Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012712
(1132 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030524.1| actin-related protein 2/3 complex subunit 5 ... 292 3e-79
Alignment gi|NP_001029909.1| actin-related protein 2/3 complex subunit 5-... 213 2e-55
>ref|NP_001030524.1| actin-related protein 2/3 complex subunit 5 [Bos taurus].
Length = 151
Score = 292 bits (748), Expect = 3e-79
Identities = 149/151 (98%), Positives = 150/151 (99%)
Frame = +1
Query: 160 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLRQGNMTAALQAALK 339
MSKNTVSSARFRKVDV EYDENKFVDEEDGGDGQAGPDEGEVDSCLRQGNMTAALQAALK
Sbjct: 1 MSKNTVSSARFRKVDVGEYDENKFVDEEDGGDGQAGPDEGEVDSCLRQGNMTAALQAALK 60
Query: 340 NPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPSDN 519
NPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPSDN
Sbjct: 61 NPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPSDN 120
Query: 520 SSAMLLQWHEKALAAGGVGSIVRVLTARKTV 612
SSA+LLQWHEKALAAGGVGSIVRVLTARKTV
Sbjct: 121 SSAVLLQWHEKALAAGGVGSIVRVLTARKTV 151
>ref|NP_001029909.1| actin-related protein 2/3 complex subunit 5-like protein [Bos
taurus].
Length = 153
Score = 213 bits (543), Expect = 2e-55
Identities = 105/154 (68%), Positives = 132/154 (85%), Gaps = 3/154 (1%)
Frame = +1
Query: 160 MSKNTVSSARFRKVDVDEYDENKFVDEED---GGDGQAGPDEGEVDSCLRQGNMTAALQA 330
M++NT+SS RFR+VD+DE+DENKFVDE++ G+ GPD EVD LRQG+M A A
Sbjct: 1 MARNTLSS-RFRRVDIDEFDENKFVDEQEEAAAAAGEPGPDPSEVDGLLRQGDMLRAFHA 59
Query: 331 ALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESP 510
AL+N P+NTK+QAVK+RA +VLKVL +FK+++IE+AVQSLD+NG+DLLMKYIYKGFE P
Sbjct: 60 ALRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGIDLLMKYIYKGFEKP 119
Query: 511 SDNSSAMLLQWHEKALAAGGVGSIVRVLTARKTV 612
++NSSA+LLQWHEKALA GG+GSI+RVLTARKTV
Sbjct: 120 TENSSAVLLQWHEKALAVGGLGSIIRVLTARKTV 153
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,199,427
Number of extensions: 951016
Number of successful extensions: 3351
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3349
Number of HSP's successfully gapped: 2
Length of query: 377
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 273
Effective length of database: 14,240,222
Effective search space: 3887580606
Effective search space used: 3887580606
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012712
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012712
(1132 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537159.2| PREDICTED: similar to Actin-related protein 2/3... 286 2e-77
Alignment gi|XP_851346.1| PREDICTED: similar to actin related protein 2/3... 213 2e-55
Alignment gi|XP_863555.1| PREDICTED: similar to actin related protein 2/3... 203 3e-52
Alignment gi|XP_863531.1| PREDICTED: similar to actin related protein 2/3... 202 4e-52
>ref|XP_537159.2| PREDICTED: similar to Actin-related protein 2/3 complex subunit 5
(ARP2/3 complex 16 kDa subunit) (p16-ARC) [Canis
familiaris].
Length = 154
Score = 286 bits (733), Expect = 2e-77
Identities = 149/154 (96%), Positives = 150/154 (97%), Gaps = 3/154 (1%)
Frame = +1
Query: 160 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLRQ---GNMTAALQA 330
MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLRQ NMTAALQA
Sbjct: 1 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLRQYPWRNMTAALQA 60
Query: 331 ALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESP 510
ALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESP
Sbjct: 61 ALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESP 120
Query: 511 SDNSSAMLLQWHEKALAAGGVGSIVRVLTARKTV 612
SDNSSA+LLQWHEKALAAGGVGSIVRVLTARKTV
Sbjct: 121 SDNSSAVLLQWHEKALAAGGVGSIVRVLTARKTV 154
>ref|XP_851346.1| PREDICTED: similar to actin related protein 2/3 complex, subunit
5-like isoform 1 [Canis familiaris].
