Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012717
(785 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001094622.1| 40S ribosomal protein S9 [Bos taurus]. 350 6e-97
Alignment gi|NP_001073056.1| U3 small nucleolar ribonucleoprotein protein... 62 6e-10
>ref|NP_001094622.1| 40S ribosomal protein S9 [Bos taurus].
Length = 194
Score = 350 bits (899), Expect = 6e-97
Identities = 176/176 (100%), Positives = 176/176 (100%)
Frame = +3
Query: 102 WVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEK 281
WVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEK
Sbjct: 7 WVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEK 66
Query: 282 DPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHA 461
DPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHA
Sbjct: 67 DPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHA 126
Query: 462 RVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQ 629
RVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQ
Sbjct: 127 RVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQ 182
>ref|NP_001073056.1| U3 small nucleolar ribonucleoprotein protein IMP3 [Bos taurus].
Length = 184
Score = 62.0 bits (149), Expect = 6e-10
Identities = 40/124 (32%), Positives = 65/124 (52%), Gaps = 2/124 (1%)
Frame = +3
Query: 165 ELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVL 344
EL+++ Y L+ + + R +R+ AR L L E+DP R+ ALL +L +G++
Sbjct: 30 ELRVLRRYRLQRREDYTRYNQLSRAVRELARRLRDLPERDPFRVRSSAALLDKLYALGLV 89
Query: 345 D-EGKMKL-DYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIP 518
G +L D++ F RRL T + KL +A+ + A + Q H+RV VV P
Sbjct: 90 PTRGSQELCDFVTA---SSFCRRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDP 146
Query: 519 SFIV 530
+F+V
Sbjct: 147 AFLV 150
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 25,786,859
Number of extensions: 764229
Number of successful extensions: 3585
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3569
Number of HSP's successfully gapped: 2
Length of query: 261
Length of database: 17,681,374
Length adjustment: 100
Effective length of query: 161
Effective length of database: 14,372,574
Effective search space: 2313984414
Effective search space used: 2313984414
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Animal-Genome cDNA 20110601C-012717
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012717
(785 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533590.2| PREDICTED: similar to 40S ribosomal protein S9 ... 350 6e-97
Alignment gi|XP_544781.1| PREDICTED: similar to U3 small nucleolar ribonu... 60 3e-09
>ref|XP_533590.2| PREDICTED: similar to 40S ribosomal protein S9 [Canis familiaris].
Length = 194
Score = 350 bits (899), Expect = 6e-97
Identities = 176/176 (100%), Positives = 176/176 (100%)
Frame = +3
Query: 102 WVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEK 281
WVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEK
Sbjct: 7 WVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEK 66
Query: 282 DPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHA 461
DPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHA
Sbjct: 67 DPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHA 126
Query: 462 RVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQ 629
RVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQ
Sbjct: 127 RVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQ 182
>ref|XP_544781.1| PREDICTED: similar to U3 small nucleolar ribonucleoprotein protein
IMP3 (U3 snoRNP protein IMP3) (BRMS2) [Canis
familiaris].
Length = 224
Score = 59.7 bits (143), Expect = 3e-09
Identities = 38/122 (31%), Positives = 62/122 (50%)
Frame = +3
Query: 165 ELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVL 344
EL+++ Y L+ + + R +R+ AR L L E+DP R+ ALL +L +G++
Sbjct: 70 ELRVLRRYRLQRREDYTRYNQLSRAVRELARRLRDLPERDPFRVRASAALLDKLYALGLV 129
Query: 345 DEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSF 524
+ L + F RRL T + KL +A+ + A + Q H+RV VV P+F
Sbjct: 130 PT-RGSLALCDSVTASAFCRRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAF 188
Query: 525 IV 530
+V
Sbjct: 189 LV 190
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 26,739,443
Number of extensions: 741454
Number of successful extensions: 3891
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3871
Number of HSP's successfully gapped: 2
Length of query: 261
Length of database: 18,874,504
Length adjustment: 101
Effective length of query: 160
Effective length of database: 15,507,568
Effective search space: 2481210880
Effective search space used: 2481210880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012717
(785 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003356098.1| PREDICTED: LOW QUALITY PROTEIN: 40S ribosoma... 337 6e-93
Alignment gi|NP_001230221.1| u3 small nucleolar ribonucleoprotein protein... 62 3e-10
>ref|XP_003356098.1| PREDICTED: LOW QUALITY PROTEIN: 40S ribosomal protein S9-like,
partial [Sus scrofa].
