Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012705
(1318 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029595.1| 26S proteasome non-ATPase regulatory subunit... 513 e-145
Alignment gi|XP_002693111.1| PREDICTED: eukaryotic translation initiation... 95 2e-19
Alignment gi|XP_591540.2| PREDICTED: eukaryotic translation initiation fa... 95 2e-19
Alignment gi|NP_001095433.1| COP9 signalosome complex subunit 6 [Bos taur... 76 6e-14
>ref|NP_001029595.1| 26S proteasome non-ATPase regulatory subunit 7 [Bos taurus].
Length = 322
Score = 513 bits (1322), Expect = e-145
Identities = 260/285 (91%), Positives = 260/285 (91%)
Frame = +1
Query: 145 MPELAVQKXXXXXXXXXXXXDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDE 324
M ELAVQK DHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDE
Sbjct: 1 MLELAVQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDE 60
Query: 325 DDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSV 504
DDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSV
Sbjct: 61 DDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSV 120
Query: 505 LVIIDVKPKDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEIXXXXXXXXXXXHLLRDIK 684
LVIIDVKPKDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEI HLLRDIK
Sbjct: 121 LVIIDVKPKDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLLRDIK 180
Query: 685 DTTVGTLSQRITNQVHGLKGLNSKLLDIRSYLEKVATGKLPINHQIIYQLQDVFNLLPDV 864
DTTVGTLSQRITNQVHGLKGLNSKLLDIR YLEKVATGKLPINHQIIYQLQDVFNLLPDV
Sbjct: 181 DTTVGTLSQRITNQVHGLKGLNSKLLDIRGYLEKVATGKLPINHQIIYQLQDVFNLLPDV 240
Query: 865 SLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHNLINNKIANRDA 999
SLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHNLINNKIANRDA
Sbjct: 241 SLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHNLINNKIANRDA 285
>ref|XP_002693111.1| PREDICTED: eukaryotic translation initiation factor 3, subunit 5
epsilon, 47kDa-like isoform 1 [Bos taurus].
Length = 390
Score = 94.7 bits (234), Expect = 2e-19
Identities = 66/248 (26%), Positives = 122/248 (49%), Gaps = 3/248 (1%)
Frame = +1
Query: 244 RVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFKKVNARERIVG 423
RV+G LLG+ K ++V+N F+VP +E + + +V D ++ +NMY + KKV+ E I+G
Sbjct: 148 RVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAV---DMEFAKNMYELHKKVSPNELILG 204
Query: 424 WYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVEEVHDDGTPTSK 603
WY TG + ++ + I+E R PN + + +D ++ + +AY+S + G
Sbjct: 205 WYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRMSIKAYVST-LMGVPGRTMGV 263
Query: 604 TFEHVTSEIXXXXXXXXXXXHLLRDI--KDTTVGTLSQRITNQVHGLKG-LNSKLLDIRS 774
F +T + +++ + +G S QV G + L +
Sbjct: 264 MFTPLTVKYTYYDTERIGVDLIMKTCFSPNRVIGLSSD--LQQVGGASARIQDALSTVLQ 321
Query: 775 YLEKVATGKLPINHQIIYQLQDVFNLLPDVSLQEFVKAFYLKTNDQMVVVYLASLIRSVV 954
Y E V +GK+ ++ + L + N +P + ++F ND ++V YLA+L +S +
Sbjct: 322 YAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPEDFETMLNSNINDLLMVTYLANLTQSQI 381
Query: 955 ALHNLINN 978
AL+ + N
Sbjct: 382 ALNEKLVN 389
>ref|XP_591540.2| PREDICTED: eukaryotic translation initiation factor 3, subunit 5
epsilon, 47kDa isoform 1 [Bos taurus].
Length = 390
Score = 94.7 bits (234), Expect = 2e-19
Identities = 66/248 (26%), Positives = 122/248 (49%), Gaps = 3/248 (1%)
Frame = +1
Query: 244 RVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFKKVNARERIVG 423
RV+G LLG+ K ++V+N F+VP +E + + +V D ++ +NMY + KKV+ E I+G
Sbjct: 148 RVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAV---DMEFAKNMYELHKKVSPNELILG 204
Query: 424 WYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVEEVHDDGTPTSK 603
WY TG + ++ + I+E R PN + + +D ++ + +AY+S + G
Sbjct: 205 WYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRMSIKAYVST-LMGVPGRTMGV 263
Query: 604 TFEHVTSEIXXXXXXXXXXXHLLRDI--KDTTVGTLSQRITNQVHGLKG-LNSKLLDIRS 774
F +T + +++ + +G S QV G + L +
Sbjct: 264 MFTPLTVKYTYYDTERIGVDLIMKTCFSPNRVIGLSSD--LQQVGGASARIQDALSTVLQ 321
Query: 775 YLEKVATGKLPINHQIIYQLQDVFNLLPDVSLQEFVKAFYLKTNDQMVVVYLASLIRSVV 954
Y E V +GK+ ++ + L + N +P + ++F ND ++V YLA+L +S +
Sbjct: 322 YAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPEDFETMLNSNINDLLMVTYLANLTQSQI 381
Query: 955 ALHNLINN 978
AL+ + N
Sbjct: 382 ALNEKLVN 389
>ref|NP_001095433.1| COP9 signalosome complex subunit 6 [Bos taurus].