Length = 153
Score = 213 bits (543), Expect = 2e-55
Identities = 106/154 (68%), Positives = 132/154 (85%), Gaps = 3/154 (1%)
Frame = +1
Query: 160 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQA---GPDEGEVDSCLRQGNMTAALQA 330
M++NT+SS RFR+VD+DE+DENKFVDE++ A GPD GEVD LRQG+M A A
Sbjct: 1 MARNTLSS-RFRRVDIDEFDENKFVDEQEEAAAAAAEPGPDPGEVDGLLRQGDMLRAFHA 59
Query: 331 ALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESP 510
AL+N P+NTK+QAVK+RA +VLKVL +FK+++IE+AVQSLD+NG+DLLMKYIYKGFE P
Sbjct: 60 ALRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGIDLLMKYIYKGFEKP 119
Query: 511 SDNSSAMLLQWHEKALAAGGVGSIVRVLTARKTV 612
++NSSA+LLQWHEKALA GG+GSI+RVLTARKTV
Sbjct: 120 TENSSAVLLQWHEKALAVGGLGSIIRVLTARKTV 153
>ref|XP_863555.1| PREDICTED: similar to actin related protein 2/3 complex, subunit
5-like isoform 3 [Canis familiaris].
Length = 169
Score = 203 bits (516), Expect = 3e-52
Identities = 106/170 (62%), Positives = 132/170 (77%), Gaps = 19/170 (11%)
Frame = +1
Query: 160 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQA---GPDEGEVDSCLRQ--------- 303
M++NT+SS RFR+VD+DE+DENKFVDE++ A GPD GEVD LRQ
Sbjct: 1 MARNTLSS-RFRRVDIDEFDENKFVDEQEEAAAAAAEPGPDPGEVDGLLRQYPYPAQRPG 59
Query: 304 -------GNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKN 462
G+M A AAL+N P+NTK+QAVK+RA +VLKVL +FK+++IE+AVQSLD+N
Sbjct: 60 WREEEGTGDMLRAFHAALRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRN 119
Query: 463 GVDLLMKYIYKGFESPSDNSSAMLLQWHEKALAAGGVGSIVRVLTARKTV 612
G+DLLMKYIYKGFE P++NSSA+LLQWHEKALA GG+GSI+RVLTARKTV
Sbjct: 120 GIDLLMKYIYKGFEKPTENSSAVLLQWHEKALAVGGLGSIIRVLTARKTV 169
>ref|XP_863531.1| PREDICTED: similar to actin related protein 2/3 complex, subunit
5-like isoform 2 [Canis familiaris].
Length = 162
Score = 202 bits (515), Expect = 4e-52
Identities = 105/163 (64%), Positives = 131/163 (80%), Gaps = 12/163 (7%)
Frame = +1
Query: 160 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQA---GPDEGEVDSCLRQ--------- 303
M++NT+SS RFR+VD+DE+DENKFVDE++ A GPD GEVD LRQ
Sbjct: 1 MARNTLSS-RFRRVDIDEFDENKFVDEQEEAAAAAAEPGPDPGEVDGLLRQYPYPAQRPG 59
Query: 304 GNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMK 483
+M A AAL+N P+NTK+QAVK+RA +VLKVL +FK+++IE+AVQSLD+NG+DLLMK
Sbjct: 60 WDMLRAFHAALRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGIDLLMK 119
Query: 484 YIYKGFESPSDNSSAMLLQWHEKALAAGGVGSIVRVLTARKTV 612
YIYKGFE P++NSSA+LLQWHEKALA GG+GSI+RVLTARKTV
Sbjct: 120 YIYKGFEKPTENSSAVLLQWHEKALAVGGLGSIIRVLTARKTV 162
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,885,656
Number of extensions: 982039
Number of successful extensions: 3440
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3430
Number of HSP's successfully gapped: 4
Length of query: 377
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 273
Effective length of database: 15,407,560
Effective search space: 4206263880
Effective search space used: 4206263880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012712
(1132 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001127829.1| actin-related protein 2/3 complex subunit 5 ... 296 1e-80
Alignment gi|XP_003353710.1| PREDICTED: actin-related protein 2/3 complex... 211 6e-55
Alignment gi|NP_001172063.1| actin related protein 2/3 complex subunit 5-... 211 6e-55
>ref|NP_001127829.1| actin-related protein 2/3 complex subunit 5 [Sus scrofa].
