Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012702
(1085 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033162.1| alanyl-tRNA editing protein Aarsd1 isoform 1... 556 e-158
Alignment gi|NP_001094545.1| alanyl-tRNA synthetase, cytoplasmic [Bos tau... 55 8e-08
Alignment gi|NP_001178140.1| probable alanyl-tRNA synthetase, mitochondri... 52 9e-07
Alignment gi|XP_002697304.1| PREDICTED: alanyl-tRNA synthetase 2, mitocho... 52 9e-07
>ref|NP_001033162.1| alanyl-tRNA editing protein Aarsd1 isoform 1 [Bos taurus].
Length = 444
Score = 556 bits (1432), Expect = e-158
Identities = 280/317 (88%), Positives = 285/317 (89%)
Frame = +2
Query: 101 MAFRCQRDSYAREFTTTVVSCSPAELQIEGSNGKKEVLSGFQVVLEDTLLFPEGGGQPDD 280
MAFRCQRDSYAREFTTTVVSC PAEL E SNGKKEVLSGFQVVLEDTLLFPEGGGQPDD
Sbjct: 1 MAFRCQRDSYAREFTTTVVSCRPAELHTEESNGKKEVLSGFQVVLEDTLLFPEGGGQPDD 60
Query: 281 HGTINDISVLRVTRRGAQADHFTQTPLTPGTEVQVRVDWERRFDHMQQHSGQHLITAVAD 460
GTINDISVLRVTRRG QADHFTQTPLTPGTEVQVRVDWERRFDHMQQHSGQHLITAVAD
Sbjct: 61 RGTINDISVLRVTRRGTQADHFTQTPLTPGTEVQVRVDWERRFDHMQQHSGQHLITAVAD 120
Query: 461 HLFGLKTTSWELGRLRSVIELDSPSVTAEQVAAIEQSVNEKIRDRLPVNVRELSLDDPEV 640
LFGLKTTSWELGRLRSVIELDSP+VTAEQVAAIE+SVNEKIRDRLPVNVRELSLDDPEV
Sbjct: 121 DLFGLKTTSWELGRLRSVIELDSPTVTAEQVAAIERSVNEKIRDRLPVNVRELSLDDPEV 180
Query: 641 EQVRARGLPDDHAGPIRVVTIKGVDSNMCCGTHVSNLSDLQVIKILGTEKGKKNKTNLTF 820
EQVR RGLPDDHAGPIRVVTI+ VDSNMCCGTHVSNLSDLQVIKILGTEKGKKNKTNL F
Sbjct: 181 EQVRGRGLPDDHAGPIRVVTIESVDSNMCCGTHVSNLSDLQVIKILGTEKGKKNKTNLIF 240
Query: 821 LAGNRVLKWMERSHSTERALTALLKCAAEDHVEAVXXXXXXXXXXXXXXXXXXRDLAVHI 1000
LAGNRVLKWMERSH E+ALTALLKC AEDHVEAV RDLAVHI
Sbjct: 241 LAGNRVLKWMERSHGIEKALTALLKCGAEDHVEAVKKLQNSSKLLQKNNLNLLRDLAVHI 300
Query: 1001 ALSLRNSPDWGGVVTLH 1051
A SLRNSPDWGGV+TLH
Sbjct: 301 AHSLRNSPDWGGVITLH 317
>ref|NP_001094545.1| alanyl-tRNA synthetase, cytoplasmic [Bos taurus].
Length = 968
Score = 55.5 bits (132), Expect = 8e-08
Identities = 61/268 (22%), Positives = 102/268 (38%), Gaps = 36/268 (13%)
Frame = +2
Query: 227 VVLEDTLLFPEGGGQPDDHGTI----------NDISVLRVTRRGAQADHFTQT--PLTPG 370
VVL+ T + E GGQ D G + + +V RG H L G
Sbjct: 527 VVLDKTCFYAEQGGQTYDEGYLVKVDDSSEDKTEFTVKNTQVRGGYVLHIGTLYGSLKVG 586
Query: 371 TEVQVRVDWERRFDHMQQHSGQHLITAVADHLFGLKTTSWELGRLRSVIELD-------- 526
+V++ +D RR M H+ H++ F L++ E + S++ D
Sbjct: 587 DQVRLFIDEPRRRPVMSNHTATHILN------FALRSVLGEADQRGSLVAPDRLRFDFTA 640
Query: 527 SPSVTAEQVAAIEQSVNEKIRDRLPVNVRELSLDDPEVEQVRARGLPDDHAGPIRVVTIK 706
+++ +Q+ E+ NE I PV + SL + Q + + P+RVV+I
Sbjct: 641 KGAMSTQQIKKAEEIANEMIEAAKPVYTEDCSLAAAKAIQGLRAVFDETYPDPVRVVSIG 700
Query: 707 GVDSNM----------------CCGTHVSNLSDLQVIKILGTEKGKKNKTNLTFLAGNRV 838
S + C GTH+ N S I+ E K + + G
Sbjct: 701 VPVSELLDDPSGPAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEA 760
Query: 839 LKWMERSHSTERALTALLKCAAEDHVEA 922
K + ++ S +++L C E V+A
Sbjct: 761 QKALRKAESLKKSL-----CVVEAKVKA 783
>ref|NP_001178140.1| probable alanyl-tRNA synthetase, mitochondrial [Bos taurus].