Length = 324
Score = 76.3 bits (186), Expect = 6e-14
Identities = 58/261 (22%), Positives = 123/261 (47%), Gaps = 4/261 (1%)
Frame = +1
Query: 205 DHFNRI-GKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMY 381
DH+ R+ + G +V+G L+G + + ++V NSF + ++ +D +Y
Sbjct: 50 DHWIRMRSQEGRPMQVIGALIGKQEGRNIEVMNSFELLSHTVEEKI---IIDKEYYYTKE 106
Query: 382 GMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYI 561
FK+V +GWY TG +DI +++ + + + + ++ K LP +
Sbjct: 107 EQFKQVFKELDFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVFE 166
Query: 562 SVEEVHDDGTPTSKTFEHVTSEIXXXXXXXXXXXHLLRDIKDTTVG---TLSQRITNQVH 732
SV ++ + + F +T + H+ R + T G T+++ + Q
Sbjct: 167 SVIDIING--EATMLFAELTYTLATEEAERIGVDHVAR-MTATGSGENSTVAEHLIAQHS 223
Query: 733 GLKGLNSKLLDIRSYLEKVATGKLPINHQIIYQLQDVFNLLPDVSLQEFVKAFYLKTNDQ 912
+K L+S++ I Y++ G++P NH+I+ + + + LP +S +F FY + ND
Sbjct: 224 AIKMLHSRVKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLSTDKFKTDFYDQCNDV 283
Query: 913 MVVVYLASLIRSVVALHNLIN 975
++ YL ++ ++ ++ +N
Sbjct: 284 GLMAYLGTITKTCNTMNQFVN 304
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,222,039
Number of extensions: 991228
Number of successful extensions: 2871
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2862
Number of HSP's successfully gapped: 4
Length of query: 439
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 334
Effective length of database: 14,207,134
Effective search space: 4745182756
Effective search space used: 4745182756
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012705
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012705
(1318 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536802.1| PREDICTED: similar to 26S proteasome non-ATPase... 519 e-147
Alignment gi|XP_863153.1| PREDICTED: similar to 26S proteasome non-ATPase... 152 5e-37
Alignment gi|XP_534044.2| PREDICTED: similar to eukaryotic translation in... 85 1e-16
Alignment gi|XP_536866.2| PREDICTED: similar to COP9 signalosome subunit ... 77 4e-14
Alignment gi|XP_860298.1| PREDICTED: similar to COP9 signalosome subunit ... 75 1e-13
Alignment gi|XP_860259.1| PREDICTED: similar to COP9 signalosome subunit ... 68 2e-11
>ref|XP_536802.1| PREDICTED: similar to 26S proteasome non-ATPase regulatory subunit
7 (26S proteasome regulatory subunit rpn8) (26S
proteasome regulatory subunit S12) (Proteasome subunit
p40) (Mov34 protein homolog) isoform 1 [Canis
familiaris].
Length = 324
Score = 519 bits (1336), Expect = e-147
Identities = 262/285 (91%), Positives = 262/285 (91%)
Frame = +1
Query: 145 MPELAVQKXXXXXXXXXXXXDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDE 324
MPELAVQK DHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDE
Sbjct: 1 MPELAVQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDE 60
Query: 325 DDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSV 504
DDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSV
Sbjct: 61 DDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSV 120
Query: 505 LVIIDVKPKDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEIXXXXXXXXXXXHLLRDIK 684
LVIIDVKPKDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEI HLLRDIK
Sbjct: 121 LVIIDVKPKDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLLRDIK 180
Query: 685 DTTVGTLSQRITNQVHGLKGLNSKLLDIRSYLEKVATGKLPINHQIIYQLQDVFNLLPDV 864
DTTVGTLSQRITNQVHGLKGLNSKLLDIRSYLEKVATGKLPINHQIIYQLQDVFNLLPDV
Sbjct: 181 DTTVGTLSQRITNQVHGLKGLNSKLLDIRSYLEKVATGKLPINHQIIYQLQDVFNLLPDV 240
Query: 865 SLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHNLINNKIANRDA 999
SLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHNLINNKIANRDA
Sbjct: 241 SLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHNLINNKIANRDA 285
>ref|XP_863153.1| PREDICTED: similar to 26S proteasome non-ATPase regulatory subunit
7 (26S proteasome regulatory subunit rpn8) (26S
proteasome regulatory subunit S12) (Proteasome subunit
p40) (Mov34 protein) isoform 2 [Canis familiaris].
