIYGEKFEDENFILKHTGPGILSMANAGPNTNSSQFFICTAKTEW 121
Query: 545 LDGKHVVFGKVLEGMEVVRKVESTKTDGRDKPLKDVTIADCGKI 676
LDGKHVVF KV EGM V +E + K K +TI+DCG++
Sbjct: 122 LDGKHVVFEKVKEGMNTVEAMEHFGS-RNGKTSKKITISDCGQL 164
>ref|XP_003086687.1| PREDICTED: peptidyl-prolyl cis-trans isomerase A-like [Mus
musculus].
Length = 164
Score = 176 bits (447), Expect = 2e-44
Identities = 91/164 (55%), Positives = 107/164 (65%)
Frame = +2
Query: 185 VTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFM 364
V V+FD+ DE +GRV LF VPKT +NF AL+TGEKGFGYK S FHR+I FM
Sbjct: 2 VNPTVFFDITADDEPLGRVSFELFADKVPKTAENFQALSTGEKGFGYKGSSFHRIIPGFM 61
Query: 365 IQXXXXXXXXXXXXKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAW 544
Q +SIYGE+F DENF LKH GPG +SMANAG +TN SQFFI T KT W
Sbjct: 62 CQGGDFTRHNGTGGRSIYGEKFEDENFILKHTGPGILSMANAGPNTNSSQFFICTAKTEW 121
Query: 545 LDGKHVVFGKVLEGMEVVRKVESTKTDGRDKPLKDVTIADCGKI 676
LDGKHVVF KV EGM V +E + K K +TI+DCG++
Sbjct: 122 LDGKHVVFEKVKEGMNTVEAMEHFGS-RNGKTSKKITISDCGQL 164
>ref|NP_062362.1| peptidyl-prolyl cis-trans isomerase E [Mus musculus].
Length = 301
Score = 171 bits (433), Expect = 8e-43
Identities = 89/174 (51%), Positives = 116/174 (66%), Gaps = 1/174 (0%)
Frame = +2
Query: 155 TADEKKKGPKVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKNS 334
TA + + P+V Y D++IG++ GR+ + L VP T +NF L T EKGFG+K S
Sbjct: 132 TAKKARSNPQV----YMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGS 187
Query: 335 KFHRVIKDFMIQXXXXXXXXXXXXKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQ 514
FHR+I FM Q KSIYG++F DENF LKH GPG +SMAN+G +TNGSQ
Sbjct: 188 SFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQ 247
Query: 515 FFITTVKTAWLDGKHVVFGKVLEGMEVVRKVEST-KTDGRDKPLKDVTIADCGK 673
FF+T KT WLDGKHVVFG+V EG++V+R++E+ DG KP + V IADCG+
Sbjct: 248 FFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDG--KPKQKVMIADCGE 299
>ref|NP_080628.1| peptidyl-prolyl cis-trans isomerase D [Mus musculus].
Length = 370
Score = 168 bits (426), Expect = 5e-42
Identities = 88/170 (51%), Positives = 114/170 (67%), Gaps = 8/170 (4%)
Frame = +2
Query: 194 KVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFG--------YKNSKFHRV 349
+V+FD+ IG E +GR+V+ LF VPKT +NF AL TGEKG G +K FHR+
Sbjct: 17 RVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGTGSTTGKPLHFKGCPFHRI 76
Query: 350 IKDFMIQXXXXXXXXXXXXKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITT 529
IK FMIQ +SIYGE+F DENF KH G +SMANAG +TNGSQFFITT
Sbjct: 77 IKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFITT 136
Query: 530 VKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDGRDKPLKDVTIADCGKIE 679
V T LDGKHVVFG+V++G+ V R +E+ + +G +KP K IA+CG+++
Sbjct: 137 VPTPHLDGKHVVFGQVIKGLGVARTLENVEVNG-EKPAKLCVIAECGELK 185
>ref|NP_001103599.1| peptidyl-prolyl cis-trans isomerase H isoform 1 [Mus musculus].