Length = 983
Score = 52.0 bits (123), Expect = 9e-07
Identities = 59/230 (25%), Positives = 96/230 (41%), Gaps = 27/230 (11%)
Frame = +2
Query: 227 VVLEDTLLFPEGGGQPDDHGTI-----NDI--SVLRVTRRGAQADHFTQTP--LTPGTEV 379
++L+ T + E GGQ D G + D+ V R G H P L G +V
Sbjct: 555 LLLDKTNFYAEQGGQASDRGYLVLVGQQDVLFPVARAQVCGGFILHEVVAPERLRVGDQV 614
Query: 380 QVRVDWERRFDHMQQHSGQHLITAVADHLFGLKT----TSWELGRLRSVIELDSPSVTAE 547
Q+ VD R M++H+ HL+ + G T + RLR + +P +T E
Sbjct: 615 QLHVDEAWRLSCMEKHTAIHLLNWALRQVLGPGTEQRGSHLNPERLRFDVATQAP-LTPE 673
Query: 548 QVAAIEQSVNEKIRDRLPVNVREL------------SLDD--PEVEQVRARGLPDDHAGP 685
Q+ A+E +V + + V + E+ SLD+ P+ +V + G+P HA
Sbjct: 674 QLRAVEVTVQKAVGRDEAVYMEEVALARTAHVPGLRSLDEVYPDPVRVVSVGVPVAHALD 733
Query: 686 IRVVTIKGVDSNMCCGTHVSNLSDLQVIKILGTEKGKKNKTNLTFLAGNR 835
+CCGTH+ + + I+G + K T L + G +
Sbjct: 734 PASQAALHTSVELCCGTHLLRTGAIGDLVIIGERQLVKGITRLLAVNGEQ 783
>ref|XP_002697304.1| PREDICTED: alanyl-tRNA synthetase 2, mitochondrial-like [Bos taurus].
Length = 983
Score = 52.0 bits (123), Expect = 9e-07
Identities = 59/230 (25%), Positives = 96/230 (41%), Gaps = 27/230 (11%)
Frame = +2
Query: 227 VVLEDTLLFPEGGGQPDDHGTI-----NDI--SVLRVTRRGAQADHFTQTP--LTPGTEV 379
++L+ T + E GGQ D G + D+ V R G H P L G +V
Sbjct: 555 LLLDKTNFYAEQGGQASDRGYLVLVGQQDVLFPVARAQVCGGFILHEVVAPERLRVGDQV 614
Query: 380 QVRVDWERRFDHMQQHSGQHLITAVADHLFGLKT----TSWELGRLRSVIELDSPSVTAE 547
Q+ VD R M++H+ HL+ + G T + RLR + +P +T E
Sbjct: 615 QLHVDEAWRLSCMEKHTAIHLLNWALRQVLGPGTEQRGSHLNPERLRFDVATQAP-LTPE 673
Query: 548 QVAAIEQSVNEKIRDRLPVNVREL------------SLDD--PEVEQVRARGLPDDHAGP 685
Q+ A+E +V + + V + E+ SLD+ P+ +V + G+P HA
Sbjct: 674 QLRAVEVTVQKAVGRDEAVYMEEVALARTAHVPGLRSLDEVYPDPVRVVSVGVPVAHALD 733
Query: 686 IRVVTIKGVDSNMCCGTHVSNLSDLQVIKILGTEKGKKNKTNLTFLAGNR 835
+CCGTH+ + + I+G + K T L + G +
Sbjct: 734 PASQAALHTSVELCCGTHLLRTGAIGDLVIIGERQLVKGITRLLAVNGEQ 783
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,615,756
Number of extensions: 1165225
Number of successful extensions: 4701
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4691
Number of HSP's successfully gapped: 4
Length of query: 361
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 258
Effective length of database: 14,273,310
Effective search space: 3682513980
Effective search space used: 3682513980
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012702
(1085 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537630.2| PREDICTED: similar to CG10802-PA [Canis familia... 535 e-152
Alignment gi|XP_532155.2| PREDICTED: similar to alanyl-tRNA synthetase li... 59 1e-08
Alignment gi|XP_536788.2| PREDICTED: similar to Alanyl-tRNA synthetase (A... 49 8e-06
Alignment gi|XP_861855.1| PREDICTED: similar to Alanyl-tRNA synthetase (A... 49 8e-06
>ref|XP_537630.2| PREDICTED: similar to CG10802-PA [Canis familiaris].
