Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012722
(1068 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002691732.1| PREDICTED: TLR4 interactor with leucine rich... 285 4e-77
Alignment gi|XP_002694193.1| PREDICTED: Lrrc38 protein-like [Bos taurus]. 72 8e-13
Alignment gi|XP_001256030.2| PREDICTED: Lrrc38 protein-like [Bos taurus]. 72 8e-13
Alignment gi|XP_002686083.1| PREDICTED: leucine rich repeat and Ig domain... 70 2e-12
Alignment gi|XP_002684114.1| PREDICTED: leucine rich repeat and Ig domain... 70 2e-12
Alignment gi|XP_002687957.1| PREDICTED: expressed sequence AI841794-like ... 70 4e-12
Alignment gi|XP_002704523.1| PREDICTED: expressed sequence AI841794-like ... 70 4e-12
Alignment gi|XP_001787660.2| PREDICTED: G protein-coupled receptor 124 [B... 69 5e-12
Alignment gi|XP_002689001.1| PREDICTED: leucine rich repeat and Ig domain... 68 1e-11
Alignment gi|XP_875847.1| PREDICTED: leucine rich repeat and Ig domain co... 68 1e-11
>ref|XP_002691732.1| PREDICTED: TLR4 interactor with leucine rich repeats-like [Bos
taurus].
Length = 328
Score = 285 bits (730), Expect = 4e-77
Identities = 155/266 (58%), Positives = 163/266 (61%)
Frame = +1
Query: 163 VWTQXXXXXXXXXXXXXXDCPEACVCAPGGQANCSGRALPAVPGGLRMSVRILLLDHNRV 342
VWTQ DCPEACVCAPGGQANCS RALPAVPGGL VR+LLL+HNRV
Sbjct: 26 VWTQAPAAAASWGTPGALDCPEACVCAPGGQANCSERALPAVPGGLNRRVRVLLLNHNRV 85
Query: 343 RALPPGAFVGAGALLRLDLHENGLRWVHAWAFWGLGALQQLDLSANQLEVLVPGTFVPLR 522
ALPPGAFV AGALLRLDL ENGLRWVHA AFWGLGAL+QLDLSANQLE L+PGTF PLR
Sbjct: 86 HALPPGAFVDAGALLRLDLRENGLRWVHARAFWGLGALEQLDLSANQLEALLPGTFAPLR 145
Query: 523 ALRDLSLAGNXXXXXXXXXXXXXXXXXXXXXXDNEXXXXXXXXXXXXXXXDTXXXXXXXX 702
ALR LSLA N DN+ +T
Sbjct: 146 ALRALSLAENRLARLEPAVLGALPLLRALSLQDNDLPALASGLLAGLPALNTLRLRGNPW 205
Query: 703 XXXXXXXXXXXXXXXXXXXXXEAETLLCVSPGRLTFSPLAALPDAAFSRCAQPLALRDLA 882
EAETLLCVSPGRLT SPL A PDAAFS CA+PLA RDLA
Sbjct: 206 TCGCALRPLCAWLRGHPRHAPEAETLLCVSPGRLTLSPLTAFPDAAFSHCARPLAARDLA 265
Query: 883 VVYALGPASFLASLATCLGLGSLLTA 960
V+Y LGP SFLASLA CL LGS TA
Sbjct: 266 VIYGLGPVSFLASLAACLALGSAFTA 291
>ref|XP_002694193.1| PREDICTED: Lrrc38 protein-like [Bos taurus].
Length = 299
Score = 72.0 bits (175), Expect = 8e-13
Identities = 43/111 (38%), Positives = 53/111 (47%)
Frame = +1
Query: 220 CPEACVCAPGGQANCSGRALPAVPGGLRMSVRILLLDHNRVRALPPGAFVGAGALLRLDL 399
CP C C +C R LP+VP + VR LL+ NR++ +P F+ G L+ LD
Sbjct: 33 CPAGCACTDPHTVDCRDRGLPSVPDPFPLDVRKLLVAGNRIQHIPEDFFIFYGDLVYLDF 92
Query: 400 HENGLRWVHAWAFWGLGALQQLDLSANQLEVLVPGTFVPLRALRDLSLAGN 552
N LR + F G L LDLS N L L G F L LSLA N
Sbjct: 93 RNNSLRSLEEGTFSGSAKLAFLDLSYNNLTQLGAGAFRSAGRLVKLSLANN 143
>ref|XP_001256030.2| PREDICTED: Lrrc38 protein-like [Bos taurus].
Length = 299
Score = 72.0 bits (175), Expect = 8e-13
Identities = 43/111 (38%), Positives = 53/111 (47%)
Frame = +1
Query: 220 CPEACVCAPGGQANCSGRALPAVPGGLRMSVRILLLDHNRVRALPPGAFVGAGALLRLDL 399
CP C C +C R LP+VP + VR LL+ NR++ +P F+ G L+ LD
Sbjct: 33 CPAGCACTDPHTVDCRDRGLPSVPDPFPLDVRKLLVAGNRIQHIPEDFFIFYGDLVYLDF 92
Query: 400 HENGLRWVHAWAFWGLGALQQLDLSANQLEVLVPGTFVPLRALRDLSLAGN 552
N LR + F G L LDLS N L L G F L LSLA N
Sbjct: 93 RNNSLRSLEEGTFSGSAKLAFLDLSYNNLTQLGAGAFRSAGRLVKLSLANN 143
>ref|XP_002686083.1| PREDICTED: leucine rich repeat and Ig domain containing 4 [Bos
taurus].
Length = 594
Score = 70.5 bits (171), Expect = 2e-12
Identities = 46/113 (40%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Frame = +1
Query: 217 DCPEACVCAPGGQAN-CSGRALPAVPGGLRMSVRILLLDHNRVRALPPGAFVGAGALLRL 393
+CP C C QA C+ R L AVPGGL + +L L NR+ L G G L L
Sbjct: 31 NCPAVCDCTSQPQAVLCAHRRLEAVPGGLPLDTELLDLSGNRLWGLQQGMLSRLGQLREL 90
Query: 394 DLHENGLRWVHAWAFWGLGALQQLDLSANQLEVLVPGTFVPLRALRDLSLAGN 552
DL N L + AF GL +L L L N+L ++ PG F L AL L L N
Sbjct: 91 DLSYNQLSTLEPGAFHGLRSLLTLRLQGNRLRIMGPGVFAGLSALTLLDLRLN 143
>ref|XP_002684114.1| PREDICTED: leucine rich repeat and Ig domain containing 4 [Bos
taurus].
Length = 594
Score = 70.5 bits (171), Expect = 2e-12
Identities = 46/113 (40%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Frame = +1
Query: 217 DCPEACVCAPGGQAN-CSGRALPAVPGGLRMSVRILLLDHNRVRALPPGAFVGAGALLRL 393
+CP C C QA C+ R L AVPGGL + +L L NR+ L G G L L
Sbjct: 31 NCPAVCDCTSQPQAVLCAHRRLEAVPGGLPLDTELLDLSGNRLWGLQQGMLSRLGQLREL 90
Query: 394 DLHENGLRWVHAWAFWGLGALQQLDLSANQLEVLVPGTFVPLRALRDLSLAGN 552
DL N L + AF GL +L L L N+L ++ PG F L AL L L N
Sbjct: 91 DLSYNQLSTLEPGAFHGLRSLLTLRLQGNRLRIMGPGVFAGLSALTLLDLRLN 143
>ref|XP_002687957.1| PREDICTED: expressed sequence AI841794-like [Bos taurus].
Length = 374
Score = 69.7 bits (169), Expect = 4e-12
Identities = 47/112 (41%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Frame = +1
Query: 220 CPEACVCAPGG-QANCSGRALPAVPGGLRMSVRILLLDHNRVRALPPGAFVGAGALLRLD 396
CP C C G Q +CSG L A P L + R LLL +NR+ +LP GAF L RLD
Sbjct: 43 CPFPCTCDGRGLQVDCSGLGLTAPPPDLPAATRSLLLLNNRLSSLPGGAFANLSGLQRLD 102
Query: 397 LHENGLRWVHAWAFWGLGALQQLDLSANQLEVLVPGTFVPLRALRDLSLAGN 552
L N L + AF L L +L L N L L PL LR L L+ N
Sbjct: 103 LSNNFLDRLPRMAFGDLANLTELQLRNNSLRALDATLLRPLPRLRHLDLSLN 154
>ref|XP_002704523.1| PREDICTED: expressed sequence AI841794-like [Bos taurus].
Length = 374
Score = 69.7 bits (169), Expect = 4e-12
Identities = 47/112 (41%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Frame = +1
Query: 220 CPEACVCAPGG-QANCSGRALPAVPGGLRMSVRILLLDHNRVRALPPGAFVGAGALLRLD 396
CP C C G Q +CSG L A P L + R LLL +NR+ +LP GAF L RLD
Sbjct: 43 CPFPCTCDGRGLQVDCSGLGLTAPPPDLPAATRSLLLLNNRLSSLPGGAFANLSGLQRLD 102
Query: 397 LHENGLRWVHAWAFWGLGALQQLDLSANQLEVLVPGTFVPLRALRDLSLAGN 552
L N L + AF L L +L L N L L PL LR L L+ N
Sbjct: 103 LSNNFLDRLPRMAFGDLANLTELQLRNNSLRALDATLLRPLPRLRHLDLSLN 154
>ref|XP_001787660.2| PREDICTED: G protein-coupled receptor 124 [Bos taurus].
