Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012715
(1606 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030524.1| actin-related protein 2/3 complex subunit 5 ... 292 5e-79
Alignment gi|NP_001029909.1| actin-related protein 2/3 complex subunit 5-... 213 3e-55
>ref|NP_001030524.1| actin-related protein 2/3 complex subunit 5 [Bos taurus].
Length = 151
Score = 292 bits (748), Expect = 5e-79
Identities = 149/151 (98%), Positives = 150/151 (99%)
Frame = +3
Query: 102 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLRQGNMTAALQAALK 281
MSKNTVSSARFRKVDV EYDENKFVDEEDGGDGQAGPDEGEVDSCLRQGNMTAALQAALK
Sbjct: 1 MSKNTVSSARFRKVDVGEYDENKFVDEEDGGDGQAGPDEGEVDSCLRQGNMTAALQAALK 60
Query: 282 NPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPSDN 461
NPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPSDN
Sbjct: 61 NPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPSDN 120
Query: 462 SSAMLLQWHEKALAAGGVGSIVRVLTARKTV 554
SSA+LLQWHEKALAAGGVGSIVRVLTARKTV
Sbjct: 121 SSAVLLQWHEKALAAGGVGSIVRVLTARKTV 151
>ref|NP_001029909.1| actin-related protein 2/3 complex subunit 5-like protein [Bos
taurus].
Length = 153
Score = 213 bits (543), Expect = 3e-55
Identities = 105/154 (68%), Positives = 132/154 (85%), Gaps = 3/154 (1%)
Frame = +3
Query: 102 MSKNTVSSARFRKVDVDEYDENKFVDEED---GGDGQAGPDEGEVDSCLRQGNMTAALQA 272
M++NT+SS RFR+VD+DE+DENKFVDE++ G+ GPD EVD LRQG+M A A
Sbjct: 1 MARNTLSS-RFRRVDIDEFDENKFVDEQEEAAAAAGEPGPDPSEVDGLLRQGDMLRAFHA 59
Query: 273 ALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESP 452
AL+N P+NTK+QAVK+RA +VLKVL +FK+++IE+AVQSLD+NG+DLLMKYIYKGFE P
Sbjct: 60 ALRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGIDLLMKYIYKGFEKP 119
Query: 453 SDNSSAMLLQWHEKALAAGGVGSIVRVLTARKTV 554
++NSSA+LLQWHEKALA GG+GSI+RVLTARKTV
Sbjct: 120 TENSSAVLLQWHEKALAVGGLGSIIRVLTARKTV 153
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 55,791,011
Number of extensions: 1395426
Number of successful extensions: 4367
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4365
Number of HSP's successfully gapped: 2
Length of query: 535
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 428
Effective length of database: 14,140,958
Effective search space: 6052330024
Effective search space used: 6052330024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012715
(1606 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537159.2| PREDICTED: similar to Actin-related protein 2/3... 286 3e-77
Alignment gi|XP_851346.1| PREDICTED: similar to actin related protein 2/3... 213 3e-55
Alignment gi|XP_863555.1| PREDICTED: similar to actin related protein 2/3... 203 4e-52
Alignment gi|XP_863531.1| PREDICTED: similar to actin related protein 2/3... 202 6e-52
>ref|XP_537159.2| PREDICTED: similar to Actin-related protein 2/3 complex subunit 5
(ARP2/3 complex 16 kDa subunit) (p16-ARC) [Canis
familiaris].
Length = 154
Score = 286 bits (733), Expect = 3e-77
Identities = 149/154 (96%), Positives = 150/154 (97%), Gaps = 3/154 (1%)
Frame = +3
Query: 102 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLRQ---GNMTAALQA 272
MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLRQ NMTAALQA
Sbjct: 1 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLRQYPWRNMTAALQA 60
Query: 273 ALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESP 452
ALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESP
Sbjct: 61 ALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESP 120
Query: 453 SDNSSAMLLQWHEKALAAGGVGSIVRVLTARKTV 554
SDNSSA+LLQWHEKALAAGGVGSIVRVLTARKTV
Sbjct: 121 SDNSSAVLLQWHEKALAAGGVGSIVRVLTARKTV 154
>ref|XP_851346.1| PREDICTED: similar to actin related protein 2/3 complex, subunit
5-like isoform 1 [Canis familiaris].