Length = 543
Score = 535 bits (1379), Expect(2) = e-152
Identities = 268/305 (87%), Positives = 274/305 (89%)
Frame = +2
Query: 137 EFTTTVVSCSPAELQIEGSNGKKEVLSGFQVVLEDTLLFPEGGGQPDDHGTINDISVLRV 316
+FTTTVVSC PAEL+ EGSNGKKEVLSGFQVVLEDTLLFPEGGGQPDDHGTIN ISVLRV
Sbjct: 144 DFTTTVVSCRPAELETEGSNGKKEVLSGFQVVLEDTLLFPEGGGQPDDHGTINGISVLRV 203
Query: 317 TRRGAQADHFTQTPLTPGTEVQVRVDWERRFDHMQQHSGQHLITAVADHLFGLKTTSWEL 496
TRRGAQADHFTQTPL PGTEVQVRVDWERRFDHMQQHSGQHLITAVADHLFGLKTTSWEL
Sbjct: 204 TRRGAQADHFTQTPLAPGTEVQVRVDWERRFDHMQQHSGQHLITAVADHLFGLKTTSWEL 263
Query: 497 GRLRSVIELDSPSVTAEQVAAIEQSVNEKIRDRLPVNVRELSLDDPEVEQVRARGLPDDH 676
GRLRSVIELDSPSVT EQVAAIEQSVNEKIRDRLPVNVRELSLDDPEVEQVR RGLPDDH
Sbjct: 264 GRLRSVIELDSPSVTIEQVAAIEQSVNEKIRDRLPVNVRELSLDDPEVEQVRGRGLPDDH 323
Query: 677 AGPIRVVTIKGVDSNMCCGTHVSNLSDLQVIKILGTEKGKKNKTNLTFLAGNRVLKWMER 856
AGPIRVVTI+ VD+NMCCGTHVSNLSDLQVIKILG EKGKKNKTNL FLAGNRVLKWMER
Sbjct: 324 AGPIRVVTIENVDANMCCGTHVSNLSDLQVIKILGIEKGKKNKTNLAFLAGNRVLKWMER 383
Query: 857 SHSTERALTALLKCAAEDHVEAVXXXXXXXXXXXXXXXXXXRDLAVHIALSLRNSPDWGG 1036
SH TE+ALTALLKC EDHVEAV RDLAVH+A SLRNSPDWGG
Sbjct: 384 SHGTEKALTALLKCGVEDHVEAVKKLQNSTKLLQKNNLNLLRDLAVHVAHSLRNSPDWGG 443
Query: 1037 VVTLH 1051
VVTLH
Sbjct: 444 VVTLH 448
Score = 24.3 bits (51), Expect(2) = e-152
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +1
Query: 1051 RKEGDSEIMNI 1083
RKEGDSE MNI
Sbjct: 449 RKEGDSEFMNI 459
>ref|XP_532155.2| PREDICTED: similar to alanyl-tRNA synthetase like [Canis familiaris].
Length = 985
Score = 58.5 bits (140), Expect = 1e-08
Identities = 66/263 (25%), Positives = 108/263 (41%), Gaps = 31/263 (11%)
Frame = +2
Query: 227 VVLEDTLLFPEGGGQPDDHGTINDIS-------VLRVTRRGAQADHFTQTP--LTPGTEV 379
++L+ T + E GGQ D G + + V R G H P L G +V
Sbjct: 557 LLLDKTNFYAEQGGQASDRGYLVRVGQEDVLFPVARAQICGGFILHEAVAPEGLKVGDQV 616
Query: 380 QVRVDWERRFDHMQQHSGQHLITAVADHLFGLKT----TSWELGRLRSVIELDSPSVTAE 547
Q+ VD R M++H+ HL+ G T + RLR + +P +T E
Sbjct: 617 QLHVDEAWRLGCMEKHTATHLLNWALRQALGPGTEQRGSHLNPERLRFDVATQAP-LTPE 675
Query: 548 QVAAIEQSVNEKIRDRLPVNVRELSLDDPEVEQVRARGLPDDHAGPIRVVTI-----KGV 712
Q+ A+E +V E + V + E++L R L + + P+RVV++ + +
Sbjct: 676 QLQAVEGTVQEAVGQDEAVYMEEVALAHT-AHVPGLRSLDEVYPDPVRVVSVGVPVARAL 734
Query: 713 DS----------NMCCGTHVSNLSDLQVIKILGTEKGKKNKTNLTFLAGNRVLKWMERSH 862
D +CCGTH+ + + I+G + K L + G + + E
Sbjct: 735 DPASQAALQTSVELCCGTHLLRTGAVGDLVIIGERQLTKGTVRLLAVTGEQAQQAREVGQ 794
Query: 863 STER---ALTALLKCAAEDHVEA 922
S + A T L ++D VEA
Sbjct: 795 SLAQEVEAATERLSRGSQDVVEA 817
>ref|XP_536788.2| PREDICTED: similar to Alanyl-tRNA synthetase (Alanine--tRNA ligase)
(AlaRS) isoform 1 [Canis familiaris].
