Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012724
(1223 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849704.1| PREDICTED: similar to Lung carbonyl reductase [... 382 e-106
Alignment gi|XP_533135.2| PREDICTED: similar to dicarbonyl L-xylulose red... 303 3e-82
Alignment gi|NP_001041699.1| dehydrogenase/reductase SDR family member 4 ... 103 3e-22
Alignment gi|XP_851004.1| PREDICTED: similar to Estradiol 17-beta-dehydro... 102 6e-22
Alignment gi|XP_547738.2| PREDICTED: similar to dehydrogenase/reductase (... 96 7e-20
Alignment gi|XP_535676.1| PREDICTED: similar to dehydrogenase/reductase (... 95 1e-19
Alignment gi|XP_547739.1| PREDICTED: similar to dehydrogenase/reductase m... 90 4e-18
Alignment gi|XP_862851.1| PREDICTED: similar to Estradiol 17-beta-dehydro... 89 1e-17
Alignment gi|XP_548249.1| PREDICTED: similar to short-chain dehydrogenase... 86 6e-17
Alignment gi|NP_001041446.1| 17-beta-hydroxysteroid dehydrogenase 14 [Can... 80 3e-15
>ref|XP_849704.1| PREDICTED: similar to Lung carbonyl reductase [NADPH]
(NADPH-dependent carbonyl reductase) (LCR) (Adipocyte
P27 protein) (AP27) [Canis familiaris].
Length = 270
Score = 382 bits (981), Expect = e-106
Identities = 201/270 (74%), Positives = 222/270 (82%), Gaps = 26/270 (9%)
Frame = +3
Query: 27 MQMNFSGLRALVTGAGK--------------------------GIGRDMVKALHVSGARV 128
MQ+NFSGL+ALVTGAGK GIGRD VKALH GARV
Sbjct: 1 MQLNFSGLQALVTGAGKVKGAAALALSLELHVLSHLLTHCTPAGIGRDTVKALHGLGARV 60
Query: 129 VAVTRTNADLVSLSQECPGIEPVCVDLGDWEATERALGGVGPVDLLVNNAAVALMQPFLD 308
+AV+RTN DLVSLS+ECPGIE VCVDLGDWEATERALG VGPVDLLVNNAAVAL+QPFL+
Sbjct: 61 LAVSRTNTDLVSLSKECPGIETVCVDLGDWEATERALGSVGPVDLLVNNAAVALLQPFLE 120
Query: 309 TTKEVFDRSFNVNLRSVFQVSQIVARSMIERGVPGSIVNVSSMVSHVTYPGLAAYSSTKG 488
TKE FDR+FNVNLRSV QVSQIVAR MI RGVPGSIVNVSSMV+HVT+P L+ YSSTKG
Sbjct: 121 VTKEAFDRAFNVNLRSVVQVSQIVARGMIHRGVPGSIVNVSSMVAHVTFPNLSVYSSTKG 180
Query: 489 AMTMLTKSMAMELGPHKIRVNSVNPTVVLTAMGRSVTSDPELARKLKERHPMRKFAEVED 668
AMTMLTK+MA ELGP++IRVNSV+PTVV TAM + + +DPEL RKLKERHP+RKFA++ED
Sbjct: 181 AMTMLTKAMASELGPYQIRVNSVDPTVVPTAMSQKILTDPELVRKLKERHPLRKFADMED 240
Query: 669 VVNSILFLLSDRSASTSGSSIFVDAGYLAS 758
VVNSILFLLSDRSASTSGS I VD GYLAS
Sbjct: 241 VVNSILFLLSDRSASTSGSGILVDGGYLAS 270
>ref|XP_533135.2| PREDICTED: similar to dicarbonyl L-xylulose reductase [Canis
familiaris].
Length = 235
Score = 303 bits (775), Expect = 3e-82
Identities = 153/227 (67%), Positives = 186/227 (81%)
Frame = +3
Query: 78 GIGRDMVKALHVSGARVVAVTRTNADLVSLSQECPGIEPVCVDLGDWEATERALGGVGPV 257
GIGR V+ALH G +VVAV+RT ADL SL +ECPG+EPVCVDLGDWEATERALG VGPV
Sbjct: 9 GIGRSTVQALHAMGVQVVAVSRTQADLDSLVRECPGVEPVCVDLGDWEATERALGSVGPV 68
Query: 258 DLLVNNAAVALMQPFLDTTKEVFDRSFNVNLRSVFQVSQIVARSMIERGVPGSIVNVSSM 437
DLLVNNAAVAL+QPFL+ TKE D SF+VNLR++ QVSQIVAR +I RG PGSIVN+SS
Sbjct: 69 DLLVNNAAVALLQPFLEVTKEACDTSFHVNLRAIIQVSQIVARGLIARGAPGSIVNISSQ 128
Query: 438 VSHVTYPGLAAYSSTKGAMTMLTKSMAMELGPHKIRVNSVNPTVVLTAMGRSVTSDPELA 617
S + Y STKGAM MLTK MA+ELGPHKIRVN+VNPTVV+T MG++ S+P+ A
Sbjct: 129 ASQRAIANHSVYCSTKGAMDMLTKVMALELGPHKIRVNTVNPTVVMTPMGQANWSNPQKA 188
Query: 618 RKLKERHPMRKFAEVEDVVNSILFLLSDRSASTSGSSIFVDAGYLAS 758
+ + +R P+ KFAEVE+VV++ILFLLSDRS+ T+GS++ VD G+LA+
Sbjct: 189 KTMLDRIPLGKFAEVENVVDTILFLLSDRSSMTTGSAVPVDGGFLAT 235
>ref|NP_001041699.1| dehydrogenase/reductase SDR family member 4 [Canis lupus
familiaris].