Length = 177
Score = 165 bits (417), Expect = 6e-41
Identities = 84/165 (50%), Positives = 105/165 (63%), Gaps = 5/165 (3%)
Frame = +2
Query: 197 VYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGE-----KGFGYKNSKFHRVIKDF 361
V+FD+ IG +++GR+ I LF VPKT +NF TGE GYK S FHRVIKDF
Sbjct: 13 VFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDF 72
Query: 362 MIQXXXXXXXXXXXXKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTA 541
MIQ SIY F DENFKL+H PG +SMAN+G TNG QFFIT K
Sbjct: 73 MIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCD 132
Query: 542 WLDGKHVVFGKVLEGMEVVRKVESTKTDGRDKPLKDVTIADCGKI 676
WLDGKHVVFGK+++G+ V+RK+E+ T +KP V I+ CG++
Sbjct: 133 WLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177
>ref|NP_082953.1| peptidyl-prolyl cis-trans isomerase H isoform 1 [Mus musculus].
Length = 177
Score = 165 bits (417), Expect = 6e-41
Identities = 84/165 (50%), Positives = 105/165 (63%), Gaps = 5/165 (3%)
Frame = +2
Query: 197 VYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGE-----KGFGYKNSKFHRVIKDF 361
V+FD+ IG +++GR+ I LF VPKT +NF TGE GYK S FHRVIKDF
Sbjct: 13 VFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDF 72
Query: 362 MIQXXXXXXXXXXXXKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTA 541
MIQ SIY F DENFKL+H PG +SMAN+G TNG QFFIT K
Sbjct: 73 MIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCD 132
Query: 542 WLDGKHVVFGKVLEGMEVVRKVESTKTDGRDKPLKDVTIADCGKI 676
WLDGKHVVFGK+++G+ V+RK+E+ T +KP V I+ CG++
Sbjct: 133 WLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,227,493
Number of extensions: 864079
Number of successful extensions: 3681
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 3638
Number of HSP's successfully gapped: 24
Length of query: 321
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 220
Effective length of database: 12,583,923
Effective search space: 2768463060
Effective search space used: 2768463060
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012699
(963 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000933.1| peptidyl-prolyl cis-trans isomerase B precursor... 347 9e-96
Alignment gi|NP_000934.1| peptidyl-prolyl cis-trans isomerase C [Homo sap... 259 3e-69
Alignment gi|NP_066953.1| peptidyl-prolyl cis-trans isomerase A [Homo sap... 184 8e-47
Alignment gi|NP_005720.1| peptidyl-prolyl cis-trans isomerase F, mitochon... 184 1e-46
Alignment gi|NP_006103.1| peptidyl-prolyl cis-trans isomerase E isoform 1... 170 2e-42
Alignment gi|NP_005029.1| peptidyl-prolyl cis-trans isomerase D [Homo sap... 168 6e-42
Alignment gi|NP_006338.1| peptidyl-prolyl cis-trans isomerase H [Homo sap... 165 7e-41
Alignment gi|NP_004783.2| peptidyl-prolyl cis-trans isomerase G [Homo sap... 162 6e-40
Alignment gi|NP_001116540.1| peptidylprolyl cis-trans isomerase A-like 4G... 160 2e-39
Alignment gi|NP_001181936.1| peptidyl-prolyl cis-trans isomerase E isofor... 159 4e-39
>ref|NP_000933.1| peptidyl-prolyl cis-trans isomerase B precursor [Homo sapiens].