Length = 1052
Score = 69.3 bits (168), Expect = 5e-12
Identities = 43/99 (43%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Frame = +1
Query: 262 CSGRALPAVP--GGLRMSVRILLLDHNRVRALPPGAFVGAGALLRLDLHENGLRWVHAWA 435
C G LP P G L S LLL +N++ L GAF+G L +LDL N + V A
Sbjct: 68 CGGGDLPEPPDPGLLPNSTVTLLLSNNKITGLRSGAFLGLSLLEKLDLRNNVISTVQPGA 127
Query: 436 FWGLGALQQLDLSANQLEVLVPGTFVPLRALRDLSLAGN 552
F GLG L++LDLS N++ L GTF L L L+++GN
Sbjct: 128 FLGLGELKRLDLSNNRIGCLTSGTFQGLPRLLRLNISGN 166
Score = 49.7 bits (117), Expect = 4e-06
Identities = 28/69 (40%), Positives = 39/69 (56%)
Frame = +1
Query: 325 LDHNRVRALPPGAFVGAGALLRLDLHENGLRWVHAWAFWGLGALQQLDLSANQLEVLVPG 504
L +N + + PGAF+G G L RLDL N + + + F GL L +L++S N L PG
Sbjct: 115 LRNNVISTVQPGAFLGLGELKRLDLSNNRIGCLTSGTFQGLPRLLRLNISGNIFSSLQPG 174
Query: 505 TFVPLRALR 531
F L AL+
Sbjct: 175 VFDELPALK 183
>ref|XP_002689001.1| PREDICTED: leucine rich repeat and Ig domain containing 3-like [Bos
taurus].
Length = 592
Score = 68.2 bits (165), Expect = 1e-11
Identities = 44/112 (39%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Frame = +1
Query: 220 CPEACVCAPGGQA-NCSGRALPAVPGGLRMSVRILLLDHNRVRALPPGAFVGAGALLRLD 396
CP C C +A C R L AVP G+ R+L L NR+R L PG L LD
Sbjct: 25 CPARCECTAQTRAVACPRRRLTAVPDGIPAETRLLELSRNRIRCLNPGDLAALPLLEELD 84
Query: 397 LHENGLRWVHAWAFWGLGALQQLDLSANQLEVLVPGTFVPLRALRDLSLAGN 552
L EN + V AF L L+ L L N L+++ PG F L L L L+ N
Sbjct: 85 LSENVIAHVEPGAFANLPRLRVLRLRGNLLKLIPPGVFTRLDNLTLLDLSEN 136
>ref|XP_875847.1| PREDICTED: leucine rich repeat and Ig domain containing 3 [Bos
taurus].
Length = 592
Score = 68.2 bits (165), Expect = 1e-11
Identities = 44/112 (39%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Frame = +1
Query: 220 CPEACVCAPGGQA-NCSGRALPAVPGGLRMSVRILLLDHNRVRALPPGAFVGAGALLRLD 396
CP C C +A C R L AVP G+ R+L L NR+R L PG L LD
Sbjct: 25 CPARCECTAQTRAVACPRRRLTAVPDGIPAETRLLELSRNRIRCLNPGDLAALPLLEELD 84
Query: 397 LHENGLRWVHAWAFWGLGALQQLDLSANQLEVLVPGTFVPLRALRDLSLAGN 552
L EN + V AF L L+ L L N L+++ PG F L L L L+ N
Sbjct: 85 LSENVIAHVEPGAFANLPRLRVLRLRGNLLKLIPPGVFTRLDNLTLLDLSEN 136
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 29,694,427
Number of extensions: 852880
Number of successful extensions: 5065
Number of sequences better than 1.0e-05: 73
Number of HSP's gapped: 4635
Number of HSP's successfully gapped: 115
Length of query: 356
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 253
Effective length of database: 14,273,310
Effective search space: 3611147430
Effective search space used: 3611147430
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012722
(1068 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848545.1| PREDICTED: similar to CG11136-PA [Canis familia... 276 2e-74
Alignment gi|XP_854999.1| PREDICTED: similar to leucine rich repeat neuro... 68 1e-11
Alignment gi|XP_852381.1| PREDICTED: similar to CG12199-PA, isoform A [Ca... 67 2e-11
Alignment gi|XP_545164.2| PREDICTED: similar to leucine rich repeat conta... 66 6e-11
Alignment gi|XP_543540.2| PREDICTED: similar to reticulon 4 receptor prec... 65 1e-10
Alignment gi|XP_540322.2| PREDICTED: similar to leucine rich repeat neuro... 65 1e-10
Alignment gi|XP_539968.2| PREDICTED: similar to G protein-coupled recepto... 64 3e-10
Alignment gi|XP_539495.2| PREDICTED: similar to Carboxypeptidase N subuni... 64 3e-10
Alignment gi|XP_534308.2| PREDICTED: similar to immunoglobulin superfamil... 63 5e-10
Alignment gi|XP_851831.1| PREDICTED: similar to Leucine-rich repeat-conta... 63 5e-10
>ref|XP_848545.1| PREDICTED: similar to CG11136-PA [Canis familiaris].
Length = 303
Score = 276 bits (706), Expect = 2e-74
Identities = 153/266 (57%), Positives = 156/266 (58%)
Frame = +1
Query: 163 VWTQXXXXXXXXXXXXXXDCPEACVCAPGGQANCSGRALPAVPGGLRMSVRILLLDHNRV 342
VW+Q CPEAC CAPGGQANCSGRALPAVP GL +R LLLDHNRV
Sbjct: 11 VWSQWSATATSSGTPGLPHCPEACACAPGGQANCSGRALPAVPAGLSRGLRALLLDHNRV 70
Query: 343 RALPPGAFVGAGALLRLDLHENGLRWVHAWAFWGLGALQQLDLSANQLEVLVPGTFVPLR 522
RALPPGAF GA LLRLDL ENGLRWVHA AFW LGALQQLDLSANQLE L PGTF PL
Sbjct: 71 RALPPGAFAGADTLLRLDLRENGLRWVHARAFWSLGALQQLDLSANQLEALAPGTFSPLS 130
Query: 523 ALRDLSLAGNXXXXXXXXXXXXXXXXXXXXXXDNEXXXXXXXXXXXXXXXDTXXXXXXXX 702
ALR LSLAGN DNE
Sbjct: 131 ALRSLSLAGNRLARLESAALGVLPLLNALDLRDNELAALAPGLLAGLPALHALHLRGNPW 190
Query: 703 XXXXXXXXXXXXXXXXXXXXXEAETLLCVSPGRLTFSPLAALPDAAFSRCAQPLALRDLA 882
EAETLLCV PGRLT SPL A DAAFS CAQPLA RDLA
Sbjct: 191 ACGCALRPLCSWLRRHPRPAPEAETLLCVLPGRLTLSPLTAFSDAAFSHCAQPLAPRDLA 250
Query: 883 VVYALGPASFLASLATCLGLGSLLTA 960
VVYALGP SFLASLA CL LGS+LTA
Sbjct: 251 VVYALGPVSFLASLAACLALGSMLTA 276
>ref|XP_854999.1| PREDICTED: similar to leucine rich repeat neuronal 6C [Canis
familiaris].
Length = 592
Score = 68.2 bits (165), Expect = 1e-11
Identities = 44/112 (39%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Frame = +1
Query: 220 CPEACVCAPGGQA-NCSGRALPAVPGGLRMSVRILLLDHNRVRALPPGAFVGAGALLRLD 396
CP C C +A C R L AVP G+ R+L L NR+R L PG L LD
Sbjct: 25 CPARCECTAQTRAVACPRRRLTAVPDGIPAETRLLELSRNRIRCLNPGDLAALPLLEELD 84
Query: 397 LHENGLRWVHAWAFWGLGALQQLDLSANQLEVLVPGTFVPLRALRDLSLAGN 552
L EN + V AF L L+ L L N L+++ PG F L L L L+ N
Sbjct: 85 LSENVIAHVEPGAFANLPRLRVLRLRGNLLKLIPPGVFTRLDNLTLLDLSEN 136
>ref|XP_852381.1| PREDICTED: similar to CG12199-PA, isoform A [Canis familiaris].
Length = 507
Score = 67.4 bits (163), Expect = 2e-11
Identities = 43/111 (38%), Positives = 50/111 (45%)
Frame = +1
Query: 220 CPEACVCAPGGQANCSGRALPAVPGGLRMSVRILLLDHNRVRALPPGAFVGAGALLRLDL 399
CP AC C C L VP G+ + L L N + L PG AL RL L
Sbjct: 26 CPAACRCY-SATVECGALRLRGVPPGIPPGTQTLFLQDNSIARLDPGILAPLAALRRLYL 84
Query: 400 HENGLRWVHAWAFWGLGALQQLDLSANQLEVLVPGTFVPLRALRDLSLAGN 552
H N LR + AF L +L L+ N+L L G F L LR L LAGN
Sbjct: 85 HNNSLRALEPGAFRAQSCLLELALTGNRLRGLRVGAFAGLAQLRALYLAGN 135
>ref|XP_545164.2| PREDICTED: similar to leucine rich repeat containing 15 [Canis
familiaris].
Length = 614
Score = 65.9 bits (159), Expect = 6e-11
Identities = 37/111 (33%), Positives = 55/111 (49%)
Frame = +1
Query: 220 CPEACVCAPGGQANCSGRALPAVPGGLRMSVRILLLDHNRVRALPPGAFVGAGALLRLDL 399
CP C C+ Q C+G + AVP L + L + + + L F+ AL+ L +
Sbjct: 56 CPSECTCSRASQVECTGARIVAVPAPLPWNAMSLQILNTHITELNESPFLNISALIALRI 115
Query: 400 HENGLRWVHAWAFWGLGALQQLDLSANQLEVLVPGTFVPLRALRDLSLAGN 552
+N L + AF LG+L+ L L+ N+L+VL G F L L L L+ N
Sbjct: 116 EKNELSHIMPGAFRNLGSLRYLSLANNKLQVLPIGLFQGLNNLESLLLSSN 166
Score = 49.3 bits (116), Expect = 6e-06
Identities = 30/82 (36%), Positives = 43/82 (52%)
Frame = +1
Query: 307 SVRILLLDHNRVRALPPGAFVGAGALLRLDLHENGLRWVHAWAFWGLGALQQLDLSANQL 486
++++L L NR+ +P G F G G L L L +N + + F LQ+L LS N +
Sbjct: 229 NLQVLRLYENRLSEIPMGTFDGCGNLQELALQQNQIGMLSPGLFHNNRNLQKLYLSNNHI 288
Query: 487 EVLVPGTFVPLRALRDLSLAGN 552
L PG F+ L L L+L GN
Sbjct: 289 SQLPPGIFMQLPQLNRLTLFGN 310
>ref|XP_543540.2| PREDICTED: similar to reticulon 4 receptor precursor [Canis
familiaris].