Length = 153
Score = 213 bits (543), Expect = 3e-55
Identities = 106/154 (68%), Positives = 132/154 (85%), Gaps = 3/154 (1%)
Frame = +3
Query: 102 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQA---GPDEGEVDSCLRQGNMTAALQA 272
M++NT+SS RFR+VD+DE+DENKFVDE++ A GPD GEVD LRQG+M A A
Sbjct: 1 MARNTLSS-RFRRVDIDEFDENKFVDEQEEAAAAAAEPGPDPGEVDGLLRQGDMLRAFHA 59
Query: 273 ALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESP 452
AL+N P+NTK+QAVK+RA +VLKVL +FK+++IE+AVQSLD+NG+DLLMKYIYKGFE P
Sbjct: 60 ALRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGIDLLMKYIYKGFEKP 119
Query: 453 SDNSSAMLLQWHEKALAAGGVGSIVRVLTARKTV 554
++NSSA+LLQWHEKALA GG+GSI+RVLTARKTV
Sbjct: 120 TENSSAVLLQWHEKALAVGGLGSIIRVLTARKTV 153
>ref|XP_863555.1| PREDICTED: similar to actin related protein 2/3 complex, subunit
5-like isoform 3 [Canis familiaris].
Length = 169
Score = 203 bits (516), Expect = 4e-52
Identities = 106/170 (62%), Positives = 132/170 (77%), Gaps = 19/170 (11%)
Frame = +3
Query: 102 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQA---GPDEGEVDSCLRQ--------- 245
M++NT+SS RFR+VD+DE+DENKFVDE++ A GPD GEVD LRQ
Sbjct: 1 MARNTLSS-RFRRVDIDEFDENKFVDEQEEAAAAAAEPGPDPGEVDGLLRQYPYPAQRPG 59
Query: 246 -------GNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKN 404
G+M A AAL+N P+NTK+QAVK+RA +VLKVL +FK+++IE+AVQSLD+N
Sbjct: 60 WREEEGTGDMLRAFHAALRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRN 119
Query: 405 GVDLLMKYIYKGFESPSDNSSAMLLQWHEKALAAGGVGSIVRVLTARKTV 554
G+DLLMKYIYKGFE P++NSSA+LLQWHEKALA GG+GSI+RVLTARKTV
Sbjct: 120 GIDLLMKYIYKGFEKPTENSSAVLLQWHEKALAVGGLGSIIRVLTARKTV 169
>ref|XP_863531.1| PREDICTED: similar to actin related protein 2/3 complex, subunit
5-like isoform 2 [Canis familiaris].
Length = 162
Score = 202 bits (515), Expect = 6e-52
Identities = 105/163 (64%), Positives = 131/163 (80%), Gaps = 12/163 (7%)
Frame = +3
Query: 102 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQA---GPDEGEVDSCLRQ--------- 245
M++NT+SS RFR+VD+DE+DENKFVDE++ A GPD GEVD LRQ
Sbjct: 1 MARNTLSS-RFRRVDIDEFDENKFVDEQEEAAAAAAEPGPDPGEVDGLLRQYPYPAQRPG 59
Query: 246 GNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMK 425
+M A AAL+N P+NTK+QAVK+RA +VLKVL +FK+++IE+AVQSLD+NG+DLLMK
Sbjct: 60 WDMLRAFHAALRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGIDLLMK 119
Query: 426 YIYKGFESPSDNSSAMLLQWHEKALAAGGVGSIVRVLTARKTV 554
YIYKGFE P++NSSA+LLQWHEKALA GG+GSI+RVLTARKTV
Sbjct: 120 YIYKGFEKPTENSSAVLLQWHEKALAVGGLGSIIRVLTARKTV 162
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 58,175,649
Number of extensions: 1430859
Number of successful extensions: 4371
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4360
Number of HSP's successfully gapped: 4
Length of query: 535
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 427
Effective length of database: 15,274,216
Effective search space: 6522090232
Effective search space used: 6522090232
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012715
(1606 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001127829.1| actin-related protein 2/3 complex subunit 5 ... 296 2e-80
Alignment gi|XP_003353710.1| PREDICTED: actin-related protein 2/3 complex... 211 9e-55
Alignment gi|NP_001172063.1| actin related protein 2/3 complex subunit 5-... 211 9e-55
>ref|NP_001127829.1| actin-related protein 2/3 complex subunit 5 [Sus scrofa].
