Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012707
(1793 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069271.1| fumarate hydratase, mitochondrial [Bos tauru... 887 0.0
>ref|NP_001069271.1| fumarate hydratase, mitochondrial [Bos taurus].
Length = 510
Score = 887 bits (2292), Expect = 0.0
Identities = 447/471 (94%), Positives = 456/471 (96%)
Frame = +1
Query: 157 NAARMAGQNSFRIEYDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPIPVIKAFGIL 336
NAARMA QNSFRIEYDTFGELKVPNDKYYGAQTVRSTMNFKIGG+TERMPIPVIKAFGIL
Sbjct: 40 NAARMASQNSFRIEYDTFGELKVPNDKYYGAQTVRSTMNFKIGGMTERMPIPVIKAFGIL 99
Query: 337 KRAAAEVNQDYGLDPKIANAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISN 516
KRAAAEVNQDYGLDPKIANAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISN
Sbjct: 100 KRAAAEVNQDYGLDPKIANAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISN 159
Query: 517 RAIEMLGGELGSKKPVHPNDHVNKSQSSNDTFPTAMHIAAAVEVHEALLPGLQKLHDALD 696
RAIE+LGGELGSKKPVHPNDHVNKSQSSNDTFPTAMHIAAA+EVHE LLPGLQKLHDAL+
Sbjct: 160 RAIEILGGELGSKKPVHPNDHVNKSQSSNDTFPTAMHIAAAIEVHEVLLPGLQKLHDALE 219
Query: 697 AKSREFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAITRIKAAMPRIYELXXXXXXX 876
AKS+EF QIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYA TRIKAAMPRIYEL
Sbjct: 220 AKSKEFDQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYATTRIKAAMPRIYELAAGGTAV 279
Query: 877 XXXLNTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIA 1056
LNTRIGFAEKVAAKVA LTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIA
Sbjct: 280 GTGLNTRIGFAEKVAAKVAVLTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIA 339
Query: 1057 NDIRFLGSGPRSGLGELILPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTVGGS 1236
NDIRFLGSGPRSGLGELILPENEPGSSIMPGKVNPTQCEA+TMVAAQVMGNHVAVTVGGS
Sbjct: 340 NDIRFLGSGPRSGLGELILPENEPGSSIMPGKVNPTQCEAMTMVAAQVMGNHVAVTVGGS 399
Query: 1237 NGHFELNVFKPMMIKNVLHSARLLGDAAVSFTENCVVGIQANTERINKLMNESLMLVTAL 1416
NGHFELNVFKPMMIKNVLHSARLLGDA+VSFTENCVVGIQANTERI+KLMNESLMLVTAL
Sbjct: 400 NGHFELNVFKPMMIKNVLHSARLLGDASVSFTENCVVGIQANTERISKLMNESLMLVTAL 459
Query: 1417 NPHIGYDKAAKIAKTAHKNGSTLKATAVELGYLTAEQFDEWVKPKDMLGPK 1569
NPHIGYDKAAKIAKTAHKNGSTLKATA+ELGYLTAEQFDEWVKPKDMLGPK
Sbjct: 460 NPHIGYDKAAKIAKTAHKNGSTLKATAIELGYLTAEQFDEWVKPKDMLGPK 510
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 61,161,324
Number of extensions: 1521203
Number of successful extensions: 4137
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4136
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 489
Effective length of database: 14,107,870
Effective search space: 6898748430
Effective search space used: 6898748430
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012707
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012707
(1793 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_863004.1| PREDICTED: similar to Fumarate hydratase, mitoc... 884 0.0
Alignment gi|XP_537215.1| PREDICTED: similar to Fumarate hydratase, mitoc... 884 0.0
Alignment gi|XP_862979.1| PREDICTED: similar to Fumarate hydratase, mitoc... 613 e-175
>ref|XP_863004.1| PREDICTED: similar to Fumarate hydratase, mitochondrial precursor
(Fumarase) isoform 3 [Canis familiaris].
