Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012708
(1278 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069271.1| fumarate hydratase, mitochondrial [Bos tauru... 653 0.0
>ref|NP_001069271.1| fumarate hydratase, mitochondrial [Bos taurus].
Length = 510
Score = 653 bits (1685), Expect = 0.0
Identities = 332/364 (91%), Positives = 340/364 (93%)
Frame = +2
Query: 179 NAARMASQNSFRIEYDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPIPVIKAFGIL 358
NAARMASQNSFRIEYDTFGELKVPNDKYYGAQTVRSTMNFKIGG+TERMPIPVIKAFGIL
Sbjct: 40 NAARMASQNSFRIEYDTFGELKVPNDKYYGAQTVRSTMNFKIGGMTERMPIPVIKAFGIL 99
Query: 359 KRAAAEVNQDYGLDPKIANAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISN 538
KRAAAEVNQDYGLDPKIANAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISN
Sbjct: 100 KRAAAEVNQDYGLDPKIANAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISN 159
Query: 539 RAIEMLGGELGSKKPVHPNDHVNKSQSSNDTFPTAMHIAAAVEVHEALLPGLQKLHDALD 718
RAIE+LGGELGSKKPVHPNDHVNKSQSSNDTFPTAMHIAAA+EVHE LLPGLQKLHDAL+
Sbjct: 160 RAIEILGGELGSKKPVHPNDHVNKSQSSNDTFPTAMHIAAAIEVHEVLLPGLQKLHDALE 219
Query: 719 AKSREFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAITRIKAAMPRIYELXXXXXXX 898
AKS+EF QIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYA TRIKAAMPRIYEL
Sbjct: 220 AKSKEFDQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYATTRIKAAMPRIYELAAGGTAV 279
Query: 899 XXXLNTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIA 1078
LNTRIGFAEKVAAKVA LTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIA
Sbjct: 280 GTGLNTRIGFAEKVAAKVAVLTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIA 339
Query: 1079 NDIRFLGSGPRSGLGELILPENERESSIMPRQVNPTQCEALTMFAAXFMGNHVAITVGGQ 1258
NDIRFLGSGPRSGLGELILPENE SSIMP +VNPTQCEA+TM AA MGNHVA+TVGG
Sbjct: 340 NDIRFLGSGPRSGLGELILPENEPGSSIMPGKVNPTQCEAMTMVAAQVMGNHVAVTVGGS 399
Query: 1259 QWTF 1270
F
Sbjct: 400 NGHF 403
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,764,106
Number of extensions: 1008100
Number of successful extensions: 2945
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2944
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 321
Effective length of database: 14,207,134
Effective search space: 4560490014
Effective search space used: 4560490014
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012708
(1278 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_863004.1| PREDICTED: similar to Fumarate hydratase, mitoc... 652 0.0
Alignment gi|XP_537215.1| PREDICTED: similar to Fumarate hydratase, mitoc... 652 0.0
Alignment gi|XP_862979.1| PREDICTED: similar to Fumarate hydratase, mitoc... 477 e-134
>ref|XP_863004.1| PREDICTED: similar to Fumarate hydratase, mitochondrial precursor
(Fumarase) isoform 3 [Canis familiaris].
