Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012723
(2288 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_861022.1| PREDICTED: similar to Ras association domain fa... 240 5e-63
Alignment gi|XP_850255.1| PREDICTED: similar to Ras association domain fa... 238 1e-62
Alignment gi|XP_860997.1| PREDICTED: similar to Ras association domain fa... 154 4e-37
Alignment gi|XP_861078.1| PREDICTED: similar to Ras association domain fa... 105 1e-22
Alignment gi|XP_865311.1| PREDICTED: similar to protein kinase C, eta iso... 59 3e-08
Alignment gi|XP_535429.2| PREDICTED: similar to RAS guanyl releasing prot... 56 1e-07
Alignment gi|XP_857676.1| PREDICTED: similar to RAS guanyl releasing prot... 56 1e-07
Alignment gi|XP_857637.1| PREDICTED: similar to RAS guanyl releasing prot... 56 1e-07
Alignment gi|XP_857598.1| PREDICTED: similar to RAS guanyl releasing prot... 56 1e-07
Alignment gi|XP_857560.1| PREDICTED: similar to RAS guanyl releasing prot... 56 1e-07
>ref|XP_861022.1| PREDICTED: similar to Ras association domain family 1 isoform E
isoform 3 [Canis familiaris].
Length = 355
Score = 240 bits (612), Expect = 5e-63
Identities = 109/122 (89%), Positives = 112/122 (91%)
Frame = +3
Query: 186 MSAEPELIELRELAPARCAAPVRTRLERANALRIAPGTARNNARQLVPGRGHRFQPAGPA 365
MS EPELIELREL PAR P R+RLERANALRIAPGTARN ARQLV GRGH FQPAGPA
Sbjct: 1 MSTEPELIELRELEPARRGGPGRSRLERANALRIAPGTARNPARQLVAGRGHHFQPAGPA 60
Query: 366 THTWCDLCGDFIWGVVRKGLQCAHCKFTCHYRCRALVCLDCCGPRDLGWEPALERDTNVV 545
THTWCDLCGDFIWGVVRKGLQCAHCKFTCHYRCRALVCLDCCGPRDLGWEPALERDTNV+
Sbjct: 61 THTWCDLCGDFIWGVVRKGLQCAHCKFTCHYRCRALVCLDCCGPRDLGWEPALERDTNVI 120
Query: 546 ST 551
+
Sbjct: 121 GS 122
>ref|XP_850255.1| PREDICTED: similar to Ras association domain family 1 isoform A
isoform 1 [Canis familiaris].
Length = 340
Score = 238 bits (608), Expect = 1e-62
Identities = 109/119 (91%), Positives = 110/119 (92%)
Frame = +3
Query: 186 MSAEPELIELRELAPARCAAPVRTRLERANALRIAPGTARNNARQLVPGRGHRFQPAGPA 365
MS EPELIELREL PAR P R+RLERANALRIAPGTARN ARQLV GRGH FQPAGPA
Sbjct: 1 MSTEPELIELRELEPARRGGPGRSRLERANALRIAPGTARNPARQLVAGRGHHFQPAGPA 60
Query: 366 THTWCDLCGDFIWGVVRKGLQCAHCKFTCHYRCRALVCLDCCGPRDLGWEPALERDTNV 542
THTWCDLCGDFIWGVVRKGLQCAHCKFTCHYRCRALVCLDCCGPRDLGWEPALERDTNV
Sbjct: 61 THTWCDLCGDFIWGVVRKGLQCAHCKFTCHYRCRALVCLDCCGPRDLGWEPALERDTNV 119
>ref|XP_860997.1| PREDICTED: similar to Ras association domain family 1 iosform G
isoform 2 [Canis familiaris].
Length = 152
Score = 154 bits (389), Expect = 4e-37
Identities = 74/90 (82%), Positives = 76/90 (84%)
Frame = +3
Query: 186 MSAEPELIELRELAPARCAAPVRTRLERANALRIAPGTARNNARQLVPGRGHRFQPAGPA 365
MS EPELIELREL PAR P R+RLERANALRIAPGTARN ARQLV GRGH FQPAGPA
Sbjct: 1 MSTEPELIELRELEPARRGGPGRSRLERANALRIAPGTARNPARQLVAGRGHHFQPAGPA 60
Query: 366 THTWCDLCGDFIWGVVRKGLQCAHCKFTCH 455
THTWCDLCGDFIWGVVRKGLQCA + H
Sbjct: 61 THTWCDLCGDFIWGVVRKGLQCAQQGWLLH 90
>ref|XP_861078.1| PREDICTED: similar to Ras association domain family 1 isoform C
isoform 4 [Canis familiaris].
Length = 272
Score = 105 bits (263), Expect = 1e-22
Identities = 50/51 (98%), Positives = 50/51 (98%)
Frame = +3
Query: 1113 MGEADAGTPSFEMTWSSTTSSGYCSQEDSDSELEQYFTARTSLARRPRRDQ 1265
MGE DAGTPSFEMTWSSTTSSGYCSQEDSDSELEQYFTARTSLARRPRRDQ
Sbjct: 1 MGEVDAGTPSFEMTWSSTTSSGYCSQEDSDSELEQYFTARTSLARRPRRDQ 51
>ref|XP_865311.1| PREDICTED: similar to protein kinase C, eta isoform 2 [Canis
familiaris].
Length = 685
Score = 58.5 bits (140), Expect = 3e-08
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Frame = +3
Query: 264 ERANALRIAPGTARNNARQLVPGR-----GHRFQPAGPATHTWCDLCGDFIWGVVRKGLQ 428
+R + L + T +NN ++ R H+F T+CD CG +WG++R+GLQ
Sbjct: 212 KRCHHLIVTACTCQNNINKMDSKRFGINIPHKFSIHNYKVPTFCDHCGSLLWGIMRQGLQ 271
Query: 429 CAHCKFTCHYRCRALVCLDC 488
C CK H RC+A V +C
Sbjct: 272 CKICKMNVHIRCQANVAPNC 291
>ref|XP_535429.2| PREDICTED: similar to RAS guanyl releasing protein 1 isoform 2
[Canis familiaris].
Length = 624
Score = 56.2 bits (134), Expect = 1e-07
Identities = 21/53 (39%), Positives = 30/53 (56%)
Frame = +3
Query: 330 GRGHRFQPAGPATHTWCDLCGDFIWGVVRKGLQCAHCKFTCHYRCRALVCLDC 488
G H FQ T+CD C F+WGV+++G +C C CH +C+ LV +C
Sbjct: 371 GFPHNFQETTYLKPTFCDNCAGFLWGVIKQGYRCKDCGMNCHKQCKDLVVFEC 423
>ref|XP_857676.1| PREDICTED: similar to RAS guanyl releasing protein 1 isoform 12
[Canis familiaris].
Length = 627
Score = 56.2 bits (134), Expect = 1e-07
Identities = 21/53 (39%), Positives = 30/53 (56%)
Frame = +3
Query: 330 GRGHRFQPAGPATHTWCDLCGDFIWGVVRKGLQCAHCKFTCHYRCRALVCLDC 488
G H FQ T+CD C F+WGV+++G +C C CH +C+ LV +C
Sbjct: 374 GFPHNFQETTYLKPTFCDNCAGFLWGVIKQGYRCKDCGMNCHKQCKDLVVFEC 426
>ref|XP_857637.1| PREDICTED: similar to RAS guanyl releasing protein 1 isoform 11
[Canis familiaris].