Length = 654
Score = 65.1 bits (157), Expect = 1e-10
Identities = 45/111 (40%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Frame = +1
Query: 220 CPEACVC--APGGQANCSGRALPAVPGGLRMSVRILLLDHNRVRALPPGAFVGAGALLRL 393
CP ACVC P +C + L AVP + S + + L NR+ +P F L L
Sbjct: 383 CPGACVCYNEPKVTTSCPQQGLQAVPTDIPASSQRVFLHGNRIVHVPAAGFRACRNLTIL 442
Query: 394 DLHENGLRWVHAWAFWGLGALQQLDLSAN-QLEVLVPGTFVPLRALRDLSL 543
LH N L + A AF GL L+QLDLS N QL + P TF L L L L
Sbjct: 443 WLHSNALARIDAAAFTGLALLEQLDLSDNAQLRAVDPATFRGLSRLHTLHL 493
Score = 54.3 bits (129), Expect = 2e-07
Identities = 35/78 (44%), Positives = 42/78 (53%)
Frame = +1
Query: 319 LLLDHNRVRALPPGAFVGAGALLRLDLHENGLRWVHAWAFWGLGALQQLDLSANQLEVLV 498
L L NR+ ++P AF G +L RL LH+N + VH AF LG L L L AN L L
Sbjct: 539 LFLHGNRIPSVPERAFRGLHSLDRLLLHQNRVARVHPHAFRDLGRLMTLYLFANNLSALP 598
Query: 499 PGTFVPLRALRDLSLAGN 552
PLRAL+ L L N
Sbjct: 599 AEVLAPLRALQYLRLNDN 616
>ref|XP_540322.2| PREDICTED: similar to leucine rich repeat neuronal 6D [Canis
familiaris].
Length = 591
Score = 65.1 bits (157), Expect = 1e-10
Identities = 43/112 (38%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Frame = +1
Query: 220 CPEACVCAPGGQAN-CSGRALPAVPGGLRMSVRILLLDHNRVRALPPGAFVGAGALLRLD 396
CP C C +A C+ R L VPGGL + +L L N + L G G L LD
Sbjct: 29 CPAVCDCTSQPRAVLCAHRRLETVPGGLPLDTELLDLSGNHLWGLQQGMLSRLGLLKELD 88
Query: 397 LHENGLRWVHAWAFWGLGALQQLDLSANQLEVLVPGTFVPLRALRDLSLAGN 552
L N L + AF GL +L L L N+L ++ PG F L AL+ L L N
Sbjct: 89 LSYNQLSILEPGAFHGLQSLLTLRLQGNRLRIMGPGVFSGLSALKLLDLRLN 140
Score = 52.4 bits (124), Expect = 7e-07
Identities = 33/79 (41%), Positives = 42/79 (53%)
Frame = +1
Query: 307 SVRILLLDHNRVRALPPGAFVGAGALLRLDLHENGLRWVHAWAFWGLGALQQLDLSANQL 486
S+ L L NR+R + PG F G AL LDL N + AF LG+LQQL++ N L
Sbjct: 107 SLLTLRLQGNRLRIMGPGVFSGLSALKLLDLRLNQIVLFLDRAFGELGSLQQLEVGDNHL 166
Query: 487 EVLVPGTFVPLRALRDLSL 543
+ PG F L L L+L
Sbjct: 167 VFVAPGAFAGLAKLSALTL 185
>ref|XP_539968.2| PREDICTED: similar to G protein-coupled receptor 124 [Canis
familiaris].
Length = 1297
Score = 63.5 bits (153), Expect = 3e-10
Identities = 40/99 (40%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Frame = +1
Query: 262 CSGRALPAVP--GGLRMSVRILLLDHNRVRALPPGAFVGAGALLRLDLHENGLRWVHAWA 435
C G LP P G L LLL +N++ L G+F+G L +LDL N + V A
Sbjct: 87 CGGGDLPEPPEPGLLPNGTVTLLLSNNKITGLRNGSFLGLSLLEKLDLRNNVISTVQPGA 146
Query: 436 FWGLGALQQLDLSANQLEVLVPGTFVPLRALRDLSLAGN 552
F GLG L++LDLS N++ L TF L L L+++GN
Sbjct: 147 FLGLGELKRLDLSNNRIGCLTSDTFQGLPRLLRLNISGN 185
Score = 49.7 bits (117), Expect = 5e-06
Identities = 29/73 (39%), Positives = 41/73 (56%)
Frame = +1
Query: 325 LDHNRVRALPPGAFVGAGALLRLDLHENGLRWVHAWAFWGLGALQQLDLSANQLEVLVPG 504
L +N + + PGAF+G G L RLDL N + + + F GL L +L++S N L PG
Sbjct: 134 LRNNVISTVQPGAFLGLGELKRLDLSNNRIGCLTSDTFQGLPRLLRLNISGNIFSSLQPG 193
Query: 505 TFVPLRALRDLSL 543
F L AL+ + L
Sbjct: 194 VFDELPALKVVDL 206
>ref|XP_539495.2| PREDICTED: similar to Carboxypeptidase N subunit 2 precursor
(Carboxypeptidase N polypeptide 2) (Carboxypeptidase N
83 kDa chain) (Carboxypeptidase N regulatory subunit)
(Carboxypeptidase N large subunit) [Canis familiaris].
Length = 915
Score = 63.5 bits (153), Expect = 3e-10
Identities = 44/115 (38%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Frame = +1
Query: 220 CPEACVCAPGGQANCSGRALPAVPGGLRM----SVRILLLDHNRVRALPPGAFVGAGALL 387
CPE C C C+ R L AVP + V L N + + F G L
Sbjct: 117 CPERCDCQHPQHLLCTNRGLRAVPKTSSLPSPQDVLTYSLGGNFITNITAFDFHRLGQLR 176
Query: 388 RLDLHENGLRWVHAWAFWGLGALQQLDLSANQLEVLVPGTFVPLRALRDLSLAGN 552
RLDL N +R +H F L L++L L N L+ LVPGT PLR LR L GN
Sbjct: 177 RLDLQYNQIRSLHPKTFEKLSRLEELYLGNNLLQALVPGTLAPLRKLRILYANGN 231
Score = 55.5 bits (132), Expect = 9e-08
Identities = 39/88 (44%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Frame = +1
Query: 295 GLRMSVRILLLDHNRVRALPPGAFVGAGALLRLDLHENGLRWVHAWAFWGLGALQQLDLS 474
GL V+ L LD N + ALP AF G LL L L N +R++ AF LG L+ L+LS
Sbjct: 243 GLESLVK-LRLDGNALGALPDAAFAPLGNLLYLHLESNRIRFLGKNAFAQLGKLRFLNLS 301
Query: 475 ANQLEVLV--PGTFVPLRALRDLSLAGN 552
AN+L+ + TF PLR+L L L+ N
Sbjct: 302 ANELQPSLRHAATFAPLRSLSTLILSAN 329
>ref|XP_534308.2| PREDICTED: similar to immunoglobulin superfamily, member 10 [Canis
familiaris].
Length = 2771
Score = 62.8 bits (151), Expect = 5e-10
Identities = 38/111 (34%), Positives = 55/111 (49%)
Frame = +1
Query: 220 CPEACVCAPGGQANCSGRALPAVPGGLRMSVRILLLDHNRVRALPPGAFVGAGALLRLDL 399
CP C C + +C+ R L ++P G+ +V + L +N + L F G L L L
Sbjct: 171 CPRRCACYVPTEVHCTFRYLTSIPDGISPNVERINLGYNSLVRLTETDFSGLNKLELLML 230
Query: 400 HENGLRWVHAWAFWGLGALQQLDLSANQLEVLVPGTFVPLRALRDLSLAGN 552
H NG+ + A F L ALQ L +S N++ L TF LR+L L + N
Sbjct: 231 HSNGIHTIPAKTFADLQALQVLKMSYNKIRKLQKDTFYGLRSLTRLHMDHN 281
Score = 49.7 bits (117), Expect = 5e-06
Identities = 26/84 (30%), Positives = 45/84 (53%)
Frame = +1
Query: 277 LPAVPGGLRMSVRILLLDHNRVRALPPGAFVGAGALLRLDLHENGLRWVHAWAFWGLGAL 456
+PA ++++L + +N++R L F G +L RL + N + +++ F+GL L
Sbjct: 238 IPAKTFADLQALQVLKMSYNKIRKLQKDTFYGLRSLTRLHMDHNNIEFINPEVFYGLTFL 297
Query: 457 QQLDLSANQLEVLVPGTFVPLRAL 528
+ + L NQL L P TFV + L
Sbjct: 298 RLVHLEGNQLTKLHPDTFVSFKYL 321
>ref|XP_851831.1| PREDICTED: similar to Leucine-rich repeat-containing G-protein
coupled receptor 5 precursor (Orphan G-protein coupled
receptor HG38) (G-protein coupled receptor 49) [Canis
familiaris].
