Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012718
(723 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533590.2| PREDICTED: similar to 40S ribosomal protein S9 ... 362 e-100
Alignment gi|XP_544781.1| PREDICTED: similar to U3 small nucleolar ribonu... 60 3e-09
>ref|XP_533590.2| PREDICTED: similar to 40S ribosomal protein S9 [Canis familiaris].
Length = 194
Score = 362 bits (928), Expect = e-100
Identities = 182/182 (100%), Positives = 182/182 (100%)
Frame = +1
Query: 55 MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAREL 234
MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAREL
Sbjct: 1 MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAREL 60
Query: 235 LTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLA 414
LTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLA
Sbjct: 61 LTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLA 120
Query: 415 KSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKK 594
KSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKK
Sbjct: 121 KSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKK 180
Query: 595 GQ 600
GQ
Sbjct: 181 GQ 182
>ref|XP_544781.1| PREDICTED: similar to U3 small nucleolar ribonucleoprotein protein
IMP3 (U3 snoRNP protein IMP3) (BRMS2) [Canis
familiaris].
Length = 224
Score = 59.7 bits (143), Expect = 3e-09
Identities = 38/122 (31%), Positives = 62/122 (50%)
Frame = +1
Query: 136 ELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVL 315
EL+++ Y L+ + + R +R+ AR L L E+DP R+ ALL +L +G++
Sbjct: 70 ELRVLRRYRLQRREDYTRYNQLSRAVRELARRLRDLPERDPFRVRASAALLDKLYALGLV 129
Query: 316 DEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSF 495
+ L + F RRL T + KL +A+ + A + Q H+RV VV P+F
Sbjct: 130 PT-RGSLALCDSVTASAFCRRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAF 188
Query: 496 IV 501
+V
Sbjct: 189 LV 190
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 26,081,875
Number of extensions: 732882
Number of successful extensions: 3527
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3510
Number of HSP's successfully gapped: 2
Length of query: 241
Length of database: 18,874,504
Length adjustment: 100
Effective length of query: 141
Effective length of database: 15,540,904
Effective search space: 2191267464
Effective search space used: 2191267464
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Animal-Genome cDNA 20110601C-012718
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012718
(723 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001094622.1| 40S ribosomal protein S9 [Bos taurus]. 362 e-100
Alignment gi|NP_001073056.1| U3 small nucleolar ribonucleoprotein protein... 62 5e-10
>ref|NP_001094622.1| 40S ribosomal protein S9 [Bos taurus].
Length = 194
Score = 362 bits (928), Expect = e-100
Identities = 182/182 (100%), Positives = 182/182 (100%)
Frame = +1
Query: 55 MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAREL 234
MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAREL
Sbjct: 1 MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAREL 60
Query: 235 LTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLA 414
LTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLA
Sbjct: 61 LTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLA 120
Query: 415 KSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKK 594
KSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKK
Sbjct: 121 KSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKK 180
Query: 595 GQ 600
GQ
Sbjct: 181 GQ 182
>ref|NP_001073056.1| U3 small nucleolar ribonucleoprotein protein IMP3 [Bos taurus].
Length = 184
Score = 62.0 bits (149), Expect = 5e-10
Identities = 40/124 (32%), Positives = 65/124 (52%), Gaps = 2/124 (1%)
Frame = +1
Query: 136 ELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVL 315
EL+++ Y L+ + + R +R+ AR L L E+DP R+ ALL +L +G++
Sbjct: 30 ELRVLRRYRLQRREDYTRYNQLSRAVRELARRLRDLPERDPFRVRSSAALLDKLYALGLV 89
Query: 316 D-EGKMKL-DYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIP 489
G +L D++ F RRL T + KL +A+ + A + Q H+RV VV P
Sbjct: 90 PTRGSQELCDFVTA---SSFCRRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDP 146
Query: 490 SFIV 501
+F+V
Sbjct: 147 AFLV 150
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 25,013,699
Number of extensions: 723092
Number of successful extensions: 3277
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3263
Number of HSP's successfully gapped: 2
Length of query: 241
Length of database: 17,681,374
Length adjustment: 99
Effective length of query: 142
Effective length of database: 14,405,662
Effective search space: 2045604004
Effective search space used: 2045604004
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012718
(723 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003356098.1| PREDICTED: LOW QUALITY PROTEIN: 40S ribosoma... 342 2e-94
Alignment gi|NP_001230221.1| u3 small nucleolar ribonucleoprotein protein... 62 2e-10
>ref|XP_003356098.1| PREDICTED: LOW QUALITY PROTEIN: 40S ribosomal protein S9-like,
partial [Sus scrofa].