Length = 626
Score = 56.2 bits (134), Expect = 1e-07
Identities = 21/53 (39%), Positives = 30/53 (56%)
Frame = +3
Query: 330 GRGHRFQPAGPATHTWCDLCGDFIWGVVRKGLQCAHCKFTCHYRCRALVCLDC 488
G H FQ T+CD C F+WGV+++G +C C CH +C+ LV +C
Sbjct: 373 GFPHNFQETTYLKPTFCDNCAGFLWGVIKQGYRCKDCGMNCHKQCKDLVVFEC 425
>ref|XP_857598.1| PREDICTED: similar to RAS guanyl releasing protein 1 isoform 10
[Canis familiaris].
Length = 629
Score = 56.2 bits (134), Expect = 1e-07
Identities = 21/53 (39%), Positives = 30/53 (56%)
Frame = +3
Query: 330 GRGHRFQPAGPATHTWCDLCGDFIWGVVRKGLQCAHCKFTCHYRCRALVCLDC 488
G H FQ T+CD C F+WGV+++G +C C CH +C+ LV +C
Sbjct: 376 GFPHNFQETTYLKPTFCDNCAGFLWGVIKQGYRCKDCGMNCHKQCKDLVVFEC 428
>ref|XP_857560.1| PREDICTED: similar to RAS guanyl releasing protein 1 isoform 9
[Canis familiaris].
Length = 639
Score = 56.2 bits (134), Expect = 1e-07
Identities = 21/53 (39%), Positives = 30/53 (56%)
Frame = +3
Query: 330 GRGHRFQPAGPATHTWCDLCGDFIWGVVRKGLQCAHCKFTCHYRCRALVCLDC 488
G H FQ T+CD C F+WGV+++G +C C CH +C+ LV +C
Sbjct: 386 GFPHNFQETTYLKPTFCDNCAGFLWGVIKQGYRCKDCGMNCHKQCKDLVVFEC 438
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 91,305,901
Number of extensions: 2669871
Number of successful extensions: 10931
Number of sequences better than 1.0e-05: 35
Number of HSP's gapped: 10872
Number of HSP's successfully gapped: 37
Length of query: 762
Length of database: 18,874,504
Length adjustment: 111
Effective length of query: 651
Effective length of database: 15,174,208
Effective search space: 9878409408
Effective search space used: 9878409408
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012723
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012723
(2288 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068910.1| ras association domain-containing protein 1 ... 106 1e-22
Alignment gi|NP_001107232.1| ras association domain-containing protein 5 ... 60 1e-08
Alignment gi|NP_001070331.1| protein kinase C eta type [Bos taurus]. 57 9e-08
Alignment gi|NP_001137550.1| RAS guanyl-releasing protein 1 [Bos taurus]. 56 1e-07
Alignment gi|NP_001071301.1| protein kinase C zeta type [Bos taurus]. 56 2e-07
Alignment gi|NP_001192884.1| protein kinase C iota type [Bos taurus]. 55 3e-07
Alignment gi|XP_002684972.1| PREDICTED: protein kinase C, iota [Bos tauru... 55 3e-07
Alignment gi|NP_001159974.1| protein kinase C gamma type [Bos taurus]. 54 5e-07
Alignment gi|NP_001069316.1| ras guanyl-releasing protein 3 [Bos taurus]. 54 5e-07
Alignment gi|NP_001104590.1| protein kinase C epsilon type [Bos taurus]. 54 6e-07
>ref|NP_001068910.1| ras association domain-containing protein 1 [Bos taurus].
Length = 272
Score = 106 bits (264), Expect = 1e-22
Identities = 50/51 (98%), Positives = 51/51 (100%)
Frame = +3
Query: 1113 MGEADAGTPSFEMTWSSTTSSGYCSQEDSDSELEQYFTARTSLARRPRRDQ 1265
MGEADAGTPSFEMTW+STTSSGYCSQEDSDSELEQYFTARTSLARRPRRDQ
Sbjct: 1 MGEADAGTPSFEMTWNSTTSSGYCSQEDSDSELEQYFTARTSLARRPRRDQ 51
>ref|NP_001107232.1| ras association domain-containing protein 5 [Bos taurus].
Length = 423
Score = 59.7 bits (143), Expect = 1e-08
Identities = 40/99 (40%), Positives = 49/99 (49%), Gaps = 14/99 (14%)
Frame = +3
Query: 234 RCAAPVRT-RLERANALRIAPGTAR-NNARQL--------VP---GRGHRF-QPAGPATH 371
R + P R RL LR PG R + R + VP G GH F + A
Sbjct: 80 RASRPARPLRLGMQQRLRRRPGAPRPRDVRSIFEQPQDPRVPAERGEGHCFVELALRGGR 139
Query: 372 TWCDLCGDFIWGVVRKGLQCAHCKFTCHYRCRALVCLDC 488
WCDLCG +W + L CA+CKFTCH CR+L+ LDC
Sbjct: 140 GWCDLCGREVWW---RALSCANCKFTCHPECRSLIQLDC 175
>ref|NP_001070331.1| protein kinase C eta type [Bos taurus].
Length = 682
Score = 56.6 bits (135), Expect = 9e-08
Identities = 22/50 (44%), Positives = 30/50 (60%)
Frame = +3
Query: 339 HRFQPAGPATHTWCDLCGDFIWGVVRKGLQCAHCKFTCHYRCRALVCLDC 488
H+F T+CD CG +WG++R+GLQC CK H RC+A V +C
Sbjct: 245 HKFSVHNYKVPTFCDHCGSLLWGIMRQGLQCKICKMNVHIRCQANVAPNC 294
>ref|NP_001137550.1| RAS guanyl-releasing protein 1 [Bos taurus].
Length = 797
Score = 56.2 bits (134), Expect = 1e-07
Identities = 21/53 (39%), Positives = 30/53 (56%)
Frame = +3
Query: 330 GRGHRFQPAGPATHTWCDLCGDFIWGVVRKGLQCAHCKFTCHYRCRALVCLDC 488
G H FQ T+CD C F+WGV+++G +C C CH +C+ LV +C
Sbjct: 539 GFPHNFQETTYLKPTFCDNCAGFLWGVIKQGYRCKDCGMNCHKQCKDLVVFEC 591
>ref|NP_001071301.1| protein kinase C zeta type [Bos taurus].
Length = 594
Score = 55.8 bits (133), Expect = 2e-07
Identities = 28/74 (37%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +3
Query: 315 RQLVPGRGHRFQPAGPATHTWCDLCGDFIWGVVRKGLQCAHCKFTCHYRCRALVCLDCCG 494
R+L GH FQ +C C + IWG+ R+G +C HCK H RC LV L C
Sbjct: 125 RKLYRANGHLFQAKRFNRRAYCGQCSERIWGLARQGYRCIHCKLLVHKRCYVLVPLTCSR 184
Query: 495 PRDL---GWEPALE 527
D EPA++
Sbjct: 185 HMDSVMPSQEPAVD 198
>ref|NP_001192884.1| protein kinase C iota type [Bos taurus].
