Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012710
(1991 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_777099.1| tumor necrosis factor receptor superfamily memb... 562 e-160
Alignment gi|NP_001137549.1| tumor necrosis factor receptor superfamily m... 125 2e-28
Alignment gi|NP_001096698.1| tumor necrosis factor receptor superfamily m... 79 2e-14
Alignment gi|XP_002699490.1| PREDICTED: tumor necrosis factor receptor su... 65 2e-10
Alignment gi|XP_588001.4| PREDICTED: tumor necrosis factor receptor super... 65 2e-10
Alignment gi|NP_001035580.1| tumor necrosis factor receptor superfamily m... 65 3e-10
Alignment gi|NP_777087.1| tumor necrosis factor receptor superfamily memb... 61 4e-09
Alignment gi|NP_001091525.1| tumor necrosis factor receptor superfamily m... 61 4e-09
Alignment gi|NP_001070379.1| tumor necrosis factor receptor superfamily m... 61 4e-09
Alignment gi|XP_590535.5| PREDICTED: tumor necrosis factor receptor super... 61 4e-09
>ref|NP_777099.1| tumor necrosis factor receptor superfamily member 1A precursor [Bos
taurus].
Length = 471
Score = 562 bits (1449), Expect = e-160
Identities = 286/448 (63%), Positives = 307/448 (68%), Gaps = 23/448 (5%)
Frame = +3
Query: 372 DVYPAGVHGLVLHPGDREKRESLCPQGKYSHPQNRSICCTKCHKGTYLHNDCLGPGLDTD 551
DVYPAGV GLV HPGD EKRES CPQGKY+HPQN +ICCTKCHKGTYL+NDC GPG DTD
Sbjct: 21 DVYPAGVQGLVPHPGDLEKRESPCPQGKYNHPQNSTICCTKCHKGTYLYNDCPGPGRDTD 80
Query: 552 CRECDNGTFTASENHLTQCLSCSKCRSEMSQVEISPCTVDRDTVCGCRKNQYRKYWSETL 731
CR C GT+TA ENHL +CLSCS+CR EM QVEISPC VDRDTVCGCRKNQYR+YW ET
Sbjct: 81 CRVCAPGTYTALENHLRRCLSCSRCRDEMFQVEISPCVVDRDTVCGCRKNQYREYWGETG 140
Query: 732 FQCLNCSLCPNGTVQLPCLEKQDTICNCHSGFFLRDKECVSCVNCKNADCKNLCPATSET 911
F+CLNCSLCPNGTV +PC E+QDTIC+CH GFFL+ +C+SC +CKN +C+ LCP T
Sbjct: 141 FRCLNCSLCPNGTVNIPCQERQDTICHCHMGFFLKGAKCISCHDCKNKECEKLCPTRPST 200
Query: 912 RNDFQDTGTTVLLPLVIFFGLCLAFFLFVGLACRYQRWKPKLYSIICGKSTPVKEGEPEP 1091
D QD GTTVLLPLVI FGLCLA F V LACRYQRWKPKLYSIICG+ST VKEGEPE
Sbjct: 201 GKDSQDPGTTVLLPLVIVFGLCLASFASVVLACRYQRWKPKLYSIICGQSTLVKEGEPEL 260
Query: 1092 LATAPSFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCDWSNI-KVTSPPKEIAPP 1268
L AP F CD SN V SP E APP
Sbjct: 261 LVPAPGFN----------PTTTICFSSTPSSSPVSIPPYISCDRSNFGAVASPSSETAPP 310
Query: 1269 PQGAGPI----------------------XXXXXXXXXXXXXXXKWXXXXXXXXXXPAQL 1382
AGPI KW P QL
Sbjct: 311 HLKAGPILPGPPASTHLCTPGPPASTHLCTPGPPASTHLCTPVQKW---EASAPSAPDQL 367
Query: 1383 ADADPATLYAVVDGVPPTRWKEFVRRLGLSEHEIERLELQNGRCLREAQYSMLAEWRRRT 1562
ADADPATLYAVVDGVPP+RWKE VRRLGLSEHEIERLEL+NGR LREAQYSMLA WRRRT
Sbjct: 368 ADADPATLYAVVDGVPPSRWKELVRRLGLSEHEIERLELENGRHLREAQYSMLAAWRRRT 427
Query: 1563 SRREATLELLGSVLRDMDLLGCLEDIEE 1646
RREATLELLG VLRDMDLLGCLE+IEE
Sbjct: 428 PRREATLELLGRVLRDMDLLGCLENIEE 455
>ref|NP_001137549.1| tumor necrosis factor receptor superfamily member 25 [Bos taurus].
Length = 418
Score = 125 bits (313), Expect = 2e-28
Identities = 115/414 (27%), Positives = 153/414 (36%), Gaps = 19/414 (4%)
Frame = +3
Query: 456 YSHPQNRSI-CCTKCHKGTYLHNDCLGPGLDTDCRECDNGTFTASENHL-TQCLSCSKCR 629
+S P+ + CC C G YL C P C C GTF A ENH T+C C C
Sbjct: 40 HSFPKRSGLGCCKGCPAGHYLKAPCTKPCGAATCLPCPQGTFLARENHYETRCARCQACD 99
Query: 630 SEMSQVEISPCTVDRDTVCGCRKNQYRKYWSE-----TLFQCLNCSLCP--NGTVQLPCL 788
Q+ + C+ DT CGCR + + F+C C+ C + Q PC
Sbjct: 100 ELAPQMALRNCSAVADTHCGCRPGWFMDCMVSQCRHGSPFRCRPCTDCGALHRHTQTPC- 158
Query: 789 EKQDTIC-NCHSGFFLRDKECVSCVNCKNADCKNLCPATSETRNDFQDTGTTVLLPLVIF 965
+DT C C GF+ DK CVSC C C A R F ++
Sbjct: 159 SSRDTHCGTCLPGFYEYDKSCVSCPTSTLGSCPEPCVAVCGWRQMF--------WVQMLV 210
Query: 966 FGLCLAFFLFVGLACRYQRWKPKLYSIICGKS--------TPVKEGEPEPLATAPSFGXX 1121
GL + L L Y R P G + TP++ P + P+
Sbjct: 211 AGLVVPLLLGATLTYTYHRCHP---CKAIGPADDTGVEVWTPLQTTHLSPPDSGPALLVT 267
Query: 1122 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCDWSNIKVTSPPKEIAPPPQGAGPIXXXX 1301
WS ++ S + PPP A P
Sbjct: 268 PSSSEKVCPVHLVGHSCTSGSPQTQEAPCLEATWSWDQLPSRAPGLPPPPSPAPPAG--- 324
Query: 1302 XXXXXXXXXXXKWXXXXXXXXXXPAQLADADPA-TLYAVVDGVPPTRWKEFVRRLGLSEH 1478
+ A P LY V+D VP RWKEF+R LGL E
Sbjct: 325 ------------------------SAAATLQPGPQLYDVMDAVPARRWKEFMRTLGLREA 360
Query: 1479 EIERLELQNGRCLREAQYSMLAEWRRRTSRREATLELLGSVLRDMDLLGCLEDI 1640
EIE +E++ GR R+ QY ML WR+ ++ A L + + L M L GC ED+
Sbjct: 361 EIEAVEVEVGR-FRDQQYEMLKRWRQ---QQHAGLGAVYAALERMGLDGCAEDL 410
>ref|NP_001096698.1| tumor necrosis factor receptor superfamily member 3 [Bos taurus].
Length = 428
Score = 78.6 bits (192), Expect = 2e-14
Identities = 64/260 (24%), Positives = 100/260 (38%), Gaps = 18/260 (6%)
Frame = +3
Query: 390 VHGLVLHPGDREKRESLCPQGKYSHPQNRSICCTKCHKGTYLHNDCLGPGLDTDCRECDN 569
V GL H + +S Q K + +CC++C GT++ C +T C C
Sbjct: 38 VQGLPYHT----ENQSCGDQEKEYYESKLRLCCSRCPPGTHISTKC-SRRQNTVCATCPE 92
Query: 570 GTFTASENHLTQCLSCSKCRSEMSQVEISPCTVDRDTVCGCRKNQYRKYWSETLFQCLNC 749
++ NHL+ C C C + VE++PCT +R C C+ Y +W+ C
Sbjct: 93 KSYNEHWNHLSFCQLCRPCDKMLGFVELTPCTSNRKAQCHCQPGMYCVFWNSECEHCEPL 152
Query: 750 SLCPNGT---VQLPCLEKQDTICNCHSGFFLRDK----ECVSCVNCKNADCKNLCPATSE 908
S CP GT ++ +E C +G F C C++ P T +
Sbjct: 153 SDCPPGTEAELKDEVIEANSNCVPCKAGHFQNTSSPTARCRPHTRCEDQGLVEEAPGTPQ 212
Query: 909 TRNDFQD-------TGT----TVLLPLVIFFGLCLAFFLFVGLACRYQRWKPKLYSIICG 1055
+ ++ GT +LLPLV F L F WK + +C
Sbjct: 213 SDTSCRNPQEPPDMPGTMLVLAILLPLVSFLLLTTVF---------VYTWKS--HPSLCR 261
Query: 1056 KSTPVKEGEPEPLATAPSFG 1115
K + + PE + P+ G
Sbjct: 262 KLGSLLKRHPEGEESNPADG 281
>ref|XP_002699490.1| PREDICTED: tumor necrosis factor receptor superfamily, member 10a
[Bos taurus].
Length = 282
Score = 65.1 bits (157), Expect = 2e-10
Identities = 38/127 (29%), Positives = 58/127 (45%), Gaps = 1/127 (0%)
Frame = +3
Query: 432 ESLCPQGKYSHPQNRSICCTKCHKGTYLHNDCLGPGLDTDCRECDNGTFTASENHLTQCL 611
E+ C G+Y P + S C C G Y+ C +C++GTF A N TQC
Sbjct: 22 ETSCNPGEYEVPGDLS-CSRFCPAGYYVSRPINQDHHIGACSQCESGTFRAHPNEQTQCT 80
Query: 612 SCSKCRSEMSQVEISPCTVDRDTVCGCRKNQYRKYWSETLFQCLNCSLCPNGTVQL-PCL 788
C++CR + V+ T DR+ C C++ ++ + C C+ C + L PC
Sbjct: 81 PCAQCREDQEVVKRCSATSDRE--CQCQQGKFYCDSVDCRESCFRCTRCEGDSAVLQPCN 138
Query: 789 EKQDTIC 809
+TIC
Sbjct: 139 ATSNTIC 145
>ref|XP_588001.4| PREDICTED: tumor necrosis factor receptor superfamily, member 10a
[Bos taurus].
Length = 282
Score = 65.1 bits (157), Expect = 2e-10
Identities = 38/127 (29%), Positives = 58/127 (45%), Gaps = 1/127 (0%)
Frame = +3
Query: 432 ESLCPQGKYSHPQNRSICCTKCHKGTYLHNDCLGPGLDTDCRECDNGTFTASENHLTQCL 611
E+ C G+Y P + S C C G Y+ C +C++GTF A N TQC
Sbjct: 22 ETSCNPGEYEVPGDLS-CSRFCPAGYYVSRPINQDHHIGACSQCESGTFRAHPNEQTQCT 80
Query: 612 SCSKCRSEMSQVEISPCTVDRDTVCGCRKNQYRKYWSETLFQCLNCSLCPNGTVQL-PCL 788
C++CR + V+ T DR+ C C++ ++ + C C+ C + L PC
Sbjct: 81 PCAQCREDQEVVKRCSATSDRE--CQCQQGKFYCDSVDCRESCFRCTRCEGDSAVLQPCN 138
Query: 789 EKQDTIC 809
+TIC
Sbjct: 139 ATSNTIC 145
>ref|NP_001035580.1| tumor necrosis factor receptor superfamily member 1B [Bos taurus].
Length = 459
Score = 64.7 bits (156), Expect = 3e-10
Identities = 47/141 (33%), Positives = 65/141 (46%), Gaps = 9/141 (6%)
Frame = +3
Query: 435 SLCPQGKYSHPQNRSICCTKCHKGTYLHNDCLGPGLDTDCRECDNGTFTASENHLTQCLS 614
S C Q +Y + Q +CC+KC G + + C LDT C C++ T+T N +T C S
Sbjct: 38 SSCRQQEY-YNQKIQMCCSKCPPGYRVQSLC-NMTLDTICASCESSTYTQLWNLVTACFS 95
Query: 615 C-SKCRSEMSQVEISPCTVDRDTVCGCRKNQYRKYWSETLFQCLNCSLC-------PNGT 770
C S+C S+ QVE CT ++ +C C+ W TL + C LC P
Sbjct: 96 CNSRCSSD--QVETQACTTKQNRICTCKPG-----WYCTLGRQEGCRLCVALRKCGPGFG 148
Query: 771 VQLPCLEKQDTIC-NCHSGFF 830
V P + IC C G F
Sbjct: 149 VAKPGTATTNVICAPCGPGTF 169
>ref|NP_777087.1| tumor necrosis factor receptor superfamily member 6 precursor [Bos
taurus].
