Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012701
(2347 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092647.1| transcription factor 25 [Bos taurus]. 1111 0.0
>ref|NP_001092647.1| transcription factor 25 [Bos taurus].
Length = 676
Score = 1111 bits (2874), Expect = 0.0
Identities = 555/674 (82%), Positives = 587/674 (87%)
Frame = +2
Query: 188 PLGPGALQFVLHDDDDAEEECPQQXXXXXXXXXXXKEGVRVNNRFELINIEDLDEGPVVN 367
PLGPGALQFVLHDDDD EEECP++ KEGVRVNNRFELINIEDLDE P VN
Sbjct: 18 PLGPGALQFVLHDDDDVEEECPKRGPGGRRPRGAGKEGVRVNNRFELINIEDLDEAPGVN 77
Query: 368 GGRTDCPLTDTVASGSKRRPQGGRTATKRDGNVADRAVPPEQSSASGXXXXXXXXXXXXX 547
G RTDC L D V SG+KRR Q G + + R GN AD AVP EQS+
Sbjct: 78 GERTDCLLVDAVVSGNKRRAQSGHSESTRGGNAADTAVPSEQSNTCSKLRKKKRKQKNKK 137
Query: 548 XAAGETSEDGLEDIGRILERIEDGSGXXXXXXXXXSSRKHVLYVEHRHLNPDTELKRYFG 727
A GETS++GLEDI RILERIED SG S++KHVLYVEHRHLNPDTELKRYFG
Sbjct: 138 NA-GETSQNGLEDIDRILERIEDASGASRPGPPPLSTKKHVLYVEHRHLNPDTELKRYFG 196
Query: 728 ARAVLGEQRPRQRQRVYPKSSWLTTPKSTWPRYSKPGLSMRLLESKKGRSCFAFEHNEEY 907
ARAVLGEQRPRQRQR+YPK +WLTTPKSTWPRY+KPGLSMRLLES+KGRS FAFEH+EEY
Sbjct: 197 ARAVLGEQRPRQRQRMYPKCTWLTTPKSTWPRYTKPGLSMRLLESRKGRSVFAFEHSEEY 256
Query: 908 QQTQHKFLAAVESMEPNNIVVLLQTSPYHVDSLLQLSDACRFQEDQEMARDLVERALHSM 1087
QQTQHKFLAAVESMEPNNIVVLLQ+SPYHVDSLLQLSDACRFQEDQE ARDLVERAL+SM
Sbjct: 257 QQTQHKFLAAVESMEPNNIVVLLQSSPYHVDSLLQLSDACRFQEDQETARDLVERALYSM 316
Query: 1088 ECAFHPLFSLTSGTCRLDYRRPENRSFYLALYKQMTFLEKRGCPRTALEYCKLILSLEPD 1267
ECAFHPLFSLTSGTCRLDYRRPENRSFYLALYKQM+FLEKRGCPRTALEYCKLILSLEPD
Sbjct: 317 ECAFHPLFSLTSGTCRLDYRRPENRSFYLALYKQMSFLEKRGCPRTALEYCKLILSLEPD 376
Query: 1268 EDPLCMLLLVDHLALRARSYEYLIRLFQEWEAHRNLSQLPNFAFSVPLAYFLLSQQAELP 1447
EDPLCMLLL+DHLALRARSYEYLIRLF+EWEAHRNLSQLPNFAFSVPLAYFLLSQQA+L
Sbjct: 377 EDPLCMLLLIDHLALRARSYEYLIRLFEEWEAHRNLSQLPNFAFSVPLAYFLLSQQADLS 436
Query: 1448 EQELSSAREQASVLVQQALLMFPGVLMPLLEYCSVRPDAAVASHRFFGPDAEISQPPALS 1627
EQE+SSARE+A V +QQAL MFPGVLMPLLEYCSVRPD VA+H FFGPDAEISQPPALS
Sbjct: 437 EQEMSSAREEACVRIQQALTMFPGVLMPLLEYCSVRPDTTVATHHFFGPDAEISQPPALS 496
Query: 1628 QLVSLYLGRSHFLWKEPATMSWLEENVRKVLQAVDAGDPAVEACESRRKVLYQRAPRNIH 1807
QLVSLYLGRSHFLWKEPATMSWLEENV KVLQ VDAGDPAVEACESRRKVLYQRAPRNIH
Sbjct: 497 QLVSLYLGRSHFLWKEPATMSWLEENVHKVLQVVDAGDPAVEACESRRKVLYQRAPRNIH 556
Query: 1808 RHVVLSEIKEAVAALPPDVTTQSVLGFDPLPPLDTIYSYVRPERLSPVSHGNTIALFFRS 1987
RHVVLSEIKEAVAALPPDVTTQSVLGFDPLPPLDTIYSYVRPERLSP+SHGNTIALFFRS
Sbjct: 557 RHVVLSEIKEAVAALPPDVTTQSVLGFDPLPPLDTIYSYVRPERLSPISHGNTIALFFRS 616
Query: 1988 LLPNYTMEVXXXXXXXXXXWAQGERPDDGGAGGLNPDQGLNRLMLAVRDMMANFHFRDLE 2167
LLPNYT+E GERP+DGG GGL+ DQGLNRLMLAVRDMMANFHF DLE
Sbjct: 617 LLPNYTVE--------------GERPEDGGPGGLHRDQGLNRLMLAVRDMMANFHFHDLE 662
Query: 2168 VPPEDNPEGDGEWD 2209
V P+++PEGDGEWD
Sbjct: 663 VLPDEHPEGDGEWD 676
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 83,829,015
Number of extensions: 2397912
Number of successful extensions: 13360
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 13277
Number of HSP's successfully gapped: 1
Length of query: 782
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 672
Effective length of database: 14,041,694
Effective search space: 9436018368
Effective search space used: 9436018368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012701
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012701
(2347 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849916.1| PREDICTED: similar to FKSG26 protein isoform 1 ... 1125 0.0
Alignment gi|XP_860118.1| PREDICTED: similar to FKSG26 protein isoform 3 ... 692 0.0
Alignment gi|XP_860085.1| PREDICTED: similar to KIAA1049 protein isoform ... 217 5e-56
>ref|XP_849916.1| PREDICTED: similar to FKSG26 protein isoform 1 [Canis familiaris].