Length = 151
Score = 296 bits (759), Expect = 1e-80
Identities = 151/151 (100%), Positives = 151/151 (100%)
Frame = +1
Query: 160 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLRQGNMTAALQAALK 339
MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLRQGNMTAALQAALK
Sbjct: 1 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLRQGNMTAALQAALK 60
Query: 340 NPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPSDN 519
NPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPSDN
Sbjct: 61 NPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPSDN 120
Query: 520 SSAMLLQWHEKALAAGGVGSIVRVLTARKTV 612
SSAMLLQWHEKALAAGGVGSIVRVLTARKTV
Sbjct: 121 SSAMLLQWHEKALAAGGVGSIVRVLTARKTV 151
>ref|XP_003353710.1| PREDICTED: actin-related protein 2/3 complex subunit 5-like
protein-like [Sus scrofa].
Length = 153
Score = 211 bits (537), Expect = 6e-55
Identities = 105/154 (68%), Positives = 131/154 (85%), Gaps = 3/154 (1%)
Frame = +1
Query: 160 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQA---GPDEGEVDSCLRQGNMTAALQA 330
M++NT+SS RFR+VD+DE+DENKFVDE++ A GPD EVD LRQG+M A A
Sbjct: 1 MARNTLSS-RFRRVDIDEFDENKFVDEQEEAAAAAAEPGPDPSEVDGLLRQGDMLRAFHA 59
Query: 331 ALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESP 510
AL+N P+NTK+QAVK+RA +VLKVL +FK+++IE+AVQSLD+NG+DLLMKYIYKGFE P
Sbjct: 60 ALRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGIDLLMKYIYKGFEKP 119
Query: 511 SDNSSAMLLQWHEKALAAGGVGSIVRVLTARKTV 612
++NSSA+LLQWHEKALA GG+GSI+RVLTARKTV
Sbjct: 120 TENSSAVLLQWHEKALAVGGLGSIIRVLTARKTV 153
>ref|NP_001172063.1| actin related protein 2/3 complex subunit 5-like protein [Sus
scrofa].
Length = 153
Score = 211 bits (537), Expect = 6e-55
Identities = 105/154 (68%), Positives = 131/154 (85%), Gaps = 3/154 (1%)
Frame = +1
Query: 160 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQA---GPDEGEVDSCLRQGNMTAALQA 330
M++NT+SS RFR+VD+DE+DENKFVDE++ A GPD EVD LRQG+M A A
Sbjct: 1 MARNTLSS-RFRRVDIDEFDENKFVDEQEEAAAAAAEPGPDPSEVDGLLRQGDMLRAFHA 59
Query: 331 ALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESP 510
AL+N P+NTK+QAVK+RA +VLKVL +FK+++IE+AVQSLD+NG+DLLMKYIYKGFE P
Sbjct: 60 ALRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGIDLLMKYIYKGFEKP 119
Query: 511 SDNSSAMLLQWHEKALAAGGVGSIVRVLTARKTV 612
++NSSA+LLQWHEKALA GG+GSI+RVLTARKTV
Sbjct: 120 TENSSAVLLQWHEKALAVGGLGSIIRVLTARKTV 153
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,590,914
Number of extensions: 611089
Number of successful extensions: 2177
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2171
Number of HSP's successfully gapped: 3
Length of query: 377
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 276
Effective length of database: 8,829,335
Effective search space: 2436896460
Effective search space used: 2436896460
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012712
(1132 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080645.2| actin-related protein 2/3 complex subunit 5 [Mu... 295 4e-80
Alignment gi|NP_083085.1| actin-related protein 2/3 complex subunit 5-lik... 212 5e-55
>ref|NP_080645.2| actin-related protein 2/3 complex subunit 5 [Mus musculus].
Length = 151
Score = 295 bits (755), Expect = 4e-80
Identities = 150/151 (99%), Positives = 151/151 (100%)
Frame = +1
Query: 160 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLRQGNMTAALQAALK 339
MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLRQGNMTAALQAALK
Sbjct: 1 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLRQGNMTAALQAALK 60
Query: 340 NPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPSDN 519
NPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPSDN
Sbjct: 61 NPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPSDN 120
Query: 520 SSAMLLQWHEKALAAGGVGSIVRVLTARKTV 612
SSA+LLQWHEKALAAGGVGSIVRVLTARKTV
Sbjct: 121 SSAVLLQWHEKALAAGGVGSIVRVLTARKTV 151
>ref|NP_083085.1| actin-related protein 2/3 complex subunit 5-like protein [Mus
musculus].