Length = 596
Score = 55.1 bits (131), Expect = 3e-07
Identities = 27/73 (36%), Positives = 37/73 (50%)
Frame = +3
Query: 315 RQLVPGRGHRFQPAGPATHTWCDLCGDFIWGVVRKGLQCAHCKFTCHYRCRALVCLDCCG 494
R+L GH FQ C +C D IWG+ R+G +C +CK H +C LV ++ CG
Sbjct: 133 RKLYCANGHTFQAKRFNRRAHCAICTDRIWGLGRQGYKCINCKLLVHKKCHKLVTIE-CG 191
Query: 495 PRDLGWEPALERD 533
L EP + D
Sbjct: 192 RHSLPPEPMMPMD 204
>ref|XP_002684972.1| PREDICTED: protein kinase C, iota [Bos taurus].
Length = 596
Score = 55.1 bits (131), Expect = 3e-07
Identities = 27/73 (36%), Positives = 37/73 (50%)
Frame = +3
Query: 315 RQLVPGRGHRFQPAGPATHTWCDLCGDFIWGVVRKGLQCAHCKFTCHYRCRALVCLDCCG 494
R+L GH FQ C +C D IWG+ R+G +C +CK H +C LV ++ CG
Sbjct: 133 RKLYCANGHTFQAKRFNRRAHCAICTDRIWGLGRQGYKCINCKLLVHKKCHKLVTIE-CG 191
Query: 495 PRDLGWEPALERD 533
L EP + D
Sbjct: 192 RHSLPPEPMMPMD 204
>ref|NP_001159974.1| protein kinase C gamma type [Bos taurus].
Length = 697
Score = 54.3 bits (129), Expect = 5e-07
Identities = 22/54 (40%), Positives = 29/54 (53%)
Frame = +3
Query: 333 RGHRFQPAGPATHTWCDLCGDFIWGVVRKGLQCAHCKFTCHYRCRALVCLDCCG 494
+ H+F T+C C DFIWG+ ++GLQC C F H RC V +C G
Sbjct: 34 KSHKFTARFFKQPTFCSHCTDFIWGIGKQGLQCQVCSFVVHRRCHEFVTFECPG 87
>ref|NP_001069316.1| ras guanyl-releasing protein 3 [Bos taurus].
Length = 691
Score = 54.3 bits (129), Expect = 5e-07
Identities = 20/54 (37%), Positives = 31/54 (57%)
Frame = +3
Query: 327 PGRGHRFQPAGPATHTWCDLCGDFIWGVVRKGLQCAHCKFTCHYRCRALVCLDC 488
PG H FQ T+C+ C F+WG++++G +C C CH +C+ L+ L C
Sbjct: 490 PGFVHNFQEMTYLKPTFCEHCAGFLWGIIKQGYKCKDCGANCHKQCKDLLVLAC 543
>ref|NP_001104590.1| protein kinase C epsilon type [Bos taurus].
Length = 737
Score = 53.9 bits (128), Expect = 6e-07
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Frame = +3
Query: 183 DMSAEPELIELRELAPARCAAPVRTRLERANALRIAP----GTARNNARQLVPGRGHRFQ 350
D+ E + + +L+ + AP + ER R+ P G R Q+ GH+F
Sbjct: 118 DLEPEGRVYVIIDLSGSSGEAP-KDNEERVFRERMRPRKRQGAVRRRVHQV---NGHKFM 173
Query: 351 PAGPATHTWCDLCGDFIWGVV-RKGLQCAHCKFTCHYRCRALVCLDCCG 494
T+C C DFIWGV+ ++G QC C H RC L+ C G
Sbjct: 174 ATYLRQPTYCSHCRDFIWGVIGKQGYQCQVCTCVVHKRCHELIITKCAG 222
Score = 52.4 bits (124), Expect = 2e-06
Identities = 21/50 (42%), Positives = 28/50 (56%)
Frame = +3
Query: 339 HRFQPAGPATHTWCDLCGDFIWGVVRKGLQCAHCKFTCHYRCRALVCLDC 488
H+F T+CD CG +WG++R+GLQC CK H RC V +C
Sbjct: 243 HKFGIHNYKVPTFCDHCGSLLWGLLRQGLQCKVCKMNVHRRCETNVAPNC 292
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 87,732,145
Number of extensions: 2609771
Number of successful extensions: 10464
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 10394
Number of HSP's successfully gapped: 25
Length of query: 762
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 652
Effective length of database: 14,041,694
Effective search space: 9155184488
Effective search space used: 9155184488
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012723
(2288 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003132273.1| PREDICTED: ras association domain-containing... 256 4e-68
Alignment gi|XP_003358497.1| PREDICTED: ras association domain-containing... 107 3e-23
Alignment gi|XP_003121898.1| PREDICTED: protein kinase C eta type isoform... 60 5e-09
Alignment gi|XP_001924883.2| PREDICTED: protein kinase C eta type isoform... 57 6e-08
Alignment gi|XP_003353457.1| PREDICTED: RAS guanyl-releasing protein 1 is... 56 8e-08
Alignment gi|XP_003121651.1| PREDICTED: RAS guanyl-releasing protein 1 is... 56 8e-08
Alignment gi|XP_003132574.2| PREDICTED: protein kinase C iota type [Sus s... 55 2e-07
Alignment gi|XP_003356089.1| PREDICTED: protein kinase C gamma type-like ... 54 3e-07
Alignment gi|XP_003125298.2| PREDICTED: ras guanyl-releasing protein 3 is... 54 3e-07
Alignment gi|XP_003125219.2| PREDICTED: protein kinase C epsilon type-lik... 54 4e-07
>ref|XP_003132273.1| PREDICTED: ras association domain-containing protein 1 isoform 1
[Sus scrofa].
Length = 344
Score = 256 bits (654), Expect = 4e-68
Identities = 119/123 (96%), Positives = 119/123 (96%), Gaps = 4/123 (3%)
Frame = +3
Query: 186 MSAEPELIELRELAPARCAAPVRTRLERANALRIAPGTARNNARQLVPGRGHRFQPAGPA 365
MSAEPELIELRELAPARCAAPVRTRLERANALRIAPGTARNNARQLVPGRGHRFQPAGPA
Sbjct: 1 MSAEPELIELRELAPARCAAPVRTRLERANALRIAPGTARNNARQLVPGRGHRFQPAGPA 60
Query: 366 THTWCDLCGDFIWGVVRKGLQCAH----CKFTCHYRCRALVCLDCCGPRDLGWEPALERD 533
THTWCDLCGDFIWGVVRKGLQCAH CKFTCHYRCRALVCLDCCGPRDLGWEPALERD
Sbjct: 61 THTWCDLCGDFIWGVVRKGLQCAHLSADCKFTCHYRCRALVCLDCCGPRDLGWEPALERD 120
Query: 534 TNV 542
TNV
Sbjct: 121 TNV 123
>ref|XP_003358497.1| PREDICTED: ras association domain-containing protein 1 isoform 2 [Sus
scrofa].
Length = 272
Score = 107 bits (267), Expect = 3e-23
Identities = 51/51 (100%), Positives = 51/51 (100%)
Frame = +3
Query: 1113 MGEADAGTPSFEMTWSSTTSSGYCSQEDSDSELEQYFTARTSLARRPRRDQ 1265
MGEADAGTPSFEMTWSSTTSSGYCSQEDSDSELEQYFTARTSLARRPRRDQ
Sbjct: 1 MGEADAGTPSFEMTWSSTTSSGYCSQEDSDSELEQYFTARTSLARRPRRDQ 51
>ref|XP_003121898.1| PREDICTED: protein kinase C eta type isoform 2 [Sus scrofa].