Length = 677
Score = 1125 bits (2909), Expect = 0.0
Identities = 561/674 (83%), Positives = 595/674 (88%)
Frame = +2
Query: 188 PLGPGALQFVLHDDDDAEEECPQQXXXXXXXXXXXKEGVRVNNRFELINIEDLDEGPVVN 367
PLGPGALQFVLHDDDDAEEE P++ KEGV VNNRFEL+NIEDL+EGPV+N
Sbjct: 18 PLGPGALQFVLHDDDDAEEEGPKRGPGGRRSRGAGKEGVCVNNRFELLNIEDLEEGPVLN 77
Query: 368 GGRTDCPLTDTVASGSKRRPQGGRTATKRDGNVADRAVPPEQSSASGXXXXXXXXXXXXX 547
G R+DC LTD V SG+KRR Q G TK+ G AD+AVPPEQS+ SG
Sbjct: 78 GERSDCLLTDAVVSGNKRRSQSGSADTKKAGEAADKAVPPEQSNISGKLRKKKKKQKNKK 137
Query: 548 XAAGETSEDGLEDIGRILERIEDGSGXXXXXXXXXSSRKHVLYVEHRHLNPDTELKRYFG 727
GE E+GLEDI RILERIED SG SS+KHVLYVEHRHLNPDTELKRYFG
Sbjct: 138 NTTGEILENGLEDIDRILERIEDSSGLNRPGPPPLSSKKHVLYVEHRHLNPDTELKRYFG 197
Query: 728 ARAVLGEQRPRQRQRVYPKSSWLTTPKSTWPRYSKPGLSMRLLESKKGRSCFAFEHNEEY 907
ARAVLGEQRPRQRQRVYPK +WLTTPKSTWPRY+KPGLSMRLLESKKG S FAFEH+EEY
Sbjct: 198 ARAVLGEQRPRQRQRVYPKCTWLTTPKSTWPRYTKPGLSMRLLESKKGLSSFAFEHSEEY 257
Query: 908 QQTQHKFLAAVESMEPNNIVVLLQTSPYHVDSLLQLSDACRFQEDQEMARDLVERALHSM 1087
QQTQHKFLAAVESMEPNNIVVLLQTSPYHVDSLLQLSDACRFQEDQEMARDLVERAL+SM
Sbjct: 258 QQTQHKFLAAVESMEPNNIVVLLQTSPYHVDSLLQLSDACRFQEDQEMARDLVERALYSM 317
Query: 1088 ECAFHPLFSLTSGTCRLDYRRPENRSFYLALYKQMTFLEKRGCPRTALEYCKLILSLEPD 1267
ECAFHPLFSLTSGTCRLDYRRPENRSFYLALYKQM+FLEKRGCPRTALE+CKLILSLEPD
Sbjct: 318 ECAFHPLFSLTSGTCRLDYRRPENRSFYLALYKQMSFLEKRGCPRTALEFCKLILSLEPD 377
Query: 1268 EDPLCMLLLVDHLALRARSYEYLIRLFQEWEAHRNLSQLPNFAFSVPLAYFLLSQQAELP 1447
EDPLCMLLL+DHLALRAR+YEYLIRLFQEWEAHRNLSQLPNFAFSVPLAYFLLSQQA+LP
Sbjct: 378 EDPLCMLLLIDHLALRARNYEYLIRLFQEWEAHRNLSQLPNFAFSVPLAYFLLSQQADLP 437
Query: 1448 EQELSSAREQASVLVQQALLMFPGVLMPLLEYCSVRPDAAVASHRFFGPDAEISQPPALS 1627
EQEL+SAREQAS+L++QAL MFPGVL+PLLEYCSVRPDAAVA+HRFFGPDAEISQPPALS
Sbjct: 438 EQELNSAREQASLLIRQALTMFPGVLLPLLEYCSVRPDAAVATHRFFGPDAEISQPPALS 497
Query: 1628 QLVSLYLGRSHFLWKEPATMSWLEENVRKVLQAVDAGDPAVEACESRRKVLYQRAPRNIH 1807
QLVSLYLGRSHFLWKEPATMSWLEENVR+VLQAVD+GDPAVEACESRRKVLYQRAPRNIH
Sbjct: 498 QLVSLYLGRSHFLWKEPATMSWLEENVREVLQAVDSGDPAVEACESRRKVLYQRAPRNIH 557
Query: 1808 RHVVLSEIKEAVAALPPDVTTQSVLGFDPLPPLDTIYSYVRPERLSPVSHGNTIALFFRS 1987
RHVVLSE+KEAVAALPPDVTTQSV+GFDPLPPLDTIYSYVRPERLSPVSHGNTIALFFRS
Sbjct: 558 RHVVLSEVKEAVAALPPDVTTQSVMGFDPLPPLDTIYSYVRPERLSPVSHGNTIALFFRS 617
Query: 1988 LLPNYTMEVXXXXXXXXXXWAQGERPDDGGAGGLNPDQGLNRLMLAVRDMMANFHFRDLE 2167
LLPNYTME GER +DGGAGGLN +QGLNRLMLAVRDMMANFHF D+E
Sbjct: 618 LLPNYTME--------------GERLEDGGAGGLNHNQGLNRLMLAVRDMMANFHFHDVE 663
Query: 2168 VPPEDNPEGDGEWD 2209
EDNPEGDGEWD
Sbjct: 664 AAREDNPEGDGEWD 677
>ref|XP_860118.1| PREDICTED: similar to FKSG26 protein isoform 3 [Canis familiaris].
Length = 359
Score = 692 bits (1786), Expect = 0.0
Identities = 338/355 (95%), Positives = 354/355 (99%)
Frame = +2
Query: 947 MEPNNIVVLLQTSPYHVDSLLQLSDACRFQEDQEMARDLVERALHSMECAFHPLFSLTSG 1126
MEPNNIVVLLQTSPYHVDSLLQLSDACRFQEDQEMARDLVERAL+SMECAFHPLFSLTSG
Sbjct: 1 MEPNNIVVLLQTSPYHVDSLLQLSDACRFQEDQEMARDLVERALYSMECAFHPLFSLTSG 60
Query: 1127 TCRLDYRRPENRSFYLALYKQMTFLEKRGCPRTALEYCKLILSLEPDEDPLCMLLLVDHL 1306
TCRLDYRRPENRSFYLALYKQM+FLEKRGCPRTALE+CKLILSLEPDEDPLCMLLL+DHL
Sbjct: 61 TCRLDYRRPENRSFYLALYKQMSFLEKRGCPRTALEFCKLILSLEPDEDPLCMLLLIDHL 120
Query: 1307 ALRARSYEYLIRLFQEWEAHRNLSQLPNFAFSVPLAYFLLSQQAELPEQELSSAREQASV 1486
ALRAR+YEYLIRLFQEWEAHRNLSQLPNFAFSVPLAYFLLSQQA+LPEQEL+SAREQAS+
Sbjct: 121 ALRARNYEYLIRLFQEWEAHRNLSQLPNFAFSVPLAYFLLSQQADLPEQELNSAREQASL 180
Query: 1487 LVQQALLMFPGVLMPLLEYCSVRPDAAVASHRFFGPDAEISQPPALSQLVSLYLGRSHFL 1666
L++QAL MFPGVL+PLLEYCSVRPDAAVA+HRFFGPDAEISQPPALSQLVSLYLGRSHFL
Sbjct: 181 LIRQALTMFPGVLLPLLEYCSVRPDAAVATHRFFGPDAEISQPPALSQLVSLYLGRSHFL 240
Query: 1667 WKEPATMSWLEENVRKVLQAVDAGDPAVEACESRRKVLYQRAPRNIHRHVVLSEIKEAVA 1846
WKEPATMSWLEENVR+VLQAVD+GDPAVEACESRRKVLYQRAPRNIHRHVVLSE+KEAVA
Sbjct: 241 WKEPATMSWLEENVREVLQAVDSGDPAVEACESRRKVLYQRAPRNIHRHVVLSEVKEAVA 300
Query: 1847 ALPPDVTTQSVLGFDPLPPLDTIYSYVRPERLSPVSHGNTIALFFRSLLPNYTME 2011
ALPPDVTTQSV+GFDPLPPLDTIYSYVRPERLSPVSHGNTIALFFRSLLPNYTME
Sbjct: 301 ALPPDVTTQSVMGFDPLPPLDTIYSYVRPERLSPVSHGNTIALFFRSLLPNYTME 355
>ref|XP_860085.1| PREDICTED: similar to KIAA1049 protein isoform 2 [Canis familiaris].