Length = 151
Score = 296 bits (759), Expect = 2e-80
Identities = 151/151 (100%), Positives = 151/151 (100%)
Frame = +3
Query: 102 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLRQGNMTAALQAALK 281
MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLRQGNMTAALQAALK
Sbjct: 1 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLRQGNMTAALQAALK 60
Query: 282 NPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPSDN 461
NPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPSDN
Sbjct: 61 NPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPSDN 120
Query: 462 SSAMLLQWHEKALAAGGVGSIVRVLTARKTV 554
SSAMLLQWHEKALAAGGVGSIVRVLTARKTV
Sbjct: 121 SSAMLLQWHEKALAAGGVGSIVRVLTARKTV 151
>ref|XP_003353710.1| PREDICTED: actin-related protein 2/3 complex subunit 5-like
protein-like [Sus scrofa].
Length = 153
Score = 211 bits (537), Expect = 9e-55
Identities = 105/154 (68%), Positives = 131/154 (85%), Gaps = 3/154 (1%)
Frame = +3
Query: 102 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQA---GPDEGEVDSCLRQGNMTAALQA 272
M++NT+SS RFR+VD+DE+DENKFVDE++ A GPD EVD LRQG+M A A
Sbjct: 1 MARNTLSS-RFRRVDIDEFDENKFVDEQEEAAAAAAEPGPDPSEVDGLLRQGDMLRAFHA 59
Query: 273 ALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESP 452
AL+N P+NTK+QAVK+RA +VLKVL +FK+++IE+AVQSLD+NG+DLLMKYIYKGFE P
Sbjct: 60 ALRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGIDLLMKYIYKGFEKP 119
Query: 453 SDNSSAMLLQWHEKALAAGGVGSIVRVLTARKTV 554
++NSSA+LLQWHEKALA GG+GSI+RVLTARKTV
Sbjct: 120 TENSSAVLLQWHEKALAVGGLGSIIRVLTARKTV 153
>ref|NP_001172063.1| actin related protein 2/3 complex subunit 5-like protein [Sus
scrofa].
Length = 153
Score = 211 bits (537), Expect = 9e-55
Identities = 105/154 (68%), Positives = 131/154 (85%), Gaps = 3/154 (1%)
Frame = +3
Query: 102 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQA---GPDEGEVDSCLRQGNMTAALQA 272
M++NT+SS RFR+VD+DE+DENKFVDE++ A GPD EVD LRQG+M A A
Sbjct: 1 MARNTLSS-RFRRVDIDEFDENKFVDEQEEAAAAAAEPGPDPSEVDGLLRQGDMLRAFHA 59
Query: 273 ALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESP 452
AL+N P+NTK+QAVK+RA +VLKVL +FK+++IE+AVQSLD+NG+DLLMKYIYKGFE P
Sbjct: 60 ALRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGIDLLMKYIYKGFEKP 119
Query: 453 SDNSSAMLLQWHEKALAAGGVGSIVRVLTARKTV 554
++NSSA+LLQWHEKALA GG+GSI+RVLTARKTV
Sbjct: 120 TENSSAVLLQWHEKALAVGGLGSIIRVLTARKTV 153
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,850,644
Number of extensions: 891855
Number of successful extensions: 2776
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2768
Number of HSP's successfully gapped: 3
Length of query: 535
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 431
Effective length of database: 8,754,644
Effective search space: 3773251564
Effective search space used: 3773251564
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012715
(1606 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080645.2| actin-related protein 2/3 complex subunit 5 [Mu... 295 7e-80
Alignment gi|NP_083085.1| actin-related protein 2/3 complex subunit 5-lik... 212 8e-55
>ref|NP_080645.2| actin-related protein 2/3 complex subunit 5 [Mus musculus].