Length = 216
Score = 347 bits (890), Expect = 9e-96
Identities = 175/216 (81%), Positives = 177/216 (81%)
Frame = +2
Query: 62 MLRFLERNMKXXXXXXXXXXXXXXXXXXXXXTADEKKKGPKVTVKVYFDLRIGDEDIGRV 241
MLR ERNMK ADEKKKGPKVTVKVYFDLRIGDED+GRV
Sbjct: 1 MLRLSERNMKVLLAAALIAGSVFFLLLPGPSAADEKKKGPKVTVKVYFDLRIGDEDVGRV 60
Query: 242 VIGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQXXXXXXXXXXXXKSIYG 421
+ GLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQ KSIYG
Sbjct: 61 IFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYG 120
Query: 422 ERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVR 601
ERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVR
Sbjct: 121 ERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVR 180
Query: 602 KVESTKTDGRDKPLKDVTIADCGKIEVEKPFAIAKE 709
KVESTKTD RDKPLKDV IADCGKIEVEKPFAIAKE
Sbjct: 181 KVESTKTDSRDKPLKDVIIADCGKIEVEKPFAIAKE 216
>ref|NP_000934.1| peptidyl-prolyl cis-trans isomerase C [Homo sapiens].
Length = 212
Score = 259 bits (661), Expect = 3e-69
Identities = 122/178 (68%), Positives = 141/178 (79%)
Frame = +2
Query: 167 KKKGPKVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHR 346
+K+GP VT KV+FD+RIGD+D+GR+VIGLFGK VPKTV+NFVALATGEKG+GYK SKFHR
Sbjct: 30 RKRGPSVTAKVFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGEKGYGYKGSKFHR 89
Query: 347 VIKDFMIQXXXXXXXXXXXXKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFIT 526
VIKDFMIQ SIYGE FPDENFKLKHYG GWVSMANAG DTNGSQFFIT
Sbjct: 90 VIKDFMIQGGDITTGDGTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFIT 149
Query: 527 TVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDGRDKPLKDVTIADCGKIEVEKPFAI 700
K WLDGKHVVFGKV++GM VV +E TDG D+PL + +I + GKI+V+ PF +
Sbjct: 150 LTKPTWLDGKHVVFGKVIDGMTVVHSIELQATDGHDRPLTNCSIINSGKIDVKTPFVV 207
>ref|NP_066953.1| peptidyl-prolyl cis-trans isomerase A [Homo sapiens].
Length = 165
Score = 184 bits (468), Expect = 8e-47
Identities = 95/165 (57%), Positives = 111/165 (67%)
Frame = +2
Query: 185 VTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFM 364
V V+FD+ + E +GRV LF VPKT +NF AL+TGEKGFGYK S FHR+I FM
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 365 IQXXXXXXXXXXXXKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAW 544
Q KSIYGE+F DENF LKH GPG +SMANAG +TNGSQFFI T KT W
Sbjct: 62 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
Query: 545 LDGKHVVFGKVLEGMEVVRKVESTKTDGRDKPLKDVTIADCGKIE 679
LDGKHVVFGKV EGM +V +E + K K +TIADCG++E
Sbjct: 122 LDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITIADCGQLE 165
>ref|NP_005720.1| peptidyl-prolyl cis-trans isomerase F, mitochondrial precursor
[Homo sapiens].
Length = 207
Score = 184 bits (466), Expect = 1e-46
Identities = 93/160 (58%), Positives = 109/160 (68%)
Frame = +2
Query: 197 VYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQXX 376
VY D+ + +GRVV+ L VPKT +NF AL TGEKGFGYK S FHRVI FM Q
Sbjct: 48 VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAG 107
Query: 377 XXXXXXXXXXKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGK 556
KSIYG RFPDENF LKH GPG +SMANAG +TNGSQFFI T+KT WLDGK
Sbjct: 108 DFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGK 167
Query: 557 HVVFGKVLEGMEVVRKVESTKTDGRDKPLKDVTIADCGKI 676
HVVFG V EGM+VV+K+ES + + K + I DCG++
Sbjct: 168 HVVFGHVKEGMDVVKKIESFGSKS-GRTSKKIVITDCGQL 206
>ref|NP_006103.1| peptidyl-prolyl cis-trans isomerase E isoform 1 [Homo sapiens].