Length = 679
Score = 60.1 bits (144), Expect = 5e-09
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Frame = +3
Query: 264 ERANALRIAPGTARNNARQLVPGR-----GHRFQPAGPATHTWCDLCGDFIWGVVRKGLQ 428
+R + L + T +NN ++ R H+F T+CD CG +WG++R+GLQ
Sbjct: 213 KRCHHLIVTACTCQNNINKIAEQRFGINIPHKFSVHNYKVPTFCDHCGSLLWGIMRQGLQ 272
Query: 429 CAHCKFTCHYRCRALVCLDC 488
C CK H RC+A V +C
Sbjct: 273 CKICKMNVHIRCQANVAPNC 292
>ref|XP_001924883.2| PREDICTED: protein kinase C eta type isoform 1 [Sus scrofa].
Length = 682
Score = 56.6 bits (135), Expect = 6e-08
Identities = 22/50 (44%), Positives = 30/50 (60%)
Frame = +3
Query: 339 HRFQPAGPATHTWCDLCGDFIWGVVRKGLQCAHCKFTCHYRCRALVCLDC 488
H+F T+CD CG +WG++R+GLQC CK H RC+A V +C
Sbjct: 246 HKFSVHNYKVPTFCDHCGSLLWGIMRQGLQCKICKMNVHIRCQANVAPNC 295
>ref|XP_003353457.1| PREDICTED: RAS guanyl-releasing protein 1 isoform 2 [Sus scrofa].
Length = 762
Score = 56.2 bits (134), Expect = 8e-08
Identities = 21/53 (39%), Positives = 30/53 (56%)
Frame = +3
Query: 330 GRGHRFQPAGPATHTWCDLCGDFIWGVVRKGLQCAHCKFTCHYRCRALVCLDC 488
G H FQ T+CD C F+WGV+++G +C C CH +C+ LV +C
Sbjct: 504 GFPHNFQETTYLKPTFCDNCAGFLWGVIKQGYRCKDCGMNCHKQCKDLVVFEC 556
>ref|XP_003121651.1| PREDICTED: RAS guanyl-releasing protein 1 isoform 1 [Sus scrofa].
Length = 797
Score = 56.2 bits (134), Expect = 8e-08
Identities = 21/53 (39%), Positives = 30/53 (56%)
Frame = +3
Query: 330 GRGHRFQPAGPATHTWCDLCGDFIWGVVRKGLQCAHCKFTCHYRCRALVCLDC 488
G H FQ T+CD C F+WGV+++G +C C CH +C+ LV +C
Sbjct: 539 GFPHNFQETTYLKPTFCDNCAGFLWGVIKQGYRCKDCGMNCHKQCKDLVVFEC 591
>ref|XP_003132574.2| PREDICTED: protein kinase C iota type [Sus scrofa].
Length = 544
Score = 55.1 bits (131), Expect = 2e-07
Identities = 27/73 (36%), Positives = 37/73 (50%)
Frame = +3
Query: 315 RQLVPGRGHRFQPAGPATHTWCDLCGDFIWGVVRKGLQCAHCKFTCHYRCRALVCLDCCG 494
R+L GH FQ C +C D IWG+ R+G +C +CK H +C LV ++ CG
Sbjct: 81 RKLYCANGHTFQAKRFNRRAHCAICTDRIWGLGRQGYKCINCKLLVHKKCHKLVTIE-CG 139
Query: 495 PRDLGWEPALERD 533
L EP + D
Sbjct: 140 RHSLPPEPMMPMD 152
>ref|XP_003356089.1| PREDICTED: protein kinase C gamma type-like [Sus scrofa].
Length = 697
Score = 54.3 bits (129), Expect = 3e-07
Identities = 22/54 (40%), Positives = 29/54 (53%)
Frame = +3
Query: 333 RGHRFQPAGPATHTWCDLCGDFIWGVVRKGLQCAHCKFTCHYRCRALVCLDCCG 494
+ H+F T+C C DFIWG+ ++GLQC C F H RC V +C G
Sbjct: 34 KSHKFTARFFKQPTFCSHCTDFIWGIGKQGLQCQVCSFVVHRRCHEFVTFECPG 87
>ref|XP_003125298.2| PREDICTED: ras guanyl-releasing protein 3 isoform 1 [Sus scrofa].
Length = 478
Score = 54.3 bits (129), Expect = 3e-07
Identities = 20/54 (37%), Positives = 31/54 (57%)
Frame = +3
Query: 327 PGRGHRFQPAGPATHTWCDLCGDFIWGVVRKGLQCAHCKFTCHYRCRALVCLDC 488
PG H FQ T+C+ C F+WG++++G +C C CH +C+ L+ L C
Sbjct: 277 PGFVHNFQEMTYLKPTFCEHCAGFLWGIIKQGYKCKDCGANCHKQCKDLLVLAC 330
>ref|XP_003125219.2| PREDICTED: protein kinase C epsilon type-like [Sus scrofa].
Length = 819
Score = 53.9 bits (128), Expect = 4e-07
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Frame = +3
Query: 183 DMSAEPELIELRELAPARCAAPVRTRLERANALRIAP----GTARNNARQLVPGRGHRFQ 350
D+ E + + +L+ + AP + ER R+ P G R Q+ GH+F
Sbjct: 200 DLEPEGRVYVIIDLSGSSGEAP-KDNEERVFRERMRPRKRQGAVRRRVHQV---NGHKFM 255
Query: 351 PAGPATHTWCDLCGDFIWGVV-RKGLQCAHCKFTCHYRCRALVCLDCCG 494
T+C C DFIWGV+ ++G QC C H RC L+ C G
Sbjct: 256 ATYLRQPTYCSHCRDFIWGVIGKQGYQCQVCTCVVHKRCHELIITKCAG 304
Score = 52.4 bits (124), Expect = 1e-06
Identities = 21/50 (42%), Positives = 28/50 (56%)
Frame = +3
Query: 339 HRFQPAGPATHTWCDLCGDFIWGVVRKGLQCAHCKFTCHYRCRALVCLDC 488
H+F T+CD CG +WG++R+GLQC CK H RC V +C
Sbjct: 325 HKFGIHNYKVPTFCDHCGSLLWGLLRQGLQCKVCKMNVHRRCETNVAPNC 374
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 56,846,341
Number of extensions: 1708235
Number of successful extensions: 6855
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 6797
Number of HSP's successfully gapped: 17
Length of query: 762
Length of database: 11,343,932
Length adjustment: 107
Effective length of query: 655
Effective length of database: 8,679,953
Effective search space: 5685369215
Effective search space used: 5685369215
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012723
(2288 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230677.1| ras association domain-containing protein 1 ... 231 1e-60
Alignment gi|NP_062687.1| ras association domain-containing protein 1 iso... 96 2e-19
Alignment gi|NP_061220.2| ras association domain-containing protein 5 [Mu... 65 2e-10
Alignment gi|NP_032882.2| protein kinase C eta type [Mus musculus]. 57 8e-08
Alignment gi|NP_035376.1| RAS guanyl-releasing protein 1 [Mus musculus]. 56 1e-07
Alignment gi|NP_032883.2| protein kinase C iota type [Mus musculus]. 55 2e-07
Alignment gi|NP_001159965.1| RAS, guanyl releasing protein 3 [Mus musculu... 55 2e-07
Alignment gi|NP_997129.1| RAS, guanyl releasing protein 3 [Mus musculus]. 55 2e-07
Alignment gi|NP_035232.1| protein kinase C gamma type [Mus musculus]. 54 4e-07
Alignment gi|NP_035234.1| protein kinase C epsilon type [Mus musculus]. 54 4e-07
>ref|NP_001230677.1| ras association domain-containing protein 1 isoform 1 [Mus
musculus].