Length = 508
Score = 884 bits (2284), Expect = 0.0
Identities = 447/471 (94%), Positives = 457/471 (97%)
Frame = +1
Query: 157 NAARMAGQNSFRIEYDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPIPVIKAFGIL 336
+AARMA QNSFRIE+DTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPIPVIKAFGIL
Sbjct: 38 DAARMASQNSFRIEFDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPIPVIKAFGIL 97
Query: 337 KRAAAEVNQDYGLDPKIANAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISN 516
KRAAAEVNQDYGLD KIA AIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISN
Sbjct: 98 KRAAAEVNQDYGLDSKIAEAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISN 157
Query: 517 RAIEMLGGELGSKKPVHPNDHVNKSQSSNDTFPTAMHIAAAVEVHEALLPGLQKLHDALD 696
RAIEMLGGELGSKKPVHPNDHVNKSQSSNDTFPTAMHIAAA+EVHE LLPGLQKLHDAL+
Sbjct: 158 RAIEMLGGELGSKKPVHPNDHVNKSQSSNDTFPTAMHIAAAIEVHEVLLPGLQKLHDALN 217
Query: 697 AKSREFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAITRIKAAMPRIYELXXXXXXX 876
AKS+EFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYA+TRIKAAMPRIYEL
Sbjct: 218 AKSKEFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAMTRIKAAMPRIYELAAGGTAV 277
Query: 877 XXXLNTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIA 1056
LNTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIA
Sbjct: 278 GTGLNTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIA 337
Query: 1057 NDIRFLGSGPRSGLGELILPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTVGGS 1236
NDIRFLGSGPRSGLGELILPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTVGGS
Sbjct: 338 NDIRFLGSGPRSGLGELILPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTVGGS 397
Query: 1237 NGHFELNVFKPMMIKNVLHSARLLGDAAVSFTENCVVGIQANTERINKLMNESLMLVTAL 1416
NGHFELNVFKPMMIKNVLHSARLLGDAAVSFTENCV+GIQANTERI+KLM+ESLMLVTAL
Sbjct: 398 NGHFELNVFKPMMIKNVLHSARLLGDAAVSFTENCVMGIQANTERISKLMSESLMLVTAL 457
Query: 1417 NPHIGYDKAAKIAKTAHKNGSTLKATAVELGYLTAEQFDEWVKPKDMLGPK 1569
NPHIGYDKAAKIAKTAHKNGSTLKATA+ELGYLTAEQFDEWVKPKDMLGPK
Sbjct: 458 NPHIGYDKAAKIAKTAHKNGSTLKATAIELGYLTAEQFDEWVKPKDMLGPK 508
>ref|XP_537215.1| PREDICTED: similar to Fumarate hydratase, mitochondrial precursor
(Fumarase) isoform 1 [Canis familiaris].