Length = 301
Score = 170 bits (431), Expect = 2e-42
Identities = 86/161 (53%), Positives = 111/161 (68%), Gaps = 1/161 (0%)
Frame = +2
Query: 194 KVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQX 373
+VY D++IG++ GR+ + L VP T +NF L T EKGFG+K S FHR+I FM Q
Sbjct: 141 QVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQG 200
Query: 374 XXXXXXXXXXXKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDG 553
KSIYG++F DENF LKH GPG +SMAN+G +TNGSQFF+T KT WLDG
Sbjct: 201 GDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDG 260
Query: 554 KHVVFGKVLEGMEVVRKVEST-KTDGRDKPLKDVTIADCGK 673
KHVVFG+V EG++V+R++E+ DG KP + V IADCG+
Sbjct: 261 KHVVFGEVTEGLDVLRQIEAQGSKDG--KPKQKVIIADCGE 299
>ref|NP_005029.1| peptidyl-prolyl cis-trans isomerase D [Homo sapiens].
Length = 370
Score = 168 bits (426), Expect = 6e-42
Identities = 88/170 (51%), Positives = 114/170 (67%), Gaps = 8/170 (4%)
Frame = +2
Query: 194 KVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKNSK--------FHRV 349
+V+FD+ IG E +GR+V+ LF VPKT +NF AL TGEKG G+ K FHR+
Sbjct: 17 RVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGHTTGKPLHFKGCPFHRI 76
Query: 350 IKDFMIQXXXXXXXXXXXXKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITT 529
IK FMIQ +SIYGE+F DENF KH G +SMANAG++TNGSQFFITT
Sbjct: 77 IKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGRNTNGSQFFITT 136
Query: 530 VKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDGRDKPLKDVTIADCGKIE 679
V T LDGKHVVFG+V++G+ V R +E+ + G +KP K IA+CG+++
Sbjct: 137 VPTPHLDGKHVVFGQVIKGIGVARILENVEVKG-EKPAKLCVIAECGELK 185
>ref|NP_006338.1| peptidyl-prolyl cis-trans isomerase H [Homo sapiens].
Length = 177
Score = 165 bits (417), Expect = 7e-41
Identities = 84/165 (50%), Positives = 105/165 (63%), Gaps = 5/165 (3%)
Frame = +2
Query: 197 VYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGE-----KGFGYKNSKFHRVIKDF 361
V+FD+ IG +++GR+ I LF VPKT +NF TGE GYK S FHRVIKDF
Sbjct: 13 VFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDF 72
Query: 362 MIQXXXXXXXXXXXXKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTA 541
MIQ SIY F DENFKL+H PG +SMAN+G TNG QFFIT K
Sbjct: 73 MIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCD 132
Query: 542 WLDGKHVVFGKVLEGMEVVRKVESTKTDGRDKPLKDVTIADCGKI 676
WLDGKHVVFGK+++G+ V+RK+E+ T +KP V I+ CG++
Sbjct: 133 WLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177
>ref|NP_004783.2| peptidyl-prolyl cis-trans isomerase G [Homo sapiens].
Length = 754
Score = 162 bits (409), Expect = 6e-40
Identities = 84/169 (49%), Positives = 105/169 (62%), Gaps = 8/169 (4%)
Frame = +2
Query: 194 KVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFG--------YKNSKFHRV 349
+ +FD+ I ++ GRVV LF PKT +NF L TGEKG G YK+ FHRV
Sbjct: 9 RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRV 68
Query: 350 IKDFMIQXXXXXXXXXXXXKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITT 529
+KDFM+Q +SIYG F DE+F +KH +SMAN GKDTNGSQFFITT
Sbjct: 69 VKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITT 128
Query: 530 VKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDGRDKPLKDVTIADCGKI 676
T LDG HVVFG+V+ G EVVR++E+ KTD KP +V I CG++
Sbjct: 129 KPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 177
>ref|NP_001116540.1| peptidylprolyl cis-trans isomerase A-like 4G [Homo sapiens].