Length = 151
Score = 295 bits (755), Expect = 7e-80
Identities = 150/151 (99%), Positives = 151/151 (100%)
Frame = +3
Query: 102 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLRQGNMTAALQAALK 281
MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLRQGNMTAALQAALK
Sbjct: 1 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLRQGNMTAALQAALK 60
Query: 282 NPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPSDN 461
NPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPSDN
Sbjct: 61 NPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPSDN 120
Query: 462 SSAMLLQWHEKALAAGGVGSIVRVLTARKTV 554
SSA+LLQWHEKALAAGGVGSIVRVLTARKTV
Sbjct: 121 SSAVLLQWHEKALAAGGVGSIVRVLTARKTV 151
>ref|NP_083085.1| actin-related protein 2/3 complex subunit 5-like protein [Mus
musculus].
Length = 153
Score = 212 bits (539), Expect = 8e-55
Identities = 106/154 (68%), Positives = 131/154 (85%), Gaps = 3/154 (1%)
Frame = +3
Query: 102 MSKNTVSSARFRKVDVDEYDENKFVDEED---GGDGQAGPDEGEVDSCLRQGNMTAALQA 272
M++NT+SS RFR+VD+DE+DENKFVDE + G+ GPD EVD LRQG+M A A
Sbjct: 1 MARNTLSS-RFRRVDIDEFDENKFVDEHEEAAAAAGEPGPDPCEVDGLLRQGDMLRAFHA 59
Query: 273 ALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESP 452
AL+N PINTK+QAVK+RA +VLKVL +FK+++IE+AVQSLD+NG+DLLMKYIYKGFE P
Sbjct: 60 ALRNSPINTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGIDLLMKYIYKGFEKP 119
Query: 453 SDNSSAMLLQWHEKALAAGGVGSIVRVLTARKTV 554
++NSSA+LLQWHEKALA GG+GSI+RVLTARKTV
Sbjct: 120 TENSSAVLLQWHEKALAVGGLGSIIRVLTARKTV 153
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 48,970,655
Number of extensions: 1214813
Number of successful extensions: 3654
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3644
Number of HSP's successfully gapped: 2
Length of query: 535
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 429
Effective length of database: 12,433,743
Effective search space: 5334075747
Effective search space used: 5334075747
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012715
(1606 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005708.1| actin-related protein 2/3 complex subunit 5 [Ho... 296 3e-80
Alignment gi|NP_112240.1| actin-related protein 2/3 complex subunit 5-lik... 211 1e-54
>ref|NP_005708.1| actin-related protein 2/3 complex subunit 5 [Homo sapiens].
Length = 151
Score = 296 bits (759), Expect = 3e-80
Identities = 151/151 (100%), Positives = 151/151 (100%)
Frame = +3
Query: 102 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLRQGNMTAALQAALK 281
MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLRQGNMTAALQAALK
Sbjct: 1 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLRQGNMTAALQAALK 60
Query: 282 NPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPSDN 461
NPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPSDN
Sbjct: 61 NPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPSDN 120
Query: 462 SSAMLLQWHEKALAAGGVGSIVRVLTARKTV 554
SSAMLLQWHEKALAAGGVGSIVRVLTARKTV
Sbjct: 121 SSAMLLQWHEKALAAGGVGSIVRVLTARKTV 151
>ref|NP_112240.1| actin-related protein 2/3 complex subunit 5-like protein [Homo
sapiens].