Length = 968
Score = 48.9 bits (115), Expect = 8e-06
Identities = 58/267 (21%), Positives = 103/267 (38%), Gaps = 38/267 (14%)
Frame = +2
Query: 203 KEVLSGFQ--VVLEDTLLFPEGGGQPDDHGTI----------NDISVLRVTRRGAQADHF 346
+EV +G + VVL+ T + E GGQ D G + + +V RG H
Sbjct: 517 EEVSTGQECGVVLDKTCFYAEQGGQIYDEGYLVKVEDNSEDKMEFTVKNAQVRGGYVLHI 576
Query: 347 TQT--PLTPGTEVQVRVDWERRFDHMQQHSGQHLITAVADHLFGLKTTSWELGRLRSVIE 520
L G +V++ +D RR M H+ H++ F L++ E + S++
Sbjct: 577 GTIYGSLRVGDQVRLFIDEPRRRPIMSNHTATHILN------FALRSVLGEADQKGSLVA 630
Query: 521 LD--------SPSVTAEQVAAIEQSVNEKIRDRLPVNVRELSLDDPEVEQVRARGLPDDH 676
D +++ +Q+ E+ N I PV ++ L + Q + +
Sbjct: 631 PDRLRFDFTAKGAMSTQQIKKAEEIANGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETY 690
Query: 677 AGPIRVVTIKGVDSNM----------------CCGTHVSNLSDLQVIKILGTEKGKKNKT 808
P+RVV+I S + C GTH+ N S I+ E K
Sbjct: 691 PDPVRVVSIGVPVSELLEDPSGPAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIR 750
Query: 809 NLTFLAGNRVLKWMERSHSTERALTAL 889
+ + G K + ++ S + +L+ +
Sbjct: 751 RIVAVTGAEAQKALRKAESLKNSLSVM 777
>ref|XP_861855.1| PREDICTED: similar to Alanyl-tRNA synthetase (Alanine--tRNA ligase)
(AlaRS) isoform 3 [Canis familiaris].
Length = 852
Score = 48.9 bits (115), Expect = 8e-06
Identities = 58/267 (21%), Positives = 103/267 (38%), Gaps = 38/267 (14%)
Frame = +2
Query: 203 KEVLSGFQ--VVLEDTLLFPEGGGQPDDHGTI----------NDISVLRVTRRGAQADHF 346
+EV +G + VVL+ T + E GGQ D G + + +V RG H
Sbjct: 401 EEVSTGQECGVVLDKTCFYAEQGGQIYDEGYLVKVEDNSEDKMEFTVKNAQVRGGYVLHI 460
Query: 347 TQT--PLTPGTEVQVRVDWERRFDHMQQHSGQHLITAVADHLFGLKTTSWELGRLRSVIE 520
L G +V++ +D RR M H+ H++ F L++ E + S++
Sbjct: 461 GTIYGSLRVGDQVRLFIDEPRRRPIMSNHTATHILN------FALRSVLGEADQKGSLVA 514
Query: 521 LD--------SPSVTAEQVAAIEQSVNEKIRDRLPVNVRELSLDDPEVEQVRARGLPDDH 676
D +++ +Q+ E+ N I PV ++ L + Q + +
Sbjct: 515 PDRLRFDFTAKGAMSTQQIKKAEEIANGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETY 574
Query: 677 AGPIRVVTIKGVDSNM----------------CCGTHVSNLSDLQVIKILGTEKGKKNKT 808
P+RVV+I S + C GTH+ N S I+ E K
Sbjct: 575 PDPVRVVSIGVPVSELLEDPSGPAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIR 634
Query: 809 NLTFLAGNRVLKWMERSHSTERALTAL 889
+ + G K + ++ S + +L+ +
Sbjct: 635 RIVAVTGAEAQKALRKAESLKNSLSVM 661
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,316,424
Number of extensions: 1196310
Number of successful extensions: 4686
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4667
Number of HSP's successfully gapped: 5
Length of query: 361
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 257
Effective length of database: 15,407,560
Effective search space: 3959742920
Effective search space used: 3959742920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012702
(1085 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001929628.1| PREDICTED: alanyl-tRNA synthetase, mitochond... 65 7e-11
>ref|XP_001929628.1| PREDICTED: alanyl-tRNA synthetase, mitochondrial [Sus scrofa].