Length = 89
Score = 152 bits (385), Expect = 5e-37
Identities = 74/86 (86%), Positives = 74/86 (86%)
Frame = +1
Query: 145 MPELAVQKXXXXXXXXXXXXDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDE 324
MPELAVQK DHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDE
Sbjct: 1 MPELAVQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDE 60
Query: 325 DDKDDSVWFLDHDYLENMYGMFKKVN 402
DDKDDSVWFLDHDYLENMYGMFKKVN
Sbjct: 61 DDKDDSVWFLDHDYLENMYGMFKKVN 86
>ref|XP_534044.2| PREDICTED: similar to eukaryotic translation initiation factor 3,
subunit 5 epsilon, 47kDa [Canis familiaris].
Length = 265
Score = 85.1 bits (209), Expect = 1e-16
Identities = 62/243 (25%), Positives = 116/243 (47%), Gaps = 3/243 (1%)
Frame = +1
Query: 259 LLGSWQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTG 438
L G+ K ++V+N F+VP +E + + +V D ++ +NMY + KKV+ E I+GWY TG
Sbjct: 28 LTGTVDKHSVEVTNCFSVPHNESEDEVAV---DMEFAKNMYELHKKVSPNELILGWYATG 84
Query: 439 PKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVEEVHDDGTPTSKTFEHV 618
+ ++ + I+E R PN + + +D ++ + +AY+S + G F +
Sbjct: 85 HDITEHSVLIHEYYSRKAPNPIHLTVDTSLQNGRMSIKAYVST-LMGVPGRTMGVMFTPL 143
Query: 619 TSEIXXXXXXXXXXXHLLRDI--KDTTVGTLSQRITNQVHGLKG-LNSKLLDIRSYLEKV 789
T + +++ + +G S QV G + L + Y E V
Sbjct: 144 TVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSD--LQQVGGASARIQDALSTVLQYAEDV 201
Query: 790 ATGKLPINHQIIYQLQDVFNLLPDVSLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHNL 969
+GK+ ++ + L + N +P + +F ND ++V YLA+L +S +AL+
Sbjct: 202 LSGKVSADNTVGRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQIALNEK 261
Query: 970 INN 978
+ N
Sbjct: 262 LVN 264
>ref|XP_536866.2| PREDICTED: similar to COP9 signalosome subunit 6 isoform 1 [Canis
familiaris].
Length = 321
Score = 77.0 bits (188), Expect = 4e-14
Identities = 58/261 (22%), Positives = 123/261 (47%), Gaps = 4/261 (1%)
Frame = +1
Query: 205 DHFNRI-GKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMY 381
DH+ R+ + G +V+G L+G + + ++V NSF + ++ +D +Y
Sbjct: 47 DHWIRMRSQEGRPMQVIGALIGKQEGRNIEVMNSFELLSHTVEEKI---IIDKEYYYTKE 103
Query: 382 GMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYI 561
FK+V +GWY TG +DI +++ + + + + ++ K LP +
Sbjct: 104 EQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVFE 163
Query: 562 SVEEVHDDGTPTSKTFEHVTSEIXXXXXXXXXXXHLLRDIKDTTVG---TLSQRITNQVH 732
SV ++ + + F +T + H+ R + T G T+++ + Q
Sbjct: 164 SVIDIING--EATMLFAELTYTLATEEAERIGVDHVAR-MTATGSGENSTVAEHLIAQHS 220
Query: 733 GLKGLNSKLLDIRSYLEKVATGKLPINHQIIYQLQDVFNLLPDVSLQEFVKAFYLKTNDQ 912
+K L+S++ I Y++ G++P NH+I+ + + + LP +S +F FY + ND
Sbjct: 221 AIKMLHSRVKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLSTDKFKTDFYDQCNDV 280
Query: 913 MVVVYLASLIRSVVALHNLIN 975
++ YL ++ ++ ++ +N
Sbjct: 281 GLMAYLGTITKTCNTMNQFVN 301
>ref|XP_860298.1| PREDICTED: similar to COP9 signalosome subunit 6 isoform 3 [Canis
familiaris].