Length = 113
Score = 217 bits (552), Expect = 5e-56
Identities = 105/109 (96%), Positives = 109/109 (100%)
Frame = +2
Query: 1685 MSWLEENVRKVLQAVDAGDPAVEACESRRKVLYQRAPRNIHRHVVLSEIKEAVAALPPDV 1864
MSWLEENVR+VLQAVD+GDPAVEACESRRKVLYQRAPRNIHRHVVLSE+KEAVAALPPDV
Sbjct: 1 MSWLEENVREVLQAVDSGDPAVEACESRRKVLYQRAPRNIHRHVVLSEVKEAVAALPPDV 60
Query: 1865 TTQSVLGFDPLPPLDTIYSYVRPERLSPVSHGNTIALFFRSLLPNYTME 2011
TTQSV+GFDPLPPLDTIYSYVRPERLSPVSHGNTIALFFRSLLPNYTME
Sbjct: 61 TTQSVMGFDPLPPLDTIYSYVRPERLSPVSHGNTIALFFRSLLPNYTME 109
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 87,273,568
Number of extensions: 2445890
Number of successful extensions: 14004
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 13872
Number of HSP's successfully gapped: 3
Length of query: 782
Length of database: 18,874,504
Length adjustment: 111
Effective length of query: 671
Effective length of database: 15,174,208
Effective search space: 10181893568
Effective search space used: 10181893568
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012701
(2347 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003126849.2| PREDICTED: transcription factor 25-like [Sus... 209 4e-54
Alignment gi|XP_003126848.2| PREDICTED: hypothetical protein LOC100524199... 91 4e-25
>ref|XP_003126849.2| PREDICTED: transcription factor 25-like [Sus scrofa].
Length = 138
Score = 209 bits (533), Expect = 4e-54
Identities = 103/117 (88%), Positives = 103/117 (88%)
Frame = +2
Query: 1859 DVTTQSVLGFDPLPPLDTIYSYVRPERLSPVSHGNTIALFFRSLLPNYTMEVXXXXXXXX 2038
DVTTQSVLGFDPLPPLDTIYSYVRPERLSPVSHGNTIALFFRSLLPNYTME
Sbjct: 36 DVTTQSVLGFDPLPPLDTIYSYVRPERLSPVSHGNTIALFFRSLLPNYTME--------- 86
Query: 2039 XXWAQGERPDDGGAGGLNPDQGLNRLMLAVRDMMANFHFRDLEVPPEDNPEGDGEWD 2209
GERPDDGGAGGLNPDQGLNRLMLAVRDMMANFHFRDLEVPPEDNPEGDGEWD
Sbjct: 87 -----GERPDDGGAGGLNPDQGLNRLMLAVRDMMANFHFRDLEVPPEDNPEGDGEWD 138
>ref|XP_003126848.2| PREDICTED: hypothetical protein LOC100524199 [Sus scrofa].
Length = 484
Score = 90.5 bits (223), Expect(2) = 4e-25
Identities = 46/77 (59%), Positives = 49/77 (63%)
Frame = +2
Query: 104 PVSRRQRLLGPMSXXXXXXXXXXXXXXXPLGPGALQFVLHDDDDAEEECPQQXXXXXXXX 283
P +RQRLLGPMS PLGPGALQFVLHDDDDAEEECPQQ
Sbjct: 207 PRCKRQRLLGPMSRRALRRLRGEQRGQEPLGPGALQFVLHDDDDAEEECPQQGPGGRRAR 266
Query: 284 XXXKEGVRVNNRFELIN 334
KEGVRVNNRFEL++
Sbjct: 267 GTGKEGVRVNNRFELVS 283
Score = 43.9 bits (102), Expect(2) = 4e-25
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +1
Query: 1 LRESGTAQTRRASLAPPRCK 60
LRESGTAQTRRASLAPPRCK
Sbjct: 191 LRESGTAQTRRASLAPPRCK 210
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 54,436,816
Number of extensions: 1579550
Number of successful extensions: 8632
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8523
Number of HSP's successfully gapped: 3
Length of query: 782
Length of database: 11,343,932
Length adjustment: 107
Effective length of query: 675
Effective length of database: 8,679,953
Effective search space: 5858968275
Effective search space used: 5858968275
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012701
(2347 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001032967.1| transcription factor 25 isoform c [Mus muscu... 1077 0.0
Alignment gi|NP_080080.2| transcription factor 25 isoform b [Mus musculus]. 1001 0.0
Alignment gi|NP_001032966.1| transcription factor 25 isoform a [Mus muscu... 1001 0.0
>ref|NP_001032967.1| transcription factor 25 isoform c [Mus musculus].