Length = 985
Score = 65.1 bits (157), Expect = 7e-11
Identities = 80/317 (25%), Positives = 128/317 (40%), Gaps = 34/317 (10%)
Frame = +2
Query: 74 IPPF*ETAPMAFRCQRDSYAREFTTTVVSCSPAELQIEGSNGKKEVLSG----FQVVLED 241
+PP + +P R S EF+T C LQ+ +G+ +G + ++L+
Sbjct: 507 VPPT-DDSPKYSYSLRPSGGYEFST----CEARVLQLYAEDGRAVATTGEGQRYGLLLDR 561
Query: 242 TLLFPEGGGQPDDHGTINDISVLRVTRRGAQAD-------HFTQTP--LTPGTEVQVRVD 394
T + E GGQ D G + + V AQA H P L G VQ+ VD
Sbjct: 562 TNFYAEQGGQASDRGYLVRVEQQDVLFPVAQAQVCGGFILHEVVAPECLKVGDRVQLHVD 621
Query: 395 WERRFDHMQQHSGQHLITAVADHLFGLKT----TSWELGRLRSVIELDSPSVTAEQVAAI 562
R M++H+ HL+ G T + RLR + +P +T +Q+ A+
Sbjct: 622 EAWRLSCMEKHTAAHLLNWALRKALGPSTEQRGSHLSPERLRFDVATQAP-LTPKQLQAV 680
Query: 563 EQSVNEKIRDRLPVNVREL------------SLDD--PEVEQVRARGLPDDHAGPIRVVT 700
E +V E + V + E+ SLD+ P+ +V + G+P HA
Sbjct: 681 EDTVQEAVGRDEAVYMEEVALARTTHVPGLRSLDEVYPDPVRVVSVGVPVAHALEPASQA 740
Query: 701 IKGVDSNMCCGTHVSNLSDLQVIKILGTEKGKKNKTNLTFLAGNRVLKWMERSHSTERAL 880
+CCGTH+ + + I+G + K T L + G + + E S + +
Sbjct: 741 ALQTSVELCCGTHLLRTGAIGDLVIVGERQLAKGTTRLLAITGEQARQAREVGQSLAQEV 800
Query: 881 TAL---LKCAAEDHVEA 922
A L + D VEA
Sbjct: 801 EAAAERLSRGSRDVVEA 817
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,181,586
Number of extensions: 749673
Number of successful extensions: 3308
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3299
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 261
Effective length of database: 8,854,232
Effective search space: 2310954552
Effective search space used: 2310954552
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012702
(1085 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_659078.1| alanyl-tRNA editing protein Aarsd1 [Mus musculu... 538 e-153
Alignment gi|NP_666329.2| alanyl-tRNA synthetase, cytoplasmic [Mus muscul... 53 5e-07
Alignment gi|NP_941010.2| alanyl-tRNA synthetase, mitochondrial precursor... 51 1e-06
>ref|NP_659078.1| alanyl-tRNA editing protein Aarsd1 [Mus musculus].
Length = 412
Score = 538 bits (1386), Expect(2) = e-153
Identities = 270/317 (85%), Positives = 284/317 (89%)
Frame = +2
Query: 101 MAFRCQRDSYAREFTTTVVSCSPAELQIEGSNGKKEVLSGFQVVLEDTLLFPEGGGQPDD 280
MAF CQRDSYAREFTTTVVSCSPAELQ + S GKKEVLSGF VVLEDTLLFPEGGGQPDD
Sbjct: 1 MAFLCQRDSYAREFTTTVVSCSPAELQTDASGGKKEVLSGFHVVLEDTLLFPEGGGQPDD 60
Query: 281 HGTINDISVLRVTRRGAQADHFTQTPLTPGTEVQVRVDWERRFDHMQQHSGQHLITAVAD 460
GTINDISVLRVTRRGAQADHFT++PL+PG++VQVRVDWERRFDHMQQHSGQHLITAVAD
Sbjct: 61 RGTINDISVLRVTRRGAQADHFTESPLSPGSQVQVRVDWERRFDHMQQHSGQHLITAVAD 120
Query: 461 HLFGLKTTSWELGRLRSVIELDSPSVTAEQVAAIEQSVNEKIRDRLPVNVRELSLDDPEV 640
LFGLKTTSWELGRLRSVIELDSPSVTAEQVAAIEQSVN+KIRDRLPV+VRELSLDDPEV
Sbjct: 121 LLFGLKTTSWELGRLRSVIELDSPSVTAEQVAAIEQSVNQKIRDRLPVSVRELSLDDPEV 180
Query: 641 EQVRARGLPDDHAGPIRVVTIKGVDSNMCCGTHVSNLSDLQVIKILGTEKGKKNKTNLTF 820
EQVR RGLPDDHAGPIRVVTI+GVDSNMCCGTHVSNLSDLQVIKILGTEKGKKNK+NL F
Sbjct: 181 EQVRGRGLPDDHAGPIRVVTIEGVDSNMCCGTHVSNLSDLQVIKILGTEKGKKNKSNLIF 240
Query: 821 LAGNRVLKWMERSHSTERALTALLKCAAEDHVEAVXXXXXXXXXXXXXXXXXXRDLAVHI 1000
LAGNRVLKWMERSH +E+ALT+LLKC EDHVEAV RDLAVH
Sbjct: 241 LAGNRVLKWMERSHGSEKALTSLLKCGVEDHVEAVKKLQNATKLLQKNNLNLLRDLAVHT 300
Query: 1001 ALSLRNSPDWGGVVTLH 1051
A SLR+SP WGGVVTLH
Sbjct: 301 AHSLRSSPAWGGVVTLH 317
Score = 24.3 bits (51), Expect(2) = e-153
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +1
Query: 1051 RKEGDSEIMNI 1083
RKEGDSE MNI
Sbjct: 318 RKEGDSEFMNI 328
>ref|NP_666329.2| alanyl-tRNA synthetase, cytoplasmic [Mus musculus].