Length = 315
Score = 75.1 bits (183), Expect = 1e-13
Identities = 60/268 (22%), Positives = 125/268 (46%), Gaps = 11/268 (4%)
Frame = +1
Query: 205 DHFNRI-GKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMY 381
DH+ R+ + G +V+G L+G + + ++V NSF + ++ +D +Y
Sbjct: 34 DHWIRMRSQEGRPMQVIGALIGKQEGRNIEVMNSFELLSHTVEEKI---IIDKEYYYTKE 90
Query: 382 GMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVII-------DVKPKDLG 540
FK+V +GWY TG +DI +++ + + + + + D+ P L
Sbjct: 91 EQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLSPVALQ 150
Query: 541 LPTEAYISVEEVHDDGTPTSKTFEHVTSEIXXXXXXXXXXXHLLRDIKDTTVG---TLSQ 711
LP + SV ++ + + F +T + H+ R + T G T+++
Sbjct: 151 LPVSVFESVIDIING--EATMLFAELTYTLATEEAERIGVDHVAR-MTATGSGENSTVAE 207
Query: 712 RITNQVHGLKGLNSKLLDIRSYLEKVATGKLPINHQIIYQLQDVFNLLPDVSLQEFVKAF 891
+ Q +K L+S++ I Y++ G++P NH+I+ + + + LP +S +F F
Sbjct: 208 HLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLSTDKFKTDF 267
Query: 892 YLKTNDQMVVVYLASLIRSVVALHNLIN 975
Y + ND ++ YL ++ ++ ++ +N
Sbjct: 268 YDQCNDVGLMAYLGTITKTCNTMNQFVN 295
>ref|XP_860259.1| PREDICTED: similar to COP9 signalosome subunit 6 isoform 2 [Canis
familiaris].
Length = 292
Score = 67.8 bits (164), Expect = 2e-11
Identities = 57/261 (21%), Positives = 117/261 (44%), Gaps = 4/261 (1%)
Frame = +1
Query: 205 DHFNRI-GKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMY 381
DH+ R+ + G +V+G L+G + + ++V NSF + ++ +D +Y
Sbjct: 34 DHWIRMRSQEGRPMQVIGALIGKQEGRNIEVMNSFELLSHTVEEKI---IIDKEYYYTKE 90
Query: 382 GMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYI 561
FK+V +GWY TG +DI +++ + + + + ++ K
Sbjct: 91 EQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTK---------- 140
Query: 562 SVEEVHDDGTPTSKTFEHVTSEIXXXXXXXXXXXHLLRDIKDTTVG---TLSQRITNQVH 732
H D T F +T + H+ R + T G T+++ + Q
Sbjct: 141 -----HTDAT---MLFAELTYTLATEEAERIGVDHVAR-MTATGSGENSTVAEHLIAQHS 191
Query: 733 GLKGLNSKLLDIRSYLEKVATGKLPINHQIIYQLQDVFNLLPDVSLQEFVKAFYLKTNDQ 912
+K L+S++ I Y++ G++P NH+I+ + + + LP +S +F FY + ND
Sbjct: 192 AIKMLHSRVKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLSTDKFKTDFYDQCNDV 251
Query: 913 MVVVYLASLIRSVVALHNLIN 975
++ YL ++ ++ ++ +N
Sbjct: 252 GLMAYLGTITKTCNTMNQFVN 272
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,407,292
Number of extensions: 909284
Number of successful extensions: 2949
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2943
Number of HSP's successfully gapped: 6
Length of query: 439
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 333
Effective length of database: 15,340,888
Effective search space: 5108515704
Effective search space used: 5108515704
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012705
(1318 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003360813.1| PREDICTED: 26S proteasome non-ATPase regulat... 511 e-145
Alignment gi|NP_001098769.1| COP9 signalosome complex subunit 6 [Sus scro... 77 2e-14
>ref|XP_003360813.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 [Sus
scrofa].
Length = 324
Score = 511 bits (1317), Expect = e-145
Identities = 260/285 (91%), Positives = 260/285 (91%)
Frame = +1
Query: 145 MPELAVQKXXXXXXXXXXXXDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDE 324
M ELAVQK DHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDE
Sbjct: 1 MAELAVQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDE 60
Query: 325 DDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSV 504
DDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSV
Sbjct: 61 DDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSV 120
Query: 505 LVIIDVKPKDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEIXXXXXXXXXXXHLLRDIK 684
LVIIDVKPKDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEI LLRDIK
Sbjct: 121 LVIIDVKPKDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEIGAEEAEEVGVEILLRDIK 180
Query: 685 DTTVGTLSQRITNQVHGLKGLNSKLLDIRSYLEKVATGKLPINHQIIYQLQDVFNLLPDV 864
DTTVGTLSQRITNQVHGLKGLNSKLLDIRSYLEKVATGKLPINHQIIYQLQDVFNLLPDV
Sbjct: 181 DTTVGTLSQRITNQVHGLKGLNSKLLDIRSYLEKVATGKLPINHQIIYQLQDVFNLLPDV 240
Query: 865 SLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHNLINNKIANRDA 999
SLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHNLINNKIANRDA
Sbjct: 241 SLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHNLINNKIANRDA 285
>ref|NP_001098769.1| COP9 signalosome complex subunit 6 [Sus scrofa].