Length = 153
Score = 211 bits (538), Expect = 1e-54
Identities = 106/154 (68%), Positives = 131/154 (85%), Gaps = 3/154 (1%)
Frame = +3
Query: 102 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQA---GPDEGEVDSCLRQGNMTAALQA 272
M++NT+SS RFR+VD+DE+DENKFVDE++ A GPD EVD LRQG+M A A
Sbjct: 1 MARNTLSS-RFRRVDIDEFDENKFVDEQEEAAAAAAEPGPDPSEVDGLLRQGDMLRAFHA 59
Query: 273 ALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESP 452
AL+N P+NTK+QAVK+RA +VLKVL +FK+++IE+AVQSLD+NGVDLLMKYIYKGFE P
Sbjct: 60 ALRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGVDLLMKYIYKGFEKP 119
Query: 453 SDNSSAMLLQWHEKALAAGGVGSIVRVLTARKTV 554
++NSSA+LLQWHEKALA GG+GSI+RVLTARKTV
Sbjct: 120 TENSSAVLLQWHEKALAVGGLGSIIRVLTARKTV 153
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 57,257,131
Number of extensions: 1419425
Number of successful extensions: 4224
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4220
Number of HSP's successfully gapped: 2
Length of query: 535
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 428
Effective length of database: 14,770,016
Effective search space: 6321566848
Effective search space used: 6321566848
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012715
(1606 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 1195 0.0
>Sscrofa_Chr09
|| Length = 153670197
Score = 1195 bits (603), Expect = 0.0
Identities = 616/619 (99%), Gaps = 1/619 (0%)
Strand = Plus / Minus
Query: 919 actaataatgagaaatttgatcaacatttgagactggtttcctaactcattgctagccag 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137168996 actaataatgagaaatttgatcaacatttgagactggtttcctaactcattgctagccag 137168937
Query: 979 gaaatgatctttattaaaaaatgtttgagaaactggcagctaatagcattgcaaaactgg 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137168936 gaaatgatctttattaaaaaatgtttgagaaactggcagctaatagcattgcaaaactgg 137168877
Query: 1039 accatacttcccttatttaaacaaaatgtgtttctggaacaagtggcagctgaacccgac 1098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137168876 accatacttcccttatttaaacaaaatgtgtttctggaacaagtggcagctgaacccgac 137168817
Query: 1099 caagttccagctcttgtttctgcttgcctccagattatgtgagtttaaggacacttcttc 1158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137168816 caagttccagctcttgtttctgcttgcctccagattatgtgagtttaaggacacttcttc 137168757
Query: 1159 ctctcagcatcgaataatcgtggcctcttgatttctttgtggtcacccagggtatagagc 1218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137168756 ctctcagcatcgaataatcgtggcctcttgatttctttgtggtcacccagggtatagagc 137168697
Query: 1219 aaggaatcttgctctccgcaaatgtgtctgtaaaatgccagagcctgtttgacatgagca 1278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137168696 aaggaatcttgctctccgcaaatgtgtctgtaaaatgccagagcctgtttgacatgagca 137168637
Query: 1279 taatactttttgttctaatagtatggccctattcggggaaactccaattcagaaaggttg 1338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137168636 taatactttttgttctaatagtatggccctattcggggaaactccaattcagaaaggttg 137168577
Query: 1339 tagaaactatgaagtagttcaaacctgggcagccaattctttagaattatagcggctgcc 1398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137168576 tagaaactatgaagtagttcaaacctgggcagccaattctttagaattatagcggctgcc 137168517
Query: 1399 ttcaacgttccgaggtatataatagtatttaatatgtcctataaatgtcttcagtgttct 1458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137168516 ttcaacgttccgaggtatataatagtatttaatatgtcctataaatgtcttcagtgttct 137168457
Query: 1459 tcagggtaattgggatcacaaaaggtttgggttcggatccaaacagatgcacattctgta 1518
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 137168456 tcagggtaattgggatcacaaaaggttt-ggttcggatccaaacagatgcacattctgta 137168398
Query: 1519 ttttagctcaaggtttttt 1537
|||||||||| |||||||
Sbjct: 137168397 ttttagctcagtgtttttt 137168379
Score = 737 bits (372), Expect = 0.0
Identities = 372/372 (100%)
Strand = Plus / Minus