Length = 209
Score = 342 bits (876), Expect = 2e-94
Identities = 173/179 (96%), Positives = 173/179 (96%)
Frame = +1
Query: 64 ARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTL 243
ARSWVCRKTYVTPRRPFE ELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTL
Sbjct: 19 ARSWVCRKTYVTPRRPFESLAXRPELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTL 78
Query: 244 DEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSI 423
DEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSI
Sbjct: 79 DEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSI 138
Query: 424 HHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQ 600
HHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQ
Sbjct: 139 HHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQ 197
>ref|NP_001230221.1| u3 small nucleolar ribonucleoprotein protein IMP3 [Sus scrofa].
Length = 184
Score = 62.4 bits (150), Expect = 2e-10
Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 2/124 (1%)
Frame = +1
Query: 136 ELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVL 315
EL+++ Y L+ + + R +R+ AR L L E+DP R+ ALL +L +G++
Sbjct: 30 ELRVLRRYRLQRREDYTRYNQLSRAVRELARRLRDLPERDPFRVRASAALLDKLYALGLV 89
Query: 316 D-EGKMKL-DYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIP 489
G ++L D++ F RRL T + KL +A+ + A + Q H+RV VV P
Sbjct: 90 PTRGSLELCDFVTA---SSFCRRRLPTVLLKLRMAQHLQAAVTFVEQGHVRVGPDVVTDP 146
Query: 490 SFIV 501
+F+V
Sbjct: 147 AFLV 150
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 16,264,447
Number of extensions: 482932
Number of successful extensions: 2242
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2237
Number of HSP's successfully gapped: 2
Length of query: 241
Length of database: 11,343,932
Length adjustment: 96
Effective length of query: 145
Effective length of database: 8,953,820
Effective search space: 1298303900
Effective search space used: 1298303900
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012718
(723 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_084043.1| 40S ribosomal protein S9 [Mus musculus]. 362 e-100
Alignment gi|NP_598737.1| U3 small nucleolar ribonucleoprotein protein IM... 63 2e-10
>ref|NP_084043.1| 40S ribosomal protein S9 [Mus musculus].
Length = 194
Score = 362 bits (928), Expect = e-100
Identities = 182/182 (100%), Positives = 182/182 (100%)
Frame = +1
Query: 55 MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAREL 234
MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAREL
Sbjct: 1 MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAREL 60
Query: 235 LTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLA 414
LTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLA
Sbjct: 61 LTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLA 120
Query: 415 KSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKK 594
KSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKK
Sbjct: 121 KSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKK 180
Query: 595 GQ 600
GQ
Sbjct: 181 GQ 182
>ref|NP_598737.1| U3 small nucleolar ribonucleoprotein protein IMP3 [Mus musculus].