Length = 209
Score = 337 bits (863), Expect = 6e-93
Identities = 170/176 (96%), Positives = 170/176 (96%)
Frame = +3
Query: 102 WVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEK 281
WVCRKTYVTPRRPFE ELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEK
Sbjct: 22 WVCRKTYVTPRRPFESLAXRPELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEK 81
Query: 282 DPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHA 461
DPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHA
Sbjct: 82 DPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHA 141
Query: 462 RVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQ 629
RVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQ
Sbjct: 142 RVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQ 197
>ref|NP_001230221.1| u3 small nucleolar ribonucleoprotein protein IMP3 [Sus scrofa].
Length = 184
Score = 62.4 bits (150), Expect = 3e-10
Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 2/124 (1%)
Frame = +3
Query: 165 ELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVL 344
EL+++ Y L+ + + R +R+ AR L L E+DP R+ ALL +L +G++
Sbjct: 30 ELRVLRRYRLQRREDYTRYNQLSRAVRELARRLRDLPERDPFRVRASAALLDKLYALGLV 89
Query: 345 D-EGKMKL-DYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIP 518
G ++L D++ F RRL T + KL +A+ + A + Q H+RV VV P
Sbjct: 90 PTRGSLELCDFVTA---SSFCRRRLPTVLLKLRMAQHLQAAVTFVEQGHVRVGPDVVTDP 146
Query: 519 SFIV 530
+F+V
Sbjct: 147 AFLV 150
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 17,062,298
Number of extensions: 558559
Number of successful extensions: 2455
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2448
Number of HSP's successfully gapped: 2
Length of query: 261
Length of database: 11,343,932
Length adjustment: 97
Effective length of query: 164
Effective length of database: 8,928,923
Effective search space: 1464343372
Effective search space used: 1464343372
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012717
(785 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_084043.1| 40S ribosomal protein S9 [Mus musculus]. 350 5e-97
Alignment gi|NP_598737.1| U3 small nucleolar ribonucleoprotein protein IM... 63 2e-10
>ref|NP_084043.1| 40S ribosomal protein S9 [Mus musculus].
Length = 194
Score = 350 bits (899), Expect = 5e-97
Identities = 176/176 (100%), Positives = 176/176 (100%)
Frame = +3
Query: 102 WVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEK 281
WVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEK
Sbjct: 7 WVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEK 66
Query: 282 DPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHA 461
DPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHA
Sbjct: 67 DPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHA 126
Query: 462 RVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQ 629
RVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQ
Sbjct: 127 RVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQ 182
>ref|NP_598737.1| U3 small nucleolar ribonucleoprotein protein IMP3 [Mus musculus].
Length = 184
Score = 63.2 bits (152), Expect = 2e-10
Identities = 39/122 (31%), Positives = 63/122 (51%)
Frame = +3
Query: 165 ELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVL 344
EL+++ Y L+ + E R +R+ AR L L E+DP R+ ALL +L +G++
Sbjct: 30 ELRVLRRYRLQRREEYTRYNQLSRAVRELARRLRDLPERDPFRVRASAALLDKLYAMGLV 89
Query: 345 DEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSF 524
+ L+ + F RRL T + KL +A+ + A + Q H+RV VV P+F
Sbjct: 90 PT-RGSLELCDSVSASSFCRRRLPTLLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAF 148
Query: 525 IV 530
+V
Sbjct: 149 LV 150
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 21,930,660
Number of extensions: 587776
Number of successful extensions: 2652
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2642
Number of HSP's successfully gapped: 2
Length of query: 261
Length of database: 15,617,559
Length adjustment: 99
Effective length of query: 162
Effective length of database: 12,643,995
Effective search space: 2048327190
Effective search space used: 2048327190
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012717
(785 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001004.2| 40S ribosomal protein S9 [Homo sapiens]. 350 6e-97
Alignment gi|NP_060755.1| U3 small nucleolar ribonucleoprotein protein IM... 59 4e-09
>ref|NP_001004.2| 40S ribosomal protein S9 [Homo sapiens].