Query: 493 aggcacttgctgctggaggagtggggtccattgttcgagtcttgactgcaaggaaaaccg 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137169422 aggcacttgctgctggaggagtggggtccattgttcgagtcttgactgcaaggaaaaccg 137169363
Query: 553 tgtagtccagcgggaactggatctctcccatggggtgggagttgctggtacaaagaccaa 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137169362 tgtagtccagcgggaactggatctctcccatggggtgggagttgctggtacaaagaccaa 137169303
Query: 613 aacaaccaaatgccactgctgccctttggcagcatcagtttctctcagctttgccttctt 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137169302 aacaaccaaatgccactgctgccctttggcagcatcagtttctctcagctttgccttctt 137169243
Query: 673 gcttacttttcatatctgtaaagaagaagattacatatcagttttcctttcaagaaaatt 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137169242 gcttacttttcatatctgtaaagaagaagattacatatcagttttcctttcaagaaaatt 137169183
Query: 733 gggatcaaatgtttcaataggagtgtttcatgctctcagaatgatttcagtgatgtgtat 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137169182 gggatcaaatgtttcaataggagtgtttcatgctctcagaatgatttcagtgatgtgtat 137169123
Query: 793 accagtctgtatatagcatcatttacattcaagtttaattgtgcaatttttaacccctat 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137169122 accagtctgtatatagcatcatttacattcaagtttaattgtgcaatttttaacccctat 137169063
Query: 853 tggctgatgcag 864
||||||||||||
Sbjct: 137169062 tggctgatgcag 137169051
Score = 486 bits (245), Expect = e-134
Identities = 245/245 (100%)
Strand = Plus / Minus
Query: 1 gagggaagtgaaggcggcagtctgcgggtgccagccgggttgggcttgctaaggtagagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137178311 gagggaagtgaaggcggcagtctgcgggtgccagccgggttgggcttgctaaggtagagg 137178252
Query: 61 cagcaccgaggggaggccttggccgccggtccggatcgaggatgtcgaagaacacggtgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137178251 cagcaccgaggggaggccttggccgccggtccggatcgaggatgtcgaagaacacggtgt 137178192
Query: 121 cgtcggcccggttccggaaggtagacgtggatgagtacgacgagaacaagttcgtggacg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137178191 cgtcggcccggttccggaaggtagacgtggatgagtacgacgagaacaagttcgtggacg 137178132
Query: 181 aggaagacgggggcgacgggcaggccgggcccgacgagggcgaggtggactcctgcctgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137178131 aggaagacgggggcgacgggcaggccgggcccgacgagggcgaggtggactcctgcctgc 137178072
Query: 241 ggcaa 245
|||||
Sbjct: 137178071 ggcaa 137178067
Score = 357 bits (180), Expect = 1e-95
Identities = 180/180 (100%)
Strand = Plus / Minus
Query: 316 aggatcgagcaggcagcattgtcttgaaggtgctcatctcttttaaagctaacgatattg 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137172669 aggatcgagcaggcagcattgtcttgaaggtgctcatctcttttaaagctaacgatattg 137172610
Query: 376 aaaaagcagttcagtccctggacaagaatggcgtggatctgctaatgaagtatatttata 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137172609 aaaaagcagttcagtccctggacaagaatggcgtggatctgctaatgaagtatatttata 137172550
Query: 436 aaggctttgagagcccctctgacaatagcagtgccatgttactacagtggcacgaaaagg 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137172549 aaggctttgagagcccctctgacaatagcagtgccatgttactacagtggcacgaaaagg 137172490
Score = 147 bits (74), Expect = 2e-32
Identities = 74/74 (100%)
Strand = Plus / Minus
Query: 245 aggaaacatgacagctgccctacaggcagctctgaaaaacccccctatcaataccaagag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137175699 aggaaacatgacagctgccctacaggcagctctgaaaaacccccctatcaataccaagag 137175640
Query: 305 tcaggcggtgaagg 318
||||||||||||||
Sbjct: 137175639 tcaggcggtgaagg 137175626
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 48,315,544
Number of extensions: 324
Number of successful extensions: 324
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 322
Number of HSP's successfully gapped: 6
Length of query: 1606
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1584
Effective length of database: 2,808,408,574
Effective search space: 4448519181216
Effective search space used: 4448519181216
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)