Length = 164
Score = 160 bits (405), Expect = 2e-39
Identities = 82/159 (51%), Positives = 101/159 (63%)
Frame = +2
Query: 197 VYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQXX 376
++FD+ + + +GR+ I F +PKT +NF AL+TGEKGF YK S FHR+I FM Q
Sbjct: 6 IFFDITVDGKPLGRISIKQFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGFMCQGG 65
Query: 377 XXXXXXXXXXKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGK 556
KSIYGE+F DEN KH G G +SMANAG +TNGSQFFI T KT WLDGK
Sbjct: 66 DFTHPNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICTAKTEWLDGK 125
Query: 557 HVVFGKVLEGMEVVRKVESTKTDGRDKPLKDVTIADCGK 673
HV FGKV E + +V +E K K +TIADCG+
Sbjct: 126 HVAFGKVKERVNIVEAMEHFGY-RNSKTSKKITIADCGQ 163
>ref|NP_001181936.1| peptidyl-prolyl cis-trans isomerase E isoform 4 [Homo sapiens].
Length = 314
Score = 159 bits (402), Expect = 4e-39
Identities = 76/139 (54%), Positives = 98/139 (70%)
Frame = +2
Query: 194 KVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQX 373
+VY D++IG++ GR+ + L VP T +NF L T EKGFG+K S FHR+I FM Q
Sbjct: 141 QVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQG 200
Query: 374 XXXXXXXXXXXKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDG 553
KSIYG++F DENF LKH GPG +SMAN+G +TNGSQFF+T KT WLDG
Sbjct: 201 GDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDG 260
Query: 554 KHVVFGKVLEGMEVVRKVE 610
KHVVFG+V EG++V+R++E
Sbjct: 261 KHVVFGEVTEGLDVLRQIE 279
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,118,415
Number of extensions: 1043302
Number of successful extensions: 4782
Number of sequences better than 1.0e-05: 38
Number of HSP's gapped: 4734
Number of HSP's successfully gapped: 38
Length of query: 321
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 218
Effective length of database: 14,901,872
Effective search space: 3248608096
Effective search space used: 3248608096
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012699
(963 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896357.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 680 0.0
Sscrofa_Chr01 385 e-104
Sscrofa_Chr08 58 9e-06
Sscrofa_Chr02 58 9e-06
>gb|GL896357.1| Sus scrofa unplaced genomic scaffold chrU_scaffold705
Length = 37839
Score = 680 bits (343), Expect = 0.0
Identities = 343/343 (100%)
Strand = Plus / Plus
Query: 589 ggaggtagttcgcaaggtggagagcaccaagacagatggtcgggacaagcccctgaagga 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35514 ggaggtagttcgcaaggtggagagcaccaagacagatggtcgggacaagcccctgaagga 35573
Query: 649 tgtgacaatcgcagactgtggcaagatcgaggtggagaagccctttgccatcgccaagga 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35574 tgtgacaatcgcagactgtggcaagatcgaggtggagaagccctttgccatcgccaagga 35633
Query: 709 gtaggacccccgggcacctcttccctttgagcgactgtctgtgcagccctgttgccctcc 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35634 gtaggacccccgggcacctcttccctttgagcgactgtctgtgcagccctgttgccctcc 35693
Query: 769 tggaggtgaagacagtgctgggcgccacagggctccatgccgctctggcccgagtgccag 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35694 tggaggtgaagacagtgctgggcgccacagggctccatgccgctctggcccgagtgccag 35753
Query: 829 catccgtcggagcggacccctcccctcacattccacggccggagggcccggttttgtaac 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35754 catccgtcggagcggacccctcccctcacattccacggccggagggcccggttttgtaac 35813
Query: 889 aaactcctgtcaacactgaccaattaaaaaaaggtggtttttt 931
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35814 aaactcctgtcaacactgaccaattaaaaaaaggtggtttttt 35856