Length = 508
Score = 884 bits (2284), Expect = 0.0
Identities = 447/471 (94%), Positives = 457/471 (97%)
Frame = +1
Query: 157 NAARMAGQNSFRIEYDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPIPVIKAFGIL 336
+AARMA QNSFRIE+DTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPIPVIKAFGIL
Sbjct: 38 DAARMASQNSFRIEFDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPIPVIKAFGIL 97
Query: 337 KRAAAEVNQDYGLDPKIANAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISN 516
KRAAAEVNQDYGLD KIA AIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISN
Sbjct: 98 KRAAAEVNQDYGLDSKIAEAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISN 157
Query: 517 RAIEMLGGELGSKKPVHPNDHVNKSQSSNDTFPTAMHIAAAVEVHEALLPGLQKLHDALD 696
RAIEMLGGELGSKKPVHPNDHVNKSQSSNDTFPTAMHIAAA+EVHE LLPGLQKLHDAL+
Sbjct: 158 RAIEMLGGELGSKKPVHPNDHVNKSQSSNDTFPTAMHIAAAIEVHEVLLPGLQKLHDALN 217
Query: 697 AKSREFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAITRIKAAMPRIYELXXXXXXX 876
AKS+EFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYA+TRIKAAMPRIYEL
Sbjct: 218 AKSKEFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAMTRIKAAMPRIYELAAGGTAV 277
Query: 877 XXXLNTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIA 1056
LNTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIA
Sbjct: 278 GTGLNTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIA 337
Query: 1057 NDIRFLGSGPRSGLGELILPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTVGGS 1236
NDIRFLGSGPRSGLGELILPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTVGGS
Sbjct: 338 NDIRFLGSGPRSGLGELILPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTVGGS 397
Query: 1237 NGHFELNVFKPMMIKNVLHSARLLGDAAVSFTENCVVGIQANTERINKLMNESLMLVTAL 1416
NGHFELNVFKPMMIKNVLHSARLLGDAAVSFTENCV+GIQANTERI+KLM+ESLMLVTAL
Sbjct: 398 NGHFELNVFKPMMIKNVLHSARLLGDAAVSFTENCVMGIQANTERISKLMSESLMLVTAL 457
Query: 1417 NPHIGYDKAAKIAKTAHKNGSTLKATAVELGYLTAEQFDEWVKPKDMLGPK 1569
NPHIGYDKAAKIAKTAHKNGSTLKATA+ELGYLTAEQFDEWVKPKDMLGPK
Sbjct: 458 NPHIGYDKAAKIAKTAHKNGSTLKATAIELGYLTAEQFDEWVKPKDMLGPK 508
>ref|XP_862979.1| PREDICTED: similar to Fumarate hydratase, mitochondrial precursor
(Fumarase) isoform 2 [Canis familiaris].
Length = 447
Score = 613 bits (1581), Expect = e-175
Identities = 343/477 (71%), Positives = 358/477 (75%), Gaps = 6/477 (1%)
Frame = +1
Query: 157 NAARMAGQNSFRIEYDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPIPVIKAFGIL 336
+AARMA QNSFRIE+DTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPIPVIKAFGIL
Sbjct: 38 DAARMASQNSFRIEFDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPIPVIKAFGIL 97
Query: 337 KRAAAEVNQDYGLDPKIANAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISN 516
KRAAAEVNQDYGLD KIA E I
Sbjct: 98 KRAAAEVNQDYGLDSKIA-------------------------------------EAIMK 120
Query: 517 RAIEMLGGELGSKKPVHPNDHVNKSQSSNDTFP-----TAMHIAAAVEVHEALLP-GLQK 678
A E+ G+L ND FP T + V+E + ++
Sbjct: 121 AADEVAEGKL------------------NDHFPLVVWQTGSGTQTNMNVNEVISNRAIEM 162
Query: 679 LHDALDAKSREFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAITRIKAAMPRIYELX 858
L L +K H D V QEFSGYVQQVKYA+TRIKAAMPRIYEL
Sbjct: 163 LGGELGSKKP----------VHPNDHV--NKSQEFSGYVQQVKYAMTRIKAAMPRIYELA 210
Query: 859 XXXXXXXXXLNTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTAC 1038
LNTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTAC
Sbjct: 211 AGGTAVGTGLNTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTAC 270
Query: 1039 SLMKIANDIRFLGSGPRSGLGELILPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVA 1218
SLMKIANDIRFLGSGPRSGLGELILPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVA
Sbjct: 271 SLMKIANDIRFLGSGPRSGLGELILPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVA 330
Query: 1219 VTVGGSNGHFELNVFKPMMIKNVLHSARLLGDAAVSFTENCVVGIQANTERINKLMNESL 1398
VTVGGSNGHFELNVFKPMMIKNVLHSARLLGDAAVSFTENCV+GIQANTERI+KLM+ESL
Sbjct: 331 VTVGGSNGHFELNVFKPMMIKNVLHSARLLGDAAVSFTENCVMGIQANTERISKLMSESL 390
Query: 1399 MLVTALNPHIGYDKAAKIAKTAHKNGSTLKATAVELGYLTAEQFDEWVKPKDMLGPK 1569
MLVTALNPHIGYDKAAKIAKTAHKNGSTLKATA+ELGYLTAEQFDEWVKPKDMLGPK
Sbjct: 391 MLVTALNPHIGYDKAAKIAKTAHKNGSTLKATAIELGYLTAEQFDEWVKPKDMLGPK 447
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 63,836,321
Number of extensions: 1563674
Number of successful extensions: 4266
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4259
Number of HSP's successfully gapped: 4
Length of query: 597
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 488
Effective length of database: 15,240,880
Effective search space: 7437549440
Effective search space used: 7437549440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012707
(1793 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230517.1| fumarate hydratase [Sus scrofa]. 904 0.0
>ref|NP_001230517.1| fumarate hydratase [Sus scrofa].