Length = 323
Score = 77.0 bits (188), Expect = 2e-14
Identities = 58/261 (22%), Positives = 123/261 (47%), Gaps = 4/261 (1%)
Frame = +1
Query: 205 DHFNRI-GKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMY 381
DH+ R+ + G +V+G L+G + + ++V NSF + ++ +D +Y
Sbjct: 49 DHWIRMRSQEGRPMQVIGALIGKQEGRNIEVMNSFELLSHTVEEKI---IIDKEYYYTKE 105
Query: 382 GMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYI 561
FK+V +GWY TG +DI +++ + + + + ++ K LP +
Sbjct: 106 EQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVFE 165
Query: 562 SVEEVHDDGTPTSKTFEHVTSEIXXXXXXXXXXXHLLRDIKDTTVG---TLSQRITNQVH 732
SV ++ + + F +T + H+ R + T G T+++ + Q
Sbjct: 166 SVIDIING--EATMLFAELTYTLATEEAERIGVDHVAR-MTATGSGENSTVAEHLIAQHS 222
Query: 733 GLKGLNSKLLDIRSYLEKVATGKLPINHQIIYQLQDVFNLLPDVSLQEFVKAFYLKTNDQ 912
+K L+S++ I Y++ G++P NH+I+ + + + LP +S +F FY + ND
Sbjct: 223 AIKMLHSRVKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLSTDKFKTDFYDQCNDV 282
Query: 913 MVVVYLASLIRSVVALHNLIN 975
++ YL ++ ++ ++ +N
Sbjct: 283 GLMAYLGTITKTCNTMNQFVN 303
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,263,075
Number of extensions: 805958
Number of successful extensions: 1957
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1951
Number of HSP's successfully gapped: 2
Length of query: 439
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 337
Effective length of database: 8,804,438
Effective search space: 2967095606
Effective search space used: 2967095606
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012705
(1318 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034947.1| 26S proteasome non-ATPase regulatory subunit 7 ... 516 e-146
Alignment gi|NP_079620.2| eukaryotic translation initiation factor 3 subu... 92 7e-19
Alignment gi|NP_036132.1| COP9 signalosome complex subunit 6 [Mus musculu... 77 3e-14
>ref|NP_034947.1| 26S proteasome non-ATPase regulatory subunit 7 [Mus musculus].
Length = 321
Score = 516 bits (1328), Expect = e-146
Identities = 260/285 (91%), Positives = 261/285 (91%)
Frame = +1
Query: 145 MPELAVQKXXXXXXXXXXXXDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDE 324
MPELAVQK DHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDE
Sbjct: 1 MPELAVQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDE 60
Query: 325 DDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSV 504
DDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSV
Sbjct: 61 DDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSV 120
Query: 505 LVIIDVKPKDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEIXXXXXXXXXXXHLLRDIK 684
LVIIDVKPKDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEI HLLRDIK
Sbjct: 121 LVIIDVKPKDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLLRDIK 180
Query: 685 DTTVGTLSQRITNQVHGLKGLNSKLLDIRSYLEKVATGKLPINHQIIYQLQDVFNLLPDV 864
DTTVGTLSQRITNQVHGLKGLNSKLLDIRSYLEKVA+GKLPINHQIIYQLQDVFNLLPD
Sbjct: 181 DTTVGTLSQRITNQVHGLKGLNSKLLDIRSYLEKVASGKLPINHQIIYQLQDVFNLLPDA 240
Query: 865 SLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHNLINNKIANRDA 999
SLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHNLINNKIANRDA
Sbjct: 241 SLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHNLINNKIANRDA 285
>ref|NP_079620.2| eukaryotic translation initiation factor 3 subunit F [Mus
musculus].
Length = 361
Score = 92.4 bits (228), Expect = 7e-19
Identities = 66/248 (26%), Positives = 120/248 (48%), Gaps = 3/248 (1%)
Frame = +1
Query: 244 RVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFKKVNARERIVG 423
RV+G LLG+ K ++V+N F+VP +E + + +V D ++ +NMY + KKV+ E I+G
Sbjct: 119 RVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAV---DMEFAKNMYELHKKVSPNELILG 175
Query: 424 WYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVEEVHDDGTPTSK 603
WY TG + ++ + I+E R PN + + +D + + +AY+S + G
Sbjct: 176 WYATGHDITEHSVLIHEYYSREAPNPIHLTVDTGLQHGRMSIKAYVST-LMGVPGRTMGV 234
Query: 604 TFEHVTSEIXXXXXXXXXXXHLLRDI--KDTTVGTLSQRITNQVHGLKG-LNSKLLDIRS 774
F +T + +++ + +G S QV G + L +
Sbjct: 235 MFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSD--LQQVGGASARIQDALSTVLQ 292
Query: 775 YLEKVATGKLPINHQIIYQLQDVFNLLPDVSLQEFVKAFYLKTNDQMVVVYLASLIRSVV 954
Y E V +GK+ ++ + L + N +P + +F ND ++V YLA+L +S +
Sbjct: 293 YAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQI 352
Query: 955 ALHNLINN 978
AL+ + N
Sbjct: 353 ALNEKLVN 360
>ref|NP_036132.1| COP9 signalosome complex subunit 6 [Mus musculus].