Length = 340
Score = 231 bits (590), Expect = 1e-60
Identities = 105/119 (88%), Positives = 109/119 (91%)
Frame = +3
Query: 186 MSAEPELIELRELAPARCAAPVRTRLERANALRIAPGTARNNARQLVPGRGHRFQPAGPA 365
MSAEPELIELRELAP+ P RTRLERANALRIAPGT RN ++Q VPGRGHRFQPAGP
Sbjct: 1 MSAEPELIELRELAPSGRIGPGRTRLERANALRIAPGTTRNPSQQHVPGRGHRFQPAGPT 60
Query: 366 THTWCDLCGDFIWGVVRKGLQCAHCKFTCHYRCRALVCLDCCGPRDLGWEPALERDTNV 542
THTWCDLCGDFIWGVVRKGLQCAHCKFTCHYRCRALVCLDCCGPRDLGW+ ALERDTNV
Sbjct: 61 THTWCDLCGDFIWGVVRKGLQCAHCKFTCHYRCRALVCLDCCGPRDLGWDSALERDTNV 119
>ref|NP_062687.1| ras association domain-containing protein 1 isoform 2 [Mus musculus].
Length = 270
Score = 95.5 bits (236), Expect = 2e-19
Identities = 47/51 (92%), Positives = 48/51 (94%)
Frame = +3
Query: 1113 MGEADAGTPSFEMTWSSTTSSGYCSQEDSDSELEQYFTARTSLARRPRRDQ 1265
MGEA+ TPSFEMTWSSTTSSGYCSQEDSDSELEQYFTARTSL RRPRRDQ
Sbjct: 1 MGEAE--TPSFEMTWSSTTSSGYCSQEDSDSELEQYFTARTSLVRRPRRDQ 49
>ref|NP_061220.2| ras association domain-containing protein 5 [Mus musculus].
Length = 413
Score = 65.1 bits (157), Expect = 2e-10
Identities = 49/115 (42%), Positives = 60/115 (52%), Gaps = 16/115 (13%)
Frame = +3
Query: 234 RCAAPVRTRLERANALRIAPGTAR-----------NNARQLVP-GRGHRFQP----AGPA 365
R A PVR L+ LR+ PG+ R + R L G GHRF GP
Sbjct: 73 RHARPVRPGLQPR--LRLRPGSHRPRDVRSIFEQPQDPRVLAERGEGHRFVELALRGGPG 130
Query: 366 THTWCDLCGDFIWGVVRKGLQCAHCKFTCHYRCRALVCLDCCGPRDLGWEPALER 530
WCDLCG V+R+ L+CA+CKFTCH CR+L+ LDC R G PAL+R
Sbjct: 131 ---WCDLCGR---EVLRQALRCANCKFTCHSECRSLIQLDC---RQKG-GPALDR 175
>ref|NP_032882.2| protein kinase C eta type [Mus musculus].
Length = 683
Score = 56.6 bits (135), Expect = 8e-08
Identities = 22/50 (44%), Positives = 30/50 (60%)
Frame = +3
Query: 339 HRFQPAGPATHTWCDLCGDFIWGVVRKGLQCAHCKFTCHYRCRALVCLDC 488
H+F T+CD CG +WG++R+GLQC CK H RC+A V +C
Sbjct: 246 HKFNVHNYKVPTFCDHCGSLLWGIMRQGLQCKICKMNVHIRCQANVAPNC 295
>ref|NP_035376.1| RAS guanyl-releasing protein 1 [Mus musculus].
Length = 795
Score = 56.2 bits (134), Expect = 1e-07
Identities = 21/53 (39%), Positives = 30/53 (56%)
Frame = +3
Query: 330 GRGHRFQPAGPATHTWCDLCGDFIWGVVRKGLQCAHCKFTCHYRCRALVCLDC 488
G H FQ T+CD C F+WGV+++G +C C CH +C+ LV +C
Sbjct: 539 GFPHNFQETTYLKPTFCDNCAGFLWGVIKQGYRCKDCGMNCHKQCKDLVVFEC 591
>ref|NP_032883.2| protein kinase C iota type [Mus musculus].
Length = 595
Score = 55.1 bits (131), Expect = 2e-07
Identities = 27/73 (36%), Positives = 37/73 (50%)
Frame = +3
Query: 315 RQLVPGRGHRFQPAGPATHTWCDLCGDFIWGVVRKGLQCAHCKFTCHYRCRALVCLDCCG 494
R+L GH FQ C +C D IWG+ R+G +C +CK H +C LV ++ CG
Sbjct: 133 RKLYCANGHTFQAKRFNRRAHCAICTDRIWGLGRQGYKCINCKLLVHKKCHKLVTIE-CG 191
Query: 495 PRDLGWEPALERD 533
L EP + D
Sbjct: 192 RHSLPPEPMMPMD 204
>ref|NP_001159965.1| RAS, guanyl releasing protein 3 [Mus musculus].
Length = 691
Score = 55.1 bits (131), Expect = 2e-07
Identities = 24/66 (36%), Positives = 36/66 (54%)
Frame = +3
Query: 327 PGRGHRFQPAGPATHTWCDLCGDFIWGVVRKGLQCAHCKFTCHYRCRALVCLDCCGPRDL 506
PG H FQ T+C+ C F+WG++++G +C C CH +C+ L+ L C R L
Sbjct: 491 PGFIHNFQEMNYLKPTFCEHCAGFLWGIIKQGYKCKDCGANCHKQCKDLLVLAC---RRL 547
Query: 507 GWEPAL 524
P+L
Sbjct: 548 ARAPSL 553
>ref|NP_997129.1| RAS, guanyl releasing protein 3 [Mus musculus].
Length = 691
Score = 55.1 bits (131), Expect = 2e-07
Identities = 24/66 (36%), Positives = 36/66 (54%)
Frame = +3
Query: 327 PGRGHRFQPAGPATHTWCDLCGDFIWGVVRKGLQCAHCKFTCHYRCRALVCLDCCGPRDL 506
PG H FQ T+C+ C F+WG++++G +C C CH +C+ L+ L C R L
Sbjct: 491 PGFIHNFQEMNYLKPTFCEHCAGFLWGIIKQGYKCKDCGANCHKQCKDLLVLAC---RRL 547
Query: 507 GWEPAL 524
P+L
Sbjct: 548 ARAPSL 553
>ref|NP_035232.1| protein kinase C gamma type [Mus musculus].
Length = 697
Score = 54.3 bits (129), Expect = 4e-07
Identities = 22/54 (40%), Positives = 29/54 (53%)
Frame = +3
Query: 333 RGHRFQPAGPATHTWCDLCGDFIWGVVRKGLQCAHCKFTCHYRCRALVCLDCCG 494
+ H+F T+C C DFIWG+ ++GLQC C F H RC V +C G
Sbjct: 34 KSHKFTARFFKQPTFCSHCTDFIWGIGKQGLQCQVCSFVVHRRCHEFVTFECPG 87
>ref|NP_035234.1| protein kinase C epsilon type [Mus musculus].