Length = 968
Score = 52.8 bits (125), Expect = 5e-07
Identities = 60/266 (22%), Positives = 106/266 (39%), Gaps = 38/266 (14%)
Frame = +2
Query: 206 EVLSGFQ--VVLEDTLLFPEGGGQPDDHGTI----------NDISVLRVTRRGAQADHFT 349
EV++G + VVL+ T + E GGQ D G + + +V RG H
Sbjct: 518 EVVTGQECGVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIG 577
Query: 350 QT--PLTPGTEVQVRVDWERRFDHMQQHSGQHLITAVADHLFGLKTTSWELGRLRSVIEL 523
L G +V++ +D RR M H+ H++ F L++ E + S++
Sbjct: 578 TIYGNLKVGDQVRLFIDEPRRRPVMSNHTATHILN------FALRSVLGEADQKGSLVAP 631
Query: 524 D--------SPSVTAEQVAAIEQSVNEKIRDRLPVNVRELSLDDPEVEQVRARGLPDDHA 679
D +++ +Q+ E+ VN I PV ++ L + Q + +
Sbjct: 632 DRLRFDFTAKGAMSTQQIKKAEEIVNGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYP 691
Query: 680 GPIRVVTIKGVDSNM----------------CCGTHVSNLSDLQVIKILGTEKGKKNKTN 811
P+RVV+I S + C GTH+ N S I+ E K
Sbjct: 692 DPVRVVSIGVPVSELLDDPCGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRR 751
Query: 812 LTFLAGNRVLKWMERSHSTERALTAL 889
+ + G K + +S + +++L+A+
Sbjct: 752 IVAVTGAEAQKALRKSETLKKSLSAM 777
>ref|NP_941010.2| alanyl-tRNA synthetase, mitochondrial precursor [Mus musculus].
Length = 980
Score = 51.2 bits (121), Expect = 1e-06
Identities = 63/248 (25%), Positives = 102/248 (41%), Gaps = 28/248 (11%)
Frame = +2
Query: 227 VVLEDTLLFPEGGGQPDDHGTI-----NDI--SVLRVTRRGAQADHFTQTP--LTPGTEV 379
++L+ T + E GGQ D G + D+ V G H P L G +V
Sbjct: 552 LLLDRTNFYAEQGGQASDRGYLVRTGQQDMLFPVAGAQLCGGFILHEAMAPERLQVGDQV 611
Query: 380 QVRVDWERRFDHMQQHSGQHLITAVADHLFGLKT----TSWELGRLRSVIELDSPSVTAE 547
Q+ VD R M +H+ HL++ G T + RLR + + +T E
Sbjct: 612 QLYVDKAWRMGCMVKHTATHLLSWALRQTLGPTTEQRGSHLNPERLRFDVATQT-LLTTE 670
Query: 548 QVAAIEQSVNEKIRDRLPVNVREL------------SLDD--PEVEQVRARGLPDDHA-G 682
Q+ +E V E + PV + E+ SLD+ P+ +V + G+P HA G
Sbjct: 671 QLRTVESYVQEVVGQDKPVFMEEVPLAHTARIPGLRSLDEVYPDPVRVVSVGVPVAHALG 730
Query: 683 PIRVVTIKGVDSNMCCGTHVSNLSDLQVIKILGTEKGKKNKTNLTFLAGNRVLKWMERSH 862
P + +CCGTH+ + + + I+G + K T L + G + + E
Sbjct: 731 PASQAAMH-TSVELCCGTHLLSTGAVGDLVIIGERQLVKGITRLLAITGEQAQQAREVGQ 789
Query: 863 STERALTA 886
S + + A
Sbjct: 790 SLSQEVEA 797
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,084,247
Number of extensions: 980227
Number of successful extensions: 3811
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3803
Number of HSP's successfully gapped: 4
Length of query: 361
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 258
Effective length of database: 12,523,851
Effective search space: 3231153558
Effective search space used: 3231153558
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012702
(1085 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001129514.2| alanyl-tRNA editing protein Aarsd1 isoform 1... 519 e-148
Alignment gi|NP_079543.1| alanyl-tRNA editing protein Aarsd1 isoform 2 [H... 519 e-148
Alignment gi|NP_065796.1| alanyl-tRNA synthetase, mitochondrial precursor... 58 2e-08
>ref|NP_001129514.2| alanyl-tRNA editing protein Aarsd1 isoform 1 [Homo sapiens].