Length = 508
Score = 652 bits (1682), Expect = 0.0
Identities = 333/364 (91%), Positives = 341/364 (93%)
Frame = +2
Query: 179 NAARMASQNSFRIEYDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPIPVIKAFGIL 358
+AARMASQNSFRIE+DTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPIPVIKAFGIL
Sbjct: 38 DAARMASQNSFRIEFDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPIPVIKAFGIL 97
Query: 359 KRAAAEVNQDYGLDPKIANAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISN 538
KRAAAEVNQDYGLD KIA AIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISN
Sbjct: 98 KRAAAEVNQDYGLDSKIAEAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISN 157
Query: 539 RAIEMLGGELGSKKPVHPNDHVNKSQSSNDTFPTAMHIAAAVEVHEALLPGLQKLHDALD 718
RAIEMLGGELGSKKPVHPNDHVNKSQSSNDTFPTAMHIAAA+EVHE LLPGLQKLHDAL+
Sbjct: 158 RAIEMLGGELGSKKPVHPNDHVNKSQSSNDTFPTAMHIAAAIEVHEVLLPGLQKLHDALN 217
Query: 719 AKSREFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAITRIKAAMPRIYELXXXXXXX 898
AKS+EFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYA+TRIKAAMPRIYEL
Sbjct: 218 AKSKEFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAMTRIKAAMPRIYELAAGGTAV 277
Query: 899 XXXLNTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIA 1078
LNTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIA
Sbjct: 278 GTGLNTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIA 337
Query: 1079 NDIRFLGSGPRSGLGELILPENERESSIMPRQVNPTQCEALTMFAAXFMGNHVAITVGGQ 1258
NDIRFLGSGPRSGLGELILPENE SSIMP +VNPTQCEALTM AA MGNHVA+TVGG
Sbjct: 338 NDIRFLGSGPRSGLGELILPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTVGGS 397
Query: 1259 QWTF 1270
F
Sbjct: 398 NGHF 401
>ref|XP_537215.1| PREDICTED: similar to Fumarate hydratase, mitochondrial precursor
(Fumarase) isoform 1 [Canis familiaris].
Length = 508
Score = 652 bits (1682), Expect = 0.0
Identities = 333/364 (91%), Positives = 341/364 (93%)
Frame = +2
Query: 179 NAARMASQNSFRIEYDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPIPVIKAFGIL 358
+AARMASQNSFRIE+DTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPIPVIKAFGIL
Sbjct: 38 DAARMASQNSFRIEFDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPIPVIKAFGIL 97
Query: 359 KRAAAEVNQDYGLDPKIANAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISN 538
KRAAAEVNQDYGLD KIA AIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISN
Sbjct: 98 KRAAAEVNQDYGLDSKIAEAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISN 157
Query: 539 RAIEMLGGELGSKKPVHPNDHVNKSQSSNDTFPTAMHIAAAVEVHEALLPGLQKLHDALD 718
RAIEMLGGELGSKKPVHPNDHVNKSQSSNDTFPTAMHIAAA+EVHE LLPGLQKLHDAL+
Sbjct: 158 RAIEMLGGELGSKKPVHPNDHVNKSQSSNDTFPTAMHIAAAIEVHEVLLPGLQKLHDALN 217
Query: 719 AKSREFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAITRIKAAMPRIYELXXXXXXX 898
AKS+EFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYA+TRIKAAMPRIYEL
Sbjct: 218 AKSKEFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAMTRIKAAMPRIYELAAGGTAV 277
Query: 899 XXXLNTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIA 1078
LNTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIA
Sbjct: 278 GTGLNTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIA 337
Query: 1079 NDIRFLGSGPRSGLGELILPENERESSIMPRQVNPTQCEALTMFAAXFMGNHVAITVGGQ 1258
NDIRFLGSGPRSGLGELILPENE SSIMP +VNPTQCEALTM AA MGNHVA+TVGG
Sbjct: 338 NDIRFLGSGPRSGLGELILPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTVGGS 397
Query: 1259 QWTF 1270
F
Sbjct: 398 NGHF 401
>ref|XP_862979.1| PREDICTED: similar to Fumarate hydratase, mitochondrial precursor
(Fumarase) isoform 2 [Canis familiaris].