Length = 676
Score = 1077 bits (2785), Expect = 0.0
Identities = 543/674 (80%), Positives = 579/674 (85%)
Frame = +2
Query: 188 PLGPGALQFVLHDDDDAEEECPQQXXXXXXXXXXXKEGVRVNNRFELINIEDLDEGPVVN 367
PLGP AL+FVL DDDDAEEE P+ KEGVRVNNRFELIN EDL++ VVN
Sbjct: 18 PLGPDALKFVLLDDDDAEEEGPKPGLGGRRPGGAGKEGVRVNNRFELINTEDLEDDLVVN 77
Query: 368 GGRTDCPLTDTVASGSKRRPQGGRTATKRDGNVADRAVPPEQSSASGXXXXXXXXXXXXX 547
G R+DC L D+V+SG+K R + G TK+DG A +A EQS+ASG
Sbjct: 78 GERSDCTLPDSVSSGNKGRAKHGNAETKQDGG-ATKAGSSEQSNASGKLRKKKKKQKNKK 136
Query: 548 XAAGETSEDGLEDIGRILERIEDGSGXXXXXXXXXSSRKHVLYVEHRHLNPDTELKRYFG 727
GE+SE+GLEDI RILERIED SG SSRKHVLYVEHRHLNPDTELKRYFG
Sbjct: 137 SCTGESSENGLEDIDRILERIEDSSGFSHPGPPPLSSRKHVLYVEHRHLNPDTELKRYFG 196
Query: 728 ARAVLGEQRPRQRQRVYPKSSWLTTPKSTWPRYSKPGLSMRLLESKKGRSCFAFEHNEEY 907
ARAVLGEQRPRQRQRVYPK +WLTTPKSTWPRYSKPGLSMRLLESKKG S FAF+HNEEY
Sbjct: 197 ARAVLGEQRPRQRQRVYPKCTWLTTPKSTWPRYSKPGLSMRLLESKKGLSFFAFDHNEEY 256
Query: 908 QQTQHKFLAAVESMEPNNIVVLLQTSPYHVDSLLQLSDACRFQEDQEMARDLVERALHSM 1087
QQ QHKFL AVESMEPNNIVVLLQTSPYHVDSLLQLSDACRFQEDQEMARDL+ERAL+SM
Sbjct: 257 QQAQHKFLVAVESMEPNNIVVLLQTSPYHVDSLLQLSDACRFQEDQEMARDLIERALYSM 316
Query: 1088 ECAFHPLFSLTSGTCRLDYRRPENRSFYLALYKQMTFLEKRGCPRTALEYCKLILSLEPD 1267
ECAFHPLFSLTSGTCRLDYRRPENRSFYL LYKQM+FLEKRGCPRTALEYCKLILSLEPD
Sbjct: 317 ECAFHPLFSLTSGTCRLDYRRPENRSFYLTLYKQMSFLEKRGCPRTALEYCKLILSLEPD 376
Query: 1268 EDPLCMLLLVDHLALRARSYEYLIRLFQEWEAHRNLSQLPNFAFSVPLAYFLLSQQAELP 1447
EDPLCMLLL+DHLALRAR+YEYLIRLFQEWEAHRNLSQLPNFAFSVPLAYFLLSQQ +LP
Sbjct: 377 EDPLCMLLLIDHLALRARNYEYLIRLFQEWEAHRNLSQLPNFAFSVPLAYFLLSQQTDLP 436
Query: 1448 EQELSSAREQASVLVQQALLMFPGVLMPLLEYCSVRPDAAVASHRFFGPDAEISQPPALS 1627
E ELSSAR+QAS+L+QQAL MFPGVLMPLLEYCSVRPDA V++HRFFGPDAEISQPPAL
Sbjct: 437 EHELSSARQQASLLIQQALTMFPGVLMPLLEYCSVRPDATVSNHRFFGPDAEISQPPALG 496
Query: 1628 QLVSLYLGRSHFLWKEPATMSWLEENVRKVLQAVDAGDPAVEACESRRKVLYQRAPRNIH 1807
QLVSLYLGRSHFLWKEPA MSWLEENV +VLQAVDAGDPAVEACE+RRKVLYQRAPRNIH
Sbjct: 497 QLVSLYLGRSHFLWKEPAIMSWLEENVHEVLQAVDAGDPAVEACENRRKVLYQRAPRNIH 556
Query: 1808 RHVVLSEIKEAVAALPPDVTTQSVLGFDPLPPLDTIYSYVRPERLSPVSHGNTIALFFRS 1987
RHV+LSEIKEAVAALP DVTTQSV+GFDPLPPLDTIYSYVRPERLSPVSHGNTIALFFRS
Sbjct: 557 RHVILSEIKEAVAALPSDVTTQSVMGFDPLPPLDTIYSYVRPERLSPVSHGNTIALFFRS 616
Query: 1988 LLPNYTMEVXXXXXXXXXXWAQGERPDDGGAGGLNPDQGLNRLMLAVRDMMANFHFRDLE 2167
LLPNYT E GER ++G AGG N +QGLNRLMLAVRDMMANFHF DLE
Sbjct: 617 LLPNYTTE--------------GERLEEGVAGGPNRNQGLNRLMLAVRDMMANFHFNDLE 662
Query: 2168 VPPEDNPEGDGEWD 2209
VP EDNPEG+G+WD
Sbjct: 663 VPREDNPEGEGDWD 676
>ref|NP_080080.2| transcription factor 25 isoform b [Mus musculus].
Length = 625
Score = 1001 bits (2589), Expect = 0.0
Identities = 502/609 (82%), Positives = 534/609 (87%)
Frame = +2
Query: 188 PLGPGALQFVLHDDDDAEEECPQQXXXXXXXXXXXKEGVRVNNRFELINIEDLDEGPVVN 367
PLGP AL+FVL DDDDAEEE P+ KEGVRVNNRFELIN EDL++ VVN
Sbjct: 18 PLGPDALKFVLLDDDDAEEEGPKPGLGGRRPGGAGKEGVRVNNRFELINTEDLEDDLVVN 77
Query: 368 GGRTDCPLTDTVASGSKRRPQGGRTATKRDGNVADRAVPPEQSSASGXXXXXXXXXXXXX 547
G R+DC L D+V+SG+K R + G TK+DG A +A EQS+ASG
Sbjct: 78 GERSDCTLPDSVSSGNKGRAKHGNAETKQDGG-ATKAGSSEQSNASGKLRKKKKKQKNKK 136
Query: 548 XAAGETSEDGLEDIGRILERIEDGSGXXXXXXXXXSSRKHVLYVEHRHLNPDTELKRYFG 727
GE+SE+GLEDI RILERIED SG SSRKHVLYVEHRHLNPDTELKRYFG
Sbjct: 137 SCTGESSENGLEDIDRILERIEDSSGFSHPGPPPLSSRKHVLYVEHRHLNPDTELKRYFG 196
Query: 728 ARAVLGEQRPRQRQRVYPKSSWLTTPKSTWPRYSKPGLSMRLLESKKGRSCFAFEHNEEY 907
ARAVLGEQRPRQRQRVYPK +WLTTPKSTWPRYSKPGLSMRLLESKKG S FAF+HNEEY
Sbjct: 197 ARAVLGEQRPRQRQRVYPKCTWLTTPKSTWPRYSKPGLSMRLLESKKGLSFFAFDHNEEY 256
Query: 908 QQTQHKFLAAVESMEPNNIVVLLQTSPYHVDSLLQLSDACRFQEDQEMARDLVERALHSM 1087
QQ QHKFL AVESMEPNNIVVLLQTSPYHVDSLLQLSDACRFQEDQEMARDL+ERAL+SM
Sbjct: 257 QQAQHKFLVAVESMEPNNIVVLLQTSPYHVDSLLQLSDACRFQEDQEMARDLIERALYSM 316
Query: 1088 ECAFHPLFSLTSGTCRLDYRRPENRSFYLALYKQMTFLEKRGCPRTALEYCKLILSLEPD 1267
ECAFHPLFSLTSGTCRLDYRRPENRSFYL LYKQM+FLEKRGCPRTALEYCKLILSLEPD
Sbjct: 317 ECAFHPLFSLTSGTCRLDYRRPENRSFYLTLYKQMSFLEKRGCPRTALEYCKLILSLEPD 376