Length = 324
Score = 77.0 bits (188), Expect = 3e-14
Identities = 58/261 (22%), Positives = 123/261 (47%), Gaps = 4/261 (1%)
Frame = +1
Query: 205 DHFNRI-GKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMY 381
DH+ R+ + G +V+G L+G + + ++V NSF + ++ +D +Y
Sbjct: 50 DHWIRMRSQEGRPMQVIGALIGKQEGRNIEVMNSFELLSHTVEEKI---IIDKEYYYTKE 106
Query: 382 GMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYI 561
FK+V +GWY TG +DI +++ + + + + ++ K LP +
Sbjct: 107 EQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVFE 166
Query: 562 SVEEVHDDGTPTSKTFEHVTSEIXXXXXXXXXXXHLLRDIKDTTVG---TLSQRITNQVH 732
SV ++ + + F +T + H+ R + T G T+++ + Q
Sbjct: 167 SVIDIING--EATMLFAELTYTLATEEAERIGVDHVAR-MTATGSGENSTVAEHLIAQHS 223
Query: 733 GLKGLNSKLLDIRSYLEKVATGKLPINHQIIYQLQDVFNLLPDVSLQEFVKAFYLKTNDQ 912
+K L+S++ I Y++ G++P NH+I+ + + + LP +S +F FY + ND
Sbjct: 224 AIKMLHSRVKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLSTDKFKTDFYDQCNDV 283
Query: 913 MVVVYLASLIRSVVALHNLIN 975
++ YL ++ ++ ++ +N
Sbjct: 284 GLMAYLGTITKTCNTMNQFVN 304
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,843,839
Number of extensions: 759585
Number of successful extensions: 2402
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2398
Number of HSP's successfully gapped: 3
Length of query: 439
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 335
Effective length of database: 12,493,815
Effective search space: 4185428025
Effective search space used: 4185428025
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012705
(1318 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002802.2| 26S proteasome non-ATPase regulatory subunit 7 ... 519 e-147
Alignment gi|NP_003745.1| eukaryotic translation initiation factor 3 subu... 94 3e-19
Alignment gi|NP_006824.2| COP9 signalosome complex subunit 6 [Homo sapien... 77 5e-14
>ref|NP_002802.2| 26S proteasome non-ATPase regulatory subunit 7 [Homo sapiens].
Length = 324
Score = 519 bits (1336), Expect = e-147
Identities = 262/285 (91%), Positives = 262/285 (91%)
Frame = +1
Query: 145 MPELAVQKXXXXXXXXXXXXDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDE 324
MPELAVQK DHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDE
Sbjct: 1 MPELAVQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDE 60
Query: 325 DDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSV 504
DDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSV
Sbjct: 61 DDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSV 120
Query: 505 LVIIDVKPKDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEIXXXXXXXXXXXHLLRDIK 684
LVIIDVKPKDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEI HLLRDIK
Sbjct: 121 LVIIDVKPKDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLLRDIK 180
Query: 685 DTTVGTLSQRITNQVHGLKGLNSKLLDIRSYLEKVATGKLPINHQIIYQLQDVFNLLPDV 864
DTTVGTLSQRITNQVHGLKGLNSKLLDIRSYLEKVATGKLPINHQIIYQLQDVFNLLPDV
Sbjct: 181 DTTVGTLSQRITNQVHGLKGLNSKLLDIRSYLEKVATGKLPINHQIIYQLQDVFNLLPDV 240
Query: 865 SLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHNLINNKIANRDA 999
SLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHNLINNKIANRDA
Sbjct: 241 SLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHNLINNKIANRDA 285
>ref|NP_003745.1| eukaryotic translation initiation factor 3 subunit F [Homo
sapiens].