Length = 447
Score = 477 bits (1227), Expect = e-134
Identities = 261/364 (71%), Positives = 270/364 (74%)
Frame = +2
Query: 179 NAARMASQNSFRIEYDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPIPVIKAFGIL 358
+AARMASQNSFRIE+DTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPIPVIKAFGIL
Sbjct: 38 DAARMASQNSFRIEFDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPIPVIKAFGIL 97
Query: 359 KRAAAEVNQDYGLDPKIANAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISN 538
KRAAAEVNQDYGLD KIA AIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISN
Sbjct: 98 KRAAAEVNQDYGLDSKIAEAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISN 157
Query: 539 RAIEMLGGELGSKKPVHPNDHVNKSQSSNDTFPTAMHIAAAVEVHEALLPGLQKLHDALD 718
RAIEMLGGELGSKKPVHPNDHVNKSQ +
Sbjct: 158 RAIEMLGGELGSKKPVHPNDHVNKSQEFSG------------------------------ 187
Query: 719 AKSREFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAITRIKAAMPRIYELXXXXXXX 898
+ Q +K T + A+P RIYEL
Sbjct: 188 -----YVQQVKYAMTRIKAAMP--------------------------RIYELAAGGTAV 216
Query: 899 XXXLNTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIA 1078
LNTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIA
Sbjct: 217 GTGLNTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIA 276
Query: 1079 NDIRFLGSGPRSGLGELILPENERESSIMPRQVNPTQCEALTMFAAXFMGNHVAITVGGQ 1258
NDIRFLGSGPRSGLGELILPENE SSIMP +VNPTQCEALTM AA MGNHVA+TVGG
Sbjct: 277 NDIRFLGSGPRSGLGELILPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTVGGS 336
Query: 1259 QWTF 1270
F
Sbjct: 337 NGHF 340
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,671,115
Number of extensions: 1042440
Number of successful extensions: 2986
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2978
Number of HSP's successfully gapped: 4
Length of query: 426
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 320
Effective length of database: 15,340,888
Effective search space: 4909084160
Effective search space used: 4909084160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012708
(1278 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230517.1| fumarate hydratase [Sus scrofa]. 667 0.0
>ref|NP_001230517.1| fumarate hydratase [Sus scrofa].
Length = 512
Score = 667 bits (1721), Expect = 0.0
Identities = 342/364 (93%), Positives = 344/364 (94%)
Frame = +2
Query: 179 NAARMASQNSFRIEYDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPIPVIKAFGIL 358
NAARMASQNSFRIEYDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPIPVIKAFGIL
Sbjct: 42 NAARMASQNSFRIEYDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPIPVIKAFGIL 101
Query: 359 KRAAAEVNQDYGLDPKIANAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISN 538
KRAAAEVNQDYGLDPKIANAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISN
Sbjct: 102 KRAAAEVNQDYGLDPKIANAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISN 161
Query: 539 RAIEMLGGELGSKKPVHPNDHVNKSQSSNDTFPTAMHIAAAVEVHEALLPGLQKLHDALD 718
RAIEMLGGELGSKKPVHPNDHVNKSQSSNDTFPTAMHIAAAVEVHEALLPGLQKLHDALD
Sbjct: 162 RAIEMLGGELGSKKPVHPNDHVNKSQSSNDTFPTAMHIAAAVEVHEALLPGLQKLHDALD 221
Query: 719 AKSREFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAITRIKAAMPRIYELXXXXXXX 898
AKSREFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAITRIKAAMPRIYEL
Sbjct: 222 AKSREFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAITRIKAAMPRIYELAAGGTAV 281
Query: 899 XXXLNTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIA 1078
LNTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIA
Sbjct: 282 GTGLNTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIA 341
Query: 1079 NDIRFLGSGPRSGLGELILPENERESSIMPRQVNPTQCEALTMFAAXFMGNHVAITVGGQ 1258
NDIRFLGSGPRSGLGELILPENE SSIMP +VNPTQCEALTM AA MGNHVA+TVGG
Sbjct: 342 NDIRFLGSGPRSGLGELILPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTVGGS 401
Query: 1259 QWTF 1270
F
Sbjct: 402 NGHF 405
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,866,272
Number of extensions: 644955
Number of successful extensions: 1814
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1814
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 324
Effective length of database: 8,804,438
Effective search space: 2852637912
Effective search space used: 2852637912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012708
(1278 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034339.2| fumarate hydratase, mitochondrial precursor [Mu... 640 0.0
>ref|NP_034339.2| fumarate hydratase, mitochondrial precursor [Mus musculus].