Length = 184
Score = 63.2 bits (152), Expect = 2e-10
Identities = 39/122 (31%), Positives = 63/122 (51%)
Frame = +1
Query: 136 ELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVL 315
EL+++ Y L+ + E R +R+ AR L L E+DP R+ ALL +L +G++
Sbjct: 30 ELRVLRRYRLQRREEYTRYNQLSRAVRELARRLRDLPERDPFRVRASAALLDKLYAMGLV 89
Query: 316 DEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSF 495
+ L+ + F RRL T + KL +A+ + A + Q H+RV VV P+F
Sbjct: 90 PT-RGSLELCDSVSASSFCRRRLPTLLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAF 148
Query: 496 IV 501
+V
Sbjct: 149 LV 150
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 21,421,316
Number of extensions: 582757
Number of successful extensions: 2437
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2428
Number of HSP's successfully gapped: 2
Length of query: 241
Length of database: 15,617,559
Length adjustment: 98
Effective length of query: 143
Effective length of database: 12,674,031
Effective search space: 1812386433
Effective search space used: 1812386433
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012718
(723 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001004.2| 40S ribosomal protein S9 [Homo sapiens]. 362 e-100
Alignment gi|NP_060755.1| U3 small nucleolar ribonucleoprotein protein IM... 59 3e-09
>ref|NP_001004.2| 40S ribosomal protein S9 [Homo sapiens].
Length = 194
Score = 362 bits (928), Expect = e-100
Identities = 182/182 (100%), Positives = 182/182 (100%)
Frame = +1
Query: 55 MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAREL 234
MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAREL
Sbjct: 1 MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAREL 60
Query: 235 LTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLA 414
LTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLA
Sbjct: 61 LTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLA 120
Query: 415 KSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKK 594
KSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKK
Sbjct: 121 KSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKK 180
Query: 595 GQ 600
GQ
Sbjct: 181 GQ 182
>ref|NP_060755.1| U3 small nucleolar ribonucleoprotein protein IMP3 [Homo sapiens].
Length = 184
Score = 59.3 bits (142), Expect = 3e-09
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 2/124 (1%)
Frame = +1
Query: 136 ELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVL 315
EL+++ Y L+ + + R +R+ AR L L E+D R+ ALL +L +G++
Sbjct: 30 ELRVLRRYRLQRREDYTRYNQLSRAVRELARRLRDLPERDQFRVRASAALLDKLYALGLV 89
Query: 316 D-EGKMKL-DYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIP 489
G ++L D++ F RRL T + KL +A+ + A + Q H+RV VV P
Sbjct: 90 PTRGSLELCDFVTA---SSFCRRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDP 146
Query: 490 SFIV 501
+F+V
Sbjct: 147 AFLV 150
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 25,454,847
Number of extensions: 708116
Number of successful extensions: 3172
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3152
Number of HSP's successfully gapped: 2
Length of query: 241
Length of database: 18,297,164
Length adjustment: 100
Effective length of query: 141
Effective length of database: 15,000,764
Effective search space: 2115107724
Effective search space used: 2115107724
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012718
(723 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 474 e-131
Sscrofa_Chr10 161 6e-37
Sscrofa_Chr17 74 1e-10
>Sscrofa_Chr06
|| Length = 157765593
Score = 474 bits (239), Expect = e-131
Identities = 242/243 (99%)
Strand = Plus / Plus
Query: 459 cagggtccgcaagcaggtggtgaacatcccgtccttcattgtccgcctggactcccagaa 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53298066 cagggtccgcaagcaggtggtgaacatcccgtccttcattgtccgcctggactcccagaa 53298125
Query: 519 gcacatcgacttctccctccgctccccgtatgggggtggccgcccaggccgcgtcaagag 578
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 53298126 gcacatcgacttctccctccgctccccgtatgggggtggccgcccaggccgagtcaagag 53298185