Length = 153
Score = 212 bits (539), Expect = 5e-55
Identities = 106/154 (68%), Positives = 131/154 (85%), Gaps = 3/154 (1%)
Frame = +1
Query: 160 MSKNTVSSARFRKVDVDEYDENKFVDEED---GGDGQAGPDEGEVDSCLRQGNMTAALQA 330
M++NT+SS RFR+VD+DE+DENKFVDE + G+ GPD EVD LRQG+M A A
Sbjct: 1 MARNTLSS-RFRRVDIDEFDENKFVDEHEEAAAAAGEPGPDPCEVDGLLRQGDMLRAFHA 59
Query: 331 ALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESP 510
AL+N PINTK+QAVK+RA +VLKVL +FK+++IE+AVQSLD+NG+DLLMKYIYKGFE P
Sbjct: 60 ALRNSPINTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGIDLLMKYIYKGFEKP 119
Query: 511 SDNSSAMLLQWHEKALAAGGVGSIVRVLTARKTV 612
++NSSA+LLQWHEKALA GG+GSI+RVLTARKTV
Sbjct: 120 TENSSAVLLQWHEKALAVGGLGSIIRVLTARKTV 153
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,387,122
Number of extensions: 817242
Number of successful extensions: 2791
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2782
Number of HSP's successfully gapped: 2
Length of query: 377
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 274
Effective length of database: 12,523,851
Effective search space: 3431535174
Effective search space used: 3431535174
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012712
(1132 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005708.1| actin-related protein 2/3 complex subunit 5 [Ho... 296 2e-80
Alignment gi|NP_112240.1| actin-related protein 2/3 complex subunit 5-lik... 211 8e-55
>ref|NP_005708.1| actin-related protein 2/3 complex subunit 5 [Homo sapiens].
Length = 151
Score = 296 bits (759), Expect = 2e-80
Identities = 151/151 (100%), Positives = 151/151 (100%)
Frame = +1
Query: 160 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLRQGNMTAALQAALK 339
MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLRQGNMTAALQAALK
Sbjct: 1 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLRQGNMTAALQAALK 60
Query: 340 NPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPSDN 519
NPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPSDN
Sbjct: 61 NPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPSDN 120
Query: 520 SSAMLLQWHEKALAAGGVGSIVRVLTARKTV 612
SSAMLLQWHEKALAAGGVGSIVRVLTARKTV
Sbjct: 121 SSAMLLQWHEKALAAGGVGSIVRVLTARKTV 151
>ref|NP_112240.1| actin-related protein 2/3 complex subunit 5-like protein [Homo
sapiens].
Length = 153
Score = 211 bits (538), Expect = 8e-55
Identities = 106/154 (68%), Positives = 131/154 (85%), Gaps = 3/154 (1%)
Frame = +1
Query: 160 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQA---GPDEGEVDSCLRQGNMTAALQA 330
M++NT+SS RFR+VD+DE+DENKFVDE++ A GPD EVD LRQG+M A A
Sbjct: 1 MARNTLSS-RFRRVDIDEFDENKFVDEQEEAAAAAAEPGPDPSEVDGLLRQGDMLRAFHA 59
Query: 331 ALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESP 510
AL+N P+NTK+QAVK+RA +VLKVL +FK+++IE+AVQSLD+NGVDLLMKYIYKGFE P
Sbjct: 60 ALRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGVDLLMKYIYKGFEKP 119
Query: 511 SDNSSAMLLQWHEKALAAGGVGSIVRVLTARKTV 612
++NSSA+LLQWHEKALA GG+GSI+RVLTARKTV
Sbjct: 120 TENSSAVLLQWHEKALAVGGLGSIIRVLTARKTV 153
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,208,555
Number of extensions: 965724
Number of successful extensions: 3309
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3305
Number of HSP's successfully gapped: 2
Length of query: 377
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 273
Effective length of database: 14,868,908
Effective search space: 4059211884
Effective search space used: 4059211884
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012712
(1132 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 737 0.0
>Sscrofa_Chr09
|| Length = 153670197
Score = 737 bits (372), Expect = 0.0
Identities = 372/372 (100%)
Strand = Plus / Minus
Query: 551 aggcacttgctgctggaggagtggggtccattgttcgagtcttgactgcaaggaaaaccg 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137169422 aggcacttgctgctggaggagtggggtccattgttcgagtcttgactgcaaggaaaaccg 137169363
Query: 611 tgtagtccagcgggaactggatctctcccatggggtgggagttgctggtacaaagaccaa 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137169362 tgtagtccagcgggaactggatctctcccatggggtgggagttgctggtacaaagaccaa 137169303
Query: 671 aacaaccaaatgccactgctgccctttggcagcatcagtttctctcagctttgccttctt 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137169302 aacaaccaaatgccactgctgccctttggcagcatcagtttctctcagctttgccttctt 137169243