Length = 728
Score = 62.8 bits (151), Expect = 5e-10
Identities = 48/139 (34%), Positives = 57/139 (41%), Gaps = 28/139 (20%)
Frame = +1
Query: 220 CPEACVCAPGGQ----ANCSGRALPAVPGGLRMSVRILLLDHNRVRALPP---------- 357
CP C C P G+ A+CS R L VP L + L L N + LPP
Sbjct: 34 CPARCQCEPDGRTLLRADCSDRGLSEVPSNLSVFTSYLDLSMNNISQLPPSALARLRFLE 93
Query: 358 --------------GAFVGAGALLRLDLHENGLRWVHAWAFWGLGALQQLDLSANQLEVL 495
GAF G +L L L N L V + A L +LQ L L AN + +
Sbjct: 94 ELRLAGNALTYIPKGAFAGLHSLKVLMLQNNHLGQVPSEALQNLRSLQSLRLDANHISAV 153
Query: 496 VPGTFVPLRALRDLSLAGN 552
PG F L ALR L L N
Sbjct: 154 PPGCFSGLHALRHLWLDDN 172
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 30,186,557
Number of extensions: 758576
Number of successful extensions: 4456
Number of sequences better than 1.0e-05: 41
Number of HSP's gapped: 4230
Number of HSP's successfully gapped: 63
Length of query: 356
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 252
Effective length of database: 15,407,560
Effective search space: 3882705120
Effective search space used: 3882705120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012722
(1068 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127645.1| PREDICTED: leucine-rich repeat-containing pr... 74 1e-13
Alignment gi|XP_003123071.1| PREDICTED: leucine-rich repeat and immunoglo... 69 6e-12
Alignment gi|XP_003355221.1| PREDICTED: leucine-rich repeat and immunoglo... 67 2e-11
Alignment gi|XP_003359360.1| PREDICTED: slit homolog 1 protein [Sus scrof... 65 8e-11
Alignment gi|XP_003126632.2| PREDICTED: leucine-rich repeat and transmemb... 65 8e-11
Alignment gi|XP_001927832.3| PREDICTED: reticulon-4 receptor [Sus scrofa]. 64 1e-10
Alignment gi|XP_003133414.1| PREDICTED: G-protein coupled receptor 124 [S... 64 1e-10
Alignment gi|XP_003134869.2| PREDICTED: TLR4 interactor with leucine rich... 64 2e-10
Alignment gi|XP_003358805.1| PREDICTED: leucine-rich repeat-containing pr... 64 2e-10
Alignment gi|XP_003134124.2| PREDICTED: slit homolog 3 protein [Sus scrof... 62 4e-10
>ref|XP_003127645.1| PREDICTED: leucine-rich repeat-containing protein 38-like [Sus
scrofa].
Length = 294
Score = 74.3 bits (181), Expect = 1e-13
Identities = 44/111 (39%), Positives = 54/111 (48%)
Frame = +1
Query: 220 CPEACVCAPGGQANCSGRALPAVPGGLRMSVRILLLDHNRVRALPPGAFVGAGALLRLDL 399
CPE C C +C R LP+VP + VR LL+ NR++ +P F+ G L+ LD
Sbjct: 28 CPEGCACTDPHTVDCRDRGLPSVPDPFPLDVRKLLVAGNRIQHIPEDFFIFYGDLVYLDF 87
Query: 400 HENGLRWVHAWAFWGLGALQQLDLSANQLEVLVPGTFVPLRALRDLSLAGN 552
N LR + F G L LDLS N L L G F L LSLA N
Sbjct: 88 RNNSLRSLEEGTFSGSAKLAFLDLSYNNLTQLGAGAFRSAGRLVKLSLANN 138
>ref|XP_003123071.1| PREDICTED: leucine-rich repeat and immunoglobulin-like
domain-containing nogo receptor-interacting protein
3-like [Sus scrofa].
Length = 592
Score = 68.6 bits (166), Expect = 6e-12
Identities = 43/112 (38%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Frame = +1
Query: 220 CPEACVCAPGGQA-NCSGRALPAVPGGLRMSVRILLLDHNRVRALPPGAFVGAGALLRLD 396
CP C C +A C R L AVP G+ R+L L NR+R L PG L LD
Sbjct: 25 CPARCECTAQTRAVACPRRRLTAVPDGIPAETRLLELSRNRIRCLNPGDLAALPLLEELD 84
Query: 397 LHENGLRWVHAWAFWGLGALQQLDLSANQLEVLVPGTFVPLRALRDLSLAGN 552
L +N + V AF L L++L L N L+++ PG F L L L L+ N
Sbjct: 85 LSDNVIAHVEPGAFANLPRLRELRLRGNLLKLIPPGVFTRLDNLTLLDLSEN 136
>ref|XP_003355221.1| PREDICTED: leucine-rich repeat and immunoglobulin-like domain
containing-NOGO receptor-interacting protein 4-like [Sus
scrofa].
Length = 593
Score = 66.6 bits (161), Expect = 2e-11
Identities = 44/112 (39%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Frame = +1
Query: 220 CPEACVCAPGGQAN-CSGRALPAVPGGLRMSVRILLLDHNRVRALPPGAFVGAGALLRLD 396
CP C C +A C+ R L AVPGGL + +L L NR+ L G G L LD
Sbjct: 31 CPAVCDCTSQPRAVLCAHRRLEAVPGGLPLDTELLDLSGNRLWGLQRGMLSRLGLLRELD 90
Query: 397 LHENGLRWVHAWAFWGLGALQQLDLSANQLEVLVPGTFVPLRALRDLSLAGN 552
L N L + AF GL +L L + N+L ++ PG F L AL L L N
Sbjct: 91 LSYNQLSTLEPGAFQGLQSLLTLRMQGNRLRIMGPGVFSGLSALTLLDLRLN 142
>ref|XP_003359360.1| PREDICTED: slit homolog 1 protein [Sus scrofa].
Length = 1190
Score = 64.7 bits (156), Expect = 8e-11
Identities = 39/111 (35%), Positives = 58/111 (52%)
Frame = +1
Query: 220 CPEACVCAPGGQANCSGRALPAVPGGLRMSVRILLLDHNRVRALPPGAFVGAGALLRLDL 399
CP C C+ G +C G+ L A+P L ++ + L+ N ++++PPGAF L R+DL
Sbjct: 272 CPAMCACS-NGIVDCRGKGLTAIPANLPETMTEIRLELNGIKSIPPGAFSPYRKLRRIDL 330
Query: 400 HENGLRWVHAWAFWGLGALQQLDLSANQLEVLVPGTFVPLRALRDLSLAGN 552
N + + AF GL +L L L N++ L G F L L+ L L N
Sbjct: 331 SNNQISEIAPDAFQGLRSLNSLVLYGNKITDLPRGVFGGLFTLQLLLLNAN 381
>ref|XP_003126632.2| PREDICTED: leucine-rich repeat and transmembrane domain-containing
protein 2-like [Sus scrofa].
Length = 259
Score = 64.7 bits (156), Expect = 8e-11
Identities = 43/112 (38%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Frame = +1
Query: 220 CPEACVCAPGG-QANCSGRALPAVPGGLRMSVRILLLDHNRVRALPPGAFVGAGALLRLD 396
CP +C C + +CSG L VP + + R LLL +NR+ +LP AF +L RLD
Sbjct: 39 CPFSCSCDSRSLEVDCSGLGLTVVPPDVPAATRTLLLQNNRLSSLPSWAFANLSSLQRLD 98
Query: 397 LHENGLRWVHAWAFWGLGALQQLDLSANQLEVLVPGTFVPLRALRDLSLAGN 552
L N L + AF L L +L L N L L P L LR L L+ N
Sbjct: 99 LSNNFLDRLPRAAFGDLANLTELQLRNNSLRALDPELLRHLPRLRHLDLSLN 150
>ref|XP_001927832.3| PREDICTED: reticulon-4 receptor [Sus scrofa].
Length = 528
Score = 64.3 bits (155), Expect = 1e-10
Identities = 44/111 (39%), Positives = 56/111 (50%), Gaps = 3/111 (2%)
Frame = +1
Query: 220 CPEACVC--APGGQANCSGRALPAVPGGLRMSVRILLLDHNRVRALPPGAFVGAGALLRL 393
CP ACVC P +C + L AVP + + + + L NR+ +P +F L L
Sbjct: 82 CPGACVCYNEPKVTTSCPQQGLQAVPADIPAASQRVFLHGNRITYVPAASFRACRNLTIL 141
Query: 394 DLHENGLRWVHAWAFWGLGALQQLDLSAN-QLEVLVPGTFVPLRALRDLSL 543
LH N L + A AF GL L+QLDLS N QL + P TF L L L L
Sbjct: 142 WLHSNALARIDATAFAGLVLLEQLDLSDNAQLRAVDPATFRGLGRLHTLHL 192
Score = 54.7 bits (130), Expect = 9e-08
Identities = 35/78 (44%), Positives = 42/78 (53%)
Frame = +1
Query: 319 LLLDHNRVRALPPGAFVGAGALLRLDLHENGLRWVHAWAFWGLGALQQLDLSANQLEVLV 498
L L NR+ ++P AF G +L RL LH+N + VH AF LG L L L AN L L
Sbjct: 238 LFLHGNRIPSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALS 297
Query: 499 PGTFVPLRALRDLSLAGN 552
PLRAL+ L L N
Sbjct: 298 AEALAPLRALQYLRLNDN 315
>ref|XP_003133414.1| PREDICTED: G-protein coupled receptor 124 [Sus scrofa].
Length = 1337
Score = 63.9 bits (154), Expect = 1e-10
Identities = 47/130 (36%), Positives = 65/130 (50%), Gaps = 19/130 (14%)
Frame = +1
Query: 220 CP---EACVCA-------PGGQAN-------CSGRALPAVP--GGLRMSVRILLLDHNRV 342
CP +C C+ GG +N C G LP P G L S LLL +N++
Sbjct: 36 CPVPIRSCKCSGERPKGLSGGSSNPARRRVVCGGGDLPEPPEPGLLPNSTVTLLLSNNKI 95
Query: 343 RALPPGAFVGAGALLRLDLHENGLRWVHAWAFWGLGALQQLDLSANQLEVLVPGTFVPLR 522
L G+F+G L +LDL N + V AF GLG L++LDLS N++ L TF +
Sbjct: 96 TGLRNGSFLGLSLLEKLDLRNNVISTVQPGAFLGLGELKRLDLSNNRIGCLSSETFQGIP 155
Query: 523 ALRDLSLAGN 552
L L+++GN
Sbjct: 156 KLLRLNISGN 165
Score = 48.5 bits (114), Expect = 6e-06
Identities = 27/69 (39%), Positives = 39/69 (56%)
Frame = +1
Query: 325 LDHNRVRALPPGAFVGAGALLRLDLHENGLRWVHAWAFWGLGALQQLDLSANQLEVLVPG 504
L +N + + PGAF+G G L RLDL N + + + F G+ L +L++S N L PG
Sbjct: 114 LRNNVISTVQPGAFLGLGELKRLDLSNNRIGCLSSETFQGIPKLLRLNISGNIFSRLQPG 173
Query: 505 TFVPLRALR 531
F L AL+
Sbjct: 174 VFDELPALK 182
>ref|XP_003134869.2| PREDICTED: TLR4 interactor with leucine rich repeats-like [Sus
scrofa].