Query: 1268 EDPLCMLLLVDHLALRARSYEYLIRLFQEWEAHRNLSQLPNFAFSVPLAYFLLSQQAELP 1447
EDPLCMLLL+DHLALRAR+YEYLIRLFQEWEAHRNLSQLPNFAFSVPLAYFLLSQQ +LP
Sbjct: 377 EDPLCMLLLIDHLALRARNYEYLIRLFQEWEAHRNLSQLPNFAFSVPLAYFLLSQQTDLP 436
Query: 1448 EQELSSAREQASVLVQQALLMFPGVLMPLLEYCSVRPDAAVASHRFFGPDAEISQPPALS 1627
E ELSSAR+QAS+L+QQAL MFPGVLMPLLEYCSVRPDA V++HRFFGPDAEISQPPAL
Sbjct: 437 EHELSSARQQASLLIQQALTMFPGVLMPLLEYCSVRPDATVSNHRFFGPDAEISQPPALG 496
Query: 1628 QLVSLYLGRSHFLWKEPATMSWLEENVRKVLQAVDAGDPAVEACESRRKVLYQRAPRNIH 1807
QLVSLYLGRSHFLWKEPA MSWLEENV +VLQAVDAGDPAVEACE+RRKVLYQRAPRNIH
Sbjct: 497 QLVSLYLGRSHFLWKEPAIMSWLEENVHEVLQAVDAGDPAVEACENRRKVLYQRAPRNIH 556
Query: 1808 RHVVLSEIKEAVAALPPDVTTQSVLGFDPLPPLDTIYSYVRPERLSPVSHGNTIALFFRS 1987
RHV+LSEIKEAVAALP DVTTQSV+GFDPLPPLDTIYSYVRPERLSPVSHGNTIALFFRS
Sbjct: 557 RHVILSEIKEAVAALPSDVTTQSVMGFDPLPPLDTIYSYVRPERLSPVSHGNTIALFFRS 616
Query: 1988 LLPNYTMEV 2014
LLPNYT E+
Sbjct: 617 LLPNYTTEL 625
>ref|NP_001032966.1| transcription factor 25 isoform a [Mus musculus].
Length = 626
Score = 1001 bits (2588), Expect = 0.0
Identities = 502/608 (82%), Positives = 533/608 (87%)
Frame = +2
Query: 188 PLGPGALQFVLHDDDDAEEECPQQXXXXXXXXXXXKEGVRVNNRFELINIEDLDEGPVVN 367
PLGP AL+FVL DDDDAEEE P+ KEGVRVNNRFELIN EDL++ VVN
Sbjct: 18 PLGPDALKFVLLDDDDAEEEGPKPGLGGRRPGGAGKEGVRVNNRFELINTEDLEDDLVVN 77
Query: 368 GGRTDCPLTDTVASGSKRRPQGGRTATKRDGNVADRAVPPEQSSASGXXXXXXXXXXXXX 547
G R+DC L D+V+SG+K R + G TK+DG A +A EQS+ASG
Sbjct: 78 GERSDCTLPDSVSSGNKGRAKHGNAETKQDGG-ATKAGSSEQSNASGKLRKKKKKQKNKK 136
Query: 548 XAAGETSEDGLEDIGRILERIEDGSGXXXXXXXXXSSRKHVLYVEHRHLNPDTELKRYFG 727
GE+SE+GLEDI RILERIED SG SSRKHVLYVEHRHLNPDTELKRYFG
Sbjct: 137 SCTGESSENGLEDIDRILERIEDSSGFSHPGPPPLSSRKHVLYVEHRHLNPDTELKRYFG 196
Query: 728 ARAVLGEQRPRQRQRVYPKSSWLTTPKSTWPRYSKPGLSMRLLESKKGRSCFAFEHNEEY 907
ARAVLGEQRPRQRQRVYPK +WLTTPKSTWPRYSKPGLSMRLLESKKG S FAF+HNEEY
Sbjct: 197 ARAVLGEQRPRQRQRVYPKCTWLTTPKSTWPRYSKPGLSMRLLESKKGLSFFAFDHNEEY 256
Query: 908 QQTQHKFLAAVESMEPNNIVVLLQTSPYHVDSLLQLSDACRFQEDQEMARDLVERALHSM 1087
QQ QHKFL AVESMEPNNIVVLLQTSPYHVDSLLQLSDACRFQEDQEMARDL+ERAL+SM
Sbjct: 257 QQAQHKFLVAVESMEPNNIVVLLQTSPYHVDSLLQLSDACRFQEDQEMARDLIERALYSM 316
Query: 1088 ECAFHPLFSLTSGTCRLDYRRPENRSFYLALYKQMTFLEKRGCPRTALEYCKLILSLEPD 1267
ECAFHPLFSLTSGTCRLDYRRPENRSFYL LYKQM+FLEKRGCPRTALEYCKLILSLEPD
Sbjct: 317 ECAFHPLFSLTSGTCRLDYRRPENRSFYLTLYKQMSFLEKRGCPRTALEYCKLILSLEPD 376
Query: 1268 EDPLCMLLLVDHLALRARSYEYLIRLFQEWEAHRNLSQLPNFAFSVPLAYFLLSQQAELP 1447
EDPLCMLLL+DHLALRAR+YEYLIRLFQEWEAHRNLSQLPNFAFSVPLAYFLLSQQ +LP
Sbjct: 377 EDPLCMLLLIDHLALRARNYEYLIRLFQEWEAHRNLSQLPNFAFSVPLAYFLLSQQTDLP 436
Query: 1448 EQELSSAREQASVLVQQALLMFPGVLMPLLEYCSVRPDAAVASHRFFGPDAEISQPPALS 1627
E ELSSAR+QAS+L+QQAL MFPGVLMPLLEYCSVRPDA V++HRFFGPDAEISQPPAL
Sbjct: 437 EHELSSARQQASLLIQQALTMFPGVLMPLLEYCSVRPDATVSNHRFFGPDAEISQPPALG 496
Query: 1628 QLVSLYLGRSHFLWKEPATMSWLEENVRKVLQAVDAGDPAVEACESRRKVLYQRAPRNIH 1807
QLVSLYLGRSHFLWKEPA MSWLEENV +VLQAVDAGDPAVEACE+RRKVLYQRAPRNIH
Sbjct: 497 QLVSLYLGRSHFLWKEPAIMSWLEENVHEVLQAVDAGDPAVEACENRRKVLYQRAPRNIH 556
Query: 1808 RHVVLSEIKEAVAALPPDVTTQSVLGFDPLPPLDTIYSYVRPERLSPVSHGNTIALFFRS 1987
RHV+LSEIKEAVAALP DVTTQSV+GFDPLPPLDTIYSYVRPERLSPVSHGNTIALFFRS
Sbjct: 557 RHVILSEIKEAVAALPSDVTTQSVMGFDPLPPLDTIYSYVRPERLSPVSHGNTIALFFRS 616
Query: 1988 LLPNYTME 2011
LLPNYT E
Sbjct: 617 LLPNYTTE 624
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 71,544,143
Number of extensions: 1949148
Number of successful extensions: 9975
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 9867
Number of HSP's successfully gapped: 3
Length of query: 782
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 673
Effective length of database: 12,343,635
Effective search space: 8307266355
Effective search space used: 8307266355
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012701
(2347 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055787.1| transcription factor 25 [Homo sapiens]. 1076 0.0
>ref|NP_055787.1| transcription factor 25 [Homo sapiens].