Length = 357
Score = 94.0 bits (232), Expect = 3e-19
Identities = 66/248 (26%), Positives = 121/248 (48%), Gaps = 3/248 (1%)
Frame = +1
Query: 244 RVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFKKVNARERIVG 423
RV+G LLG+ K ++V+N F+VP +E + + +V D ++ +NMY + KKV+ E I+G
Sbjct: 115 RVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAV---DMEFAKNMYELHKKVSPNELILG 171
Query: 424 WYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVEEVHDDGTPTSK 603
WY TG + ++ + I+E R PN + + +D ++ + +AY+S + G
Sbjct: 172 WYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRMSIKAYVST-LMGVPGRTMGV 230
Query: 604 TFEHVTSEIXXXXXXXXXXXHLLRDI--KDTTVGTLSQRITNQVHGLKG-LNSKLLDIRS 774
F +T + +++ + +G S QV G + L +
Sbjct: 231 MFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSD--LQQVGGASARIQDALSTVLQ 288
Query: 775 YLEKVATGKLPINHQIIYQLQDVFNLLPDVSLQEFVKAFYLKTNDQMVVVYLASLIRSVV 954
Y E V +GK+ ++ + L + N +P + +F ND ++V YLA+L +S +
Sbjct: 289 YAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQI 348
Query: 955 ALHNLINN 978
AL+ + N
Sbjct: 349 ALNEKLVN 356
>ref|NP_006824.2| COP9 signalosome complex subunit 6 [Homo sapiens].
Length = 327
Score = 76.6 bits (187), Expect = 5e-14
Identities = 58/261 (22%), Positives = 123/261 (47%), Gaps = 4/261 (1%)
Frame = +1
Query: 205 DHFNRI-GKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMY 381
DH+ R+ + G +V+G L+G + + ++V NSF + ++ +D +Y
Sbjct: 53 DHWIRMRSQEGRPVQVIGALIGKQEGRNIEVMNSFELLSHTVEEKI---IIDKEYYYTKE 109
Query: 382 GMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYI 561
FK+V +GWY TG +DI +++ + + + + ++ K LP +
Sbjct: 110 EQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVFE 169
Query: 562 SVEEVHDDGTPTSKTFEHVTSEIXXXXXXXXXXXHLLRDIKDTTVG---TLSQRITNQVH 732
SV ++ + + F +T + H+ R + T G T+++ + Q
Sbjct: 170 SVIDIING--EATMLFAELTYTLATEEAERIGVDHVAR-MTATGSGENSTVAEHLIAQHS 226
Query: 733 GLKGLNSKLLDIRSYLEKVATGKLPINHQIIYQLQDVFNLLPDVSLQEFVKAFYLKTNDQ 912
+K L+S++ I Y++ G++P NH+I+ + + + LP +S +F FY + ND
Sbjct: 227 AIKMLHSRVKLILEYVKASEAGEVPFNHEILREAYALCHCLPVLSTDKFKTDFYDQCNDV 286
Query: 913 MVVVYLASLIRSVVALHNLIN 975
++ YL ++ ++ ++ +N
Sbjct: 287 GLMAYLGTITKTCNTMNQFVN 307
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,652,191
Number of extensions: 889770
Number of successful extensions: 2820
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2815
Number of HSP's successfully gapped: 3
Length of query: 439
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 333
Effective length of database: 14,802,980
Effective search space: 4929392340
Effective search space used: 4929392340
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012705
(1318 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL892841.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 646 0.0
>gb|GL892841.1| Sus scrofa unplaced genomic scaffold chrU_scaffold1666
Length = 174307
Score = 646 bits (326), Expect = 0.0
Identities = 326/326 (100%)
Strand = Plus / Minus
Query: 674 gagacatcaaagacactacagtgggcacgctttcccagcggatcacaaaccaagtccacg 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128752 gagacatcaaagacactacagtgggcacgctttcccagcggatcacaaaccaagtccacg 128693
Query: 734 gtttgaagggactcaactccaagcttctggatatcaggagctacctggagaaagtggcca 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128692 gtttgaagggactcaactccaagcttctggatatcaggagctacctggagaaagtggcca 128633
Query: 794 ccggcaagctgcccatcaaccaccagatcatctaccagctgcaggacgtcttcaacctgc 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128632 ccggcaagctgcccatcaaccaccagatcatctaccagctgcaggacgtcttcaacctgc 128573
Query: 854 tgccagatgtcagcctgcaggagtttgtcaaggccttttacctgaagaccaacgaccaga 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128572 tgccagatgtcagcctgcaggagtttgtcaaggccttttacctgaagaccaacgaccaga 128513
Query: 914 tggtggtggtgtatttggcctcactgatccgctccgtcgtcgccttgcacaacctcatca 973
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128512 tggtggtggtgtatttggcctcactgatccgctccgtcgtcgccttgcacaacctcatca 128453
Query: 974 acaacaagatcgccaaccgggacgca 999
||||||||||||||||||||||||||
Sbjct: 128452 acaacaagatcgccaaccgggacgca 128427
Score = 375 bits (189), Expect = e-101