Length = 194
Score = 350 bits (899), Expect = 6e-97
Identities = 176/176 (100%), Positives = 176/176 (100%)
Frame = +3
Query: 102 WVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEK 281
WVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEK
Sbjct: 7 WVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEK 66
Query: 282 DPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHA 461
DPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHA
Sbjct: 67 DPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHA 126
Query: 462 RVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQ 629
RVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQ
Sbjct: 127 RVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQ 182
>ref|NP_060755.1| U3 small nucleolar ribonucleoprotein protein IMP3 [Homo sapiens].
Length = 184
Score = 59.3 bits (142), Expect = 4e-09
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 2/124 (1%)
Frame = +3
Query: 165 ELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVL 344
EL+++ Y L+ + + R +R+ AR L L E+D R+ ALL +L +G++
Sbjct: 30 ELRVLRRYRLQRREDYTRYNQLSRAVRELARRLRDLPERDQFRVRASAALLDKLYALGLV 89
Query: 345 D-EGKMKL-DYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIP 518
G ++L D++ F RRL T + KL +A+ + A + Q H+RV VV P
Sbjct: 90 PTRGSLELCDFVTA---SSFCRRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDP 146
Query: 519 SFIV 530
+F+V
Sbjct: 147 AFLV 150
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 26,083,191
Number of extensions: 713964
Number of successful extensions: 3434
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3412
Number of HSP's successfully gapped: 2
Length of query: 261
Length of database: 18,297,164
Length adjustment: 100
Effective length of query: 161
Effective length of database: 15,000,764
Effective search space: 2415123004
Effective search space used: 2415123004
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012717
(785 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 474 e-131
Sscrofa_Chr10 161 7e-37
Sscrofa_Chr17 74 1e-10
>Sscrofa_Chr06
|| Length = 157765593
Score = 474 bits (239), Expect = e-131
Identities = 242/243 (99%)
Strand = Plus / Plus
Query: 488 cagggtccgcaagcaggtggtgaacatcccgtccttcattgtccgcctggactcccagaa 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53298066 cagggtccgcaagcaggtggtgaacatcccgtccttcattgtccgcctggactcccagaa 53298125
Query: 548 gcacatcgacttctccctccgctccccgtatgggggtggccgcccaggccgcgtcaagag 607
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 53298126 gcacatcgacttctccctccgctccccgtatgggggtggccgcccaggccgagtcaagag 53298185
Query: 608 gaagaacgccaagaagggccagggtggggctggcgctggcgatgacgaggaggaggatta 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53298186 gaagaacgccaagaagggccagggtggggctggcgctggcgatgacgaggaggaggatta 53298245
Query: 668 agcccacggctccgggatggtggagtgctttccagtcagataataaaacacggtcaactc 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53298246 agcccacggctccgggatggtggagtgctttccagtcagataataaaacacggtcaactc 53298305
Query: 728 tgt 730
|||
Sbjct: 53298306 tgt 53298308
Score = 377 bits (190), Expect = e-102
Identities = 190/190 (100%)
Strand = Plus / Plus
Query: 302 agggaatgctctgctgcggcgactcgtccgcatcggggtgctggacgagggcaaaatgaa 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53296655 agggaatgctctgctgcggcgactcgtccgcatcggggtgctggacgagggcaaaatgaa 53296714
Query: 362 gctggattacatcctgggcctgaagatcgaggatttcttggagagacgcctgcagaccca 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53296715 gctggattacatcctgggcctgaagatcgaggatttcttggagagacgcctgcagaccca 53296774