Length = 507
Score = 640 bits (1652), Expect = 0.0
Identities = 324/364 (89%), Positives = 337/364 (92%)
Frame = +2
Query: 179 NAARMASQNSFRIEYDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPIPVIKAFGIL 358
N ARMASQNSFR+E+DTFGELKVP DKYYGAQTVRSTMNFKIGG TERMPIPVI+AFGIL
Sbjct: 37 NVARMASQNSFRVEFDTFGELKVPTDKYYGAQTVRSTMNFKIGGATERMPIPVIQAFGIL 96
Query: 359 KRAAAEVNQDYGLDPKIANAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISN 538
KRAAAEVNQ+YGLDPKIA+AIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISN
Sbjct: 97 KRAAAEVNQEYGLDPKIASAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISN 156
Query: 539 RAIEMLGGELGSKKPVHPNDHVNKSQSSNDTFPTAMHIAAAVEVHEALLPGLQKLHDALD 718
RAIEMLGGELGSKKPVHPNDHVNKSQSSNDTFPTAMHIAAAVEVH+ LLPGLQKLHDAL
Sbjct: 157 RAIEMLGGELGSKKPVHPNDHVNKSQSSNDTFPTAMHIAAAVEVHKVLLPGLQKLHDALS 216
Query: 719 AKSREFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAITRIKAAMPRIYELXXXXXXX 898
AKS+EFAQ+IKIGRTHTQDAVPLTLGQEFSGYVQQV+YA+ RIKAAMPRIYEL
Sbjct: 217 AKSKEFAQVIKIGRTHTQDAVPLTLGQEFSGYVQQVQYAMVRIKAAMPRIYELAAGGTAV 276
Query: 899 XXXLNTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIA 1078
LNTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNT ACSLMKIA
Sbjct: 277 GTGLNTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTAACSLMKIA 336
Query: 1079 NDIRFLGSGPRSGLGELILPENERESSIMPRQVNPTQCEALTMFAAXFMGNHVAITVGGQ 1258
NDIRFLGSGPRSGLGELILPENE SSIMP +VNPTQCEA+TM AA MGNHVA+TVGG
Sbjct: 337 NDIRFLGSGPRSGLGELILPENEPGSSIMPGKVNPTQCEAMTMVAAQVMGNHVAVTVGGS 396
Query: 1259 QWTF 1270
F
Sbjct: 397 NGHF 400
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,614,196
Number of extensions: 874663
Number of successful extensions: 2661
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2660
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 322
Effective length of database: 12,493,815
Effective search space: 4023008430
Effective search space used: 4023008430
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012708
(1278 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000134.2| fumarate hydratase, mitochondrial precursor [Ho... 657 0.0
>ref|NP_000134.2| fumarate hydratase, mitochondrial precursor [Homo sapiens].