Length = 512
Score = 904 bits (2337), Expect = 0.0
Identities = 460/471 (97%), Positives = 460/471 (97%)
Frame = +1
Query: 157 NAARMAGQNSFRIEYDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPIPVIKAFGIL 336
NAARMA QNSFRIEYDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPIPVIKAFGIL
Sbjct: 42 NAARMASQNSFRIEYDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPIPVIKAFGIL 101
Query: 337 KRAAAEVNQDYGLDPKIANAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISN 516
KRAAAEVNQDYGLDPKIANAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISN
Sbjct: 102 KRAAAEVNQDYGLDPKIANAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISN 161
Query: 517 RAIEMLGGELGSKKPVHPNDHVNKSQSSNDTFPTAMHIAAAVEVHEALLPGLQKLHDALD 696
RAIEMLGGELGSKKPVHPNDHVNKSQSSNDTFPTAMHIAAAVEVHEALLPGLQKLHDALD
Sbjct: 162 RAIEMLGGELGSKKPVHPNDHVNKSQSSNDTFPTAMHIAAAVEVHEALLPGLQKLHDALD 221
Query: 697 AKSREFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAITRIKAAMPRIYELXXXXXXX 876
AKSREFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAITRIKAAMPRIYEL
Sbjct: 222 AKSREFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAITRIKAAMPRIYELAAGGTAV 281
Query: 877 XXXLNTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIA 1056
LNTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIA
Sbjct: 282 GTGLNTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIA 341
Query: 1057 NDIRFLGSGPRSGLGELILPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTVGGS 1236
NDIRFLGSGPRSGLGELILPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTVGGS
Sbjct: 342 NDIRFLGSGPRSGLGELILPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTVGGS 401
Query: 1237 NGHFELNVFKPMMIKNVLHSARLLGDAAVSFTENCVVGIQANTERINKLMNESLMLVTAL 1416
NGHFELNVFKPMMIKNVLHSARLLGDAAVSFTENCVVGIQANTERINKLMNESLMLVTAL
Sbjct: 402 NGHFELNVFKPMMIKNVLHSARLLGDAAVSFTENCVVGIQANTERINKLMNESLMLVTAL 461
Query: 1417 NPHIGYDKAAKIAKTAHKNGSTLKATAVELGYLTAEQFDEWVKPKDMLGPK 1569
NPHIGYDKAAKIAKTAHKNGSTLKATAVELGYLTAEQFDEWVKPKDMLGPK
Sbjct: 462 NPHIGYDKAAKIAKTAHKNGSTLKATAVELGYLTAEQFDEWVKPKDMLGPK 512
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 39,292,415
Number of extensions: 971730
Number of successful extensions: 2657
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2657
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 492
Effective length of database: 8,729,747
Effective search space: 4295035524
Effective search space used: 4295035524
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012707
(1793 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034339.2| fumarate hydratase, mitochondrial precursor [Mu... 873 0.0
>ref|NP_034339.2| fumarate hydratase, mitochondrial precursor [Mus musculus].