Length = 586
Score = 519 bits (1337), Expect(2) = e-148
Identities = 260/305 (85%), Positives = 270/305 (88%)
Frame = +2
Query: 137 EFTTTVVSCSPAELQIEGSNGKKEVLSGFQVVLEDTLLFPEGGGQPDDHGTINDISVLRV 316
+FTTTVVSC PAELQ EGSNGKKEVLSGFQVVLEDT+LFPEGGGQPDD GTINDISVLRV
Sbjct: 187 DFTTTVVSCCPAELQTEGSNGKKEVLSGFQVVLEDTVLFPEGGGQPDDRGTINDISVLRV 246
Query: 317 TRRGAQADHFTQTPLTPGTEVQVRVDWERRFDHMQQHSGQHLITAVADHLFGLKTTSWEL 496
TRRG QADHFTQTPL PG++V VRVDWERRFDHMQQHSGQHLITAVADHLF LKTTSWEL
Sbjct: 247 TRRGEQADHFTQTPLDPGSQVLVRVDWERRFDHMQQHSGQHLITAVADHLFKLKTTSWEL 306
Query: 497 GRLRSVIELDSPSVTAEQVAAIEQSVNEKIRDRLPVNVRELSLDDPEVEQVRARGLPDDH 676
GR RS IELD+PS+TAEQVAAIEQSVNEKIRDRLPVNVRELSLDDPEVEQV RGLPDDH
Sbjct: 307 GRFRSAIELDTPSMTAEQVAAIEQSVNEKIRDRLPVNVRELSLDDPEVEQVSGRGLPDDH 366
Query: 677 AGPIRVVTIKGVDSNMCCGTHVSNLSDLQVIKILGTEKGKKNKTNLTFLAGNRVLKWMER 856
AGPIRVV I+GVDSNMCCGTHVSNLSDLQVIKILGTEKGKKN+TNL FL+GNRVLKWMER
Sbjct: 367 AGPIRVVNIEGVDSNMCCGTHVSNLSDLQVIKILGTEKGKKNRTNLIFLSGNRVLKWMER 426
Query: 857 SHSTERALTALLKCAAEDHVEAVXXXXXXXXXXXXXXXXXXRDLAVHIALSLRNSPDWGG 1036
SH TE+ALTALLKC AEDHVEAV RDLAVHIA SLRNSPDWGG
Sbjct: 427 SHGTEKALTALLKCGAEDHVEAVKKLQNSTKILQKNNLNLLRDLAVHIAHSLRNSPDWGG 486
Query: 1037 VVTLH 1051
VV LH
Sbjct: 487 VVILH 491
Score = 24.3 bits (51), Expect(2) = e-148
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +1
Query: 1051 RKEGDSEIMNI 1083
RKEGDSE MNI
Sbjct: 492 RKEGDSEFMNI 502
>ref|NP_079543.1| alanyl-tRNA editing protein Aarsd1 isoform 2 [Homo sapiens].
Length = 525
Score = 519 bits (1337), Expect(2) = e-148
Identities = 260/305 (85%), Positives = 270/305 (88%)
Frame = +2
Query: 137 EFTTTVVSCSPAELQIEGSNGKKEVLSGFQVVLEDTLLFPEGGGQPDDHGTINDISVLRV 316
+FTTTVVSC PAELQ EGSNGKKEVLSGFQVVLEDT+LFPEGGGQPDD GTINDISVLRV
Sbjct: 126 DFTTTVVSCCPAELQTEGSNGKKEVLSGFQVVLEDTVLFPEGGGQPDDRGTINDISVLRV 185
Query: 317 TRRGAQADHFTQTPLTPGTEVQVRVDWERRFDHMQQHSGQHLITAVADHLFGLKTTSWEL 496
TRRG QADHFTQTPL PG++V VRVDWERRFDHMQQHSGQHLITAVADHLF LKTTSWEL
Sbjct: 186 TRRGEQADHFTQTPLDPGSQVLVRVDWERRFDHMQQHSGQHLITAVADHLFKLKTTSWEL 245
Query: 497 GRLRSVIELDSPSVTAEQVAAIEQSVNEKIRDRLPVNVRELSLDDPEVEQVRARGLPDDH 676
GR RS IELD+PS+TAEQVAAIEQSVNEKIRDRLPVNVRELSLDDPEVEQV RGLPDDH
Sbjct: 246 GRFRSAIELDTPSMTAEQVAAIEQSVNEKIRDRLPVNVRELSLDDPEVEQVSGRGLPDDH 305
Query: 677 AGPIRVVTIKGVDSNMCCGTHVSNLSDLQVIKILGTEKGKKNKTNLTFLAGNRVLKWMER 856
AGPIRVV I+GVDSNMCCGTHVSNLSDLQVIKILGTEKGKKN+TNL FL+GNRVLKWMER
Sbjct: 306 AGPIRVVNIEGVDSNMCCGTHVSNLSDLQVIKILGTEKGKKNRTNLIFLSGNRVLKWMER 365
Query: 857 SHSTERALTALLKCAAEDHVEAVXXXXXXXXXXXXXXXXXXRDLAVHIALSLRNSPDWGG 1036
SH TE+ALTALLKC AEDHVEAV RDLAVHIA SLRNSPDWGG
Sbjct: 366 SHGTEKALTALLKCGAEDHVEAVKKLQNSTKILQKNNLNLLRDLAVHIAHSLRNSPDWGG 425
Query: 1037 VVTLH 1051
VV LH
Sbjct: 426 VVILH 430
Score = 24.3 bits (51), Expect(2) = e-148
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +1
Query: 1051 RKEGDSEIMNI 1083
RKEGDSE MNI
Sbjct: 431 RKEGDSEFMNI 441
>ref|NP_065796.1| alanyl-tRNA synthetase, mitochondrial precursor [Homo sapiens].