Length = 676
Score = 1076 bits (2782), Expect = 0.0
Identities = 540/674 (80%), Positives = 580/674 (86%)
Frame = +2
Query: 188 PLGPGALQFVLHDDDDAEEECPQQXXXXXXXXXXXKEGVRVNNRFELINIEDLDEGPVVN 367
PLGPGAL F L DDDDAEEE P++ KEGVRVNNRFELINI+DL++ PVVN
Sbjct: 18 PLGPGALHFDLRDDDDAEEEGPKRELGVRRPGGAGKEGVRVNNRFELINIDDLEDDPVVN 77
Query: 368 GGRTDCPLTDTVASGSKRRPQGGRTATKRDGNVADRAVPPEQSSASGXXXXXXXXXXXXX 547
G R+ C LTD VA G+K R Q G T +K DG+ + VP EQS ASG
Sbjct: 78 GERSGCALTDAVAPGNKGRGQRGNTESKTDGDDTE-TVPSEQSHASGKLRKKKKKQKNKK 136
Query: 548 XAAGETSEDGLEDIGRILERIEDGSGXXXXXXXXXSSRKHVLYVEHRHLNPDTELKRYFG 727
+ GE SE+GLEDI RILERIED +G SSRKHVLYVEHRHLNPDTELKRYFG
Sbjct: 137 SSTGEASENGLEDIDRILERIEDSTGLNRPGPAPLSSRKHVLYVEHRHLNPDTELKRYFG 196
Query: 728 ARAVLGEQRPRQRQRVYPKSSWLTTPKSTWPRYSKPGLSMRLLESKKGRSCFAFEHNEEY 907
ARA+LGEQRPRQRQRVYPK +WLTTPKSTWPRYSKPGLSMRLLESKKG S FAFEH+EEY
Sbjct: 197 ARAILGEQRPRQRQRVYPKCTWLTTPKSTWPRYSKPGLSMRLLESKKGLSFFAFEHSEEY 256
Query: 908 QQTQHKFLAAVESMEPNNIVVLLQTSPYHVDSLLQLSDACRFQEDQEMARDLVERALHSM 1087
QQ QHKFL AVESMEPNNIVVLLQTSPYHVDSLLQLSDACRFQEDQEMARDLVERAL+SM
Sbjct: 257 QQAQHKFLVAVESMEPNNIVVLLQTSPYHVDSLLQLSDACRFQEDQEMARDLVERALYSM 316
Query: 1088 ECAFHPLFSLTSGTCRLDYRRPENRSFYLALYKQMTFLEKRGCPRTALEYCKLILSLEPD 1267
ECAFHPLFSLTSG CRLDYRRPENRSFYLALYKQM+FLEKRGCPRTALEYCKLILSLEPD
Sbjct: 317 ECAFHPLFSLTSGACRLDYRRPENRSFYLALYKQMSFLEKRGCPRTALEYCKLILSLEPD 376
Query: 1268 EDPLCMLLLVDHLALRARSYEYLIRLFQEWEAHRNLSQLPNFAFSVPLAYFLLSQQAELP 1447
EDPLCMLLL+DHLALRAR+YEYLIRLFQEWEAHRNLSQLPNFAFSVPLAYFLLSQQ +LP
Sbjct: 377 EDPLCMLLLIDHLALRARNYEYLIRLFQEWEAHRNLSQLPNFAFSVPLAYFLLSQQTDLP 436
Query: 1448 EQELSSAREQASVLVQQALLMFPGVLMPLLEYCSVRPDAAVASHRFFGPDAEISQPPALS 1627
E E SSAR++AS+L+QQAL MFPGVL+PLLE CSVRPDA+V+SHRFFGP+AEISQPPALS
Sbjct: 437 ECEQSSARQKASLLIQQALTMFPGVLLPLLESCSVRPDASVSSHRFFGPNAEISQPPALS 496
Query: 1628 QLVSLYLGRSHFLWKEPATMSWLEENVRKVLQAVDAGDPAVEACESRRKVLYQRAPRNIH 1807
QLV+LYLGRSHFLWKEPATMSWLEENV +VLQAVDAGDPAVEACE+RRKVLYQRAPRNIH
Sbjct: 497 QLVNLYLGRSHFLWKEPATMSWLEENVHEVLQAVDAGDPAVEACENRRKVLYQRAPRNIH 556
Query: 1808 RHVVLSEIKEAVAALPPDVTTQSVLGFDPLPPLDTIYSYVRPERLSPVSHGNTIALFFRS 1987
RHV+LSEIKEAVAALPPDVTTQSV+GFDPLPP DTIYSYVRPERLSP+SHGNTIALFFRS
Sbjct: 557 RHVILSEIKEAVAALPPDVTTQSVMGFDPLPPSDTIYSYVRPERLSPISHGNTIALFFRS 616
Query: 1988 LLPNYTMEVXXXXXXXXXXWAQGERPDDGGAGGLNPDQGLNRLMLAVRDMMANFHFRDLE 2167
LLPNYTME GERP++G AGGLN +QGLNRLMLAVRDMMANFH DLE
Sbjct: 617 LLPNYTME--------------GERPEEGVAGGLNRNQGLNRLMLAVRDMMANFHLNDLE 662
Query: 2168 VPPEDNPEGDGEWD 2209
P ED+ EG+GEWD
Sbjct: 663 APHEDDAEGEGEWD 676
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 85,169,416
Number of extensions: 2369570
Number of successful extensions: 12410
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 12277
Number of HSP's successfully gapped: 1
Length of query: 782
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 672
Effective length of database: 14,671,124
Effective search space: 9858995328
Effective search space used: 9858995328
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012701
(2347 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 583 e-163
>Sscrofa_Chr06
|| Length = 157765593
Score = 583 bits (294), Expect = e-163
Identities = 294/294 (100%)
Strand = Plus / Plus
Query: 2051 cagggggagaggccggacgacggcggggccgggggtctgaaccccgaccagggcctcaac 2110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251429 cagggggagaggccggacgacggcggggccgggggtctgaaccccgaccagggcctcaac 251488
Query: 2111 aggctgatgctggccgtgcgggacatgatggccaatttccacttccgcgacctggaggtg 2170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251489 aggctgatgctggccgtgcgggacatgatggccaatttccacttccgcgacctggaggtg 251548
Query: 2171 ccgccggaggacaaccccgagggcgacggggagtgggactgagggctgcgacccgcgcct 2230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251549 ccgccggaggacaaccccgagggcgacggggagtgggactgagggctgcgacccgcgcct 251608
Query: 2231 gccgcgcgatgccgctcttgcctccgtctggtcagggttggccgggtcgcggccgtggaa 2290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251609 gccgcgcgatgccgctcttgcctccgtctggtcagggttggccgggtcgcggccgtggaa 251668
Query: 2291 gcgctgacctgtccgcctgcctctgctgtttctcctataaacgtgaacgggtta 2344
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251669 gcgctgacctgtccgcctgcctctgctgtttctcctataaacgtgaacgggtta 251722
Score = 484 bits (244), Expect = e-133
Identities = 244/244 (100%)
Strand = Plus / Minus
Query: 85 ttttctgctcttccttctgccggtctccagacgtcagcggctgttgggtcctatgtcgcg 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282621 ttttctgctcttccttctgccggtctccagacgtcagcggctgttgggtcctatgtcgcg 282562
Query: 145 ccgggccctccggaggctgaggggggaacagcgcggccaggagccccttgggcccggcgc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282561 ccgggccctccggaggctgaggggggaacagcgcggccaggagccccttgggcccggcgc 282502