Length = 737
Score = 54.3 bits (129), Expect = 4e-07
Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Frame = +3
Query: 183 DMSAEPELIELRELAPARCAAPVRTRLERANALRIAP----GTARNNARQLVPGRGHRFQ 350
D+ E ++ + +L+ + AP + ER R+ P G R Q+ GH+F
Sbjct: 118 DLEPEGKVYVIIDLSGSSGEAP-KDNEERVFRERMRPRKRQGAVRRRVHQV---NGHKFM 173
Query: 351 PAGPATHTWCDLCGDFIWGVV-RKGLQCAHCKFTCHYRCRALVCLDCCG 494
T+C C DFIWGV+ ++G QC C H RC L+ C G
Sbjct: 174 ATYLRQPTYCSHCRDFIWGVIGKQGYQCQVCTCVVHKRCHELIITKCAG 222
Score = 52.4 bits (124), Expect = 2e-06
Identities = 21/50 (42%), Positives = 28/50 (56%)
Frame = +3
Query: 339 HRFQPAGPATHTWCDLCGDFIWGVVRKGLQCAHCKFTCHYRCRALVCLDC 488
H+F T+CD CG +WG++R+GLQC CK H RC V +C
Sbjct: 243 HKFGIHNYKVPTFCDHCGSLLWGLLRQGLQCKVCKMNVHRRCETNVAPNC 292
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 75,150,377
Number of extensions: 2142611
Number of successful extensions: 8322
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 8264
Number of HSP's successfully gapped: 25
Length of query: 762
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 653
Effective length of database: 12,343,635
Effective search space: 8060393655
Effective search space used: 8060393655
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012723
(2288 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_009113.3| ras association domain-containing protein 1 iso... 233 4e-61
Alignment gi|NP_733832.1| ras association domain-containing protein 1 iso... 224 2e-58
Alignment gi|NP_733831.1| ras association domain-containing protein 1 iso... 97 8e-20
Alignment gi|NP_872605.1| ras association domain-containing protein 5 iso... 62 2e-09
Alignment gi|NP_872604.1| ras association domain-containing protein 5 iso... 62 2e-09
Alignment gi|NP_002731.4| protein kinase C iota type [Homo sapiens]. 56 1e-07
Alignment gi|NP_006246.2| protein kinase C eta type [Homo sapiens]. 56 1e-07
Alignment gi|NP_001122074.1| RAS guanyl-releasing protein 1 isoform b [Ho... 56 1e-07
Alignment gi|NP_005730.2| RAS guanyl-releasing protein 1 isoform a [Homo ... 56 1e-07
Alignment gi|NP_001132960.1| ras guanyl-releasing protein 3 isoform 1 [Ho... 55 2e-07
>ref|NP_009113.3| ras association domain-containing protein 1 isoform A [Homo
sapiens].
Length = 340
Score = 233 bits (595), Expect = 4e-61
Identities = 108/119 (90%), Positives = 109/119 (91%)
Frame = +3
Query: 186 MSAEPELIELRELAPARCAAPVRTRLERANALRIAPGTARNNARQLVPGRGHRFQPAGPA 365
MS EPELIELRELAPA A RTRLERANALRIA GTA N RQLVPGRGHRFQPAGPA
Sbjct: 1 MSGEPELIELRELAPAGRAGKGRTRLERANALRIARGTACNPTRQLVPGRGHRFQPAGPA 60
Query: 366 THTWCDLCGDFIWGVVRKGLQCAHCKFTCHYRCRALVCLDCCGPRDLGWEPALERDTNV 542
THTWCDLCGDFIWGVVRKGLQCAHCKFTCHYRCRALVCLDCCGPRDLGWEPA+ERDTNV
Sbjct: 61 THTWCDLCGDFIWGVVRKGLQCAHCKFTCHYRCRALVCLDCCGPRDLGWEPAVERDTNV 119
>ref|NP_733832.1| ras association domain-containing protein 1 isoform D [Homo
sapiens].
Length = 344
Score = 224 bits (572), Expect = 2e-58
Identities = 107/123 (86%), Positives = 108/123 (87%), Gaps = 4/123 (3%)
Frame = +3
Query: 186 MSAEPELIELRELAPARCAAPVRTRLERANALRIAPGTARNNARQLVPGRGHRFQPAGPA 365
MS EPELIELRELAPA A RTRLERANALRIA GTA N RQLVPGRGHRFQPAGPA
Sbjct: 1 MSGEPELIELRELAPAGRAGKGRTRLERANALRIARGTACNPTRQLVPGRGHRFQPAGPA 60
Query: 366 THTWCDLCGDFIWGVVRKGLQCAH----CKFTCHYRCRALVCLDCCGPRDLGWEPALERD 533
THTWCDLCGDFIWGVVRKGLQCA CKFTCHYRCRALVCLDCCGPRDLGWEPA+ERD
Sbjct: 61 THTWCDLCGDFIWGVVRKGLQCARLSADCKFTCHYRCRALVCLDCCGPRDLGWEPAVERD 120
Query: 534 TNV 542
TNV
Sbjct: 121 TNV 123
>ref|NP_733831.1| ras association domain-containing protein 1 isoform C [Homo sapiens].
Length = 270
Score = 96.7 bits (239), Expect = 8e-20
Identities = 48/51 (94%), Positives = 49/51 (96%)
Frame = +3
Query: 1113 MGEADAGTPSFEMTWSSTTSSGYCSQEDSDSELEQYFTARTSLARRPRRDQ 1265
MGEA+A PSFEMTWSSTTSSGYCSQEDSDSELEQYFTARTSLARRPRRDQ
Sbjct: 1 MGEAEA--PSFEMTWSSTTSSGYCSQEDSDSELEQYFTARTSLARRPRRDQ 49
>ref|NP_872605.1| ras association domain-containing protein 5 isoform B [Homo
sapiens].
Length = 336
Score = 62.4 bits (150), Expect = 2e-09
Identities = 46/125 (36%), Positives = 60/125 (48%), Gaps = 16/125 (12%)
Frame = +3
Query: 231 ARCAAPVRTRLERANALRIAPGTAR-NNARQL--------VP---GRGHRFQ----PAGP 362
+R A P+R L++ LR PG R + R + VP G GH F P GP
Sbjct: 77 SRPARPLRPGLQQR--LRRRPGAPRPRDVRSIFEQPQDPRVPAERGEGHCFAELVLPGGP 134
Query: 363 ATHTWCDLCGDFIWGVVRKGLQCAHCKFTCHYRCRALVCLDCCGPRDLGWEPALERDTNV 542
WCDLCG V+R+ L+C +CKFTCH CR+L+ LDC L + T
Sbjct: 135 G---WCDLCGR---EVLRQALRCTNCKFTCHPECRSLIQLDCSQQEGLSRDRPSPESTLT 188
Query: 543 VSTGQ 557
V+ Q
Sbjct: 189 VTFSQ 193
>ref|NP_872604.1| ras association domain-containing protein 5 isoform A [Homo
sapiens].