Score = 230 bits (116), Expect = 1e-57
Identities = 116/116 (100%)
Strand = Plus / Plus
Query: 195 aggtttactttgacctgcgaattggagatgaagatataggccgggtggtcatcggtctct 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30277 aggtttactttgacctgcgaattggagatgaagatataggccgggtggtcatcggtctct 30336
Query: 255 ttggaaagacagttccaaaaacggtggataattttgtggccttggctacaggagag 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30337 ttggaaagacagttccaaaaacggtggataattttgtggccttggctacaggagag 30392
Score = 218 bits (110), Expect = 4e-54
Identities = 113/114 (99%)
Strand = Plus / Plus
Query: 1 cgccgctccgccccgccccttccggcctgagcagccctgtagcgctcgcttttcccggtg 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 29220 cgccgctccgccccgccccttccggcctcagcagccctgtagcgctcgcttttcccggtg 29279
Query: 61 gatgctgcgcttcttggagcggaacatgaaggtgctcttcgtcgccgccgtagt 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29280 gatgctgcgcttcttggagcggaacatgaaggtgctcttcgtcgccgccgtagt 29333
Score = 184 bits (93), Expect = 6e-44
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 403 aggtaagagcatctatggtgaacgctttcccgacgagaacttcaagctgaaacactatgg 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34743 aggtaagagcatctatggtgaacgctttcccgacgagaacttcaagctgaaacactatgg 34802
Query: 463 gcccggctgggtgagcatggccaacgcgggcaa 495
|||||||||||||||||||||||||||||||||
Sbjct: 34803 gcccggctgggtgagcatggccaacgcgggcaa 34835
Score = 172 bits (87), Expect = 2e-40
Identities = 100/104 (96%), Gaps = 4/104 (3%)
Strand = Plus / Plus
Query: 309 agaaagggtttggctacaagaacagcaaattccatcgtgtcatcaaggacttcatgatcc 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31601 agaaagggtttggctacaagaacagcaaattccatcgtgtcatcaaggacttcatgatcc 31660
Query: 369 a----gggtggagacttcacccggggagatggcactggaggtaa 408
| |||||||||||||||||||||||||||||||||||||||
Sbjct: 31661 agggngggtggagacttcacccggggagatggcactggaggtaa 31704
Score = 143 bits (72), Expect = 2e-31
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 519 tcatcacaacggtcaagacagcctggttagatggcaagcatgtggtgttcggcaaagttc 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34936 tcatcacaacggtcaagacagcctggttagatggcaagcatgtggtgttcggcaaagttc 34995
Query: 579 tcgagggcatgg 590
||||||||||||
Sbjct: 34996 tcgagggcatgg 35007
Score = 129 bits (65), Expect = 3e-27
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 134 ctgctgttgcctggaccttccacggcagatgagaagaagaagggacccaaagtcactgtc 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29434 ctgctgttgcctggaccttccacggcagatgagaagaagaagggacccaaagtcactgtc 29493
Query: 194 aaggt 198
|||||
Sbjct: 29494 aaggt 29498
>Sscrofa_Chr01
|| Length = 315321322
Score = 385 bits (194), Expect = e-104
Identities = 197/198 (99%)
Strand = Plus / Plus
Query: 1 cgccgctccgccccgccccttccggcctgagcagccctgtagcgctcgcttttcccggtg 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 118800888 cgccgctccgccccgccccttccggcctcagcagccctgtagcgctcgcttttcccggtg 118800947
Query: 61 gatgctgcgcttcttggagcggaacatgaaggtgctcttcgtcgccgccgtagtcgtggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118800948 gatgctgcgcttcttggagcggaacatgaaggtgctcttcgtcgccgccgtagtcgtggg 118801007
Query: 121 ctcggtcctcttcctgctgttgcctggaccttccacggcagatgagaagaagaagggacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118801008 ctcggtcctcttcctgctgttgcctggaccttccacggcagatgagaagaagaagggacc 118801067
Query: 181 caaagtcactgtcaaggt 198
||||||||||||||||||
Sbjct: 118801068 caaagtcactgtcaaggt 118801085
Score = 373 bits (188), Expect = e-100