Length = 507
Score = 873 bits (2256), Expect = 0.0
Identities = 438/471 (92%), Positives = 452/471 (95%)
Frame = +1
Query: 157 NAARMAGQNSFRIEYDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPIPVIKAFGIL 336
N ARMA QNSFR+E+DTFGELKVP DKYYGAQTVRSTMNFKIGG TERMPIPVI+AFGIL
Sbjct: 37 NVARMASQNSFRVEFDTFGELKVPTDKYYGAQTVRSTMNFKIGGATERMPIPVIQAFGIL 96
Query: 337 KRAAAEVNQDYGLDPKIANAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISN 516
KRAAAEVNQ+YGLDPKIA+AIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISN
Sbjct: 97 KRAAAEVNQEYGLDPKIASAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISN 156
Query: 517 RAIEMLGGELGSKKPVHPNDHVNKSQSSNDTFPTAMHIAAAVEVHEALLPGLQKLHDALD 696
RAIEMLGGELGSKKPVHPNDHVNKSQSSNDTFPTAMHIAAAVEVH+ LLPGLQKLHDAL
Sbjct: 157 RAIEMLGGELGSKKPVHPNDHVNKSQSSNDTFPTAMHIAAAVEVHKVLLPGLQKLHDALS 216
Query: 697 AKSREFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAITRIKAAMPRIYELXXXXXXX 876
AKS+EFAQ+IKIGRTHTQDAVPLTLGQEFSGYVQQV+YA+ RIKAAMPRIYEL
Sbjct: 217 AKSKEFAQVIKIGRTHTQDAVPLTLGQEFSGYVQQVQYAMVRIKAAMPRIYELAAGGTAV 276
Query: 877 XXXLNTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIA 1056
LNTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNT ACSLMKIA
Sbjct: 277 GTGLNTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTAACSLMKIA 336
Query: 1057 NDIRFLGSGPRSGLGELILPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTVGGS 1236
NDIRFLGSGPRSGLGELILPENEPGSSIMPGKVNPTQCEA+TMVAAQVMGNHVAVTVGGS
Sbjct: 337 NDIRFLGSGPRSGLGELILPENEPGSSIMPGKVNPTQCEAMTMVAAQVMGNHVAVTVGGS 396
Query: 1237 NGHFELNVFKPMMIKNVLHSARLLGDAAVSFTENCVVGIQANTERINKLMNESLMLVTAL 1416
NGHFELNVFKPMMIKNVLHSARLLGDA+VSFT+NCVVGIQANTERINKLMNESLMLVTAL
Sbjct: 397 NGHFELNVFKPMMIKNVLHSARLLGDASVSFTDNCVVGIQANTERINKLMNESLMLVTAL 456
Query: 1417 NPHIGYDKAAKIAKTAHKNGSTLKATAVELGYLTAEQFDEWVKPKDMLGPK 1569
NPHIGYDKAAKIAKTAHKNGSTLK TA+ELGYLTAEQFDEWVKPKDMLGPK
Sbjct: 457 NPHIGYDKAAKIAKTAHKNGSTLKETAIELGYLTAEQFDEWVKPKDMLGPK 507
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 53,700,272
Number of extensions: 1322644
Number of successful extensions: 3754
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3754
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 490
Effective length of database: 12,403,707
Effective search space: 6077816430
Effective search space used: 6077816430
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012707
(1793 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000134.2| fumarate hydratase, mitochondrial precursor [Ho... 891 0.0
>ref|NP_000134.2| fumarate hydratase, mitochondrial precursor [Homo sapiens].