Length = 255
Score = 103 bits (258), Expect = 3e-22
Identities = 73/243 (30%), Positives = 130/243 (53%), Gaps = 12/243 (4%)
Frame = +3
Query: 54 ALVTGAGKGIGRDMVKALHVSGARVVAVTRT--NAD--LVSLSQECPGIEPVCVDLGDWE 221
ALVT + GIG + + L GA VV +R N D + +L E + +G E
Sbjct: 12 ALVTASTDGIGFAIARRLARDGAHVVVSSRKQHNVDRAVAALQGEGLSVTGTVCHVGKAE 71
Query: 222 ATERALGGV----GPVDLLVNNAAVALMQPF----LDTTKEVFDRSFNVNLRSVFQVSQI 377
ER + G +D+L++NAAV PF +D T+EV+D+ ++N+++ +++
Sbjct: 72 DRERLVATAVNLHGGIDILISNAAV---NPFFGNLMDVTEEVWDKILDINVKATALMTKA 128
Query: 378 VARSMIERGVPGSIVNVSSMVSHVTYPGLAAYSSTKGAMTMLTKSMAMELGPHKIRVNSV 557
V M +RG GS+V V+S+ +++ +PGL Y+ +K A+ LTK++A EL IRVN +
Sbjct: 129 VVPEMEKRG-GGSVVIVASIGAYLPFPGLGPYNVSKTALLGLTKNLARELDQRNIRVNCL 187
Query: 558 NPTVVLTAMGRSVTSDPELARKLKERHPMRKFAEVEDVVNSILFLLSDRSASTSGSSIFV 737
P ++ T+ + + D +K+ +R+ + +D + FL S+ ++ +G ++ V
Sbjct: 188 APGLIKTSFSKVLWMDKAREESIKKVMQIRRMGKPDDCAGIVSFLCSEDASYITGETVVV 247
Query: 738 DAG 746
G
Sbjct: 248 GGG 250
>ref|XP_851004.1| PREDICTED: similar to Estradiol 17-beta-dehydrogenase 8
(17-beta-HSD 8) (17-beta-hydroxysteroid dehydrogenase 8)
(Protein Ke6) (Ke-6) isoform 2 [Canis familiaris].
Length = 259
Score = 102 bits (255), Expect = 6e-22
Identities = 79/247 (31%), Positives = 121/247 (48%), Gaps = 16/247 (6%)
Frame = +3
Query: 54 ALVTGAGKGIGRDMVKALHVSGARVVAVTRTNADLVSL---------SQECPGIEPVC-- 200
ALVTGAG GIGR + L GA V A A + PG
Sbjct: 12 ALVTGAGSGIGRAVSVRLAKEGATVAACDLDRAAACETVWLLGGQGSEKVAPGGAHTAFQ 71
Query: 201 VDLGDWEATERALGGVG-----PVDLLVNNAAVALMQPFLDTTKEVFDRSFNVNLRSVFQ 365
D+ + A R L V P ++V+ A + + L +++ +DR VNL+ +F
Sbjct: 72 ADVSEAGAVRRLLEQVQACFSRPPSVVVSCAGLTRDEFLLRMSEDDWDRVIAVNLKGIFL 131
Query: 366 VSQIVARSMIERGVPGSIVNVSSMVSHVTYPGLAAYSSTKGAMTMLTKSMAMELGPHKIR 545
V+Q A++++ G GSI+N+SS+V V G Y+++K + LT++ A ELG H IR
Sbjct: 132 VTQAAAQALVSSGCRGSIINISSIVGKVGNVGQTNYAASKAGVIGLTQTAARELGRHGIR 191
Query: 546 VNSVNPTVVLTAMGRSVTSDPELARKLKERHPMRKFAEVEDVVNSILFLLSDRSASTSGS 725
NSV P + T M + V ++ K+ PM + EDV +++ FL S+ S +G+
Sbjct: 192 CNSVLPGFITTPMTQKVPQ--KVLDKVIGMIPMGHLGDPEDVADAVTFLASEDSGYITGA 249
Query: 726 SIFVDAG 746
S+ V G
Sbjct: 250 SVEVTGG 256
>ref|XP_547738.2| PREDICTED: similar to dehydrogenase/reductase (SDR family) member 2
isoform 2 [Canis familiaris].