Length = 323
Score = 60.8 bits (146), Expect = 4e-09
Identities = 36/124 (29%), Positives = 51/124 (41%), Gaps = 1/124 (0%)
Frame = +3
Query: 441 CPQGKYSHPQNRSICCTKCHKGTYLHNDCLGPGLDTDCRECDNGT-FTASENHLTQCLSC 617
C +G Y Q CC C G + DC G +C C G +T +H +C+ C
Sbjct: 45 CQEGLYREHQ---FCCQPCPPGKRKNGDCKRDGDTPECVLCSEGNEYTDKSHHSDKCIRC 101
Query: 618 SKCRSEMSQVEISPCTVDRDTVCGCRKNQYRKYWSETLFQCLNCSLCPNGTVQLPCLEKQ 797
S C E CT R+T C C+ N + S C C+ C +G ++ C
Sbjct: 102 SICDEEHGLEVEQNCTRTRNTKCRCKSNFFCN--SSPCEHCNPCTTCEHGIIE-KCTPTS 158
Query: 798 DTIC 809
+T C
Sbjct: 159 NTKC 162
>ref|NP_001091525.1| tumor necrosis factor receptor superfamily member 11B [Bos taurus].
Length = 402
Score = 60.8 bits (146), Expect = 4e-09
Identities = 47/168 (27%), Positives = 70/168 (41%), Gaps = 16/168 (9%)
Frame = +3
Query: 456 YSHPQNRSICCTKCHKGTYLHNDCLGPGLDTDCRECDNGTFTASENHLTQCLSCSKCRSE 635
Y +R + C KC GT+L C T C C + +T + + +CL CS E
Sbjct: 31 YDPESSRQLMCDKCPPGTFLKQPCTA-RRKTVCAPCPDHYYTDTWHTSDECLYCSPVCKE 89
Query: 636 MSQVEISPCTVDRDTVCGCRKNQYRKYWSETLFQCLNCSLCPNG-TVQLPCLEKQDTIC- 809
+ V+ C+ + VC C + +Y + L CL CP G V P +++T+C
Sbjct: 90 LQYVK-QECSRTHNRVCECEEGRYLE-----LEFCLKHRSCPPGFGVLHPGTPERNTVCK 143
Query: 810 NCHSGFFLRDKE----CVSCVNCK----------NADCKNLCPATSET 911
C GFF + C NC NA N+C +SE+
Sbjct: 144 RCPDGFFSNETSSKAPCRKHTNCSAFGLLLTQKGNATHDNICSGSSES 191
>ref|NP_001070379.1| tumor necrosis factor receptor superfamily member 21 [Bos taurus].
Length = 652
Score = 60.8 bits (146), Expect = 4e-09
Identities = 42/132 (31%), Positives = 56/132 (42%), Gaps = 5/132 (3%)
Frame = +3
Query: 450 GKYSHPQN---RSICCTKCHKGTYLHNDCLGPGLDTDCRECDNGTFTASENHLTQCLSCS 620
GKY H + + C KC GTY+ C L C C GTFT EN + +C CS
Sbjct: 49 GKYHHVDRITGQVLTCDKCPAGTYVSEHCTNISLRV-CSSCPTGTFTRHENGIEKCHECS 107
Query: 621 KCRSEMSQVEISPCTVDRDTVCGCRKNQYRKYWSETLFQCLNCSLCPNG-TVQLPCLEKQ 797
+ R +E PCT D C C ++ + C ++CP G V+ E +
Sbjct: 108 Q-RCPWPMIEKLPCTALTDRECTCPPGMFQSNGT-----CAPHTVCPVGWGVRKKGTEME 161
Query: 798 DTIC-NCHSGFF 830
D C C G F
Sbjct: 162 DVRCKQCARGTF 173
>ref|XP_590535.5| PREDICTED: tumor necrosis factor receptor superfamily, member
21-like [Bos taurus].
Length = 708
Score = 60.8 bits (146), Expect = 4e-09
Identities = 42/132 (31%), Positives = 56/132 (42%), Gaps = 5/132 (3%)
Frame = +3
Query: 450 GKYSHPQN---RSICCTKCHKGTYLHNDCLGPGLDTDCRECDNGTFTASENHLTQCLSCS 620
GKY H + + C KC GTY+ C L C C GTFT EN + +C CS
Sbjct: 112 GKYHHVDRITGQVLTCDKCPAGTYVSEHCTNISLRV-CSSCPTGTFTRHENGIEKCHECS 170
Query: 621 KCRSEMSQVEISPCTVDRDTVCGCRKNQYRKYWSETLFQCLNCSLCPNG-TVQLPCLEKQ 797
+ R +E PCT D C C ++ + C ++CP G V+ E +
Sbjct: 171 Q-RCPWPMIEKLPCTALTDRECTCPPGMFQSNGT-----CAPHTVCPVGWGVRKKGTEME 224
Query: 798 DTIC-NCHSGFF 830
D C C G F
Sbjct: 225 DVRCKQCARGTF 236
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 78,710,585
Number of extensions: 2525219
Number of successful extensions: 16944
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 16440
Number of HSP's successfully gapped: 16
Length of query: 663
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 554
Effective length of database: 14,074,782
Effective search space: 7797429228
Effective search space used: 7797429228
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012710
(1991 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854474.1| PREDICTED: similar to Tumor necrosis factor rec... 549 e-156
Alignment gi|XP_546752.2| PREDICTED: similar to Tumor necrosis factor rec... 128 2e-29
Alignment gi|XP_543855.2| PREDICTED: similar to lymphotoxin beta receptor... 75 2e-13
Alignment gi|XP_867957.1| PREDICTED: similar to lymphotoxin beta receptor... 68 3e-11
Alignment gi|XP_549666.2| PREDICTED: similar to Tumor necrosis factor rec... 67 8e-11
Alignment gi|XP_544562.2| PREDICTED: similar to Tumor necrosis factor rec... 65 3e-10
Alignment gi|XP_539963.1| PREDICTED: similar to Tumor necrosis factor rec... 63 1e-09
Alignment gi|XP_852414.1| PREDICTED: similar to Tumor necrosis factor rec... 60 1e-08
Alignment gi|NP_001002982.1| tumor necrosis factor receptor superfamily m... 54 6e-07
Alignment gi|XP_539146.2| PREDICTED: similar to Tumor necrosis factor rec... 54 7e-07
>ref|XP_854474.1| PREDICTED: similar to Tumor necrosis factor receptor superfamily
member 1A precursor (p60) (TNF-R1) (TNF-RI) (p55)
(CD120a) [Canis familiaris].
Length = 452
Score = 549 bits (1415), Expect = e-156
Identities = 277/427 (64%), Positives = 303/427 (70%), Gaps = 2/427 (0%)
Frame = +3
Query: 372 DVYPAGVHGLVLHPGDREKRESLCPQGKYSHPQNRSICCTKCHKGTYLHNDCLGPGLDTD 551
++YP V LV HP +R KR LCPQGKY HPQ+ SICCTKCHKGTYL+NDC GPGLDTD
Sbjct: 21 EIYPISVTALVPHPRNRVKRAILCPQGKYIHPQDDSICCTKCHKGTYLYNDCPGPGLDTD 80
Query: 552 CRECDNGTFTASENHLTQCLSCSKCRSEMSQVEISPCTVDRDTVCGCRKNQYRKYWSETL 731
CREC+NGTFTASENHL QCLSCSKCR EM+QVEISPCTV RDTVCGCRKNQYR YWSETL
Sbjct: 81 CRECENGTFTASENHLRQCLSCSKCRKEMNQVEISPCTVYRDTVCGCRKNQYRFYWSETL 140
Query: 732 FQCLNCSLCPNGTVQLPCLEKQDTICNCHSGFFLRDKECVSCVNC-KNADCKNLCPATSE 908
FQC NCSLC NGTVQ+ C EKQ+TIC CH+GFFLR+ ECVSCVNC KN +C LC E
Sbjct: 141 FQCNNCSLCLNGTVQISCQEKQNTICTCHAGFFLREHECVSCVNCKKNTECGKLCLPPVE 200
Query: 909 TRNDFQDTGTTVLLPLVIFFGLCLAFFLFVGLACRYQRWKPKLYSIICGKSTPVKEGEPE 1088
T QD G+TVLLPLVI FG+C+ F +GL CRYQR KP+L+SI+CGK TP KEGEPE
Sbjct: 201 TVKVPQDPGSTVLLPLVILFGICVLSF-SIGLMCRYQRQKPRLFSIVCGKPTPTKEGEPE 259
Query: 1089 PLATAPSFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCDWSNIKVTSPPKEIAPP 1268
A+ P F DW N + +E+APP
Sbjct: 260 SRASVPGFS------PTTGFSPVPNPTCTPRSILTPSPTFTPSDWPNGRAAPVSREMAPP 313
Query: 1269 PQGAGPIXXXXXXXXXXXXXXXKWXXXXXXXXXXPAQLAD-ADPATLYAVVDGVPPTRWK 1445
QGAGPI KW P AD ADPATLYAVVDGVPP+RWK
Sbjct: 314 CQGAGPILTSAPASTPIPTPVQKW----EDGTATPRTEADPADPATLYAVVDGVPPSRWK 369
Query: 1446 EFVRRLGLSEHEIERLELQNGRCLREAQYSMLAEWRRRTSRREATLELLGSVLRDMDLLG 1625
EFVRRLGLSEHEIERLELQNGRCLREA YSMLA WRRRT RREATLELLG VLR+M+LLG
Sbjct: 370 EFVRRLGLSEHEIERLELQNGRCLREAHYSMLAAWRRRTPRREATLELLGRVLREMELLG 429
Query: 1626 CLEDIEE 1646
CLEDIEE
Sbjct: 430 CLEDIEE 436
>ref|XP_546752.2| PREDICTED: similar to Tumor necrosis factor receptor superfamily
member 25 precursor (WSL-1 protein) (Apoptosis-mediating
receptor DR3) (Apoptosis-mediating receptor TRAMP) (Death
domain receptor 3) (WSL protein) (Apoptosis inducing
receptor AIR) (Apo-3) (Lym... [Canis familiaris].
Length = 422
Score = 128 bits (322), Expect = 2e-29
Identities = 115/410 (28%), Positives = 150/410 (36%), Gaps = 19/410 (4%)
Frame = +3
Query: 468 QNRSICCTKCHKGTYLHNDCLGPGLDTDCRECDNGTFTASEN-HLTQCLSCSKCRSEMSQ 644
+N CC C G YL CL P C C GTF A EN H T+C C C E+SQ
Sbjct: 49 RNGLFCCKGCPAGHYLKGPCLKPCGPAICLPCPWGTFLARENHHETRCTRCQACDEEVSQ 108
Query: 645 VEISPCTVDRDTVCGCRKNQY-----RKYWSETLFQCLNCSLCP--NGTVQLPCLEKQDT 803
V + C++ DT CGC + + + + F+C CS C + ++PC +
Sbjct: 109 VALKNCSMVADTHCGCEPGWFLECLVKPCKAGSPFRCHPCSDCRALHRHTRVPCSARDSD 168
Query: 804 ICNCHSGFFLRDKECVSCVNCKNADCKNLCPATSETRNDFQDTGTTVLLPLVIFFGLCLA 983
C GF+ CVSC C C R F V+ GL +
Sbjct: 169 CGTCLPGFYEYGNSCVSCPTSTLGSCPEPCVTICGWRQMF--------WVQVLLAGLVVP 220
Query: 984 FFLFVGLACRYQRWKPKLYSIICGKSTPVKEGEPEPLATAPSFGXXXXXXXXXXXXXXXX 1163
L L Y R +P C P E E L +
Sbjct: 221 LLLGATLTYTYHRCQP------CKPMVPTDEAGMEALTLQAT------QLSSRESAHTLL 268
Query: 1164 XXXXXXXXXXXXXXXXXCDWSNIKVTSPPKEIAPPPQGAGPIXXXXXXXXXXXXXXXKWX 1343
W+ SP + AP P+ P W
Sbjct: 269 VPLSSSEKKVRAVQLVGNGWT---PGSPQSQEAPCPEVTWP-----------------WD 308
Query: 1344 XXXXXXXXXPAQLADADPA-----------TLYAVVDGVPPTRWKEFVRRLGLSEHEIER 1490
P + A PA LY V+D VP RWKEFVR LGL E EIE
Sbjct: 309 QMHSRALEPPPPPSPAPPAGSAAATLQPGPQLYDVMDAVPARRWKEFVRTLGLREAEIEA 368
Query: 1491 LELQNGRCLREAQYSMLAEWRRRTSRREATLELLGSVLRDMDLLGCLEDI 1640
+E++ GR R+ QY ML WR+ ++ A L + + L M L GC ED+
Sbjct: 369 VEVEVGR-FRDQQYEMLKRWRQ---QQPAGLGAVYAALERMGLDGCAEDL 414
>ref|XP_543855.2| PREDICTED: similar to lymphotoxin beta receptor isoform 1 [Canis
familiaris].