Length = 418
Score = 62.4 bits (150), Expect = 2e-09
Identities = 46/125 (36%), Positives = 60/125 (48%), Gaps = 16/125 (12%)
Frame = +3
Query: 231 ARCAAPVRTRLERANALRIAPGTAR-NNARQL--------VP---GRGHRFQ----PAGP 362
+R A P+R L++ LR PG R + R + VP G GH F P GP
Sbjct: 77 SRPARPLRPGLQQR--LRRRPGAPRPRDVRSIFEQPQDPRVPAERGEGHCFAELVLPGGP 134
Query: 363 ATHTWCDLCGDFIWGVVRKGLQCAHCKFTCHYRCRALVCLDCCGPRDLGWEPALERDTNV 542
WCDLCG V+R+ L+C +CKFTCH CR+L+ LDC L + T
Sbjct: 135 G---WCDLCGR---EVLRQALRCTNCKFTCHPECRSLIQLDCSQQEGLSRDRPSPESTLT 188
Query: 543 VSTGQ 557
V+ Q
Sbjct: 189 VTFSQ 193
>ref|NP_002731.4| protein kinase C iota type [Homo sapiens].
Length = 596
Score = 56.2 bits (134), Expect = 1e-07
Identities = 27/73 (36%), Positives = 37/73 (50%)
Frame = +3
Query: 315 RQLVPGRGHRFQPAGPATHTWCDLCGDFIWGVVRKGLQCAHCKFTCHYRCRALVCLDCCG 494
R+L GH FQ C +C D IWG+ R+G +C +CK H +C LV ++ CG
Sbjct: 133 RKLYCANGHTFQAKRFNRRAHCAICTDRIWGLGRQGYKCINCKLLVHKKCHKLVTIE-CG 191
Query: 495 PRDLGWEPALERD 533
L EP + D
Sbjct: 192 RHSLPQEPVMPMD 204
>ref|NP_006246.2| protein kinase C eta type [Homo sapiens].
Length = 683
Score = 56.2 bits (134), Expect = 1e-07
Identities = 22/50 (44%), Positives = 30/50 (60%)
Frame = +3
Query: 339 HRFQPAGPATHTWCDLCGDFIWGVVRKGLQCAHCKFTCHYRCRALVCLDC 488
H+F T+CD CG +WG++R+GLQC CK H RC+A V +C
Sbjct: 246 HKFSIHNYKVPTFCDHCGSLLWGIMRQGLQCKICKMNVHIRCQANVAPNC 295
>ref|NP_001122074.1| RAS guanyl-releasing protein 1 isoform b [Homo sapiens].
Length = 762
Score = 56.2 bits (134), Expect = 1e-07
Identities = 21/53 (39%), Positives = 30/53 (56%)
Frame = +3
Query: 330 GRGHRFQPAGPATHTWCDLCGDFIWGVVRKGLQCAHCKFTCHYRCRALVCLDC 488
G H FQ T+CD C F+WGV+++G +C C CH +C+ LV +C
Sbjct: 504 GFPHNFQETTYLKPTFCDNCAGFLWGVIKQGYRCKDCGMNCHKQCKDLVVFEC 556
>ref|NP_005730.2| RAS guanyl-releasing protein 1 isoform a [Homo sapiens].
Length = 797
Score = 56.2 bits (134), Expect = 1e-07
Identities = 21/53 (39%), Positives = 30/53 (56%)
Frame = +3
Query: 330 GRGHRFQPAGPATHTWCDLCGDFIWGVVRKGLQCAHCKFTCHYRCRALVCLDC 488
G H FQ T+CD C F+WGV+++G +C C CH +C+ LV +C
Sbjct: 539 GFPHNFQETTYLKPTFCDNCAGFLWGVIKQGYRCKDCGMNCHKQCKDLVVFEC 591
>ref|NP_001132960.1| ras guanyl-releasing protein 3 isoform 1 [Homo sapiens].
Length = 690
Score = 55.5 bits (132), Expect = 2e-07
Identities = 28/80 (35%), Positives = 41/80 (51%)
Frame = +3
Query: 327 PGRGHRFQPAGPATHTWCDLCGDFIWGVVRKGLQCAHCKFTCHYRCRALVCLDCCGPRDL 506
PG H FQ T+C+ C F+WG++++G +C C CH +C+ L+ L C R
Sbjct: 491 PGFIHNFQEMTYLKPTFCEHCAGFLWGIIKQGYKCKDCGANCHKQCKDLLVLAC---RRF 547
Query: 507 GWEPALERDTNVVSTGQGSL 566
P+L S+G GSL
Sbjct: 548 ARAPSL-------SSGHGSL 560
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 89,340,315
Number of extensions: 2605775
Number of successful extensions: 10643
Number of sequences better than 1.0e-05: 33
Number of HSP's gapped: 10536
Number of HSP's successfully gapped: 35
Length of query: 762
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 652
Effective length of database: 14,671,124
Effective search space: 9565572848
Effective search space used: 9565572848
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012723
(2288 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 3650 0.0
>Sscrofa_Chr13
|| Length = 218635234
Score = 3650 bits (1841), Expect = 0.0
Identities = 1850/1853 (99%)
Strand = Plus / Minus
Query: 436 attgcaagttcacctgccactaccgttgccgcgcgcttgtctgcctagactgctgcgggc 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36001240 attgcaagttcacctgccactaccgttgccgcgcgcttgtctgcctagactgctgcgggc 36001181
Query: 496 cccgggacctgggctgggaaccggcgctggaacgggatacgaacgtggtgagcacggggc 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36001180 cccgggacctgggctgggaaccggcgctggaacgggatacgaacgtggtgagcacggggc 36001121
Query: 556 aggggagtttatgggcaaggcagggaggaacagacaagcggggcacattgcaggcgttcc 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36001120 aggggagtttatgggcaaggcagggaggaacagacaagcggggcacattgcaggcgttcc 36001061
Query: 616 ttaaagccgtccggcgctacgcgcaaggaacgttgtaacttctccgtagcagagaagcta 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36001060 ttaaagccgtccggcgctacgcgcaaggaacgttgtaacttctccgtagcagagaagcta 36001001
Query: 676 actctgtgcgaggactcgaaggggtacaccgggtgttgactaggcgctgtccaccaggag 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36001000 actctgtgcgaggactcgaaggggtacaccgggtgttgactaggcgctgtccaccaggag 36000941
Query: 736 ccgcccaggctccgcgcaagcgcaatttccacacctttccacatctgcatccggtcttgt 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36000940 ccgcccaggctccgcgcaagcgcaatttccacacctttccacatctgcatccggtcttgt 36000881
Query: 796 ggccacgctggtgcacatgcgcacactctcggactagttcctggtgggaagtgaggcctg 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36000880 ggccacgctggtgcacatgcgcacactctcggactagttcctggtgggaagtgaggcctg 36000821
Query: 856 tgaggcagagttgagctgcgctgcactggcgaagatatcgctcctggaggcgtggcctct 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36000820 tgaggcagagttgagctgcgctgcactggcgaagatatcgctcctggaggcgtggcctct 36000761
Query: 916 gtggtcccgcccttcgacattcctcctccaatgacatgagagctagatcctggctgtcta 975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36000760 gtggtcccgcccttcgacattcctcctccaatgacatgagagctagatcctggctgtcta 36000701
Query: 976 cgtttcagtgttaacggttgcggtgcggatacaggttccggcgcacgcgcacacatacat 1035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36000700 cgtttcagtgttaacggttgcggtgcggatacaggttccggcgcacgcgcacacatacat 36000641
Query: 1036 gggcgcgcgtgcgcacacgcgcctggggcggtggttggaggctaccgggacacgggggct 1095
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36000640 gggcgcgcgtgcgcacacgcgcctggggcggtggttggaggctaccgggacacgggggct 36000581
Query: 1096 ggctgtcgggcgcggcgatgggtgaggcggacgcggggacgccttctttcgagatgacct 1155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36000580 ggctgtcgggcgcggcgatgggtgaggcggacgcggggacgccttctttcgagatgacct 36000521
Query: 1156 ggagcagcacgacaagcagtggctactgcagccaggaggactcggactcagagctcgagc 1215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36000520 ggagcagcacgacaagcagtggctactgcagccaggaggactcggactcagagctcgagc 36000461