Query: 579 gaagaacgccaagaagggccagggtggggctggcgctggcgatgacgaggaggaggatta 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53298186 gaagaacgccaagaagggccagggtggggctggcgctggcgatgacgaggaggaggatta 53298245
Query: 639 agcccacggctccgggatggtggagtgctttccagtcagataataaaacacggtcaactc 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53298246 agcccacggctccgggatggtggagtgctttccagtcagataataaaacacggtcaactc 53298305
Query: 699 tgt 701
|||
Sbjct: 53298306 tgt 53298308
Score = 377 bits (190), Expect = e-102
Identities = 190/190 (100%)
Strand = Plus / Plus
Query: 273 agggaatgctctgctgcggcgactcgtccgcatcggggtgctggacgagggcaaaatgaa 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53296655 agggaatgctctgctgcggcgactcgtccgcatcggggtgctggacgagggcaaaatgaa 53296714
Query: 333 gctggattacatcctgggcctgaagatcgaggatttcttggagagacgcctgcagaccca 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53296715 gctggattacatcctgggcctgaagatcgaggatttcttggagagacgcctgcagaccca 53296774
Query: 393 ggtcttcaagctgggcttggccaagtccatccaccacgcccgagtgctaatccgccagcg 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53296775 ggtcttcaagctgggcttggccaagtccatccaccacgcccgagtgctaatccgccagcg 53296834
Query: 453 ccatatcagg 462
||||||||||
Sbjct: 53296835 ccatatcagg 53296844
Score = 248 bits (125), Expect = 4e-63
Identities = 125/125 (100%)
Strand = Plus / Plus
Query: 151 ggcgaatatgggctccggaacaaacgtgaggtctggagggtcaaatttactctggccaag 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53292624 ggcgaatatgggctccggaacaaacgtgaggtctggagggtcaaatttactctggccaag 53292683
Query: 211 atccgcaaggctgcccgggaactcctgacgctggatgagaaagacccgcggcgtcttttt 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53292684 atccgcaaggctgcccgggaactcctgacgctggatgagaaagacccgcggcgtcttttt 53292743
Query: 271 gaagg 275
|||||
Sbjct: 53292744 gaagg 53292748
Score = 198 bits (100), Expect = 3e-48
Identities = 121/124 (97%), Gaps = 3/124 (2%)
Strand = Plus / Plus
Query: 29 ggcgcagacgggcgagcagcgccagcatgccggttgctcggagttgggtttgtcgcaaga 88
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 53292305 ggcgcagacgggcgagcagcgccagcatgccggt-gctcggagttgggtttgtcgcaaga 53292363
Query: 89 cttatgtgacccctcggagacccttcgagaagtctcgcctcgaccaagagctgaagctga 148
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 53292364 cttatgtgacccctcggagacccttcgag-agtctcgcctcgacc-agagctgaagctga 53292421
Query: 149 tcgg 152
||||
Sbjct: 53292422 tcgg 53292425
>Sscrofa_Chr10
|| Length = 79102373
Score = 161 bits (81), Expect = 6e-37
Identities = 145/164 (88%), Gaps = 8/164 (4%)
Strand = Plus / Minus
Query: 467 gcaagcaggtggtgaacatcccgtccttcattgtccgcctggactcccagaagcacatcg 526
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 61428422 gcaagcaggtggtgaacatcccgtccttcattgtccgcctggactcccagcagcacctc- 61428364
Query: 527 acttctccctccgctccccgt-atgggggtggccgcccaggccgcgtcaagaggaagaac 585
|||||| |||| | | | ||||||||||||||||||||||| |||||||||||
Sbjct: 61428363 -----tccctctgctctctgggaggggggtggccgcccaggccgcgtgaagaggaagaag 61428309
Query: 586 gccaagaagggccagggtggggctggcgctggcgatgacgagga 629
|||||||||||||||||||||||||| || |||||||||||||
Sbjct: 61428308 gccaagaagggccagggtggggctggagc-cgcgatgacgagga 61428266
>Sscrofa_Chr17
|| Length = 69701581
Score = 73.8 bits (37), Expect = 1e-10
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 131 accaagagctgaagctgatcggcgaatatgggctccggaacaaacgtgaggtctggaggg 190
|||| ||| ||||||| ||| | |||| ||| ||| |||||||| |||||||||||||||
Sbjct: 43476225 accatgagatgaagctaatcagagaatgtggactctggaacaaatgtgaggtctggaggg 43476284
Query: 191 tcaaatttactctggccaaga 211
|||| ||| ||||||||||||
Sbjct: 43476285 tcaacttttctctggccaaga 43476305
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 15,714,295
Number of extensions: 294
Number of successful extensions: 294
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 292
Number of HSP's successfully gapped: 7
Length of query: 723
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 702
Effective length of database: 2,808,413,156
Effective search space: 1971506035512
Effective search space used: 1971506035512
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)