Length = 421
Score = 75.5 bits (184), Expect = 2e-13
Identities = 65/253 (25%), Positives = 101/253 (39%), Gaps = 21/253 (8%)
Frame = +3
Query: 417 DREKRESLCPQGKYSHPQNRSICCTKCHKGTYLHNDCLGPGLDTDCRECDNGTFTASENH 596
DREK +Y P+++ +CC++C GT++ +C DT C C ++ NH
Sbjct: 45 DREK--------EYYEPKHQ-VCCSRCPPGTHVSVEC-SRSQDTVCAMCPENSYNEHWNH 94
Query: 597 LTQCLSCSKCRSEMSQVEISPCTVDRDTVCGCRKNQYRKYWSETLFQCLNCSLCPNGTVQ 776
L+ C C C + E PCT + T C C+ + +W C S CP GT
Sbjct: 95 LSICQLCRPCDQMLGFEETVPCTSRQKTQCRCQPGMFCVHWDTECVHCEPLSDCPPGTEA 154
Query: 777 LPCLEKQDTICN-----CHSGFFLRDK----ECVSCVNCKNADCKNLCPATSET----RN 917
L + + N C +G F C C+ P T+++ RN
Sbjct: 155 E--LTDEVGVANSNCVPCKAGHFQNTSSPRARCQPHTRCEEQGLVEAVPGTAKSDTSCRN 212
Query: 918 DFQDTGTT-VLLPLVIFFGLCLAFFLFVGLACRYQRWKP---KLYSIIC----GKSTPVK 1073
+ + T ++ L I L FL LAC ++ KL S++ G+ +
Sbjct: 213 PLEHSETPGTVMVLAILLPLASFLFLTTVLACTWKNHPSLCRKLGSLLKRRPEGEESNTA 272
Query: 1074 EGEPEPLATAPSF 1112
+G EP P F
Sbjct: 273 DGSWEPPRVNPHF 285
>ref|XP_867957.1| PREDICTED: similar to lymphotoxin beta receptor isoform 2 [Canis
familiaris].
Length = 267
Score = 68.2 bits (165), Expect = 3e-11
Identities = 36/118 (30%), Positives = 54/118 (45%)
Frame = +3
Query: 417 DREKRESLCPQGKYSHPQNRSICCTKCHKGTYLHNDCLGPGLDTDCRECDNGTFTASENH 596
DREK +Y P+++ +CC++C GT++ +C DT C C ++ NH
Sbjct: 45 DREK--------EYYEPKHQ-VCCSRCPPGTHVSVEC-SRSQDTVCAMCPENSYNEHWNH 94
Query: 597 LTQCLSCSKCRSEMSQVEISPCTVDRDTVCGCRKNQYRKYWSETLFQCLNCSLCPNGT 770
L+ C C C + E PCT + T C C+ + +W C S CP GT
Sbjct: 95 LSICQLCRPCDQMLGFEETVPCTSRQKTQCRCQPGMFCVHWDTECVHCEPLSDCPPGT 152
>ref|XP_549666.2| PREDICTED: similar to Tumor necrosis factor receptor superfamily
member 14 precursor (Herpesvirus entry mediator A) (Tumor
necrosis factor receptor-like 2) (TR2) [Canis
familiaris].
Length = 272
Score = 66.6 bits (161), Expect = 8e-11
Identities = 60/224 (26%), Positives = 89/224 (39%), Gaps = 11/224 (4%)
Frame = +3
Query: 477 SICCTKCHKGTYLHNDCLGPGLDTDCRECDNGTFTASENHLTQCLSCSKCRSEMSQVEIS 656
S CC KC G + C G T C CD GT+TA N L++CL C C M+ V
Sbjct: 51 SECCPKCSPGYRVKEAC-GELTGTVCAPCDPGTYTAHLNGLSECLQCRMCDPAMALVTRQ 109
Query: 657 PCTVDRDTVCGCRKNQYRKYWSETLFQCLNC---SLC-PNGTVQLPCLEKQDTIC-NCHS 821
C+ +TVC C + + SE C+ C + C P V E++DT+C +C
Sbjct: 110 KCSRTENTVCACAQGHF--CISENEDDCVECRPHTPCKPGQRVVARGTEQRDTMCEDCPP 167
Query: 822 GFFLRD---KECVSCVNCKNADCKNLCPATSETRNDFQDTGTTVLLPLVIFFGLCLAFFL 992
G F + ++C C + TS + G ++ + F L + L
Sbjct: 168 GTFSPNGTLEQCQPWTMCSGPFQREAHAGTSSSDVTCSSWGPPLMSSFLGIFVLLVLISL 227
Query: 993 FVGLACRYQR---WKPKLYSIICGKSTPVKEGEPEPLATAPSFG 1115
+ R Q KP+ + + V E A+ P G
Sbjct: 228 CFWMKRRRQHERSTKPRTFQQVPQAPPDVTTVAMEETASMPPAG 271
>ref|XP_544562.2| PREDICTED: similar to Tumor necrosis factor receptor superfamily
member 1B precursor (Tumor necrosis factor receptor 2)
(TNF-R2) (Tumor necrosis factor receptor type II) (p75)
(p80 TNF-alpha receptor) (CD120b) (Etanercept) [Canis
familiaris].
Length = 450
Score = 64.7 bits (156), Expect = 3e-10
Identities = 44/141 (31%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Frame = +3
Query: 435 SLCPQGKYSHPQNRSICCTKCHKGTYLHNDCLGPGLDTDCRECDNGTFTASENHLTQCLS 614
S C Q +Y Q +CC+ C G++ C +T C C+N T+T N + +CLS
Sbjct: 23 SSCQQSEY-FDQRTQMCCSMCPPGSHARLFCTKTS-NTVCARCENSTYTQLWNWVPECLS 80
Query: 615 C-SKCRSEMSQVEISPCTVDRDTVCGCRKNQYRKYWSETLFQCLNCSLC-------PNGT 770
C S+C ++ QVE CT +++ +C C+ W TL + C LC P
Sbjct: 81 CGSRCGAD--QVETQACTREQNRICSCKSG-----WYCTLRRQGGCRLCAPLRRCRPGFG 133
Query: 771 VQLPCLEKQDTIC-NCHSGFF 830
V P D +C C G F
Sbjct: 134 VAKPGTATSDVVCAPCAPGTF 154
>ref|XP_539963.1| PREDICTED: similar to Tumor necrosis factor receptor superfamily
member 21 precursor (TNFR-related death receptor-6)
(Death receptor 6) [Canis familiaris].
Length = 652
Score = 62.8 bits (151), Expect = 1e-09
Identities = 49/166 (29%), Positives = 69/166 (41%), Gaps = 10/166 (6%)
Frame = +3
Query: 450 GKYSHPQNRS---ICCTKCHKGTYLHNDCLGPGLDTDCRECDNGTFTASENHLTQCLSCS 620
GKY H + + C KC GTY+ C L C C GTFT EN + +C CS
Sbjct: 49 GKYHHVDRATGQVLTCDKCPAGTYVSEHCTNRSLRV-CSSCPVGTFTRHENGIEKCHDCS 107
Query: 621 K-CRSEMSQVEISPCTVDRDTVCGCRKNQYRKYWSETLFQCLNCSLCPNG-TVQLPCLEK 794
+ C M VE PC D C C ++ + C ++CP G V+ E
Sbjct: 108 QPCPWPM--VEKLPCAASTDRECACPPGMFQFNGT-----CAPHTVCPVGWGVRKKGTET 160
Query: 795 QDTICNCHSGFFLRD-----KECVSCVNCKNADCKNLCPATSETRN 917
+D C +G D +C + V+C + + + P T E N
Sbjct: 161 EDVRCKQCAGGTYSDVPSSVMKCKAYVDCLSQNLVVIKPGTKEADN 206
>ref|XP_852414.1| PREDICTED: similar to Tumor necrosis factor receptor superfamily
member 21 precursor (TNFR-related death receptor-6)
(Death receptor 6) [Canis familiaris].
Length = 736
Score = 59.7 bits (143), Expect = 1e-08
Identities = 49/166 (29%), Positives = 68/166 (40%), Gaps = 10/166 (6%)
Frame = +3
Query: 450 GKYSHPQNRS---ICCTKCHKGTYLHNDCLGPGLDTDCRECDNGTFTASENHLTQCLSCS 620
GKY H + + C KC GTY+ C L C C GTFT EN + +C CS
Sbjct: 133 GKYHHVDRATGQVLTCDKCPAGTYVSEHCTNTSLRV-CSSCPVGTFTRHENGIEKCHDCS 191
Query: 621 K-CRSEMSQVEISPCTVDRDTVCGCRKNQYRKYWSETLFQCLNCSLCPNG-TVQLPCLEK 794
+ C M VE PC D C C ++ + C ++CP G V+ E
Sbjct: 192 QPCPWPM--VEKLPCAALTDRECACPPGMFQFNGT-----CAPHTVCPVGWGVRKKGTET 244
Query: 795 QDTIC-NCHSGFF----LRDKECVSCVNCKNADCKNLCPATSETRN 917
+D C C G F +C + +C + + + P T E N
Sbjct: 245 EDVRCKQCARGTFSDVPSSVMKCKAYTDCLSQNLVVIKPGTKEADN 290
>ref|NP_001002982.1| tumor necrosis factor receptor superfamily member 5 precursor
[Canis lupus familiaris].
Length = 274
Score = 53.9 bits (128), Expect = 6e-07
Identities = 39/120 (32%), Positives = 49/120 (40%), Gaps = 2/120 (1%)
Frame = +3
Query: 477 SICCTKCHKGTYLHNDCLGPGLDTDCRECDNGTFTASENHLTQCLSCSKCRSEMSQVEIS 656
S CC C G L NDCL +DT+C C G F + N C C +
Sbjct: 35 SQCCNMCPPGEKLVNDCLHT-IDTECTRCQTGEFLDTWNAERHCHQHKYCDPNLGLHVEK 93
Query: 657 PCTVDRDTVCGCRKNQYRKYWSETLFQCLNCSLCPNGT-VQLPCLEKQDTICN-CHSGFF 830
T + DT C C + + + C SLCP G V+ DTIC+ C GFF
Sbjct: 94 EGTSETDTTCTCDEGLH--CTNAACESCTMHSLCPPGLGVKQIATGISDTICDPCPIGFF 151
>ref|XP_539146.2| PREDICTED: similar to Tumor necrosis factor receptor superfamily
member 11B precursor (Osteoprotegerin)
(Osteoclastogenesis inhibitory factor) [Canis
familiaris].