Length = 510
Score = 891 bits (2302), Expect = 0.0
Identities = 450/471 (95%), Positives = 456/471 (96%)
Frame = +1
Query: 157 NAARMAGQNSFRIEYDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPIPVIKAFGIL 336
NAARMA QNSFRIEYDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMP PVIKAFGIL
Sbjct: 40 NAARMASQNSFRIEYDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPTPVIKAFGIL 99
Query: 337 KRAAAEVNQDYGLDPKIANAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISN 516
KRAAAEVNQDYGLDPKIANAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISN
Sbjct: 100 KRAAAEVNQDYGLDPKIANAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISN 159
Query: 517 RAIEMLGGELGSKKPVHPNDHVNKSQSSNDTFPTAMHIAAAVEVHEALLPGLQKLHDALD 696
RAIEMLGGELGSK PVHPNDHVNKSQSSNDTFPTAMHIAAA+EVHE LLPGLQKLHDALD
Sbjct: 160 RAIEMLGGELGSKIPVHPNDHVNKSQSSNDTFPTAMHIAAAIEVHEVLLPGLQKLHDALD 219
Query: 697 AKSREFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAITRIKAAMPRIYELXXXXXXX 876
AKS+EFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYA+TRIKAAMPRIYEL
Sbjct: 220 AKSKEFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAMTRIKAAMPRIYELAAGGTAV 279
Query: 877 XXXLNTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIA 1056
LNTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIA
Sbjct: 280 GTGLNTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIA 339
Query: 1057 NDIRFLGSGPRSGLGELILPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTVGGS 1236
NDIRFLGSGPRSGLGELILPENEPGSSIMPGKVNPTQCEA+TMVAAQVMGNHVAVTVGGS
Sbjct: 340 NDIRFLGSGPRSGLGELILPENEPGSSIMPGKVNPTQCEAMTMVAAQVMGNHVAVTVGGS 399
Query: 1237 NGHFELNVFKPMMIKNVLHSARLLGDAAVSFTENCVVGIQANTERINKLMNESLMLVTAL 1416
NGHFELNVFKPMMIKNVLHSARLLGDA+VSFTENCVVGIQANTERINKLMNESLMLVTAL
Sbjct: 400 NGHFELNVFKPMMIKNVLHSARLLGDASVSFTENCVVGIQANTERINKLMNESLMLVTAL 459
Query: 1417 NPHIGYDKAAKIAKTAHKNGSTLKATAVELGYLTAEQFDEWVKPKDMLGPK 1569
NPHIGYDKAAKIAKTAHKNGSTLK TA+ELGYLTAEQFDEWVKPKDMLGPK
Sbjct: 460 NPHIGYDKAAKIAKTAHKNGSTLKETAIELGYLTAEQFDEWVKPKDMLGPK 510
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 62,890,084
Number of extensions: 1557081
Number of successful extensions: 4345
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4344
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 489
Effective length of database: 14,737,052
Effective search space: 7206418428
Effective search space used: 7206418428
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012707
(1793 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr10 599 e-168
>Sscrofa_Chr10
|| Length = 79102373
Score = 599 bits (302), Expect = e-168
Identities = 338/348 (97%), Gaps = 2/348 (0%)
Strand = Plus / Minus
Query: 1428 agggtatgacaaagcagccaagattgctaagactgcacacaaaaatgggtcaaccttaaa 1487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14853186 agggtatgacaaagcagccaagattgctaagactgcacacaaaaatgggtcaaccttaaa 14853127
Query: 1488 ggcaactgctgttgaacttggctatctcacagcagagcagtttgatgagtgggtaaaacc 1547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14853126 ggcaactgctgttgaacttggctatctcacagcagagcagtttgatgagtgggtaaaacc 14853067
Query: 1548 taaggacatgctgggtccaaagtgatttaataaatttgtaataaaaatggccacattgtc 1607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14853066 taaggacatgctgggtccaaagtgatttaataaatttgtaataaaaatggccacattgtc 14853007
Query: 1608 taagtgaagtaaactccttatagtttctaaaacaaaatggatacatatgaagggaaacca 1667
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 14853006 taagtgaagtaaactccttatagttcttaaacaaaaatggatacatatgaagggaaacca 14852947