Query: 422 ggtcttcaagctgggcttggccaagtccatccaccacgcccgagtgctaatccgccagcg 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53296775 ggtcttcaagctgggcttggccaagtccatccaccacgcccgagtgctaatccgccagcg 53296834
Query: 482 ccatatcagg 491
||||||||||
Sbjct: 53296835 ccatatcagg 53296844
Score = 248 bits (125), Expect = 4e-63
Identities = 125/125 (100%)
Strand = Plus / Plus
Query: 180 ggcgaatatgggctccggaacaaacgtgaggtctggagggtcaaatttactctggccaag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53292624 ggcgaatatgggctccggaacaaacgtgaggtctggagggtcaaatttactctggccaag 53292683
Query: 240 atccgcaaggctgcccgggaactcctgacgctggatgagaaagacccgcggcgtcttttt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53292684 atccgcaaggctgcccgggaactcctgacgctggatgagaaagacccgcggcgtcttttt 53292743
Query: 300 gaagg 304
|||||
Sbjct: 53292744 gaagg 53292748
Score = 202 bits (102), Expect = 2e-49
Identities = 123/126 (97%), Gaps = 3/126 (2%)
Strand = Plus / Plus
Query: 56 caggcgcagacgggcgagcagcgccagcatgccggttgctcggagttgggtttgtcgcaa 115
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 53292303 caggcgcagacgggcgagcagcgccagcatgccggt-gctcggagttgggtttgtcgcaa 53292361
Query: 116 gacttatgtgacccctcggagacccttcgagaagtctcgcctcgaccaagagctgaagct 175
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 53292362 gacttatgtgacccctcggagacccttcgag-agtctcgcctcgacc-agagctgaagct 53292419
Query: 176 gatcgg 181
||||||
Sbjct: 53292420 gatcgg 53292425
Score = 115 bits (58), Expect = 4e-23
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 2 ctctttttccgtccgggagtctgtgggtgaggcgtgctggggtgctctttagtccagg 59
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53292025 ctctttttccgtccgggagtctgtgggtgaggcgtgctggggtgctctttagtccagg 53292082
>Sscrofa_Chr10
|| Length = 79102373
Score = 161 bits (81), Expect = 7e-37
Identities = 145/164 (88%), Gaps = 8/164 (4%)
Strand = Plus / Minus
Query: 496 gcaagcaggtggtgaacatcccgtccttcattgtccgcctggactcccagaagcacatcg 555
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 61428422 gcaagcaggtggtgaacatcccgtccttcattgtccgcctggactcccagcagcacctc- 61428364
Query: 556 acttctccctccgctccccgt-atgggggtggccgcccaggccgcgtcaagaggaagaac 614
|||||| |||| | | | ||||||||||||||||||||||| |||||||||||
Sbjct: 61428363 -----tccctctgctctctgggaggggggtggccgcccaggccgcgtgaagaggaagaag 61428309
Query: 615 gccaagaagggccagggtggggctggcgctggcgatgacgagga 658
|||||||||||||||||||||||||| || |||||||||||||
Sbjct: 61428308 gccaagaagggccagggtggggctggagc-cgcgatgacgagga 61428266
>Sscrofa_Chr17
|| Length = 69701581
Score = 73.8 bits (37), Expect = 1e-10
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 160 accaagagctgaagctgatcggcgaatatgggctccggaacaaacgtgaggtctggaggg 219
|||| ||| ||||||| ||| | |||| ||| ||| |||||||| |||||||||||||||
Sbjct: 43476225 accatgagatgaagctaatcagagaatgtggactctggaacaaatgtgaggtctggaggg 43476284
Query: 220 tcaaatttactctggccaaga 240
|||| ||| ||||||||||||
Sbjct: 43476285 tcaacttttctctggccaaga 43476305
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 16,389,112
Number of extensions: 310
Number of successful extensions: 310
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 308
Number of HSP's successfully gapped: 8
Length of query: 785
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 764
Effective length of database: 2,808,413,156
Effective search space: 2145627651184
Effective search space used: 2145627651184
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)