Length = 401
Score = 53.5 bits (127), Expect = 7e-07
Identities = 46/168 (27%), Positives = 64/168 (38%), Gaps = 16/168 (9%)
Frame = +3
Query: 456 YSHPQNRSICCTKCHKGTYLHNDCLGPGLDTDCRECDNGTFTASENHLTQCLSCSKCRSE 635
Y +R + C KC GT L C T C C N +T + +CL C E
Sbjct: 31 YDPETSRQLMCDKCPPGTSLKQHCTAKR-KTVCVPCPNHYYTDLWHTSDECLYCRPVCKE 89
Query: 636 MSQVEISPCTVDRDTVCGCRKNQYRKYWSETLFQCLNCSLCPNGTVQLPC-LEKQDTIC- 809
+ V+ C + VC C + +Y + L CL CP G L +++T+C
Sbjct: 90 LQYVK-QECNRTHNRVCECEEGRYLE-----LEFCLKHRSCPPGFGVLHAGTPERNTVCK 143
Query: 810 NCHSGFFLRDKE----CVSCVNCK----------NADCKNLCPATSET 911
C GFF + C NC NA N+C SE+
Sbjct: 144 RCPDGFFSNETSSKAPCRKHTNCSAFGLLLTQKGNATHDNVCSGNSES 191
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 81,948,587
Number of extensions: 2570772
Number of successful extensions: 17519
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 16939
Number of HSP's successfully gapped: 12
Length of query: 663
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 554
Effective length of database: 15,240,880
Effective search space: 8443447520
Effective search space used: 8443447520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012710
(1991 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999134.1| tumor necrosis factor receptor superfamily memb... 769 0.0
Alignment gi|XP_003127580.1| PREDICTED: tumor necrosis factor receptor su... 88 2e-17
Alignment gi|XP_003355648.1| PREDICTED: hypothetical protein LOC100622819... 86 8e-17
Alignment gi|XP_003126595.1| PREDICTED: tumor necrosis factor receptor su... 75 1e-13
Alignment gi|NP_999004.1| tumor necrosis factor receptor superfamily memb... 69 1e-11
Alignment gi|XP_003353778.1| PREDICTED: hypothetical protein LOC100627067... 62 2e-09
Alignment gi|NP_001090910.2| tumor necrosis factor receptor superfamily m... 61 3e-09
Alignment gi|XP_003128478.1| PREDICTED: LOW QUALITY PROTEIN: tumor necros... 57 5e-08
Alignment gi|XP_003359083.1| PREDICTED: tumor necrosis factor receptor su... 54 2e-07
Alignment gi|XP_001926676.3| PREDICTED: tumor necrosis factor receptor su... 54 2e-07
>ref|NP_999134.1| tumor necrosis factor receptor superfamily member 1A precursor [Sus
scrofa].
Length = 461
Score = 769 bits (1985), Expect = 0.0
Identities = 367/425 (86%), Positives = 367/425 (86%)
Frame = +3
Query: 372 DVYPAGVHGLVLHPGDREKRESLCPQGKYSHPQNRSICCTKCHKGTYLHNDCLGPGLDTD 551
DVYPAGVHGLVLHPGDREKRESLCPQGKYSHPQNRSICCTKCHKGTYLHNDCLGPGLDTD
Sbjct: 21 DVYPAGVHGLVLHPGDREKRESLCPQGKYSHPQNRSICCTKCHKGTYLHNDCLGPGLDTD 80
Query: 552 CRECDNGTFTASENHLTQCLSCSKCRSEMSQVEISPCTVDRDTVCGCRKNQYRKYWSETL 731
CRECDNGTFTASENHLTQCLSCSKCRSEMSQVEISPCTVDRDTVCGCRKNQYRKYWSETL
Sbjct: 81 CRECDNGTFTASENHLTQCLSCSKCRSEMSQVEISPCTVDRDTVCGCRKNQYRKYWSETL 140
Query: 732 FQCLNCSLCPNGTVQLPCLEKQDTICNCHSGFFLRDKECVSCVNCKNADCKNLCPATSET 911
FQCLNCSLCPNGTVQLPCLEKQDTICNCHSGFFLRDKECVSCVNCKNADCKNLCPATSET
Sbjct: 141 FQCLNCSLCPNGTVQLPCLEKQDTICNCHSGFFLRDKECVSCVNCKNADCKNLCPATSET 200
Query: 912 RNDFQDTGTTVLLPLVIFFGLCLAFFLFVGLACRYQRWKPKLYSIICGKSTPVKEGEPEP 1091
RNDFQDTGTTVLLPLVIFFGLCLAFFLFVGLACRYQRWKPKLYSIICGKSTPVKEGEPEP
Sbjct: 201 RNDFQDTGTTVLLPLVIFFGLCLAFFLFVGLACRYQRWKPKLYSIICGKSTPVKEGEPEP 260
Query: 1092 LATAPSFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCDWSNIKVTSPPKEIAPPP 1271
LATAPSFG CDWSNIKVTSPPKEIAPPP
Sbjct: 261 LATAPSFGPITTFSPIPSFSPTTTFSPVPSFSPISSPTFTPCDWSNIKVTSPPKEIAPPP 320
Query: 1272 QGAGPIXXXXXXXXXXXXXXXKWXXXXXXXXXXPAQLADADPATLYAVVDGVPPTRWKEF 1451
QGAGPI KW PAQLADADPATLYAVVDGVPPTRWKEF
Sbjct: 321 QGAGPILPMPPASTPVPTPLPKWGGSAHSAHSAPAQLADADPATLYAVVDGVPPTRWKEF 380
Query: 1452 VRRLGLSEHEIERLELQNGRCLREAQYSMLAEWRRRTSRREATLELLGSVLRDMDLLGCL 1631
VRRLGLSEHEIERLELQNGRCLREAQYSMLAEWRRRTSRREATLELLGSVLRDMDLLGCL
Sbjct: 381 VRRLGLSEHEIERLELQNGRCLREAQYSMLAEWRRRTSRREATLELLGSVLRDMDLLGCL 440
Query: 1632 EDIEE 1646
EDIEE
Sbjct: 441 EDIEE 445
>ref|XP_003127580.1| PREDICTED: tumor necrosis factor receptor superfamily member 25-like
[Sus scrofa].
Length = 415
Score = 88.2 bits (217), Expect = 2e-17
Identities = 66/217 (30%), Positives = 83/217 (38%), Gaps = 8/217 (3%)
Frame = +3
Query: 468 QNRSICCTKCHKGTYLHNDCLGPGLDTDCRECDNGTFTASEN-HLTQCLSCSKCRSEMSQ 644
+N +CC C G YL C P C C GTF A EN H T+C C C + Q
Sbjct: 42 RNGLVCCRGCPAGHYLKAPCTKPCGAATCLPCPQGTFLAWENHHETRCARCQACDEQAPQ 101
Query: 645 VEISPCTVDRDTVCGCRKNQYRK-YWSETL----FQCLNCSLCP--NGTVQLPCLEKQDT 803
V + C+ DT CGCR + + S+ L F+C C+ C + Q PC K
Sbjct: 102 VALKNCSAVADTHCGCRPGWFMECVVSQCLLGSPFRCRRCTDCGALHRHTQEPCSSKDAH 161
Query: 804 ICNCHSGFFLRDKECVSCVNCKNADCKNLCPATSETRNDFQDTGTTVLLPLVIFFGLCLA 983
C GF+ CVSC C C A R+ F V+ GL
Sbjct: 162 CGACLPGFYEHGNSCVSCPTSTLGSCPEPCVAVCGWRHMF--------WVQVLLAGLVAP 213
Query: 984 FFLFVGLACRYQRWKPKLYSIICGKSTPVKEGEPEPL 1094
L L Y+R +P C P E E L
Sbjct: 214 LLLGATLTYTYRRCQP------CKAMVPAGEAGVEAL 244
Score = 69.7 bits (169), Expect = 6e-12
Identities = 39/79 (49%), Positives = 50/79 (63%)
Frame = +3
Query: 1404 LYAVVDGVPPTRWKEFVRRLGLSEHEIERLELQNGRCLREAQYSMLAEWRRRTSRREATL 1583
LY V+D VP RWKEFVR LGL E EIE +E++ GR R+ QY ML WR+ ++ A L
Sbjct: 333 LYDVMDAVPARRWKEFVRTLGLREAEIEAVEVEVGR-FRDQQYEMLKRWRQ---QQPAGL 388
Query: 1584 ELLGSVLRDMDLLGCLEDI 1640
+ + L M L GC ED+
Sbjct: 389 AAVYAALERMGLDGCAEDL 407
>ref|XP_003355648.1| PREDICTED: hypothetical protein LOC100622819 [Sus scrofa].
Length = 248
Score = 85.9 bits (211), Expect = 8e-17
Identities = 41/52 (78%), Positives = 42/52 (80%)
Frame = -3
Query: 348 VAAAGQGRWGGPCPASCGLSLPHQXXXXXXXXXGPRRQSIPSQEEQGPEVPS 193
+AAAGQGRWGGPCPASC LSLPHQ GPRRQSIPSQEEQGPEVPS
Sbjct: 186 LAAAGQGRWGGPCPASCVLSLPHQGSGSGDSDGGPRRQSIPSQEEQGPEVPS 237
>ref|XP_003126595.1| PREDICTED: tumor necrosis factor receptor superfamily member 3-like
[Sus scrofa].
Length = 421
Score = 75.5 bits (184), Expect = 1e-13
Identities = 53/224 (23%), Positives = 91/224 (40%), Gaps = 12/224 (5%)
Frame = +3
Query: 453 KYSHPQNRSICCTKCHKGTYLHNDCLGPGLDTDCRECDNGTFTASENHLTQCLSCSKCRS 632
+Y P++ +CC++C GT++ +C +T C C ++ NHL+ C C C
Sbjct: 49 EYYEPKHH-VCCSRCPPGTHVSAEC-SHDQNTACATCPENSYNEHWNHLSICQLCRPCDQ 106
Query: 633 EMSQVEISPCTVDRDTVCGCRKNQYRKYWSETLFQCLNCSLCPNGT---VQLPCLEKQDT 803
+ +E++PCT C C+ + +W C CP GT ++ E
Sbjct: 107 MLGFMEVTPCTSKHKAQCRCQPGMFCVFWDSECVHCEPLFNCPPGTEAELRDKAGEANRK 166
Query: 804 ICNCHSGFFLRDK----ECVSCVNCKNADCKNLCPATSETRNDFQDTGTTVLLP---LVI 962
C +G F C C++ P T+++ ++ +P LV+
Sbjct: 167 CVPCKAGHFQNSSSPSARCQPHTRCEDQGLVEAAPGTTQSDTTCRNPPDPPKMPGMMLVL 226
Query: 963 FFGLCLAFFLFVG--LACRYQRWKPKLYSIICGKSTPVKEGEPE 1088
L L FFL + LAC + K + +C K + + PE
Sbjct: 227 AILLPLIFFLLIAIILACTW-----KSHPSLCRKLGSLLKRHPE 265
>ref|NP_999004.1| tumor necrosis factor receptor superfamily member 6 precursor [Sus
scrofa].
Length = 332
Score = 68.9 bits (167), Expect = 1e-11
Identities = 39/129 (30%), Positives = 56/129 (43%), Gaps = 1/129 (0%)
Frame = +3
Query: 426 KRESLCPQGKYSHPQNRSICCTKCHKGTYLHNDCLGPGLDTDCRECDNG-TFTASENHLT 602
KRES CP+G++ Q CC C G H DC PG C C G +T +H +
Sbjct: 41 KRESECPEGQHREGQ---FCCQPCPPGKRKHADCTSPGGAPQCVPCSEGEDYTDKNHHSS 97
Query: 603 QCLSCSKCRSEMSQVEISPCTVDRDTVCGCRKNQYRKYWSETLFQCLNCSLCPNGTVQLP 782
+C C C E CT ++T C C+ N + + C C+ C +G ++
Sbjct: 98 KCRRCRVCDGEHGLEVEKNCTRTQNTKCRCKPNFF--CHTSQCEHCNPCTTCEHGVIE-N 154
Query: 783 CLEKQDTIC 809
C +T C
Sbjct: 155 CTPTSNTKC 163
>ref|XP_003353778.1| PREDICTED: hypothetical protein LOC100627067 [Sus scrofa].
Length = 284
Score = 61.6 bits (148), Expect = 2e-09
Identities = 30/105 (28%), Positives = 45/105 (42%)
Frame = +3
Query: 495 CHKGTYLHNDCLGPGLDTDCRECDNGTFTASENHLTQCLSCSKCRSEMSQVEISPCTVDR 674
C G Y+ G CR C GTF+ + T CL C+ CR + Q ++ C+ R
Sbjct: 43 CPAGQYVSQPMAGDHGVVACRPCQPGTFSPYASEETSCLPCALCRKD--QEVVTECSPTR 100
Query: 675 DTVCGCRKNQYRKYWSETLFQCLNCSLCPNGTVQLPCLEKQDTIC 809
D C C++ + + C C C + V PC +D +C
Sbjct: 101 DRQCQCKRGHFFCDSMDCEENCFRCQRCEHSAVLRPCNATRDAVC 145
>ref|NP_001090910.2| tumor necrosis factor receptor superfamily member 1B [Sus scrofa].