Query: 1216 agtacttcaccgcgcgtacctcgctggctcggaggccgcgccgggaccaggtgggggcca 1275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36000460 agtacttcaccgcgcgtacctcgctggctcggaggccgcgccgggaccaggtgggggcca 36000401
Query: 1276 ggggttgtaggaggcgggctgcgggcgggcgctgggacctcgcccttccccggtaagttg 1335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36000400 ggggttgtaggaggcgggctgcgggcgggcgctgggacctcgcccttccccggtaagttg 36000341
Query: 1336 aggtgtcggcactttgtgggcagctccgccctcccgtcaacgtggatccgggattcgacc 1395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36000340 aggtgtcggcactttgtgggcagctccgccctcccgtcaacgtggatccgggattcgacc 36000281
Query: 1396 ctggccagccctctgaaccgtgtgttgggctttcagcgtgttggtaccagaggtggcagc 1455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36000280 ctggccagccctctgaaccgtgtgttgggctttcagcgtgttggtaccagaggtggcagc 36000221
Query: 1456 taagtagtttggggtagacgggggacgggcgttacccacccattactgaggctcactgcg 1515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36000220 taagtagtttggggtagacgggggacgggcgttacccacccattactgaggctcactgcg 36000161
Query: 1516 cagtctggactaacaccttgatttccgcgggctggcgctcctcccatttcccaccctcgc 1575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36000160 cagtctggactaacaccttgatttccgcgggctggcgctcctcccatttcccaccctcgc 36000101
Query: 1576 tctggggatcgcccggaattgagaagtgtatttgggagaccagcagagggtctgggcccc 1635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36000100 tctggggatcgcccggaattgagaagtgtatttgggagaccagcagagggtctgggcccc 36000041
Query: 1636 tccatttgccctcctgaattgagccaatttagtccccacctcttggcctgttaccagctg 1695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36000040 tccatttgccctcctgaattgagccaatttagtccccacctcttggcctgttaccagctg 35999981
Query: 1696 ctggaatgtgaaagattctgatgctccttcctctgaagtgtatcaggagtgctcgcttgg 1755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35999980 ctggaatgtgaaagattctgatgctccttcctctgaagtgtatcaggagtgctcgcttgg 35999921
Query: 1756 gcagcacatctactgaaattagagcagacctagagaaaggggatttggggatggatggga 1815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35999920 gcagcacatctactgaaattagagcagacctagagaaaggggatttggggatggatggga 35999861
Query: 1816 aggaagttttattttggactgtaagcatccaagagcactttatccacaagaagtaaggaa 1875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35999860 aggaagttttattttggactgtaagcatccaagagcactttatccacaagaagtaaggaa 35999801
Query: 1876 agttagattgagagtggccaagagaaataggagttactaatccaggactaaggtgtggtg 1935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35999800 agttagattgagagtggccaagagaaataggagttactaatccaggactaaggtgtggtg 35999741
Query: 1936 ccggaacagctgtgcctctcacaatctcccagttgtcccccttatcggagacctctatgc 1995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35999740 ccggaacagctgtgcctctcacaatctcccagttgtcccccttatcggagacctctatgc 35999681
Query: 1996 tctgtgacgtcagtgtgaccactgggttcaaataacagttctggagctgatacatctcag 2055
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35999680 tctgtgacgtcagtgtgaccactgggttcaaataacagttctggagctgatacatctcag 35999621
Query: 2056 agaagcaccctggccaaggcatcaggaaagagtgatgggtaccacgaagtgaagttacta 2115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35999620 agaagcaccctggccaaggcatcaggaaagagtgatgggtaccacgaagtgaagttacta 35999561
Query: 2116 aactaatacctggcagcaatgggggcagaattccttatgtgagccaagaagagggagttg 2175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35999560 aactaatacctggcagcaatgggggcagaattccttatgtgagccaagaagagggagttg 35999501
Query: 2176 tagataattcgttagatgaaaattttgtacctcaaatactcagcccagagttagggtgcc 2235
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35999500 tagataattcgttagatgaaaattttgtacctcaaatactcagcccagagttagggtgca 35999441
Query: 2236 aggtttgagtgtggatccctgggactgtgtcactctgggctgagactttttcc 2288
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 35999440 aggtttgagtgtggatccctgggactgtgtcactctggcctgagacattttcc 35999388
Score = 593 bits (299), Expect = e-166
Identities = 302/303 (99%)
Strand = Plus / Minus
Query: 133 tcgggagctcgctcggcgcccagagccagcaggagtcccggccggaccgggacatgtccg 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36003645 tcgggagctcgctcggcgcccagagccagcaggagtcccggccggaccgggacatgtccg 36003586
Query: 193 ctgagcccgagctcattgagctgcgggaactggcacccgctcggtgcgccgccccggtcc 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36003585 ctgagcccgagctcattgagctgcgggaactggcacccgctcggtgcgccgccccggtcc 36003526
Query: 253 gcacccggctggagcgtgccaacgcgctgcgcattgctccgggcacagcgcgcaacaacg 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36003525 gcacccggctggagcgtgccaacgcgctgcgcattgctccgggcacagcgcgcaacaacg 36003466
Query: 313 caaggcagctggtcccgggccgcggccaccgcttccagcctgcggggcccgccacgcaca 372
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 36003465 caaggcagctggtcccgggccgaggccaccgcttccagcctgcggggcccgccacgcaca 36003406
Query: 373 cgtggtgcgacctctgtggtgacttcatctggggcgtcgtgcgcaagggcctgcagtgcg 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36003405 cgtggtgcgacctctgtggtgacttcatctggggcgtcgtgcgcaagggcctgcagtgcg 36003346
Query: 433 cac 435
|||
Sbjct: 36003345 cac 36003343
Score = 208 bits (105), Expect = 1e-50
Identities = 105/105 (100%)
Strand = Plus / Minus
Query: 1 cttctcctgcgggagggcagacgcagcctgggtgctgggtatccctggcgccgcgctctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36003777 cttctcctgcgggagggcagacgcagcctgggtgctgggtatccctggcgccgcgctctt 36003718
Query: 61 ttgctctcccgccgctctgcctgaaccccggaggcggcgccgcat 105
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36003717 ttgctctcccgccgctctgcctgaaccccggaggcggcgccgcat 36003673
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 52,131,835
Number of extensions: 317
Number of successful extensions: 317
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 317
Number of HSP's successfully gapped: 3
Length of query: 2288
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2266
Effective length of database: 2,808,408,574
Effective search space: 6363853828684
Effective search space used: 6363853828684
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)