Length = 985
Score = 57.8 bits (138), Expect = 2e-08
Identities = 80/318 (25%), Positives = 125/318 (39%), Gaps = 34/318 (10%)
Frame = +2
Query: 74 IPPF*ETAPMAFRCQRDSYAREFTTTVVSCSPAELQIEGSNGKKEVLSG----FQVVLED 241
+PP + +P R S + EF T C LQ+ +G G ++L+
Sbjct: 507 VPPT-DDSPKYNYSLRPSGSYEFGT----CEAQVLQLYTEDGTAVASVGKGQRCGLLLDR 561
Query: 242 TLLFPEGGGQPDDHGTI-----NDI--SVLRVTRRGAQADHFTQTP--LTPGTEVQVRVD 394
T + E GGQ D G + D+ V R G H P L G +VQ+ VD
Sbjct: 562 TNFYAEQGGQASDRGYLVRAGQEDVLFPVARAQVCGGFILHEAVAPECLRLGDQVQLHVD 621
Query: 395 WERRFDHMQQHSGQHLITAVADHLFGLKT----TSWELGRLRSVIELDSPSVTAEQVAAI 562
R M +H+ HL+ G T + +LR + +P +T EQ+ A+
Sbjct: 622 EAWRLGCMAKHTATHLLNWALRQTLGPGTEQQGSHLNPEQLRLDVTTQTP-LTPEQLRAV 680
Query: 563 EQSVNEKIRDRLPVNVREL------------SLDD--PEVEQVRARGLPDDHAGPIRVVT 700
E +V E + V + E+ SLD+ P+ +V + G+P HA
Sbjct: 681 ENTVQEAVGQDEAVYMEEVPLALTAQVPGLRSLDEVYPDPVRVVSVGVPVAHALDPASQA 740
Query: 701 IKGVDSNMCCGTHVSNLSDLQVIKILGTEKGKKNKTNLTFLAGNRVLKWMERSHSTE--- 871
+CCGTH+ + + I+G + K T L + G + + E S
Sbjct: 741 ALQTSVELCCGTHLLRTGAVGDLVIIGDRQLSKGTTRLLAVTGEQAQQARELGQSLAQEV 800
Query: 872 RALTALLKCAAEDHVEAV 925
+A T L + D EA+
Sbjct: 801 KAATERLSLGSRDVAEAL 818
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,544,153
Number of extensions: 1178692
Number of successful extensions: 4679
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4669
Number of HSP's successfully gapped: 5
Length of query: 361
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 257
Effective length of database: 14,868,908
Effective search space: 3821309356
Effective search space used: 3821309356
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012702
(1085 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL892323.1| Sus scrofa unplaced genomic scaffold chrU_scaffold12 204 7e-50
>gb|GL892323.1| Sus scrofa unplaced genomic scaffold chrU_scaffold12
Length = 103
Score = 204 bits (103), Expect = 7e-50
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 662 ttgccggatgatcacgctgggcctattcgagtcgttaccatcaagggcgttgattctaac 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 ttgccggatgatcacgctgggcctattcgagtcgttaccatcaagggcgttgattctaac 44
Query: 722 atgtgctgtgggacccacgtgagcaatctcagtgaccttcagg 764
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43 atgtgctgtgggacccacgtgagcaatctcagtgaccttcagg 1
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,946,884
Number of extensions: 156
Number of successful extensions: 156
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 1
Length of query: 1085
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1064
Effective length of database: 2,808,413,156
Effective search space: 2988151597984
Effective search space used: 2988151597984
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)