Length = 461
Score = 60.8 bits (146), Expect = 3e-09
Identities = 40/126 (31%), Positives = 56/126 (44%), Gaps = 9/126 (7%)
Frame = +3
Query: 480 ICCTKCHKGTYLHNDCLGPGLDTDCRECDNGTFTASENHLTQCLSC-SKCRSEMSQVEIS 656
+CC+KC G + C DT C C++ T+T N ++ C SC S+C S+ QVE
Sbjct: 54 MCCSKCPPGFRIQTSCNRTS-DTVCGSCESSTYTQLWNSVSACFSCNSRCSSD--QVETQ 110
Query: 657 PCTVDRDTVCGCRKNQYRKYWSETLFQCLNCSLC-------PNGTVQLPCLEKQDTIC-N 812
CT ++ +C C+ W TL + C LC P V P D +C
Sbjct: 111 ACTPKQNRICSCKPG-----WYCTLGRQEGCRLCMALRKCSPGFGVTKPGTATSDVVCAP 165
Query: 813 CHSGFF 830
C G F
Sbjct: 166 CAPGTF 171
>ref|XP_003128478.1| PREDICTED: LOW QUALITY PROTEIN: tumor necrosis factor receptor
superfamily member 21-like [Sus scrofa].
Length = 652
Score = 56.6 bits (135), Expect = 5e-08
Identities = 43/133 (32%), Positives = 56/133 (42%), Gaps = 6/133 (4%)
Frame = +3
Query: 450 GKYSHPQN---RSICCTKCHKGTYLHNDCLGPGLDTDCRECDNGTFTASENHLTQCLSCS 620
GKY H + + C KC GTY+ C L C C GTFT EN + +C CS
Sbjct: 49 GKYHHVDRVTGQVLTCDKCPAGTYVSEHCTNTSLRV-CSSCPVGTFTRHENGIEKCHQCS 107
Query: 621 K-CRSEMSQVEISPCTVDRDTVCGCRKNQYRKYWSETLFQCLNCSLCPNG-TVQLPCLEK 794
+ C M VE PC D C C ++ + C ++CP G V+ E
Sbjct: 108 QPCPWPM--VEKLPCAALTDRECTCPPGMFQSNGT-----CAPHTVCPVGWGVRKKGTEM 160
Query: 795 QDTIC-NCHSGFF 830
+D C C G F
Sbjct: 161 EDVRCKQCARGTF 173
>ref|XP_003359083.1| PREDICTED: tumor necrosis factor receptor superfamily member
10A-like [Sus scrofa].
Length = 421
Score = 54.3 bits (129), Expect = 2e-07
Identities = 37/115 (32%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
Frame = +3
Query: 474 RSICCTKCHKGTYLHNDCLGPGLDTDCRECDNGT-FTASENHLTQCLSCSKCRSEMSQVE 650
+ +CC K G ++ D +C C +G FT N L CL C+ C+S + E
Sbjct: 15 KGLCCLKA--GYHVSED------GKNCTSCIHGVDFTIYWNVLPSCLPCTTCKS--GEEE 64
Query: 651 ISPCTVDRDTVCGCRKNQYRKYWSETLFQCLNC-SLCPNGTVQ-LPCLEKQDTIC 809
+PCT DT C C+ +R+ S C C + CP+G V PC D C
Sbjct: 65 KTPCTATADTRCECKPGTFREENSPEF--CQKCHTRCPDGMVMATPCTPSSDLKC 117
>ref|XP_001926676.3| PREDICTED: tumor necrosis factor receptor superfamily member
10A-like [Sus scrofa].
Length = 421
Score = 54.3 bits (129), Expect = 2e-07
Identities = 37/115 (32%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
Frame = +3
Query: 474 RSICCTKCHKGTYLHNDCLGPGLDTDCRECDNGT-FTASENHLTQCLSCSKCRSEMSQVE 650
+ +CC K G ++ D +C C +G FT N L CL C+ C+S + E
Sbjct: 15 KGLCCLKA--GYHVSED------GKNCTSCIHGVDFTIYWNVLPSCLPCTTCKS--GEEE 64
Query: 651 ISPCTVDRDTVCGCRKNQYRKYWSETLFQCLNC-SLCPNGTVQ-LPCLEKQDTIC 809
+PCT DT C C+ +R+ S C C + CP+G V PC D C
Sbjct: 65 KTPCTATADTRCECKPGTFREENSPEF--CQKCHTRCPDGMVMATPCTPSSDLKC 117
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 51,174,667
Number of extensions: 1672653
Number of successful extensions: 11726
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 11301
Number of HSP's successfully gapped: 16
Length of query: 663
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 558
Effective length of database: 8,729,747
Effective search space: 4871198826
Effective search space used: 4871198826
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012710
(1991 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035739.2| tumor necrosis factor receptor superfamily memb... 459 e-129
Alignment gi|NP_783580.1| tumor necrosis factor receptor superfamily memb... 89 2e-17
Alignment gi|NP_076169.2| tumor necrosis factor receptor superfamily memb... 78 3e-14
Alignment gi|NP_077252.2| tumor necrosis factor receptor superfamily memb... 75 2e-13
Alignment gi|NP_034866.1| tumor necrosis factor receptor superfamily memb... 74 4e-13
Alignment gi|NP_849262.1| tumor necrosis factor receptor superfamily memb... 68 3e-11
Alignment gi|NP_149031.2| tumor necrosis factor receptor superfamily memb... 67 4e-11
Alignment gi|NP_035740.2| tumor necrosis factor receptor superfamily memb... 64 4e-10
Alignment gi|NP_848704.1| tumor necrosis factor receptor superfamily memb... 62 2e-09
Alignment gi|NP_150086.2| tumor necrosis factor receptor superfamily memb... 60 5e-09
>ref|NP_035739.2| tumor necrosis factor receptor superfamily member 1A precursor [Mus
musculus].
Length = 454
Score = 459 bits (1180), Expect = e-129
Identities = 233/428 (54%), Positives = 278/428 (64%), Gaps = 4/428 (0%)
Frame = +3
Query: 375 VYPAGVHGLVLHPGDREKRESLCPQGKYSHPQNRSICCTKCHKGTYLHNDCLGPGLDTDC 554
++P+GV GLV GDREKR+SLCPQGKY H +N SICCTKCHKGTYL +DC PG DT C
Sbjct: 22 IHPSGVTGLVPSLGDREKRDSLCPQGKYVHSKNNSICCTKCHKGTYLVSDCPSPGRDTVC 81
Query: 555 RECDNGTFTASENHLTQCLSCSKCRSEMSQVEISPCTVDRDTVCGCRKNQYRKYWSETLF 734
REC+ GTFTAS+N+L QCLSC CR EMSQVEISPC D+DTVCGC++NQ+++Y SET F
Sbjct: 82 RECEKGTFTASQNYLRQCLSCKTCRKEMSQVEISPCQADKDTVCGCKENQFQRYLSETHF 141
Query: 735 QCLNCSLCPNGTVQLPCLEKQDTICNCHSGFFLRDKECVSCVNC-KNADCKNLC--PATS 905
QC++CS C NGTV +PC E Q+T+CNCH+GFFLR+ ECV C +C KN +C LC P +
Sbjct: 142 QCVDCSPCFNGTVTIPCKETQNTVCNCHAGFFLRESECVPCSHCKKNEECMKLCLPPPLA 201
Query: 906 ETRNDFQDTGTTVLLPLVIFFGLCLAFFLFVGLACRYQRWKPKLYSIICGKSTPVKEGEP 1085
N QD+GT VLLPLVI GLCL F+F+ L CRY RW+P++YSIIC PVKE +
Sbjct: 202 NVTNP-QDSGTAVLLPLVILLGLCLLSFIFISLMCRYPRWRPEVYSIICRDPVPVKEEKA 260
Query: 1086 -EPLATAPSFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCDWSNIKVTSPPKEIA 1262
+PL APS +W + PP
Sbjct: 261 GKPLTPAPSPAFSPTSGFNPTLGFSTPGFSSPVSSTPISPIFGPSNWHFM----PPVSEV 316
Query: 1263 PPPQGAGPIXXXXXXXXXXXXXXXKWXXXXXXXXXXPAQLADADPATLYAVVDGVPPTRW 1442
P QGA P+ KW P + +AD A LYAVVDGVPP RW
Sbjct: 317 VPTQGADPLLYESLCSVPAPTSVQKW-----EDSAHPQRPDNADLAILYAVVDGVPPARW 371
Query: 1443 KEFVRRLGLSEHEIERLELQNGRCLREAQYSMLAEWRRRTSRREATLELLGSVLRDMDLL 1622
KEF+R +GLSEHEIERLE+QNGRCLREAQYSML WRRRT R E TLE++G VL M+L
Sbjct: 372 KEFMRFMGLSEHEIERLEMQNGRCLREAQYSMLEAWRRRTPRHEDTLEVVGLVLSKMNLA 431
Query: 1623 GCLEDIEE 1646
GCLE+I E
Sbjct: 432 GCLENILE 439
>ref|NP_783580.1| tumor necrosis factor receptor superfamily member 26 precursor [Mus
musculus].
Length = 204
Score = 88.6 bits (218), Expect = 2e-17
Identities = 43/126 (34%), Positives = 65/126 (51%)
Frame = +3
Query: 435 SLCPQGKYSHPQNRSICCTKCHKGTYLHNDCLGPGLDTDCRECDNGTFTASENHLTQCLS 614
+LC G++ H ++CC +C GTYL N C ++C CD+ F +N ++C
Sbjct: 25 TLCKIGEFKH---ENLCCLQCSAGTYLRNPCQENHNKSECAPCDSEHFIDHKNRESECFP 81
Query: 615 CSKCRSEMSQVEISPCTVDRDTVCGCRKNQYRKYWSETLFQCLNCSLCPNGTVQLPCLEK 794
CS CR + Q E++ C+ D VC C++ Y L +C CS CP+G V C
Sbjct: 82 CSVCRDD--QEEVAKCSRTADRVCQCKQGTYCDS-ENCLERCHTCSSCPDGRVVRKCNAT 138
Query: 795 QDTICN 812
DT+C+
Sbjct: 139 MDTVCD 144
>ref|NP_076169.2| tumor necrosis factor receptor superfamily member 22 [Mus
musculus].
Length = 180
Score = 77.8 bits (190), Expect = 3e-14
Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 1/125 (0%)
Frame = +3
Query: 441 CPQGKYSHPQNRSICCTKCHKGTYLHNDCLGPGLDTDCRECDNGTFTASENHLTQCLSCS 620
CP G+Y ++ +CC C GT++ C P C +C GTFT +N+L C+ CS
Sbjct: 48 CPAGEY---WSKDVCCKNCSAGTFVKAPCEIPHTQGQCEKCHPGTFTEKDNYLDACILCS 104
Query: 621 KCRSEMSQVEISPCTVDRDTVCGCRKNQYRKYWSETLFQCLNCSLCPNG-TVQLPCLEKQ 797
C + Q ++ C+ D C CR Y Y + C C+ CP G V C
Sbjct: 105 TC--DKDQEMVADCSATSDRKCQCRTGLY-YYDPKFPESCRPCTKCPQGIPVLQECNSTA 161
Query: 798 DTICN 812
+T+C+
Sbjct: 162 NTVCS 166
>ref|NP_077252.2| tumor necrosis factor receptor superfamily member 23 [Mus
musculus].
Length = 176
Score = 75.1 bits (183), Expect = 2e-13
Identities = 41/127 (32%), Positives = 58/127 (45%), Gaps = 3/127 (2%)
Frame = +3
Query: 441 CPQGKYSHPQNRSICCTKCHKGTYLHNDCLGPGLDTDCRECDNGTFTASENHLTQCLSCS 620
CP G+Y Q+ +CC C GT++ C P C +C GTFT +N L C CS
Sbjct: 38 CPDGEY---QSNDVCCKTCPSGTFVKAPCKIPHTQGQCEKCHPGTFTGKDNGLHDCELCS 94
Query: 621 KCRSEMSQVEISPCTVDRDTVCGCRKNQYRKYWSETLF--QCLNCSLCPNG-TVQLPCLE 791
C + + V + C+ D C C Q Y+ + F C C+ CP G V C
Sbjct: 95 TCDKDQNMV--ADCSATSDRKCEC---QIGLYYYDPKFPESCRPCTKCPQGIPVLQECNS 149
Query: 792 KQDTICN 812
+T+C+
Sbjct: 150 TANTVCS 156
>ref|NP_034866.1| tumor necrosis factor receptor superfamily member 3 precursor [Mus
musculus].