Query: 731 gcttacttttcatatctgtaaagaagaagattacatatcagttttcctttcaagaaaatt 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137169242 gcttacttttcatatctgtaaagaagaagattacatatcagttttcctttcaagaaaatt 137169183
Query: 791 gggatcaaatgtttcaataggagtgtttcatgctctcagaatgatttcagtgatgtgtat 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137169182 gggatcaaatgtttcaataggagtgtttcatgctctcagaatgatttcagtgatgtgtat 137169123
Query: 851 accagtctgtatatagcatcatttacattcaagtttaattgtgcaatttttaacccctat 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137169122 accagtctgtatatagcatcatttacattcaagtttaattgtgcaatttttaacccctat 137169063
Query: 911 tggctgatgcag 922
||||||||||||
Sbjct: 137169062 tggctgatgcag 137169051
Score = 601 bits (303), Expect = e-169
Identities = 303/303 (100%)
Strand = Plus / Minus
Query: 1 agcgcgcaggcccagaaccacccgggccggggctgccggccgacgcctctgagcggaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137178369 agcgcgcaggcccagaaccacccgggccggggctgccggccgacgcctctgagcggaaga 137178310
Query: 61 gggaagtgaaggcggcagtctgcgggtgccagccgggttgggcttgctaaggtagaggca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137178309 gggaagtgaaggcggcagtctgcgggtgccagccgggttgggcttgctaaggtagaggca 137178250
Query: 121 gcaccgaggggaggccttggccgccggtccggatcgaggatgtcgaagaacacggtgtcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137178249 gcaccgaggggaggccttggccgccggtccggatcgaggatgtcgaagaacacggtgtcg 137178190
Query: 181 tcggcccggttccggaaggtagacgtggatgagtacgacgagaacaagttcgtggacgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137178189 tcggcccggttccggaaggtagacgtggatgagtacgacgagaacaagttcgtggacgag 137178130
Query: 241 gaagacgggggcgacgggcaggccgggcccgacgagggcgaggtggactcctgcctgcgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137178129 gaagacgggggcgacgggcaggccgggcccgacgagggcgaggtggactcctgcctgcgg 137178070
Query: 301 caa 303
|||
Sbjct: 137178069 caa 137178067
Score = 357 bits (180), Expect = 9e-96
Identities = 180/180 (100%)
Strand = Plus / Minus
Query: 374 aggatcgagcaggcagcattgtcttgaaggtgctcatctcttttaaagctaacgatattg 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137172669 aggatcgagcaggcagcattgtcttgaaggtgctcatctcttttaaagctaacgatattg 137172610
Query: 434 aaaaagcagttcagtccctggacaagaatggcgtggatctgctaatgaagtatatttata 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137172609 aaaaagcagttcagtccctggacaagaatggcgtggatctgctaatgaagtatatttata 137172550
Query: 494 aaggctttgagagcccctctgacaatagcagtgccatgttactacagtggcacgaaaagg 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137172549 aaggctttgagagcccctctgacaatagcagtgccatgttactacagtggcacgaaaagg 137172490
Score = 287 bits (145), Expect = 7e-75
Identities = 155/157 (98%), Gaps = 1/157 (0%)
Strand = Plus / Minus
Query: 977 actaataatgagaaatttgatcaacatttgagactggtttcctaactcattgctagccag 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137168996 actaataatgagaaatttgatcaacatttgagactggtttcctaactcattgctagccag 137168937
Query: 1037 gaaatgatctttattaaaaaatgtttgagaaactggcagcttatagcattgcaaaactgg 1096
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 137168936 gaaatgatctttattaaaaaatgtttgagaaactggcagctaatagcattgcaaaactgg 137168877
Query: 1097 accatacttccctta-ttaaacaaaatgtgtttctgg 1132
||||||||||||||| |||||||||||||||||||||
Sbjct: 137168876 accatacttcccttatttaaacaaaatgtgtttctgg 137168840
Score = 147 bits (74), Expect = 2e-32
Identities = 74/74 (100%)
Strand = Plus / Minus
Query: 303 aggaaacatgacagctgccctacaggcagctctgaaaaacccccctatcaataccaagag 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137175699 aggaaacatgacagctgccctacaggcagctctgaaaaacccccctatcaataccaagag 137175640
Query: 363 tcaggcggtgaagg 376
||||||||||||||
Sbjct: 137175639 tcaggcggtgaagg 137175626
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,405,700
Number of extensions: 223
Number of successful extensions: 223
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 5
Length of query: 1132
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1111
Effective length of database: 2,808,413,156
Effective search space: 3120147016316
Effective search space used: 3120147016316
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)