Query: 205 cctgcagtttgtcctccatgatgacgatgatgcagaagaagaatgcccacagcaggggcc 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282501 cctgcagtttgtcctccatgatgacgatgatgcagaagaagaatgcccacagcaggggcc 282442
Query: 265 aggtggccggcgtgcccggggcacagggaaggagggcgtccgcgtcaacaaccggttcga 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282441 aggtggccggcgtgcccggggcacagggaaggagggcgtccgcgtcaacaaccggttcga 282382
Query: 325 gctg 328
||||
Sbjct: 282381 gctg 282378
Score = 484 bits (244), Expect = e-133
Identities = 244/244 (100%)
Strand = Plus / Minus
Query: 85 ttttctgctcttccttctgccggtctccagacgtcagcggctgttgggtcctatgtcgcg 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334396 ttttctgctcttccttctgccggtctccagacgtcagcggctgttgggtcctatgtcgcg 334337
Query: 145 ccgggccctccggaggctgaggggggaacagcgcggccaggagccccttgggcccggcgc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334336 ccgggccctccggaggctgaggggggaacagcgcggccaggagccccttgggcccggcgc 334277
Query: 205 cctgcagtttgtcctccatgatgacgatgatgcagaagaagaatgcccacagcaggggcc 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334276 cctgcagtttgtcctccatgatgacgatgatgcagaagaagaatgcccacagcaggggcc 334217
Query: 265 aggtggccggcgtgcccggggcacagggaaggagggcgtccgcgtcaacaaccggttcga 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334216 aggtggccggcgtgcccggggcacagggaaggagggcgtccgcgtcaacaaccggttcga 334157
Query: 325 gctg 328
||||
Sbjct: 334156 gctg 334153
Score = 329 bits (166), Expect = 4e-87
Identities = 166/166 (100%)
Strand = Plus / Minus
Query: 328 gatcaacatcgaggacctggacgagggcccggtggtcaacgggggcaggaccgactgtcc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241595 gatcaacatcgaggacctggacgagggcccggtggtcaacgggggcaggaccgactgtcc 241536
Query: 388 actcacggacactgtggcctcggggagcaagaggaggccccagggcggacgcacggcgac 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241535 actcacggacactgtggcctcggggagcaagaggaggccccagggcggacgcacggcgac 241476
Query: 448 caagcgggatggcaacgtggctgacagggcagtgccccccgagcag 493
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241475 caagcgggatggcaacgtggctgacagggcagtgccccccgagcag 241430
Score = 329 bits (166), Expect = 4e-87
Identities = 166/166 (100%)
Strand = Plus / Minus
Query: 328 gatcaacatcgaggacctggacgagggcccggtggtcaacgggggcaggaccgactgtcc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325557 gatcaacatcgaggacctggacgagggcccggtggtcaacgggggcaggaccgactgtcc 325498
Query: 388 actcacggacactgtggcctcggggagcaagaggaggccccagggcggacgcacggcgac 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325497 actcacggacactgtggcctcggggagcaagaggaggccccagggcggacgcacggcgac 325438
Query: 448 caagcgggatggcaacgtggctgacagggcagtgccccccgagcag 493
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325437 caagcgggatggcaacgtggctgacagggcagtgccccccgagcag 325392
Score = 321 bits (162), Expect = 1e-84
Identities = 162/162 (100%)
Strand = Plus / Minus
Query: 1359 aggcccatcggaacctgtctcagctcccaaattttgccttctccgtgccgctggcgtact 1418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231522 aggcccatcggaacctgtctcagctcccaaattttgccttctccgtgccgctggcgtact 231463
Query: 1419 tcctgctgagtcagcaggcggagctccccgagcaggagctgagctcggcgagggagcagg 1478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231462 tcctgctgagtcagcaggcggagctccccgagcaggagctgagctcggcgagggagcagg 231403
Query: 1479 cctcggtcctggtccagcaggccctcctcatgttccccggag 1520
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231402 cctcggtcctggtccagcaggccctcctcatgttccccggag 231361
Score = 272 bits (137), Expect = 8e-70
Identities = 137/137 (100%)
Strand = Plus / Minus
Query: 833 ccaggtctgtccatgcggctgctggagtccaagaagggccgctcctgctttgccttcgag 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234912 ccaggtctgtccatgcggctgctggagtccaagaagggccgctcctgctttgccttcgag 234853
Query: 893 cacaacgaggagtaccagcaaacgcagcacaagttcctggccgcggtggagtccatggag 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234852 cacaacgaggagtaccagcaaacgcagcacaagttcctggccgcggtggagtccatggag 234793
Query: 953 cccaacaacattgtggt 969
|||||||||||||||||
Sbjct: 234792 cccaacaacattgtggt 234776
Score = 234 bits (118), Expect = 2e-58
Identities = 118/118 (100%)
Strand = Plus / Plus
Query: 1937 aggctcagccccgtcagccacggaaacaccatcgccctcttctttcgctcgctgttgcca 1996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251148 aggctcagccccgtcagccacggaaacaccatcgccctcttctttcgctcgctgttgcca 251207
Query: 1997 aactacaccatggaggtgcgtggagctggtcccggccgccccgccgcctgggctcagg 2054
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251208 aactacaccatggaggtgcgtggagctggtcccggccgccccgccgcctgggctcagg 251265
Score = 216 bits (109), Expect = 4e-53
Identities = 109/109 (100%)
Strand = Plus / Minus
Query: 1253 agcctggagccagacgaggacccgctctgcatgttgctgctggtcgaccatctggccttg 1312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232446 agcctggagccagacgaggacccgctctgcatgttgctgctggtcgaccatctggccttg 232387
Query: 1313 cgggcgcggagctacgagtacctgatccgcctctttcaggagtgggagg 1361