Length = 415
Score = 73.9 bits (180), Expect = 4e-13
Identities = 66/251 (26%), Positives = 96/251 (38%), Gaps = 17/251 (6%)
Frame = +3
Query: 405 LHPGDREKRESLCPQGKYSHPQNRSICCTKCHKGTYLHNDCLGPGLDTDCRECDNGTFTA 584
L P R + ++ Q K + +CC++C G ++ C DT C+ C + ++
Sbjct: 32 LVPPYRIENQTCWDQDKEYYEPMHDVCCSRCPPGEFVFAVC-SRSQDTVCKTCPHNSYNE 90
Query: 585 SENHLTQCLSCSKCRSEMSQVEISPCTVDRDTVCGCRKNQYRKYWSETLFQCLNCS---- 752
NHL+ C C C + E++PCT DR C C+ Y +C++C
Sbjct: 91 HWNHLSTCQLCRPCDIVLGFEEVAPCTSDRKAECRCQPGMSCVYLDN---ECVHCEEERL 147
Query: 753 -LCPNGTVQLPCLEKQDTICN---CHSGFFLRDK----ECVSCVNCKNADCKNLCPATSE 908
LC GT E DT N C G F C C+ P TS
Sbjct: 148 VLCQPGTEAEVTDEIMDTDVNCVPCKPGHFQNTSSPRARCQPHTRCEIQGLVEAAPGTSY 207
Query: 909 TRNDFQDTGTT-VLLPLVIFFGLCLAFFLFVGLACRYQRWKPKLYSIICGK-STPVK--- 1073
+ ++ +L L I L L LAC + R + +C K T +K
Sbjct: 208 SDTICKNPPEPGAMLLLAILLSLVLFLLFTTVLACAWMR-----HPSLCRKLGTLLKRHP 262
Query: 1074 EGEPEPLATAP 1106
EGE P AP
Sbjct: 263 EGEESPPCPAP 273
>ref|NP_849262.1| tumor necrosis factor receptor superfamily member 14 [Mus
musculus].
Length = 275
Score = 67.8 bits (164), Expect = 3e-11
Identities = 59/191 (30%), Positives = 80/191 (41%), Gaps = 21/191 (10%)
Frame = +3
Query: 483 CCTKCHKGTYLHNDCLGPGLDTDCRECDNGTFTASENHLTQCLSCSKCRSEMSQVEISPC 662
CC C+ G ++ C T C C T+TA N L++CL C C +M + C
Sbjct: 53 CCPMCNPGYHVKQVC-SEHTGTVCAPCPPQTYTAHANGLSKCLPCGVCDPDMGLLTWQEC 111
Query: 663 TVDRDTVCGC-----RKNQYRKYWSETLFQCLNCSLCPNG-TVQLPCLEKQDTIC-NCHS 821
+ +DTVC C +NQ + S CL + CP G V+ QDT+C +C +
Sbjct: 112 SSWKDTVCRCIPGYFCENQDGSHCS----TCLQHTTCPPGQRVEKRGTHDQDTVCADCLT 167
Query: 822 GFFL---RDKECVSCVNCKNADCKNLCPATSETRNDFQDTGTT-----------VLLPLV 959
G F +EC+ NC E R T TT +LLPLV
Sbjct: 168 GTFSLGGTQEECLPWTNCS--------AFQQEVRRGTNSTDTTCSSQVVYYVVSILLPLV 219
Query: 960 IFFGLCLAFFL 992
I G +A FL
Sbjct: 220 I-VGAGIAGFL 229
>ref|NP_149031.2| tumor necrosis factor receptor superfamily member 25 [Mus musculus].
Length = 387
Score = 67.4 bits (163), Expect = 4e-11
Identities = 41/90 (45%), Positives = 53/90 (58%)
Frame = +3
Query: 1371 PAQLADADPATLYAVVDGVPPTRWKEFVRRLGLSEHEIERLELQNGRCLREAQYSMLAEW 1550
PA + P LY V+D VP RWKEFVR LGL E EIE +E++ R R+ QY ML W
Sbjct: 295 PAAVLQPGPQ-LYDVMDAVPARRWKEFVRTLGLREAEIEAVEVEICR-FRDQQYEMLKRW 352
Query: 1551 RRRTSRREATLELLGSVLRDMDLLGCLEDI 1640
R+ ++ A L + + L M L GC ED+
Sbjct: 353 RQ---QQPAGLGAIYAALERMGLEGCAEDL 379
Score = 64.7 bits (156), Expect = 3e-10
Identities = 35/110 (31%), Positives = 46/110 (41%), Gaps = 1/110 (0%)
Frame = +3
Query: 441 CPQGKYSHPQNRSICCTKCHKGTYLHNDCLGPGLDTDCRECDNGTFTASENHL-TQCLSC 617
C S + CC C KG Y+ C P ++ C C + TF +NH T C C
Sbjct: 51 CDCASESQKRYGPFCCRGCPKGHYMKAPCAEPCGNSTCLPCPSDTFLTRDNHFKTDCTRC 110
Query: 618 SKCRSEMSQVEISPCTVDRDTVCGCRKNQYRKYWSETLFQCLNCSLCPNG 767
C E QV + C+ DT CGC+ W C++CS P G
Sbjct: 111 QVCDEEALQVTLENCSAKSDTHCGCQSG-----W------CVDCSTEPCG 149
>ref|NP_035740.2| tumor necrosis factor receptor superfamily member 1B [Mus
musculus].
Length = 474
Score = 63.9 bits (154), Expect = 4e-10
Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 3/112 (2%)
Frame = +3
Query: 441 CPQGKYSHPQNRSICCTKCHKGTYLHNDCLGPGLDTDCRECDNGTFTASENHLTQCLSC- 617
C + + + +CC KC G Y+ + C DT C +C+ +T N CLSC
Sbjct: 40 CQISQEYYDRKAQMCCAKCPPGQYVKHFC-NKTSDTVCADCEASMYTQVWNQFRTCLSCS 98
Query: 618 SKCRSEMSQVEISPCTVDRDTVCGCRKNQY--RKYWSETLFQCLNCSLCPNG 767
S C ++ QVEI CT ++ VC C +Y K S + QC+ S C G
Sbjct: 99 SSCTTD--QVEIRACTKQQNRVCACEAGRYCALKTHSGSCRQCMRLSKCGPG 148
>ref|NP_848704.1| tumor necrosis factor receptor superfamily member 21 precursor [Mus
musculus].
Length = 655
Score = 61.6 bits (148), Expect = 2e-09
Identities = 50/174 (28%), Positives = 73/174 (41%), Gaps = 10/174 (5%)
Frame = +3
Query: 426 KRESLCPQGKYSHPQNRS---ICCTKCHKGTYLHNDCLGPGLDTDCRECDNGTFTASENH 596
++++L G Y H + + C KC GTY+ C L C C GTFT EN
Sbjct: 44 EQKTLSLPGTYRHVDRTTGQVLTCDKCPAGTYVSEHCTNMSLRV-CSSCPAGTFTRHENG 102
Query: 597 LTQCLSCSK-CRSEMSQVEISPCTVDRDTVCGCRKNQYRKYWSETLFQCLNCSLCPNG-T 770
+ +C CS+ C M +E PC D C C Y+ + C ++CP G
Sbjct: 103 IERCHDCSQPCPWPM--IERLPCAALTDRECICPPGMYQSNGT-----CAPHTVCPVGWG 155
Query: 771 VQLPCLEKQDTIC-NCHSGFF----LRDKECVSCVNCKNADCKNLCPATSETRN 917
V+ E +D C C G F +C + +C + + + P T ET N
Sbjct: 156 VRKKGTENEDVRCKQCARGTFSDVPSSVMKCKAHTDCLGQNLEVVKPGTKETDN 209
>ref|NP_150086.2| tumor necrosis factor receptor superfamily member 16 [Mus
musculus].
Length = 427
Score = 60.5 bits (145), Expect = 5e-09
Identities = 43/153 (28%), Positives = 65/153 (42%), Gaps = 7/153 (4%)
Frame = +3
Query: 441 CPQGKYSHPQNRSICCTKCHKGTYLHNDCLGPGLDTDCREC-DNGTFTASENHLTQCLSC 617
C G Y+H CC C+ G + C T C C D+ TF+ + C C
Sbjct: 35 CSTGMYTHSGE---CCKACNLGEGVAQPC--GANQTVCEPCLDSVTFSDVVSATEPCKPC 89
Query: 618 SKCRSEMSQVEISPCTVDRDTVCGCRKNQYRKYWSETLFQCLNCSLCPNGT-VQLPCLEK 794
++C S +PC D VC C Y Y E +C CS+C G+ + C +K
Sbjct: 90 TECLGLQSMS--APCVEADDAVCRC---SYGYYQDEETGRCEACSVCGVGSGLVFSCQDK 144
Query: 795 QDTIC-NCHSGFFLRDKE----CVSCVNCKNAD 878
Q+T+C C G + + C+ C C++ +
Sbjct: 145 QNTVCEECPEGTYSDEANHVDPCLPCTVCEDTE 177
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 67,307,412
Number of extensions: 2069113
Number of successful extensions: 12818
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 12386
Number of HSP's successfully gapped: 18
Length of query: 663
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 555
Effective length of database: 12,373,671
Effective search space: 6867387405
Effective search space used: 6867387405
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012710
(1991 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001056.1| tumor necrosis factor receptor superfamily memb... 550 e-156
Alignment gi|NP_683867.1| tumor necrosis factor receptor superfamily memb... 79 1e-14
Alignment gi|NP_002333.1| tumor necrosis factor receptor superfamily memb... 79 1e-14
Alignment gi|NP_003781.1| tumor necrosis factor receptor superfamily memb... 79 2e-14
Alignment gi|NP_001034753.1| tumor necrosis factor receptor superfamily m... 74 7e-13
Alignment gi|NP_683866.1| tumor necrosis factor receptor superfamily memb... 74 7e-13
Alignment gi|NP_683871.1| tumor necrosis factor receptor superfamily memb... 72 2e-12
Alignment gi|NP_683868.1| tumor necrosis factor receptor superfamily memb... 72 2e-12
Alignment gi|NP_001057.1| tumor necrosis factor receptor superfamily memb... 69 2e-11
Alignment gi|NP_003832.2| tumor necrosis factor receptor superfamily memb... 62 3e-09
>ref|NP_001056.1| tumor necrosis factor receptor superfamily member 1A precursor [Homo
sapiens].
Length = 455
Score = 550 bits (1416), Expect = e-156
Identities = 277/430 (64%), Positives = 301/430 (70%), Gaps = 6/430 (1%)
Frame = +3
Query: 375 VYPAGVHGLVLHPGDREKRESLCPQGKYSHPQNRSICCTKCHKGTYLHNDCLGPGLDTDC 554
+YP+GV GLV H GDREKR+S+CPQGKY HPQN SICCTKCHKGTYL+NDC GPG DTDC
Sbjct: 22 IYPSGVIGLVPHLGDREKRDSVCPQGKYIHPQNNSICCTKCHKGTYLYNDCPGPGQDTDC 81
Query: 555 RECDNGTFTASENHLTQCLSCSKCRSEMSQVEISPCTVDRDTVCGCRKNQYRKYWSETLF 734
REC++G+FTASENHL CLSCSKCR EM QVEIS CTVDRDTVCGCRKNQYR YWSE LF
Sbjct: 82 RECESGSFTASENHLRHCLSCSKCRKEMGQVEISSCTVDRDTVCGCRKNQYRHYWSENLF 141
Query: 735 QCLNCSLCPNGTVQLPCLEKQDTICNCHSGFFLRDKECVSCVNCKNA-DCKNLCPATSET 911
QC NCSLC NGTV L C EKQ+T+C CH+GFFLR+ ECVSC NCK + +C LC E
Sbjct: 142 QCFNCSLCLNGTVHLSCQEKQNTVCTCHAGFFLRENECVSCSNCKKSLECTKLCLPQIEN 201
Query: 912 RNDFQDTGTTVLLPLVIFFGLCLAFFLFVGLACRYQRWKPKLYSIICGKSTPVKEGEPE- 1088
+D+GTTVLLPLVIFFGLCL LF+GL RYQRWK KLYSI+CGKSTP KEGE E
Sbjct: 202 VKGTEDSGTTVLLPLVIFFGLCLLSLLFIGLMYRYQRWKSKLYSIVCGKSTPEKEGELEG 261
Query: 1089 ----PLATAPSFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCDWSNIKVTSPPKE 1256
PLA PSF D N +P +E
Sbjct: 262 TTTKPLAPNPSFSPTPGFTPTLGFSPVPSSTFTSSSTYTPG------DCPNF--AAPRRE 313
Query: 1257 IAPPPQGAGPIXXXXXXXXXXXXXXXKWXXXXXXXXXXPAQLADADPATLYAVVDGVPPT 1436
+APP QGA PI KW P L DPATLYAVV+ VPP
Sbjct: 314 VAPPYQGADPILATALASDPIPNPLQKW----EDSAHKPQSLDTDDPATLYAVVENVPPL 369
Query: 1437 RWKEFVRRLGLSEHEIERLELQNGRCLREAQYSMLAEWRRRTSRREATLELLGSVLRDMD 1616
RWKEFVRRLGLS+HEI+RLELQNGRCLREAQYSMLA WRRRT RREATLELLG VLRDMD
Sbjct: 370 RWKEFVRRLGLSDHEIDRLELQNGRCLREAQYSMLATWRRRTPRREATLELLGRVLRDMD 429
Query: 1617 LLGCLEDIEE 1646
LLGCLEDIEE
Sbjct: 430 LLGCLEDIEE 439
>ref|NP_683867.1| tumor necrosis factor receptor superfamily member 25 isoform 3
precursor [Homo sapiens].