Length = 809
Score = 63.5 bits (153), Expect = 2e-10
Identities = 43/115 (37%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Frame = +1
Query: 220 CPEACVCAPGGQANCSGRALPAVPGGLRM----SVRILLLDHNRVRALPPGAFVGAGALL 387
CPE C C C+ R L AVP + V L N + + F G L
Sbjct: 27 CPERCDCQHPQHLLCTNRGLRAVPKTSSLPSPQDVLTYSLGGNFITNITAFDFHRLGQLR 86
Query: 388 RLDLHENGLRWVHAWAFWGLGALQQLDLSANQLEVLVPGTFVPLRALRDLSLAGN 552
RLDL N +R++H F L L++L L N L+ L PGT PLR LR L GN
Sbjct: 87 RLDLQYNQIRFLHPKTFEKLSRLEELYLGNNLLQTLAPGTLAPLRKLRILYANGN 141
Score = 51.6 bits (122), Expect = 7e-07
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Frame = +1
Query: 295 GLRMSVRILLLDHNRVRALPPGAFVGAGALLRLDLHENGLRWVHAWAFWGLGALQQLDLS 474
GL V+ L LD N + ALP F LL L L N +R++ AF LG L+ L+LS
Sbjct: 153 GLESLVK-LRLDGNALGALPDAVFAPLSNLLYLHLESNRIRFLGKNAFAQLGKLRFLNLS 211
Query: 475 ANQLEVLV--PGTFVPLRALRDLSLAGN 552
AN+L+ + TF PLR+L L L+ N
Sbjct: 212 ANELQPSLRHAATFAPLRSLSTLILSAN 239
>ref|XP_003358805.1| PREDICTED: leucine-rich repeat-containing protein 15-like [Sus
scrofa].
Length = 581
Score = 63.5 bits (153), Expect = 2e-10
Identities = 37/111 (33%), Positives = 54/111 (48%)
Frame = +1
Query: 220 CPEACVCAPGGQANCSGRALPAVPGGLRMSVRILLLDHNRVRALPPGAFVGAGALLRLDL 399
CP C C+ Q C G + AVP L + L + + + L F+ AL+ L +
Sbjct: 25 CPSECTCSRASQVECIGARIVAVPTPLPWNAMSLQILNTHITELNESPFLNISALIALRI 84
Query: 400 HENGLRWVHAWAFWGLGALQQLDLSANQLEVLVPGTFVPLRALRDLSLAGN 552
+N L + AF LG+L+ L L+ N+L+VL G F L L L L+ N
Sbjct: 85 EKNELSHIMPGAFRNLGSLRYLSLANNKLQVLPVGLFQGLDNLESLLLSSN 135
Score = 48.9 bits (115), Expect = 5e-06
Identities = 31/82 (37%), Positives = 43/82 (52%)
Frame = +1
Query: 307 SVRILLLDHNRVRALPPGAFVGAGALLRLDLHENGLRWVHAWAFWGLGALQQLDLSANQL 486
++++L L NR+ LP G F G G L L L +N + + F LQ+L LS N +
Sbjct: 198 NLQVLRLYENRLSDLPMGCFDGLGNLQELALQQNQIGMLPPGLFHNNRNLQRLYLSNNHI 257
Query: 487 EVLVPGTFVPLRALRDLSLAGN 552
L PG F+ L L L+L GN
Sbjct: 258 SQLPPGIFMQLPQLNRLTLFGN 279
>ref|XP_003134124.2| PREDICTED: slit homolog 3 protein [Sus scrofa].
Length = 1741
Score = 62.4 bits (150), Expect = 4e-10
Identities = 36/111 (32%), Positives = 58/111 (52%)
Frame = +1
Query: 220 CPEACVCAPGGQANCSGRALPAVPGGLRMSVRILLLDHNRVRALPPGAFVGAGALLRLDL 399
CP AC C+ +C G+ L +P L + + L+ N ++++P GAF L R+D+
Sbjct: 388 CPSACTCS-NNIVDCRGKGLTEIPANLPEGIVEIRLEQNSIKSIPAGAFTQYKKLKRIDI 446
Query: 400 HENGLRWVHAWAFWGLGALQQLDLSANQLEVLVPGTFVPLRALRDLSLAGN 552
+N + + A AF GL +L L L N++ + G F L +L+ L L N
Sbjct: 447 SKNQISDIAADAFQGLKSLTSLVLYGNKITEIPKGLFDGLVSLQLLLLNAN 497
Score = 55.1 bits (131), Expect = 7e-08
Identities = 38/111 (34%), Positives = 54/111 (48%)
Frame = +1
Query: 220 CPEACVCAPGGQANCSGRALPAVPGGLRMSVRILLLDHNRVRALPPGAFVGAGALLRLDL 399
CPE C C CS R L A+P G+ V L L+ N + A+P + L +DL
Sbjct: 1099 CPEQCTCVET-VVRCSNRGLRALPRGIPKDVTELYLEGNHLTAVPRELSIFRHLTL-IDL 1156
Query: 400 HENGLRWVHAWAFWGLGALQQLDLSANQLEVLVPGTFVPLRALRDLSLAGN 552
N + + + F + L L LS N+L + +F LR+LR L+L GN
Sbjct: 1157 SNNSIGMLTNYTFSNMSHLSTLILSYNRLRCIPIHSFNGLRSLRVLTLHGN 1207
Score = 48.1 bits (113), Expect = 8e-06
Identities = 30/82 (36%), Positives = 46/82 (56%)
Frame = +1
Query: 307 SVRILLLDHNRVRALPPGAFVGAGALLRLDLHENGLRWVHAWAFWGLGALQQLDLSANQL 486
++R + L +N+++ + GAF GA ++ L L N L VH F GL L+ L L +N +
Sbjct: 932 NLRKINLSNNKIKEVREGAFDGAASVQELMLTGNQLETVHGRMFRGLSGLKTLMLRSNLI 991
Query: 487 EVLVPGTFVPLRALRDLSLAGN 552
+ TFV L ++R LSL N
Sbjct: 992 SCVSNDTFVGLSSVRLLSLYDN 1013
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 20,271,057
Number of extensions: 712844
Number of successful extensions: 3029
Number of sequences better than 1.0e-05: 46
Number of HSP's gapped: 2864
Number of HSP's successfully gapped: 58
Length of query: 356
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 256
Effective length of database: 8,854,232
Effective search space: 2266683392
Effective search space used: 2266683392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012722
(1068 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_666229.1| leucine-rich repeat-containing protein 26 precu... 236 3e-62
Alignment gi|NP_001156455.1| leucine-rich repeat-containing protein 38 pr... 75 1e-13
Alignment gi|NP_001013780.2| leucine-rich repeat and immunoglobulin-like ... 70 3e-12
Alignment gi|NP_075358.1| reticulon-4 receptor precursor [Mus musculus]. 69 6e-12
Alignment gi|NP_001182473.1| leucine-rich repeat-containing protein 3C [M... 65 1e-10
Alignment gi|NP_796224.1| leucine-rich repeat and immunoglobulin-like dom... 65 1e-10
Alignment gi|NP_056563.2| slit homolog 1 protein precursor [Mus musculus]. 64 2e-10
Alignment gi|NP_001156356.1| immunoglobulin superfamily member 10 precurs... 64 3e-10
Alignment gi|NP_080093.1| TLR4 interactor with leucine rich repeats precu... 64 3e-10
Alignment gi|NP_848919.3| slit homolog 2 protein precursor [Mus musculus]. 64 3e-10
>ref|NP_666229.1| leucine-rich repeat-containing protein 26 precursor [Mus musculus].
Length = 331
Score = 236 bits (601), Expect = 3e-62
Identities = 138/266 (51%), Positives = 144/266 (54%)
Frame = +1
Query: 163 VWTQXXXXXXXXXXXXXXDCPEACVCAPGGQANCSGRALPAVPGGLRMSVRILLLDHNRV 342
VWTQ +CPEAC C+ GG+ANCS ALPAVP L VR LLLDHNRV
Sbjct: 24 VWTQEDIGTAPSKSPVAPECPEACSCSLGGKANCSALALPAVPADLSWQVRSLLLDHNRV 83
Query: 343 RALPPGAFVGAGALLRLDLHENGLRWVHAWAFWGLGALQQLDLSANQLEVLVPGTFVPLR 522
ALPPGAF AGALL LDL EN LR VHA AFWGLG LQ LDLS+NQLE L PGTF PLR
Sbjct: 84 SALPPGAFANAGALLYLDLRENRLRSVHARAFWGLGVLQWLDLSSNQLETLPPGTFAPLR 143
Query: 523 ALRDLSLAGNXXXXXXXXXXXXXXXXXXXXXXDNEXXXXXXXXXXXXXXXDTXXXXXXXX 702
AL LSLAGN DN D
Sbjct: 144 ALSFLSLAGNRLALLEPSILGPLPLLRVLSLQDNSLSAIEAGLLNNLPALDVLRLHGNPW 203
Query: 703 XXXXXXXXXXXXXXXXXXXXXEAETLLCVSPGRLTFSPLAALPDAAFSRCAQPLALRDLA 882
E ETLLCVSP T S L A PDAAF +C Q LA RDLA
Sbjct: 204 TCNCALRPLCTWLRKHPRPASETETLLCVSPRLQTLSLLTAFPDAAFKQCTQSLAARDLA 263
Query: 883 VVYALGPASFLASLATCLGLGSLLTA 960
VVYALGP SFLASLA CL LGS+LTA
Sbjct: 264 VVYALGPVSFLASLAICLALGSVLTA 289
>ref|NP_001156455.1| leucine-rich repeat-containing protein 38 precursor [Mus musculus].