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232386 cgggcgcggagctacgagtacctgatccgcctctttcaggagtgggagg 232338
Score = 200 bits (101), Expect = 2e-48
Identities = 101/101 (100%)
Strand = Plus / Minus
Query: 967 ggttctgctgcagacgagcccctatcacgtggattcgctcctgcagctcagcgatgcctg 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234625 ggttctgctgcagacgagcccctatcacgtggattcgctcctgcagctcagcgatgcctg 234566
Query: 1027 ccgctttcaggaggaccaggagatggcccgggaccttgtag 1067
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 234565 ccgctttcaggaggaccaggagatggcccgggaccttgtag 234525
Score = 192 bits (97), Expect = 6e-46
Identities = 97/97 (100%)
Strand = Plus / Minus
Query: 1066 agagcgtgcgctgcacagcatggagtgtgccttccaccccctgttcagcctcaccagcgg 1125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233890 agagcgtgcgctgcacagcatggagtgtgccttccaccccctgttcagcctcaccagcgg 233831
Query: 1126 gacctgccggctggactaccgcaggcctgagaacagg 1162
|||||||||||||||||||||||||||||||||||||
Sbjct: 233830 gacctgccggctggactaccgcaggcctgagaacagg 233794
Score = 188 bits (95), Expect = 9e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 1160 aggagcttctacctggccctctacaagcagatgaccttcctggagaagcggggctgccca 1219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232649 aggagcttctacctggccctctacaagcagatgaccttcctggagaagcggggctgccca 232590
Query: 1220 cgcacggcgcttgagtactgcaagctcatcctcag 1254
|||||||||||||||||||||||||||||||||||
Sbjct: 232589 cgcacggcgcttgagtactgcaagctcatcctcag 232555
Score = 172 bits (87), Expect = 6e-40
Identities = 87/87 (100%)
Strand = Plus / Minus
Query: 752 aggccgcggcagaggcagcgcgtgtaccccaagtcttcgtggctgaccacccccaagagc 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235723 aggccgcggcagaggcagcgcgtgtaccccaagtcttcgtggctgaccacccccaagagc 235664
Query: 812 acgtggccgcgctacagcaaaccaggt 838
|||||||||||||||||||||||||||
Sbjct: 235663 acgtggccgcgctacagcaaaccaggt 235637
Score = 163 bits (82), Expect = 5e-37
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 1858 ggatgtgaccacacagtccgtgctgggcttcgaccccctgcctcccctggacaccatcta 1917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250081 ggatgtgaccacacagtccgtgctgggcttcgaccccctgcctcccctggacaccatcta 250140
Query: 1918 ctcctacgtcaggccggagagg 1939
||||||||||||||||||||||
Sbjct: 250141 ctcctacgtcaggccggagagg 250162
Score = 155 bits (78), Expect = 1e-34
Identities = 78/78 (100%)
Strand = Plus / Minus
Query: 492 agtctagtgcgagcggcaaactccgcaagaagaaaaggaaacagaaaaacaagaagaacg 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240776 agtctagtgcgagcggcaaactccgcaagaagaaaaggaaacagaaaaacaagaagaacg 240717
Query: 552 ctgccggagaaacgtcgg 569
||||||||||||||||||
Sbjct: 240716 ctgccggagaaacgtcgg 240699
Score = 155 bits (78), Expect = 1e-34
Identities = 78/78 (100%)
Strand = Plus / Minus
Query: 492 agtctagtgcgagcggcaaactccgcaagaagaaaaggaaacagaaaaacaagaagaacg 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324738 agtctagtgcgagcggcaaactccgcaagaagaaaaggaaacagaaaaacaagaagaacg 324679
Query: 552 ctgccggagaaacgtcgg 569
||||||||||||||||||
Sbjct: 324678 ctgccggagaaacgtcgg 324661
Score = 139 bits (70), Expect = 8e-30
Identities = 70/70 (100%)
Strand = Plus / Minus
Query: 685 cagacacttgaatccggacacagaactgaagaggtacttcggtgcccgggctgtcctggg 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238408 cagacacttgaatccggacacagaactgaagaggtacttcggtgcccgggctgtcctggg 238349
Query: 745 ggagcagagg 754
||||||||||
Sbjct: 238348 ggagcagagg 238339
Score = 139 bits (70), Expect = 8e-30
Identities = 70/70 (100%)
Strand = Plus / Minus
Query: 685 cagacacttgaatccggacacagaactgaagaggtacttcggtgcccgggctgtcctggg 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322371 cagacacttgaatccggacacagaactgaagaggtacttcggtgcccgggctgtcctggg 322312
Query: 745 ggagcagagg 754
||||||||||
Sbjct: 322311 ggagcagagg 322302
Score = 117 bits (59), Expect = 3e-23
Identities = 59/59 (100%)
Strand = Plus / Minus
Query: 568 ggaggacgggctggaggacatcggccgcatcctggagaggatcgaggacggcagcggct 626
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238907 ggaggacgggctggaggacatcggccgcatcctggagaggatcgaggacggcagcggct 238849
Score = 117 bits (59), Expect = 3e-23
Identities = 59/59 (100%)
Strand = Plus / Minus
Query: 568 ggaggacgggctggaggacatcggccgcatcctggagaggatcgaggacggcagcggct 626
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322870 ggaggacgggctggaggacatcggccgcatcctggagaggatcgaggacggcagcggct 322812
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 50,800,777
Number of extensions: 342
Number of successful extensions: 342
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 342
Number of HSP's successfully gapped: 22
Length of query: 2347
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2325
Effective length of database: 2,808,408,574
Effective search space: 6529549934550
Effective search space used: 6529549934550
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)