Length = 380
Score = 79.3 bits (194), Expect = 1e-14
Identities = 54/173 (31%), Positives = 72/173 (41%), Gaps = 9/173 (5%)
Frame = +3
Query: 462 HPQNRSICCTKCHKGTYLHNDCLGPGLDTDCRECDNGTFTASENHL-TQCLSCSKCRSEM 638
H + CC C G YL C P ++ C C TF A ENH ++C C C +
Sbjct: 40 HKKIGLFCCRGCPAGHYLKAPCTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQA 99
Query: 639 SQVEISPCTVDRDTVCGCRKN-----QYRKYWSETLFQCLNCSLCP--NGTVQLPCLEKQ 797
SQV + C+ DT CGC+ Q + S + F C C C + +L C ++
Sbjct: 100 SQVALENCSAVADTRCGCKPGWFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLC-SRR 158
Query: 798 DTIC-NCHSGFFLRDKECVSCVNCKNADCKNLCPATSETRNDFQDTGTTVLLP 953
DT C C GF+ CVSC C C A R + + G L P
Sbjct: 159 DTDCGTCLPGFYEHGDGCVSCPTSTLGSCPERCAAVCGWRQN--EAGMEALTP 209
Score = 71.6 bits (174), Expect = 2e-12
Identities = 42/90 (46%), Positives = 55/90 (61%)
Frame = +3
Query: 1371 PAQLADADPATLYAVVDGVPPTRWKEFVRRLGLSEHEIERLELQNGRCLREAQYSMLAEW 1550
PA + P LY V+D VP RWKEFVR LGL E EIE +E++ GR R+ QY ML W
Sbjct: 288 PAMMLQPGPQ-LYDVMDAVPARRWKEFVRTLGLREAEIEAVEVEIGR-FRDQQYEMLKRW 345
Query: 1551 RRRTSRREATLELLGSVLRDMDLLGCLEDI 1640
R+ ++ A L + + L M L GC+ED+
Sbjct: 346 RQ---QQPAGLGAVYAALERMGLDGCVEDL 372
>ref|NP_002333.1| tumor necrosis factor receptor superfamily member 3 precursor [Homo
sapiens].
Length = 435
Score = 79.3 bits (194), Expect = 1e-14
Identities = 72/246 (29%), Positives = 105/246 (42%), Gaps = 31/246 (12%)
Frame = +3
Query: 453 KYSHPQNRSICCTKCHKGTYLHNDCLGPGLDTDCRECDNGTFTASENHLTQCLSCSKCRS 632
+Y PQ+R ICC++C GTY+ C DT C C ++ N+LT C C C
Sbjct: 49 EYYEPQHR-ICCSRCPPGTYVSAKC-SRIRDTVCATCAENSYNEHWNYLTICQLCRPCDP 106
Query: 633 EMSQVEISPCTVDRDTVCGCRKNQYRKYWSETLFQCLNCSL---CPNGTVQLPCLEKQDT 803
M EI+PCT R T C C+ + W+ +C +C L CP GT E +D
Sbjct: 107 VMGLEEIAPCTSKRKTQCRCQPGMFCAAWA---LECTHCELLSDCPPGTE----AELKDE 159
Query: 804 I-------CNCHSGFFLR----DKECVSCVNCKNADCKNLCPATSETRNDFQD------- 929
+ C +G F C C+N P T+++ ++
Sbjct: 160 VGKGNNHCVPCKAGHFQNTSSPSARCQPHTRCENQGLVEAAPGTAQSDTTCKNPLEPLPP 219
Query: 930 --TGTTVLLPLVIFFGLCLAFFLFVG--LACRYQRWKP------KLYSIICGKSTPVKEG 1079
+GT ++L ++ L LAFFL + +C WK KL S++ K P EG
Sbjct: 220 EMSGTMLMLAVL----LPLAFFLLLATVFSC---IWKSHPSLCRKLGSLL--KRRPQGEG 270
Query: 1080 EPEPLA 1097
P P+A
Sbjct: 271 -PNPVA 275
>ref|NP_003781.1| tumor necrosis factor receptor superfamily member 25 isoform 2
precursor [Homo sapiens].
Length = 417
Score = 79.0 bits (193), Expect = 2e-14
Identities = 52/163 (31%), Positives = 68/163 (41%), Gaps = 9/163 (5%)
Frame = +3
Query: 462 HPQNRSICCTKCHKGTYLHNDCLGPGLDTDCRECDNGTFTASENHL-TQCLSCSKCRSEM 638
H + CC C G YL C P ++ C C TF A ENH ++C C C +
Sbjct: 40 HKKIGLFCCRGCPAGHYLKAPCTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQA 99
Query: 639 SQVEISPCTVDRDTVCGCRKN-----QYRKYWSETLFQCLNCSLCP--NGTVQLPCLEKQ 797
SQV + C+ DT CGC+ Q + S + F C C C + +L C ++
Sbjct: 100 SQVALENCSAVADTRCGCKPGWFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLC-SRR 158
Query: 798 DTIC-NCHSGFFLRDKECVSCVNCKNADCKNLCPATSETRNDF 923
DT C C GF+ CVSC C C A R F
Sbjct: 159 DTDCGTCLPGFYEHGDGCVSCPTSTLGSCPERCAAVCGWRQMF 201
Score = 71.6 bits (174), Expect = 2e-12
Identities = 42/90 (46%), Positives = 55/90 (61%)
Frame = +3
Query: 1371 PAQLADADPATLYAVVDGVPPTRWKEFVRRLGLSEHEIERLELQNGRCLREAQYSMLAEW 1550
PA + P LY V+D VP RWKEFVR LGL E EIE +E++ GR R+ QY ML W
Sbjct: 325 PAMMLQPGPQ-LYDVMDAVPARRWKEFVRTLGLREAEIEAVEVEIGR-FRDQQYEMLKRW 382
Query: 1551 RRRTSRREATLELLGSVLRDMDLLGCLEDI 1640
R+ ++ A L + + L M L GC+ED+
Sbjct: 383 RQ---QQPAGLGAVYAALERMGLDGCVEDL 409
>ref|NP_001034753.1| tumor necrosis factor receptor superfamily member 25 isoform 12
precursor [Homo sapiens].
Length = 181
Score = 73.6 bits (179), Expect = 7e-13
Identities = 47/141 (33%), Positives = 63/141 (44%), Gaps = 9/141 (6%)
Frame = +3
Query: 462 HPQNRSICCTKCHKGTYLHNDCLGPGLDTDCRECDNGTFTASENHL-TQCLSCSKCRSEM 638
H + CC C G YL C P ++ C C TF A ENH ++C C C +
Sbjct: 40 HKKIGLFCCRGCPAGHYLKAPCTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQA 99
Query: 639 SQVEISPCTVDRDTVCGCRKN-----QYRKYWSETLFQCLNCSLCP--NGTVQLPCLEKQ 797
SQV + C+ DT CGC+ Q + S + F C C C + +L C ++
Sbjct: 100 SQVALENCSAVADTRCGCKPGWFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLC-SRR 158
Query: 798 DTIC-NCHSGFFLRDKECVSC 857
DT C C GF+ CVSC
Sbjct: 159 DTDCGTCLPGFYEHGDGCVSC 179
>ref|NP_683866.1| tumor necrosis factor receptor superfamily member 25 isoform 1
precursor [Homo sapiens].
Length = 426
Score = 73.6 bits (179), Expect = 7e-13
Identities = 47/141 (33%), Positives = 63/141 (44%), Gaps = 9/141 (6%)
Frame = +3
Query: 462 HPQNRSICCTKCHKGTYLHNDCLGPGLDTDCRECDNGTFTASENHL-TQCLSCSKCRSEM 638
H + CC C G YL C P ++ C C TF A ENH ++C C C +
Sbjct: 40 HKKIGLFCCRGCPAGHYLKAPCTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQA 99
Query: 639 SQVEISPCTVDRDTVCGCRKN-----QYRKYWSETLFQCLNCSLCP--NGTVQLPCLEKQ 797
SQV + C+ DT CGC+ Q + S + F C C C + +L C ++
Sbjct: 100 SQVALENCSAVADTRCGCKPGWFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLC-SRR 158
Query: 798 DTIC-NCHSGFFLRDKECVSC 857
DT C C GF+ CVSC
Sbjct: 159 DTDCGTCLPGFYEHGDGCVSC 179
Score = 71.6 bits (174), Expect = 2e-12
Identities = 42/90 (46%), Positives = 55/90 (61%)
Frame = +3
Query: 1371 PAQLADADPATLYAVVDGVPPTRWKEFVRRLGLSEHEIERLELQNGRCLREAQYSMLAEW 1550
PA + P LY V+D VP RWKEFVR LGL E EIE +E++ GR R+ QY ML W
Sbjct: 334 PAMMLQPGPQ-LYDVMDAVPARRWKEFVRTLGLREAEIEAVEVEIGR-FRDQQYEMLKRW 391
Query: 1551 RRRTSRREATLELLGSVLRDMDLLGCLEDI 1640
R+ ++ A L + + L M L GC+ED+
Sbjct: 392 RQ---QQPAGLGAVYAALERMGLDGCVEDL 418
>ref|NP_683871.1| tumor necrosis factor receptor superfamily member 25 isoform 7
precursor [Homo sapiens].
Length = 234
Score = 71.6 bits (174), Expect = 2e-12
Identities = 42/90 (46%), Positives = 55/90 (61%)
Frame = +3
Query: 1371 PAQLADADPATLYAVVDGVPPTRWKEFVRRLGLSEHEIERLELQNGRCLREAQYSMLAEW 1550
PA + P LY V+D VP RWKEFVR LGL E EIE +E++ GR R+ QY ML W
Sbjct: 142 PAMMLQPGPQ-LYDVMDAVPARRWKEFVRTLGLREAEIEAVEVEIGR-FRDQQYEMLKRW 199
Query: 1551 RRRTSRREATLELLGSVLRDMDLLGCLEDI 1640
R+ ++ A L + + L M L GC+ED+
Sbjct: 200 RQ---QQPAGLGAVYAALERMGLDGCVEDL 226
>ref|NP_683868.1| tumor necrosis factor receptor superfamily member 25 isoform 4
precursor [Homo sapiens].
Length = 372
Score = 71.6 bits (174), Expect = 2e-12
Identities = 42/90 (46%), Positives = 55/90 (61%)
Frame = +3
Query: 1371 PAQLADADPATLYAVVDGVPPTRWKEFVRRLGLSEHEIERLELQNGRCLREAQYSMLAEW 1550
PA + P LY V+D VP RWKEFVR LGL E EIE +E++ GR R+ QY ML W
Sbjct: 280 PAMMLQPGPQ-LYDVMDAVPARRWKEFVRTLGLREAEIEAVEVEIGR-FRDQQYEMLKRW 337
Query: 1551 RRRTSRREATLELLGSVLRDMDLLGCLEDI 1640
R+ ++ A L + + L M L GC+ED+
Sbjct: 338 RQ---QQPAGLGAVYAALERMGLDGCVEDL 364
>ref|NP_001057.1| tumor necrosis factor receptor superfamily member 1B precursor
[Homo sapiens].