Length = 298
Score = 74.7 bits (182), Expect = 1e-13
Identities = 44/111 (39%), Positives = 54/111 (48%)
Frame = +1
Query: 220 CPEACVCAPGGQANCSGRALPAVPGGLRMSVRILLLDHNRVRALPPGAFVGAGALLRLDL 399
CP C C +C R LP+VP + VR LL+ NR++ +P F+ G L+ LD
Sbjct: 32 CPAGCACTDPHTVDCRDRGLPSVPDPFPLDVRKLLVAGNRIQQIPEDFFIFHGDLVYLDF 91
Query: 400 HENGLRWVHAWAFWGLGALQQLDLSANQLEVLVPGTFVPLRALRDLSLAGN 552
N LR + F G G L LDLS N L L G F L LSLA N
Sbjct: 92 RNNSLRSLEEGTFSGSGKLAFLDLSYNNLTQLGAGAFRSAGRLVKLSLANN 142
>ref|NP_001013780.2| leucine-rich repeat and immunoglobulin-like domain-containing nogo
receptor-interacting protein 3 precursor [Mus musculus].
Length = 589
Score = 70.1 bits (170), Expect = 3e-12
Identities = 42/112 (37%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Frame = +1
Query: 220 CPEACVCAPGGQA-NCSGRALPAVPGGLRMSVRILLLDHNRVRALPPGAFVGAGALLRLD 396
CP C C+ + C R L A+P G+ R+L L NR+R L PG L LD
Sbjct: 24 CPARCECSASTRTVACGRRRLTAIPEGIPAETRMLELSRNRIRCLNPGDLASLPTLEELD 83
Query: 397 LHENGLRWVHAWAFWGLGALQQLDLSANQLEVLVPGTFVPLRALRDLSLAGN 552
L+ N + V AF L L+ L L NQL+++ PG F L +L L L+ N
Sbjct: 84 LNHNVIAHVEPGAFANLPRLRVLRLRGNQLKLIPPGVFTHLDSLTLLDLSEN 135
>ref|NP_075358.1| reticulon-4 receptor precursor [Mus musculus].
Length = 473
Score = 68.9 bits (167), Expect = 6e-12
Identities = 47/111 (42%), Positives = 58/111 (52%), Gaps = 3/111 (2%)
Frame = +1
Query: 220 CPEACVC--APGGQANCSGRALPAVPGGLRMSVRILLLDHNRVRALPPGAFVGAGALLRL 393
CP ACVC P +C + L AVP G+ S + + L NR+ +P +F L L
Sbjct: 27 CPGACVCYNEPKVTTSCPQQGLQAVPTGIPASSQRIFLHGNRISHVPAASFQSCRNLTIL 86
Query: 394 DLHENGLRWVHAWAFWGLGALQQLDLSAN-QLEVLVPGTFVPLRALRDLSL 543
LH N L + A AF GL L+QLDLS N QL V+ P TF L L L L
Sbjct: 87 WLHSNALARIDAAAFTGLTLLEQLDLSDNAQLHVVDPTTFHGLGHLHTLHL 137
Score = 53.9 bits (128), Expect = 2e-07
Identities = 34/78 (43%), Positives = 44/78 (56%)
Frame = +1
Query: 319 LLLDHNRVRALPPGAFVGAGALLRLDLHENGLRWVHAWAFWGLGALQQLDLSANQLEVLV 498
L L NR+ ++P AF G +L RL LH+N + VH AF LG L L L AN L +L
Sbjct: 183 LFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLP 242
Query: 499 PGTFVPLRALRDLSLAGN 552
+PLR+L+ L L N
Sbjct: 243 AEVLMPLRSLQYLRLNDN 260
>ref|NP_001182473.1| leucine-rich repeat-containing protein 3C [Mus musculus].
Length = 255
Score = 64.7 bits (156), Expect = 1e-10
Identities = 47/110 (42%), Positives = 58/110 (52%), Gaps = 4/110 (3%)
Frame = +1
Query: 223 PEACVCAP--GGQA-NCSGRALPAVPGGLRMSVRILLLDHNRVRALPPGAFVGAGALLRL 393
P+ C A G Q CS L AVP G+ R L LD N++ ++P GAF AL L
Sbjct: 28 PQGCYVAEEAGEQTFRCSRAGLSAVPNGIPNDTRKLYLDANQLASVPAGAFQHLPALEEL 87
Query: 394 DLHENGLRWVHAWAFWGL-GALQQLDLSANQLEVLVPGTFVPLRALRDLS 540
DL N L + AF GL G L+ LDLSANQL + FV L+ +LS
Sbjct: 88 DLSHNALVHLSGAAFQGLEGTLRHLDLSANQLASVPVAAFVGLQIQVNLS 137
>ref|NP_796224.1| leucine-rich repeat and immunoglobulin-like domain containing-NOGO
receptor-interacting protein 4 [Mus musculus].
Length = 618
Score = 64.7 bits (156), Expect = 1e-10
Identities = 43/112 (38%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Frame = +1
Query: 220 CPEACVCAPGGQAN-CSGRALPAVPGGLRMSVRILLLDHNRVRALPPGAFVGAGALLRLD 396
CP C C +A C+ R L +PGGL + +L L NR+ L G G L LD
Sbjct: 56 CPTVCDCTSQTRAVFCAHRRLDTIPGGLPLDTELLDLSGNRLWGLQRGMLSRLGQLQELD 115
Query: 397 LHENGLRWVHAWAFWGLGALQQLDLSANQLEVLVPGTFVPLRALRDLSLAGN 552
L N L + AF GL +L L L N+L ++ PG F L AL L L N
Sbjct: 116 LSYNQLSTLEPGAFHGLQSLLTLRLQGNRLRIVGPGIFSGLTALTLLDLRLN 167
>ref|NP_056563.2| slit homolog 1 protein precursor [Mus musculus].
Length = 1531
Score = 64.3 bits (155), Expect = 2e-10
Identities = 39/111 (35%), Positives = 58/111 (52%)
Frame = +1
Query: 220 CPEACVCAPGGQANCSGRALPAVPGGLRMSVRILLLDHNRVRALPPGAFVGAGALLRLDL 399
CP C C+ G +C G+ L A+P L ++ + L+ N ++++PPGAF L R+DL
Sbjct: 282 CPAMCSCS-SGIVDCRGKGLTAIPANLPETMTEIRLELNGIKSIPPGAFSPYRKLRRIDL 340
Query: 400 HENGLRWVHAWAFWGLGALQQLDLSANQLEVLVPGTFVPLRALRDLSLAGN 552
N + + AF GL +L L L N++ L G F L L+ L L N
Sbjct: 341 SNNQIAEIAPDAFQGLRSLNSLVLYGNKITDLPRGVFGGLYTLQLLLLNAN 391
Score = 55.5 bits (132), Expect = 7e-08
Identities = 40/111 (36%), Positives = 54/111 (48%)
Frame = +1
Query: 220 CPEACVCAPGGQANCSGRALPAVPGGLRMSVRILLLDHNRVRALPPGAFVGAGALLRLDL 399
CP+ C C CS + L A+P G+ +V L LD N+ L PG L +DL
Sbjct: 734 CPQECACLDT-VVRCSNKHLQALPKGIPKNVTELYLDGNQF-TLVPGQLSTFKYLQLVDL 791
Query: 400 HENGLRWVHAWAFWGLGALQQLDLSANQLEVLVPGTFVPLRALRDLSLAGN 552
N + + +F + L L LS N L+ + P F LR+LR LSL GN
Sbjct: 792 SNNKISSLSNSSFTNMSQLTTLILSYNALQCIPPLAFQGLRSLRLLSLHGN 842
Score = 54.3 bits (129), Expect = 2e-07
Identities = 37/111 (33%), Positives = 52/111 (46%)
Frame = +1
Query: 220 CPEACVCAPGGQANCSGRALPAVPGGLRMSVRILLLDHNRVRALPPGAFVGAGALLRLDL 399
CP C C G +C G L A+P + + L L+ N + + F G L L L
Sbjct: 34 CPALCTCT-GTTVDCHGTGLQAIPKNIPRNTERLELNGNNITRIHKNDFAGLKQLRVLQL 92
Query: 400 HENGLRWVHAWAFWGLGALQQLDLSANQLEVLVPGTFVPLRALRDLSLAGN 552
EN + V AF + L++L L+ NQL+VL F +AL L L+ N
Sbjct: 93 MENQIGAVERGAFDDMKELERLRLNRNQLQVLPELLFQNNQALSRLDLSEN 143
>ref|NP_001156356.1| immunoglobulin superfamily member 10 precursor [Mus musculus].
Length = 2594
Score = 63.5 bits (153), Expect = 3e-10
Identities = 37/111 (33%), Positives = 56/111 (50%)
Frame = +1
Query: 220 CPEACVCAPGGQANCSGRALPAVPGGLRMSVRILLLDHNRVRALPPGAFVGAGALLRLDL 399
CP C C + +C+ R L ++P G+ +V + L +N + L F G L L L
Sbjct: 29 CPRRCACYVPTEVHCTFRYLTSIPDGIPANVERVNLGYNSLTRLTENDFSGLSRLELLML 88
Query: 400 HENGLRWVHAWAFWGLGALQQLDLSANQLEVLVPGTFVPLRALRDLSLAGN 552
H NG+ V F GL +LQ L +S N+++++ T LR+L L L N
Sbjct: 89 HSNGIHRVSDKTFSGLQSLQVLKMSYNKVQIIEKDTLYGLRSLTRLHLDHN 139
>ref|NP_080093.1| TLR4 interactor with leucine rich repeats precursor [Mus musculus].