Query: 1668 gtgtttcctttatctaagagatcagtttgggttggtgtataaccnaaccccaggacatgc 1727
|||||||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||
Sbjct: 14852946 gtgtttcctttatctaggagatcagttt-ggttggtgtataaaccaaccccaggacatgc 14852888
Query: 1728 cacatcccaagtgaatttcaaagtgt-aaatnaaatagtggaagtgta 1774
|||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 14852887 cacatcccaagtgaatttcaaagtgtaaaataaaatagtggaagtgta 14852840
Score = 398 bits (201), Expect = e-108
Identities = 208/209 (99%), Gaps = 1/209 (0%)
Strand = Plus / Minus
Query: 941 caggcttgccttttgtcacagctccaaataaatttgaggctctagctgcccatgatgctt 1000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14857693 caggcttgccttttgtcacagctccaaataaatttgaggctctagctgcccatgatgctt 14857634
Query: 1001 tggttgaactcagtggagccatgaacacgactgcttgcagtctgatgaagatcgcaaatg 1060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14857633 tggttgaactcagtggagccatgaacacgactgcttgcagtctgatgaagatcgcaaatg 14857574
Query: 1061 acattcgttttctggggtctggtccccgctcaggtctgggagaactgatcttgcctgaaa 1120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14857573 acattcgttttctggggtctggtccccgctcaggtctgggagaactgatcttgcctgaaa 14857514
Query: 1121 atgaacc-gggaagcagtatcatgccagg 1148
||||||| |||||||||||||||||||||
Sbjct: 14857513 atgaaccggggaagcagtatcatgccagg 14857485
Score = 371 bits (187), Expect = e-100
Identities = 187/187 (100%)
Strand = Plus / Minus
Query: 592 cagagctcaaatgatacgttccccacggccatgcacattgctgcagcagtggaagttcac 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14861746 cagagctcaaatgatacgttccccacggccatgcacattgctgcagcagtggaagttcac 14861687
Query: 652 gaagcactgctgccaggactgcagaagctacatgatgctctcgatgcaaaatccagggag 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14861686 gaagcactgctgccaggactgcagaagctacatgatgctctcgatgcaaaatccagggag 14861627
Query: 712 tttgcccagatcatcaaaattgggcgcactcatactcaggacgctgtcccactcactctc 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14861626 tttgcccagatcatcaaaattgggcgcactcatactcaggacgctgtcccactcactctc 14861567
Query: 772 gggcagg 778
|||||||
Sbjct: 14861566 gggcagg 14861560
Score = 355 bits (179), Expect = 5e-95
Identities = 179/179 (100%)
Strand = Plus / Minus
Query: 416 aggtagctgaaggtaaattaaatgatcattttcctcttgtggtgtggcagactgggtcag 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14863262 aggtagctgaaggtaaattaaatgatcattttcctcttgtggtgtggcagactgggtcag 14863203
Query: 476 gaacccagacaaatatgaatgtaaatgaagtcattagcaacagggcaattgaaatgctag 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14863202 gaacccagacaaatatgaatgtaaatgaagtcattagcaacagggcaattgaaatgctag 14863143
Query: 536 gaggcgagcttggcagcaagaaacccgttcatcccaacgatcatgttaataaaagccag 594
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14863142 gaggcgagcttggcagcaagaaacccgttcatcccaacgatcatgttaataaaagccag 14863084
Score = 333 bits (168), Expect = 2e-88
Identities = 171/172 (99%)
Strand = Plus / Minus
Query: 1 gcgaccggaagttctcctcaggccgccggcactatggatcgagcgctccggctcctcgcg 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 14879040 gcgaccggaagttctcctcaggccgccagcactatggatcgagcgctccggctcctcgcg 14878981
Query: 61 cgttctcgctgcctctcgcgggttccagcctctgctcccggccccggcccaggcagcagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14878980 cgttctcgctgcctctcgcgggttccagcctctgctcccggccccggcccaggcagcagc 14878921
Query: 121 cctagcggcgtgtcgcgcctcctgctccggcctccgaacgccgctcgaatgg 172
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14878920 cctagcggcgtgtcgcgcctcctgctccggcctccgaacgccgctcgaatgg 14878869
Score = 329 bits (166), Expect = 3e-87