Length = 461
Score = 68.9 bits (167), Expect = 2e-11
Identities = 54/180 (30%), Positives = 75/180 (41%), Gaps = 19/180 (10%)
Frame = +3
Query: 435 SLCPQGKYSHPQNRSICCTKCHKGTYLHNDCLGPGLDTDCRECDNGTFTASENHLTQCLS 614
S C +Y + Q +CC+KC G + C DT C C++ T+T N + +CLS
Sbjct: 38 STCRLREY-YDQTAQMCCSKCSPGQHAKVFCTKTS-DTVCDSCEDSTYTQLWNWVPECLS 95
Query: 615 C-SKCRSEMSQVEISPCTVDRDTVCGCRKNQYRKYWSETLFQCLNCSLC-------PNGT 770
C S+C S+ QVE CT +++ +C CR W L + C LC P
Sbjct: 96 CGSRCSSD--QVETQACTREQNRICTCRPG-----WYCALSKQEGCRLCAPLRKCRPGFG 148
Query: 771 VQLPCLEKQDTICN-CHSGFFLRDKE----------CVSCVNCKNADCKNLCPATSETRN 917
V P E D +C C G F C NA +C +TS TR+
Sbjct: 149 VARPGTETSDVVCKPCAPGTFSNTTSSTDICRPHQICNVVAIPGNASMDAVCTSTSPTRS 208
>ref|NP_003832.2| tumor necrosis factor receptor superfamily member 10C precursor
[Homo sapiens].
Length = 259
Score = 61.6 bits (148), Expect = 3e-09
Identities = 40/123 (32%), Positives = 56/123 (45%), Gaps = 1/123 (0%)
Frame = +3
Query: 552 CRECDNGT-FTASENHLTQCLSCSKCRSEMSQVEISPCTVDRDTVCGCRKNQYRKYWSET 728
C C G +T + N+ C C+ C+S+ Q S CT+ RDTVC C++ +R S
Sbjct: 66 CNPCTEGVDYTNASNNEPSCFPCTVCKSD--QKHKSSCTMTRDTVCQCKEGTFRNENSPE 123
Query: 729 LFQCLNCSLCPNGTVQLPCLEKQDTICNCHSGFFLRDKECVSCVNCKNADCKNLCPATSE 908
+ C CS CP+G VQ + NC S + + CV A+ PA E
Sbjct: 124 M--CRKCSRCPSGEVQ---------VSNCTSW------DDIQCVEEFGANATVETPAAEE 166
Query: 909 TRN 917
T N
Sbjct: 167 TMN 169
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 80,141,744
Number of extensions: 2505632
Number of successful extensions: 16190
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 15715
Number of HSP's successfully gapped: 22
Length of query: 663
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 554
Effective length of database: 14,704,088
Effective search space: 8146064752
Effective search space used: 8146064752
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012710
(1991 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 1005 0.0
>Sscrofa_Chr05
|| Length = 111506441
Score = 1005 bits (507), Expect = 0.0
Identities = 513/515 (99%)
Strand = Plus / Plus
Query: 1389 gcggacccagcgacactgtacgcggtggtggacggcgtgcctccgacgcgctggaaggag 1448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66792307 gcggacccagcgacactgtacgcggtggtggacggcgtgcctccgacgcgctggaaggag 66792366
Query: 1449 ttcgtgcggcggctggggctgagcgagcacgagatcgagcggctggagctgcagaacggg 1508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66792367 ttcgtgcggcggctggggctgagcgagcacgagatcgagcggctggagctgcagaacggg 66792426
Query: 1509 cgctgtctgcgcgaggcgcagtacagcatgctggcggagtggcggcggcgcacttcgcga 1568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66792427 cgctgtctgcgcgaggcgcagtacagcatgctggcggagtggcggcggcgcacttcgcga 66792486
Query: 1569 cgcgaggccacgctggagctgctgggcagcgtgctccgcgacatggacctgctcggctgc 1628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66792487 cgcgaggccacgctggagctgctgggcagcgtgctccgcgacatggacctgctcggctgc 66792546
Query: 1629 ctggaggacatcgaggaggcgctgcggggccccgcccgcctagcgcccgcgccacacctt 1688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66792547 ctggaggacatcgaggaggcgctgcggggccccgcccgcctagcgcccgcgccacacctt 66792606
Query: 1689 ctccgatgaggccacgccccgcctgctggaagccgccctgaggactgctgcttcctgccc 1748
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 66792607 ctccgatgaggccacgccccgcctcctggaggccgccctgaggactgctgcttcctgccc 66792666
Query: 1749 cgggcagccctaggaagacctgcgagatgccctttggactccctttttctggagaggaag 1808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66792667 cgggcagccctaggaagacctgcgagatgccctttggactccctttttctggagaggaag 66792726
Query: 1809 ggtcttggaggggcaggcgtgatttggcagccacttacctggtgctacacccttagtgta 1868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66792727 ggtcttggaggggcaggcgtgatttggcagccacttacctggtgctacacccttagtgta 66792786
Query: 1869 catagcttttctcagctgtctgagcccgaagggca 1903
|||||||||||||||||||||||||||||||||||
Sbjct: 66792787 catagcttttctcagctgtctgagcccgaagggca 66792821
Score = 565 bits (285), Expect = e-158
Identities = 291/293 (99%)
Strand = Plus / Plus
Query: 61 ggcttgacttttctgagttctccgaactctggctccaaagctggccttccgggtttgagg 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 66780475 ggcttgacttttctgagttctccgaactctggctccaaaactggccttccgggtttgagg 66780534
Query: 121 ttccccgggaccaggccgtgattctctgccccaggctcaaccctcagctccctcgcccaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66780535 ttccccgggaccaggccgtgattctctgccccaggctcaaccctcagctccctcgcccaa 66780594
Query: 181 ccctccggctccacttgggacctccggaccctgctcctcctgggacggtatcgactgtcg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66780595 ccctccggctccacttgggacctccggaccctgctcctcctgggacggtatcgactgtcg 66780654
Query: 241 cctcggtccgccgtcactgtcgccactgcctgagccctgatgggggagtgagaggccaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 66780655 cctcggtccgccgtcactgtcgccactgcctgagccctgatgggggagtgagaggacaca 66780714
Query: 301 gctggccggacatgggcctccccaccgtccctggcctgctgctgccactggtg 353
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66780715 gctggccggacatgggcctccccaccgtccctggcctgctgctgccactggtg 66780767
Score = 486 bits (245), Expect = e-134
Identities = 299/318 (94%), Gaps = 4/318 (1%)
Strand = Plus / Plus
Query: 1075 agggagagccggagcccctggccacagctccaagcttcggtcccatcacgactttcagtc 1134
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66791863 agggagagccggagccc-tggccacagctccaagcttcggtcccatcacgactttcagtc 66791921
Query: 1135 ccatcccaagcttcagtcccaccacgaccttcagtcctgtccc-aagcttcagtcccatc 1193
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 66791922 ccatcccaagcttcagtcccaccacgaccttcagtcctgtcccaaagcttcagtcccatc 66791981
Query: 1194 tccagtcccaccttcaccccgtgtgactggtccaacatcaaagtcacatcacctcccaaa 1253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66791982 tccagtcccaccttcaccccgtgtgactggtccaacatcaaagtcacatcacctcccaaa 66792041
Query: 1254 gagatcgcccc--gnnnnnnnagggggctggccccattctccctatgcctccagcttcca 1311
||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 66792042 gagatcgcccccgccccccccagggggctggccccattctccctatgcctccagcttcca 66792101
Query: 1312 cccctgtccccacccctcttccgaagtnnnnnnncagcgcccacagcgcccacagcgccc 1371
||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 66792102 cccctgtccccacccctcttccgaagtgggggggcagcgcccacagcgcccacagcgccc 66792161
Query: 1372 ctgctcagctcgcagacg 1389
||||||||||||||||||
Sbjct: 66792162 ctgctcagctcgcagacg 66792179
Score = 301 bits (152), Expect = 8e-79
Identities = 155/156 (99%)
Strand = Plus / Plus
Query: 350 ggtgctccgggctctgttggtggatgtgtaccccgcaggggtccacgggctggtccttca 409
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 66788161 ggtgctccgggctctgttggtggatgtgtaccctgcaggggtccacgggctggtccttca 66788220
Query: 410 ccctggggaccgggagaagagagagagtttgtgtccccaaggaaaatacagccaccctca 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66788221 ccctggggaccgggagaagagagagagtttgtgtccccaaggaaaatacagccaccctca 66788280
Query: 470 aaataggtccatttgctgcacgaagtgccacaaagg 505
||||||||||||||||||||||||||||||||||||
Sbjct: 66788281 aaataggtccatttgctgcacgaagtgccacaaagg 66788316
Score = 301 bits (152), Expect = 8e-79
Identities = 152/152 (100%)
Strand = Plus / Plus
Query: 633 gaaatgtcccaggtggagatttctccgtgcacagtggaccgggacaccgtgtgtggctgc 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66788904 gaaatgtcccaggtggagatttctccgtgcacagtggaccgggacaccgtgtgtggctgc 66788963
Query: 693 agaaagaaccagtaccggaagtactggagtgagactcttttccagtgtctgaactgcagc 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66788964 agaaagaaccagtaccggaagtactggagtgagactcttttccagtgtctgaactgcagc 66789023
Query: 753 ctctgccccaacggcacagtgcaactcccctg 784
||||||||||||||||||||||||||||||||
Sbjct: 66789024 ctctgccccaacggcacagtgcaactcccctg 66789055
Score = 260 bits (131), Expect = 3e-66
Identities = 131/131 (100%)
Strand = Plus / Plus
Query: 503 aggcacctacctacacaatgactgtctgggcccggggctggacacggactgcagggagtg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66788550 aggcacctacctacacaatgactgtctgggcccggggctggacacggactgcagggagtg 66788609
Query: 563 cgacaatggcaccttcactgcatcagagaaccacctcacacaatgcctgagctgctccaa 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66788610 cgacaatggcaccttcactgcatcagagaaccacctcacacaatgcctgagctgctccaa 66788669
Query: 623 gtgccggagtg 633
|||||||||||
Sbjct: 66788670 gtgccggagtg 66788680
Score = 232 bits (117), Expect = 6e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 931 caggcaccacggtgctgttgccgctggtgatcttctttggtctttgcctggcattcttcc 990
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66791285 caggcaccacggtgctgttgccgctggtgatcttctttggtctttgcctggcattcttcc 66791344
Query: 991 tcttcgttggcttagcttgccgctaccaacggtggaaaccaaagctctactccatta 1047
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66791345 tcttcgttggcttagcttgccgctaccaacggtggaaaccaaagctctactccatta 66791401
Score = 157 bits (79), Expect = 3e-35
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 784 gcctggagaaacaggacaccatctgcaactgccactcggggttctttctaagagataagg 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66789181 gcctggagaaacaggacaccatctgcaactgccactcggggttctttctaagagataagg 66789240
Query: 844 agtgtgtctcctgtgttaa 862
|||||||||||||||||||
Sbjct: 66789241 agtgtgtctcctgtgttaa 66789259
Score = 143 bits (72), Expect = 4e-31
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 863 ctgtaagaacgcagactgcaagaatttatgtccagccacatctgaaactcgtaacgactt 922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66791108 ctgtaagaacgcagactgcaagaatttatgtccagccacatctgaaactcgtaacgactt 66791167
Query: 923 tcaggacacagg 934
||||||||||||
Sbjct: 66791168 tcaggacacagg 66791179
Score = 81.8 bits (41), Expect = 1e-12
Identities = 47/49 (95%)
Strand = Plus / Plus
Query: 1943 tgtgttaaatgtggagtgtgtgtgcttgtgagagaggctgaatgtgcca 1991
||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 66792877 tgtgttagatgtggagtgtgtgtgctcgtgagagaggctgaatgtgcca 66792925
Score = 67.9 bits (34), Expect = 2e-08
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 1942 atgtgttaaatgtggagtgtgtgtgcttgtgagagaggctgaatgtgcca 1991
|||||||| | |||||||||||||||| |||||||||||||||||||||
Sbjct: 66792945 atgtgttagaggtggagtgtgtgtgctcctgagagaggctgaatgtgcca 66792994
Score = 60.0 bits (30), Expect = 5e-06
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1048 tttgtgggaaatcgactcctgtaaaggagg 1077
||||||||||||||||||||||||||||||
Sbjct: 66791705 tttgtgggaaatcgactcctgtaaaggagg 66791734
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 50,313,868
Number of extensions: 358
Number of successful extensions: 358
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 355
Number of HSP's successfully gapped: 13
Length of query: 1991
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1969
Effective length of database: 2,808,408,574
Effective search space: 5529756482206
Effective search space used: 5529756482206
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)