Length = 510
Score = 657 bits (1695), Expect = 0.0
Identities = 335/364 (92%), Positives = 341/364 (93%)
Frame = +2
Query: 179 NAARMASQNSFRIEYDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPIPVIKAFGIL 358
NAARMASQNSFRIEYDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMP PVIKAFGIL
Sbjct: 40 NAARMASQNSFRIEYDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPTPVIKAFGIL 99
Query: 359 KRAAAEVNQDYGLDPKIANAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISN 538
KRAAAEVNQDYGLDPKIANAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISN
Sbjct: 100 KRAAAEVNQDYGLDPKIANAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISN 159
Query: 539 RAIEMLGGELGSKKPVHPNDHVNKSQSSNDTFPTAMHIAAAVEVHEALLPGLQKLHDALD 718
RAIEMLGGELGSK PVHPNDHVNKSQSSNDTFPTAMHIAAA+EVHE LLPGLQKLHDALD
Sbjct: 160 RAIEMLGGELGSKIPVHPNDHVNKSQSSNDTFPTAMHIAAAIEVHEVLLPGLQKLHDALD 219
Query: 719 AKSREFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAITRIKAAMPRIYELXXXXXXX 898
AKS+EFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYA+TRIKAAMPRIYEL
Sbjct: 220 AKSKEFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAMTRIKAAMPRIYELAAGGTAV 279
Query: 899 XXXLNTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIA 1078
LNTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIA
Sbjct: 280 GTGLNTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIA 339
Query: 1079 NDIRFLGSGPRSGLGELILPENERESSIMPRQVNPTQCEALTMFAAXFMGNHVAITVGGQ 1258
NDIRFLGSGPRSGLGELILPENE SSIMP +VNPTQCEA+TM AA MGNHVA+TVGG
Sbjct: 340 NDIRFLGSGPRSGLGELILPENEPGSSIMPGKVNPTQCEAMTMVAAQVMGNHVAVTVGGS 399
Query: 1259 QWTF 1270
F
Sbjct: 400 NGHF 403
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,958,607
Number of extensions: 1032721
Number of successful extensions: 3108
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3108
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 321
Effective length of database: 14,835,944
Effective search space: 4762338024
Effective search space used: 4762338024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012708
(1278 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr10 385 e-104
>Sscrofa_Chr10
|| Length = 79102373
Score = 385 bits (194), Expect = e-104
Identities = 204/206 (99%), Gaps = 1/206 (0%)
Strand = Plus / Minus
Query: 963 caggcttgccttttgtcacagctccaaataaatttgaggctctagctgcccatgatgctt 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14857693 caggcttgccttttgtcacagctccaaataaatttgaggctctagctgcccatgatgctt 14857634
Query: 1023 tggttgaactcagtggagccatgaacacgactgcttgcagtctgatgaagatcgcaaatg 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14857633 tggttgaactcagtggagccatgaacacgactgcttgcagtctgatgaagatcgcaaatg 14857574
Query: 1083 acattcgttttctggggtctggtccccgctcaggtctgggagaactgatcttgcctgaaa 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14857573 acattcgttttctggggtctggtccccgctcaggtctgggagaactgatcttgcctgaaa 14857514
Query: 1143 atgaa-cgggaaagcagtatcatgcc 1167
||||| |||| |||||||||||||||
Sbjct: 14857513 atgaaccggggaagcagtatcatgcc 14857488
Score = 371 bits (187), Expect = e-100
Identities = 187/187 (100%)
Strand = Plus / Minus
Query: 614 cagagctcaaatgatacgttccccacggccatgcacattgctgcagcagtggaagttcac 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14861746 cagagctcaaatgatacgttccccacggccatgcacattgctgcagcagtggaagttcac 14861687
Query: 674 gaagcactgctgccaggactgcagaagctacatgatgctctcgatgcaaaatccagggag 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14861686 gaagcactgctgccaggactgcagaagctacatgatgctctcgatgcaaaatccagggag 14861627
Query: 734 tttgcccagatcatcaaaattgggcgcactcatactcaggacgctgtcccactcactctc 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14861626 tttgcccagatcatcaaaattgggcgcactcatactcaggacgctgtcccactcactctc 14861567
Query: 794 gggcagg 800
|||||||
Sbjct: 14861566 gggcagg 14861560
Score = 361 bits (182), Expect = 6e-97
Identities = 182/182 (100%)
Strand = Plus / Minus
Query: 13 gcgcggcctagcgaccggaagttctcctcaggccgccagcactatggatcgagcgctccg 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14879050 gcgcggcctagcgaccggaagttctcctcaggccgccagcactatggatcgagcgctccg 14878991