Identities = 169/170 (99%)
Strand = Plus / Minus
Query: 775 caggaatttagtggctatgttcaacaagtgaaatatgcaataacaagaataaaagctgcc 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14859118 caggaatttagtggctatgttcaacaagtgaaatatgcaataacaagaataaaagctgcc 14859059
Query: 835 atgccaagaatctacgagcttgcagctgggggcactgctgttggtactggtttaaatact 894
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 14859058 atgccaagaatctacgagctcgcagctgggggcactgctgttggtactggtttaaatact 14858999
Query: 895 aggattggttttgcagaaaaggtcgctgccaaagtagccgcactcacagg 944
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14858998 aggattggttttgcagaaaaggtcgctgccaaagtagccgcactcacagg 14858949
Score = 293 bits (148), Expect = 2e-76
Identities = 154/156 (98%)
Strand = Plus / Minus
Query: 1275 gattaaaaatgtgttgcactcggccagactgctgggggatgcggctgtttccttcacaga 1334
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14854643 gattaagaatgtgttgcactcggccagactgctgggggatgcggctgtttccttcacaga 14854584
Query: 1335 aaactgcgtggtgggaatccaggccaacaccgaaaggatcaacaagctgatgaatgagtc 1394
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 14854583 aaactgcgtggtgggaatccaggccaacactgaaaggatcaacaagctgatgaatgagtc 14854524
Query: 1395 tctgatgttggtgaccgctcttaaccctcacatagg 1430
||||||||||||||||||||||||||||||||||||
Sbjct: 14854523 tctgatgttggtgaccgctcttaaccctcacatagg 14854488
Score = 262 bits (132), Expect = 6e-67
Identities = 135/136 (99%)
Strand = Plus / Minus
Query: 171 ggccggccagaattctttccggatagagtatgatacctttggtgaactcaaggtcccaaa 230
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14869411 ggccagccagaattctttccggatagagtatgatacctttggtgaactcaaggtcccaaa 14869352
Query: 231 tgataagtattatggtgcccagactgtgagatctacgatgaactttaaaatcggaggcgt 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14869351 tgataagtattatggtgcccagactgtgagatctacgatgaactttaaaatcggaggcgt 14869292
Query: 291 gacggaacgcatgcca 306
||||||||||||||||
Sbjct: 14869291 gacggaacgcatgcca 14869276
Score = 258 bits (130), Expect = 9e-66
Identities = 130/130 (100%)
Strand = Plus / Minus
Query: 1146 aggcaaggtgaaccccacccagtgtgaagcgctgaccatggtcgctgcccaggtcatggg 1205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14855709 aggcaaggtgaaccccacccagtgtgaagcgctgaccatggtcgctgcccaggtcatggg 14855650
Query: 1206 gaatcacgtcgccgtcaccgtcgggggcagcaatggacattttgagttgaatgtgttcaa 1265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14855649 gaatcacgtcgccgtcaccgtcgggggcagcaatggacattttgagttgaatgtgttcaa 14855590
Query: 1266 accaatgatg 1275
||||||||||
Sbjct: 14855589 accaatgatg 14855580
Score = 226 bits (114), Expect = 3e-56
Identities = 114/114 (100%)
Strand = Plus / Minus
Query: 307 atcccagttattaaagcttttgggatcttgaagcgtgcagctgctgaagtaaatcaggat 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14865032 atcccagttattaaagcttttgggatcttgaagcgtgcagctgctgaagtaaatcaggat 14864973
Query: 367 tatggtcttgatccaaagattgctaatgcaataatgaaggcagcagatgaggta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14864972 tatggtcttgatccaaagattgctaatgcaataatgaaggcagcagatgaggta 14864919
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 53,309,419
Number of extensions: 357
Number of successful extensions: 357
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 354
Number of HSP's successfully gapped: 10
Length of query: 1793
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1771
Effective length of database: 2,808,408,574
Effective search space: 4973691584554
Effective search space used: 4973691584554
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)