Identities = 195/197 (98%)
Strand = Plus / Minus
Query: 1122 catgtagctttttaatttgtaaattaaaatcttataaactaactcagtgtgccaccagag 1181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128304 catgtagctttttaatttgtaaattaaaatcttataaactaactcagtgtgccaccagag 128245
Query: 1182 ggttcttttcactttaagcgcttgttcccaagctgtgttgatgtgcgctctctggataga 1241
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 128244 ggttcttttcactttaagcgcttgttccaaagctgtgttgatgagcgctctctggataga 128185
Query: 1242 gggactgatcgcacacctaagctgcagccccggctgctgtgattggggatgtgatagctc 1301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128184 gggactgatcgcacacctaagctgcagccccggctgctgtgattggggatgtgatagctc 128125
Query: 1302 aggctgcagcctgtgtg 1318
|||||||||||||||||
Sbjct: 128124 aggctgcagcctgtgtg 128108
Score = 200 bits (101), Expect = 1e-48
Identities = 101/101 (100%)
Strand = Plus / Minus
Query: 403 gccagagaaagaatagtcgggtggtaccacacaggccctaaactgcacaagaatgacatc 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132932 gccagagaaagaatagtcgggtggtaccacacaggccctaaactgcacaagaatgacatc 132873
Query: 463 gccatcaacgagctcatgaagagatactgccctaactcggt 503
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 132872 gccatcaacgagctcatgaagagatactgccctaactcggt 132832
Score = 188 bits (95), Expect = 5e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 309 agtcccttttgatgaagatgacaaagatgattctgtctggtttctagaccatgattattt 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133917 agtcccttttgatgaagatgacaaagatgattctgtctggtttctagaccatgattattt 133858
Query: 369 ggaaaacatgtatggcatgtttaagaaggtcaatg 403
|||||||||||||||||||||||||||||||||||
Sbjct: 133857 ggaaaacatgtatggcatgtttaagaaggtcaatg 133823
Score = 184 bits (93), Expect = 8e-44
Identities = 93/93 (100%)
Strand = Plus / Minus
Query: 218 gaataggcaaggttggaaaccagaagcgtgttgttggtgtgcttttggggtcatggcaaa 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135223 gaataggcaaggttggaaaccagaagcgtgttgttggtgtgcttttggggtcatggcaaa 135164
Query: 278 agaaagtacttgatgtatccaacagttttgcag 310
|||||||||||||||||||||||||||||||||
Sbjct: 135163 agaaagtacttgatgtatccaacagttttgcag 135131
Score = 172 bits (87), Expect = 3e-40
Identities = 90/91 (98%)
Strand = Plus / Minus
Query: 128 gggcggggtgtgtcgcgatgccggagctggctgtgcagaaggtggtggtccaccccctgg 187
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 137512 gggcggggtgtgtcgcgatggcggagctggctgtgcagaaggtggtggtccaccccctgg 137453
Query: 188 tgctgctgagtgtggtggatcatttcaatcg 218
|||||||||||||||||||||||||||||||
Sbjct: 137452 tgctgctgagtgtggtggatcatttcaatcg 137422
Score = 167 bits (84), Expect = 2e-38
Identities = 90/92 (97%)
Strand = Plus / Minus
Query: 583 gatggaactccaacctcgaaaacatttgagcatgtgacgagtgaaatcggagcagaggaa 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129637 gatggaactccaacctcgaaaacatttgagcatgtgacgagtgaaatcggagcagaggaa 129578
Query: 643 gctgaggaagttggagtggaacacttgttacg 674
||||||||||||||||||||| |||||||||
Sbjct: 129577 gctgaggaagttggagtggaaatcttgttacg 129546
Score = 165 bits (83), Expect = 8e-38
Identities = 83/83 (100%)
Strand = Plus / Minus
Query: 501 ggtattagtcatcattgacgtgaagccgaaagacctgggcctgcctacggaagcatatat 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132336 ggtattagtcatcattgacgtgaagccgaaagacctgggcctgcctacggaagcatatat 132277
Query: 561 ttcggtggaagaagttcacgatg 583
|||||||||||||||||||||||
Sbjct: 132276 ttcggtggaagaagttcacgatg 132254
Score = 117 bits (59), Expect = 2e-23
Identities = 59/59 (100%)
Strand = Plus / Minus
Query: 78 ctgccgctctggccgccggcgtttgcgggtcgcggggagcagggcctggcgggcggggt 136
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137672 ctgccgctctggccgccggcgtttgcgggtcgcggggagcagggcctggcgggcggggt 137614
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,542,137
Number of extensions: 270
Number of successful extensions: 270
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 270
Number of HSP's successfully gapped: 9
Length of query: 1318
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1297
Effective length of database: 2,808,413,156
Effective search space: 3642511863332
Effective search space used: 3642511863332
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)