Length = 809
Score = 63.5 bits (153), Expect = 3e-10
Identities = 44/115 (38%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Frame = +1
Query: 220 CPEACVCAPGGQANCSGRALPAVPGGLRM----SVRILLLDHNRVRALPPGAFVGAGALL 387
CPE C C C+ R L AVP + V L N + + F G L
Sbjct: 27 CPERCDCQHPQHLLCTNRGLRAVPKTSSLPSPQDVLTYSLGGNFITNITAFDFHRLGQLR 86
Query: 388 RLDLHENGLRWVHAWAFWGLGALQQLDLSANQLEVLVPGTFVPLRALRDLSLAGN 552
RLDL N +R +H F L L++L L N L+ LVPGT PLR LR L GN
Sbjct: 87 RLDLQYNQIRSLHPKTFEKLSRLEELYLGNNLLQALVPGTLAPLRKLRILYANGN 141
Score = 54.7 bits (130), Expect = 1e-07
Identities = 39/88 (44%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Frame = +1
Query: 295 GLRMSVRILLLDHNRVRALPPGAFVGAGALLRLDLHENGLRWVHAWAFWGLGALQQLDLS 474
GL V+ L LD N + ALP F G LL L L N +R++ AF LG L+ L+LS
Sbjct: 153 GLESLVK-LRLDGNVLGALPDAVFAPLGNLLYLHLESNRIRFLGKNAFSQLGKLRFLNLS 211
Query: 475 ANQLEVLV--PGTFVPLRALRDLSLAGN 552
AN+L+ + TFVPLR+L L L+ N
Sbjct: 212 ANELQPSLRHAATFVPLRSLSTLILSAN 239
>ref|NP_848919.3| slit homolog 2 protein precursor [Mus musculus].
Length = 1521
Score = 63.5 bits (153), Expect = 3e-10
Identities = 39/111 (35%), Positives = 56/111 (50%)
Frame = +1
Query: 220 CPEACVCAPGGQANCSGRALPAVPGGLRMSVRILLLDHNRVRALPPGAFVGAGALLRLDL 399
CP AC C+ +C G+ L +P L ++ + L+ N +R +PPGAF L RLDL
Sbjct: 273 CPAACTCS-NNIVDCRGKGLTEIPTNLPETITEIRLEQNSIRVIPPGAFSPYKKLRRLDL 331
Query: 400 HENGLRWVHAWAFWGLGALQQLDLSANQLEVLVPGTFVPLRALRDLSLAGN 552
N + + AF GL +L L L N++ L F L +L+ L L N
Sbjct: 332 SNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNAN 382
Score = 50.1 bits (118), Expect = 3e-06
Identities = 41/136 (30%), Positives = 57/136 (41%), Gaps = 25/136 (18%)
Frame = +1
Query: 220 CPEACVCAPGGQANCSGRALPAVP-------------------------GGLRMSVRILL 324
CP C C+ G +C G AL +VP GLR +R+L
Sbjct: 28 CPAQCSCS-GSTVDCHGLALRSVPRNIPRNTERLDLNGNNITRITKIDFAGLR-HLRVLQ 85
Query: 325 LDHNRVRALPPGAFVGAGALLRLDLHENGLRWVHAWAFWGLGALQQLDLSANQLEVLVPG 504
L NR+ + GAF L RL L+ N L+ F G L +LDLS NQ++ +
Sbjct: 86 LMENRISTIERGAFQDLKELERLRLNRNNLQLFPELLFLGTAKLYRLDLSENQIQAIPRK 145
Query: 505 TFVPLRALRDLSLAGN 552
F +++L L N
Sbjct: 146 AFRGAVDIKNLQLDYN 161
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 24,498,145
Number of extensions: 592712
Number of successful extensions: 4109
Number of sequences better than 1.0e-05: 55
Number of HSP's gapped: 3635
Number of HSP's successfully gapped: 70
Length of query: 356
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 254
Effective length of database: 12,553,887
Effective search space: 3188687298
Effective search space used: 3188687298
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012722
(1068 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001013675.1| leucine-rich repeat-containing protein 26 pr... 261 8e-70
Alignment gi|NP_001094861.1| leucine-rich repeat and immunoglobulin-like ... 74 2e-13
Alignment gi|NP_001010847.1| leucine-rich repeat-containing protein 38 [H... 72 9e-13
Alignment gi|NP_001019849.2| leucine-rich repeat-containing protein 24 pr... 72 1e-12
Alignment gi|NP_001004432.1| leucine-rich repeat and immunoglobulin-like ... 67 4e-11
Alignment gi|NP_075380.1| reticulon-4 receptor precursor [Homo sapiens]. 65 8e-11
Alignment gi|NP_570843.2| leucine-rich repeat-containing protein 15 isofo... 65 1e-10
Alignment gi|NP_001128529.2| leucine-rich repeat-containing protein 15 is... 65 1e-10
Alignment gi|NP_003052.2| slit homolog 1 protein precursor [Homo sapiens]. 65 1e-10
Alignment gi|NP_116166.9| G-protein coupled receptor 124 precursor [Homo ... 64 2e-10
>ref|NP_001013675.1| leucine-rich repeat-containing protein 26 precursor [Homo sapiens].
Length = 334
Score = 261 bits (667), Expect = 8e-70
Identities = 146/266 (54%), Positives = 153/266 (57%)
Frame = +1
Query: 163 VWTQXXXXXXXXXXXXXXDCPEACVCAPGGQANCSGRALPAVPGGLRMSVRILLLDHNRV 342
VW Q DCPE C C PGG A+CS +LPAVP GL + +R LLLDHNRV
Sbjct: 24 VWAQVSATASPSGSLGAPDCPEVCTCVPGGLASCSALSLPAVPPGLSLRLRALLLDHNRV 83
Query: 343 RALPPGAFVGAGALLRLDLHENGLRWVHAWAFWGLGALQQLDLSANQLEVLVPGTFVPLR 522
RALPPGAF GAGAL RLDL ENGL VH AFWGLGALQ LDLSANQLE L PGTF PLR
Sbjct: 84 RALPPGAFAGAGALQRLDLRENGLHSVHVRAFWGLGALQLLDLSANQLEALAPGTFAPLR 143
Query: 523 ALRDLSLAGNXXXXXXXXXXXXXXXXXXXXXXDNEXXXXXXXXXXXXXXXDTXXXXXXXX 702
ALR+LSLAGN DNE D
Sbjct: 144 ALRNLSLAGNRLARLEPAALGALPLLRSLSLQDNELAALAPGLLGRLPALDALHLRGNPW 203
Query: 703 XXXXXXXXXXXXXXXXXXXXXEAETLLCVSPGRLTFSPLAALPDAAFSRCAQPLALRDLA 882
EAET+LCV PGRLT SPL A DAAFS CAQPLALRDLA
Sbjct: 204 GCGCALRPLCAWLRRHPLPASEAETVLCVWPGRLTLSPLTAFSDAAFSHCAQPLALRDLA 263
Query: 883 VVYALGPASFLASLATCLGLGSLLTA 960
VVY LGPASFL SLA+CL LGS LTA
Sbjct: 264 VVYTLGPASFLVSLASCLALGSGLTA 289
>ref|NP_001094861.1| leucine-rich repeat and immunoglobulin-like domain-containing nogo
receptor-interacting protein 3 precursor [Homo sapiens].
Length = 592
Score = 74.3 bits (181), Expect = 2e-13
Identities = 46/112 (41%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Frame = +1
Query: 220 CPEACVCAPGGQA-NCSGRALPAVPGGLRMSVRILLLDHNRVRALPPGAFVGAGALLRLD 396
CP C C +A C+ R L AVP G+ R+L L NR+R L PG AL LD
Sbjct: 25 CPARCECTVQTRAVACTRRRLTAVPDGIPAETRLLELSRNRIRCLNPGDLAALPALEELD 84
Query: 397 LHENGLRWVHAWAFWGLGALQQLDLSANQLEVLVPGTFVPLRALRDLSLAGN 552
L EN + V AF L L+ L L NQL+++ PG F L L L L+ N
Sbjct: 85 LSENAIAHVEPGAFANLPRLRVLRLRGNQLKLIPPGVFTRLDNLTLLDLSEN 136
>ref|NP_001010847.1| leucine-rich repeat-containing protein 38 [Homo sapiens].
Length = 294
Score = 72.0 bits (175), Expect = 9e-13
Identities = 43/111 (38%), Positives = 53/111 (47%)
Frame = +1
Query: 220 CPEACVCAPGGQANCSGRALPAVPGGLRMSVRILLLDHNRVRALPPGAFVGAGALLRLDL 399
CP C C +C R LP+VP + VR LL+ NR++ +P F+ G L+ LD
Sbjct: 28 CPAGCACTDPHTVDCRDRGLPSVPDPFPLDVRKLLVAGNRIQRIPEDFFIFYGDLVYLDF 87
Query: 400 HENGLRWVHAWAFWGLGALQQLDLSANQLEVLVPGTFVPLRALRDLSLAGN 552
N LR + F G L LDLS N L L G F L LSLA N
Sbjct: 88 RNNSLRSLEEGTFSGSAKLVFLDLSYNNLTQLGAGAFRSAGRLVKLSLANN 138
>ref|NP_001019849.2| leucine-rich repeat-containing protein 24 precursor [Homo sapiens].
Length = 513
Score = 71.6 bits (174), Expect = 1e-12
Identities = 46/111 (41%), Positives = 54/111 (48%)
Frame = +1
Query: 220 CPEACVCAPGGQANCSGRALPAVPGGLRMSVRILLLDHNRVRALPPGAFVGAGALLRLDL 399
CP AC C C L VP G+ + L L N + L PGA AL RL L
Sbjct: 23 CPAACRCY-SATVECGALRLRVVPLGIPPGTQTLFLQDNNIARLEPGALAPLAALRRLYL 81
Query: 400 HENGLRWVHAWAFWGLGALQQLDLSANQLEVLVPGTFVPLRALRDLSLAGN 552
H N LR + A AF L +L L++N+L L G FV L LR L LAGN
Sbjct: 82 HNNSLRALEAGAFRAQPRLLELALTSNRLRGLRSGAFVGLAQLRVLYLAGN 132
>ref|NP_001004432.1| leucine-rich repeat and immunoglobulin-like domain-containing nogo
receptor-interacting protein 4 precursor [Homo sapiens].