Query: 73 gctcctcgcgcgttctcgctgcctctcgcgggttccagcctctgctcccggccccggccc 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14878990 gctcctcgcgcgttctcgctgcctctcgcgggttccagcctctgctcccggccccggccc 14878931
Query: 133 aggcagcagccctagcggcgtgtcgcgcctcctgctccggcctccgaacgccgctcgaat 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14878930 aggcagcagccctagcggcgtgtcgcgcctcctgctccggcctccgaacgccgctcgaat 14878871
Query: 193 gg 194
||
Sbjct: 14878870 gg 14878869
Score = 355 bits (179), Expect = 4e-95
Identities = 179/179 (100%)
Strand = Plus / Minus
Query: 438 aggtagctgaaggtaaattaaatgatcattttcctcttgtggtgtggcagactgggtcag 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14863262 aggtagctgaaggtaaattaaatgatcattttcctcttgtggtgtggcagactgggtcag 14863203
Query: 498 gaacccagacaaatatgaatgtaaatgaagtcattagcaacagggcaattgaaatgctag 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14863202 gaacccagacaaatatgaatgtaaatgaagtcattagcaacagggcaattgaaatgctag 14863143
Query: 558 gaggcgagcttggcagcaagaaacccgttcatcccaacgatcatgttaataaaagccag 616
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14863142 gaggcgagcttggcagcaagaaacccgttcatcccaacgatcatgttaataaaagccag 14863084
Score = 329 bits (166), Expect = 2e-87
Identities = 169/170 (99%)
Strand = Plus / Minus
Query: 797 caggaatttagtggctatgttcaacaagtgaaatatgcaataacaagaataaaagctgcc 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14859118 caggaatttagtggctatgttcaacaagtgaaatatgcaataacaagaataaaagctgcc 14859059
Query: 857 atgccaagaatctacgagcttgcagctgggggcactgctgttggtactggtttaaatact 916
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 14859058 atgccaagaatctacgagctcgcagctgggggcactgctgttggtactggtttaaatact 14858999
Query: 917 aggattggttttgcagaaaaggtcgctgccaaagtagccgcactcacagg 966
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14858998 aggattggttttgcagaaaaggtcgctgccaaagtagccgcactcacagg 14858949
Score = 270 bits (136), Expect = 2e-69
Identities = 136/136 (100%)
Strand = Plus / Minus
Query: 193 ggccagccagaattctttccggatagagtatgatacctttggtgaactcaaggtcccaaa 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14869411 ggccagccagaattctttccggatagagtatgatacctttggtgaactcaaggtcccaaa 14869352
Query: 253 tgataagtattatggtgcccagactgtgagatctacgatgaactttaaaatcggaggcgt 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14869351 tgataagtattatggtgcccagactgtgagatctacgatgaactttaaaatcggaggcgt 14869292
Query: 313 gacggaacgcatgcca 328
||||||||||||||||
Sbjct: 14869291 gacggaacgcatgcca 14869276
Score = 226 bits (114), Expect = 2e-56
Identities = 114/114 (100%)
Strand = Plus / Minus
Query: 329 atcccagttattaaagcttttgggatcttgaagcgtgcagctgctgaagtaaatcaggat 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14865032 atcccagttattaaagcttttgggatcttgaagcgtgcagctgctgaagtaaatcaggat 14864973
Query: 389 tatggtcttgatccaaagattgctaatgcaataatgaaggcagcagatgaggta 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14864972 tatggtcttgatccaaagattgctaatgcaataatgaaggcagcagatgaggta 14864919
Score = 157 bits (79), Expect = 2e-35
Identities = 100/106 (94%), Gaps = 1/106 (0%)
Strand = Plus / Minus
Query: 1173 aggtgaaccccacccagtgtgaagcgctgaccatgttcgctgccnagttcatggggaatc 1232
||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||
Sbjct: 14855704 aggtgaaccccacccagtgtgaagcgctgaccatggtcgctgcccaggtcatggggaatc 14855645
Query: 1233 acgtcgccatcaccgtcggggggcagcaatggactttttgagttga 1278
|||||||| ||||||||| ||||||||||||||| |||||||||||
Sbjct: 14855644 acgtcgccgtcaccgtcg-ggggcagcaatggacattttgagttga 14855600
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,424,512
Number of extensions: 211
Number of successful extensions: 211
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 8
Length of query: 1278
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1257
Effective length of database: 2,808,413,156
Effective search space: 3530175337092
Effective search space used: 3530175337092
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)