Identities = 188/188 (100%)
Strand = Plus / Plus
Query: 403 aggtaagagcatctatggtgaacgctttcccgacgagaacttcaagctgaaacactatgg 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118806312 aggtaagagcatctatggtgaacgctttcccgacgagaacttcaagctgaaacactatgg 118806371
Query: 463 gcccggctgggtgagcatggccaacgcgggcaaagacaccaatggctcccagttcttcat 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118806372 gcccggctgggtgagcatggccaacgcgggcaaagacaccaatggctcccagttcttcat 118806431
Query: 523 cacaacggtcaagacagcctggttagatggcaagcatgtggtgttcggcaaagttctcga 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118806432 cacaacggtcaagacagcctggttagatggcaagcatgtggtgttcggcaaagttctcga 118806491
Query: 583 gggcatgg 590
||||||||
Sbjct: 118806492 gggcatgg 118806499
Score = 230 bits (116), Expect = 1e-57
Identities = 116/116 (100%)
Strand = Plus / Plus
Query: 195 aggtttactttgacctgcgaattggagatgaagatataggccgggtggtcatcggtctct 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118801788 aggtttactttgacctgcgaattggagatgaagatataggccgggtggtcatcggtctct 118801847
Query: 255 ttggaaagacagttccaaaaacggtggataattttgtggccttggctacaggagag 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118801848 ttggaaagacagttccaaaaacggtggataattttgtggccttggctacaggagag 118801903
Score = 198 bits (100), Expect = 4e-48
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 309 agaaagggtttggctacaagaacagcaaattccatcgtgtcatcaaggacttcatgatcc 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118803274 agaaagggtttggctacaagaacagcaaattccatcgtgtcatcaaggacttcatgatcc 118803333
Query: 369 agggtggagacttcacccggggagatggcactggaggtaa 408
||||||||||||||||||||||||||||||||||||||||
Sbjct: 118803334 agggtggagacttcacccggggagatggcactggaggtaa 118803373
>Sscrofa_Chr08
|| Length = 148491826
Score = 58.0 bits (29), Expect = 9e-06
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 332 agcaaattccatcgtgtcatcaaggacttcatgatccagggtggagacttcacccgggga 391
||||| || ||||||||||| || || |||||||| || || ||||||||||||| |||
Sbjct: 64167459 agcaagtttcatcgtgtcattaaagatttcatgattcaaggaggagacttcacccatgga 64167518
Query: 392 gatggcactggaggtaa 408
|| |||||||| |||||
Sbjct: 64167519 gacggcactggtggtaa 64167535
>Sscrofa_Chr02
|| Length = 162569375
Score = 58.0 bits (29), Expect = 9e-06
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 332 agcaaattccatcgtgtcatcaaggacttcatgatccagggtggagacttcacccgggga 391
||||| || ||||||||||| || || |||||||| || || ||||||||||||| |||
Sbjct: 131697713 agcaagtttcatcgtgtcattaaagatttcatgattcaaggaggagacttcacccatgga 131697654
Query: 392 gatggcactggaggtaa 408
|| |||||||| |||||
Sbjct: 131697653 gacggcactggtggtaa 131697637
Score = 58.0 bits (29), Expect = 9e-06
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 332 agcaaattccatcgtgtcatcaaggacttcatgatccagggtggagacttcacccgggga 391
||||| || ||||||||||| || || |||||||| || || ||||||||||||| |||
Sbjct: 131755931 agcaagtttcatcgtgtcattaaagatttcatgattcaaggaggagacttcacccatgga 131755872
Query: 392 gatggcactggaggtaa 408
|| |||||||| |||||
Sbjct: 131755871 gacggcactggtggtaa 131755855
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,923,001
Number of extensions: 147
Number of successful extensions: 147
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 14
Length of query: 963
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 942
Effective length of database: 2,808,413,156
Effective search space: 2645525192952
Effective search space used: 2645525192952
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)