Length = 593
Score = 66.6 bits (161), Expect = 4e-11
Identities = 45/112 (40%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Frame = +1
Query: 220 CPEACVCAPGGQAN-CSGRALPAVPGGLRMSVRILLLDHNRVRALPPGAFVGAGALLRLD 396
CP C C QA C R L AVPGGL + +L L NR+ L G L LD
Sbjct: 31 CPAVCDCTSQPQAVLCGHRQLEAVPGGLPLDTELLDLSGNRLWGLQQGMLSRLSLLQELD 90
Query: 397 LHENGLRWVHAWAFWGLGALQQLDLSANQLEVLVPGTFVPLRALRDLSLAGN 552
L N L + AF GL +L L L N+L ++ PG F L AL L L N
Sbjct: 91 LSYNQLSTLEPGAFHGLQSLLTLRLQGNRLRIMGPGVFSGLSALTLLDLRLN 142
>ref|NP_075380.1| reticulon-4 receptor precursor [Homo sapiens].
Length = 473
Score = 65.5 bits (158), Expect = 8e-11
Identities = 45/111 (40%), Positives = 57/111 (51%), Gaps = 3/111 (2%)
Frame = +1
Query: 220 CPEACVC--APGGQANCSGRALPAVPGGLRMSVRILLLDHNRVRALPPGAFVGAGALLRL 393
CP ACVC P +C + L AVP G+ + + + L NR+ +P +F L L
Sbjct: 27 CPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTIL 86
Query: 394 DLHENGLRWVHAWAFWGLGALQQLDLSAN-QLEVLVPGTFVPLRALRDLSL 543
LH N L + A AF GL L+QLDLS N QL + P TF L L L L
Sbjct: 87 WLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 137
Score = 55.1 bits (131), Expect = 1e-07
Identities = 35/78 (44%), Positives = 42/78 (53%)
Frame = +1
Query: 319 LLLDHNRVRALPPGAFVGAGALLRLDLHENGLRWVHAWAFWGLGALQQLDLSANQLEVLV 498
L L NR+ ++P AF G +L RL LH+N + VH AF LG L L L AN L L
Sbjct: 183 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 242
Query: 499 PGTFVPLRALRDLSLAGN 552
PLRAL+ L L N
Sbjct: 243 TEALAPLRALQYLRLNDN 260
>ref|NP_570843.2| leucine-rich repeat-containing protein 15 isoform b [Homo sapiens].
Length = 581
Score = 65.1 bits (157), Expect = 1e-10
Identities = 37/111 (33%), Positives = 56/111 (50%)
Frame = +1
Query: 220 CPEACVCAPGGQANCSGRALPAVPGGLRMSVRILLLDHNRVRALPPGAFVGAGALLRLDL 399
CP C C+ Q C+G + AVP L + L + + + L F+ AL+ L +
Sbjct: 25 CPSECTCSRASQVECTGARIVAVPTPLPWNAMSLQILNTHITELNESPFLNISALIALRI 84
Query: 400 HENGLRWVHAWAFWGLGALQQLDLSANQLEVLVPGTFVPLRALRDLSLAGN 552
+N L + AF LG+L+ L L+ N+L+VL G F L +L L L+ N
Sbjct: 85 EKNELSRITPGAFRNLGSLRYLSLANNKLQVLPIGLFQGLDSLESLLLSSN 135
>ref|NP_001128529.2| leucine-rich repeat-containing protein 15 isoform a [Homo sapiens].
Length = 587
Score = 65.1 bits (157), Expect = 1e-10
Identities = 37/111 (33%), Positives = 56/111 (50%)
Frame = +1
Query: 220 CPEACVCAPGGQANCSGRALPAVPGGLRMSVRILLLDHNRVRALPPGAFVGAGALLRLDL 399
CP C C+ Q C+G + AVP L + L + + + L F+ AL+ L +
Sbjct: 31 CPSECTCSRASQVECTGARIVAVPTPLPWNAMSLQILNTHITELNESPFLNISALIALRI 90
Query: 400 HENGLRWVHAWAFWGLGALQQLDLSANQLEVLVPGTFVPLRALRDLSLAGN 552
+N L + AF LG+L+ L L+ N+L+VL G F L +L L L+ N
Sbjct: 91 EKNELSRITPGAFRNLGSLRYLSLANNKLQVLPIGLFQGLDSLESLLLSSN 141
>ref|NP_003052.2| slit homolog 1 protein precursor [Homo sapiens].
Length = 1534
Score = 65.1 bits (157), Expect = 1e-10
Identities = 39/111 (35%), Positives = 58/111 (52%)
Frame = +1
Query: 220 CPEACVCAPGGQANCSGRALPAVPGGLRMSVRILLLDHNRVRALPPGAFVGAGALLRLDL 399
CP C C+ G +C G+ L A+P L ++ + L+ N ++++PPGAF L R+DL
Sbjct: 282 CPAMCTCS-NGIVDCRGKGLTAIPANLPETMTEIRLELNGIKSIPPGAFSPYRKLRRIDL 340
Query: 400 HENGLRWVHAWAFWGLGALQQLDLSANQLEVLVPGTFVPLRALRDLSLAGN 552
N + + AF GL +L L L N++ L G F L L+ L L N
Sbjct: 341 SNNQIAEIAPDAFQGLRSLNSLVLYGNKITDLPRGVFGGLYTLQLLLLNAN 391
Score = 55.1 bits (131), Expect = 1e-07
Identities = 40/111 (36%), Positives = 54/111 (48%)
Frame = +1
Query: 220 CPEACVCAPGGQANCSGRALPAVPGGLRMSVRILLLDHNRVRALPPGAFVGAGALLRLDL 399
CP+ C C CS + L A+P G+ +V L LD N+ L PG L +DL
Sbjct: 734 CPQECACLDT-VVRCSNKHLRALPKGIPKNVTELYLDGNQF-TLVPGQLSTFKYLQLVDL 791
Query: 400 HENGLRWVHAWAFWGLGALQQLDLSANQLEVLVPGTFVPLRALRDLSLAGN 552
N + + +F + L L LS N L+ + P F LR+LR LSL GN
Sbjct: 792 SNNKISSLSNSSFTNMSQLTTLILSYNALQCIPPLAFQGLRSLRLLSLHGN 842
Score = 52.4 bits (124), Expect = 7e-07
Identities = 36/111 (32%), Positives = 51/111 (45%)
Frame = +1
Query: 220 CPEACVCAPGGQANCSGRALPAVPGGLRMSVRILLLDHNRVRALPPGAFVGAGALLRLDL 399
CP C C G +C G L A+P + + L L+ N + + F G L L L
Sbjct: 34 CPALCTCT-GTTVDCHGTGLQAIPKNIPRNTERLELNGNNITRIHKNDFAGLKQLRVLQL 92
Query: 400 HENGLRWVHAWAFWGLGALQQLDLSANQLEVLVPGTFVPLRALRDLSLAGN 552
EN + V AF + L++L L+ NQL +L F +AL L L+ N
Sbjct: 93 MENQIGAVERGAFDDMKELERLRLNRNQLHMLPELLFQNNQALSRLDLSEN 143
>ref|NP_116166.9| G-protein coupled receptor 124 precursor [Homo sapiens].
Length = 1338
Score = 64.3 bits (155), Expect = 2e-10
Identities = 41/99 (41%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Frame = +1
Query: 262 CSGRALPAVP--GGLRMSVRILLLDHNRVRALPPGAFVGAGALLRLDLHENGLRWVHAWA 435
CSG LP P G L LLL +N++ L G+F+G L +LDL N + V A
Sbjct: 68 CSGGDLPEPPEPGLLPNGTVTLLLSNNKITGLRNGSFLGLSLLEKLDLRNNIISTVQPGA 127
Query: 436 FWGLGALQQLDLSANQLEVLVPGTFVPLRALRDLSLAGN 552
F GLG L++LDLS N++ L TF L L L+++GN
Sbjct: 128 FLGLGELKRLDLSNNRIGCLTSETFQGLPRLLRLNISGN 166
Score = 50.1 bits (118), Expect = 4e-06
Identities = 29/73 (39%), Positives = 41/73 (56%)
Frame = +1
Query: 325 LDHNRVRALPPGAFVGAGALLRLDLHENGLRWVHAWAFWGLGALQQLDLSANQLEVLVPG 504
L +N + + PGAF+G G L RLDL N + + + F GL L +L++S N L PG
Sbjct: 115 LRNNIISTVQPGAFLGLGELKRLDLSNNRIGCLTSETFQGLPRLLRLNISGNIFSSLQPG 174
Query: 505 TFVPLRALRDLSL 543
F L AL+ + L
Sbjct: 175 VFDELPALKVVDL 187
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 29,325,472
Number of extensions: 721691
Number of successful extensions: 4380
Number of sequences better than 1.0e-05: 56
Number of HSP's gapped: 4083
Number of HSP's successfully gapped: 85
Length of query: 356
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 252
Effective length of database: 14,868,908
Effective search space: 3746964816
Effective search space used: 3746964816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012722
(1068 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896089.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 212 3e-52
>gb|GL896089.1| Sus scrofa unplaced genomic scaffold chrU_scaffold464
Length = 4294
Score = 212 bits (107), Expect = 3e-52
Identities = 107/107 (100%)
Strand = Plus / Minus
Query: 127 ccgccgctgtggctactgctgctgtcgccgtggccagtctggacccaggcgctcccagca 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2334 ccgccgctgtggctactgctgctgtcgccgtggccagtctggacccaggcgctcccagca 2275
Query: 187 gccaccccctccggacccccgggcgccccggactgcccggaggcgtg 233
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2274 gccaccccctccggacccccgggcgccccggactgcccggaggcgtg 2228
Score = 135 bits (68), Expect = 6e-29
Identities = 71/72 (98%)
Strand = Plus / Minus
Query: 20 atatttgtgccggcgccccggggacggacaggctccagagacgcgccggcagctggcctc 79
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2506 atatttgtgccggagccccggggacggacaggctccagagacgcgccggcagctggcctc 2447
Query: 80 caactggtgccc 91
||||||||||||
Sbjct: 2446 caactggtgccc 2435
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 14,828,547
Number of extensions: 125
Number of successful extensions: 125
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 2
Length of query: 1068
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1047
Effective length of database: 2,808,413,156
Effective search space: 2940408574332
Effective search space used: 2940408574332
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)