Length = 370
Score = 95.9 bits (237), Expect = 7e-20
Identities = 73/241 (30%), Positives = 128/241 (53%), Gaps = 9/241 (3%)
Frame = +3
Query: 54 ALVTGAGKGIGRDMVKALHVSGARVVAVTRT--NAD--LVSLSQECPGIEPVCVDLGDWE 221
A+VTGA GIG + + L GA VV +R N D + +L E + +G E
Sbjct: 128 AVVTGATDGIGFAIARRLARDGAHVVVSSRKQHNVDRAVAALQGEGLSVTGTVCHVGKAE 187
Query: 222 ATERALGGV----GPVDLLVNNAAV-ALMQPFLDTTKEVFDRSFNVNLRSVFQVSQIVAR 386
ER + V G +D LV NAAV L++ L ++EV+D+ +VN++S + +
Sbjct: 188 DRERLVATVLEHYGGLDFLVCNAAVNPLVRSTLQASEEVWDKILDVNVKSPALLLSQLLP 247
Query: 387 SMIERGVPGSIVNVSSMVSHVTYPGLAAYSSTKGAMTMLTKSMAMELGPHKIRVNSVNPT 566
M RG+ G+++ VSS+ +++ + L Y+ +K A+ LT+++++EL P IRVN + P
Sbjct: 248 HMENRGM-GAVILVSSIAAYIPHVELGPYNVSKTALLGLTRTLSLELAPKGIRVNCLVPG 306
Query: 567 VVLTAMGRSVTSDPELARKLKERHPMRKFAEVEDVVNSILFLLSDRSASTSGSSIFVDAG 746
++ T + + + KE++ +++ + ED + FL S + +G +I V AG
Sbjct: 307 IIKTNFSKVLHMNEVFWNNFKEKYRLQRLGQPEDCAGLVSFLCSPDACYINGENIVV-AG 365
Query: 747 Y 749
+
Sbjct: 366 F 366
>ref|XP_535676.1| PREDICTED: similar to dehydrogenase/reductase (SDR family) member 6
[Canis familiaris].
Length = 245
Score = 95.1 bits (235), Expect = 1e-19
Identities = 68/236 (28%), Positives = 121/236 (51%), Gaps = 5/236 (2%)
Frame = +3
Query: 57 LVTGAGKGIGRDMVKALHVSGARVVAVTRTNADLVSLSQECPGIEPVCVDLGDWEATERA 236
++T A +GIGR A GA+V+A + L L ++ PGI+ +D+ + ++
Sbjct: 10 VLTAAAQGIGRAAALAFAREGAKVIATDINESKLQEL-EKYPGIQTRTLDVTKKKQIDQF 68
Query: 237 LGGVGPVDLLVNNAAVALMQPFLDTTKEVFDRSFNVNLRSVFQVSQIVARSMIERGVPGS 416
+G +D+L N A LD ++ +D S N+N+RS++ + + M+ + G+
Sbjct: 69 ANEIGRLDVLFNVAGFVHHGTILDCEEKDWDFSMNLNIRSMYLMIKAFLPKMLAQK-SGN 127
Query: 417 IVNVSSMVSHVT-YPGLAAYSSTKGAMTMLTKSMAMELGPHKIRVNSVNPTVVLT-AMGR 590
I+N+SS+ S + YS+TK A+ LTKS+A + IR N V P V T ++
Sbjct: 128 IINMSSVASSIKGVENRCVYSTTKAAVIGLTKSLATDFIQQGIRCNCVCPATVDTPSLQE 187
Query: 591 SVTSDPELARKLK---ERHPMRKFAEVEDVVNSILFLLSDRSASTSGSSIFVDAGY 749
+ + P L +R + +FA E++ ++L SD SA +G+ + +D G+
Sbjct: 188 RIQARPNTEEALNYFLKRQKIGRFATAEEIALLCVYLASDESAYITGNPVIIDGGW 243
>ref|XP_547739.1| PREDICTED: similar to dehydrogenase/reductase member 2 [Canis
familiaris].
Length = 278
Score = 90.1 bits (222), Expect = 4e-18
Identities = 79/246 (32%), Positives = 124/246 (50%), Gaps = 9/246 (3%)
Frame = +3
Query: 39 FSGLRALVTGAGKGIGRDMVKALHVSGARVVAVTRT--NAD--LVSLSQECPGIEPVCVD 206
+ G A V + IG + + L GA VV +R N D + +L E +
Sbjct: 31 WGGDEATVAISAHRIGFAIARRLARDGAHVVVSSRKQHNVDRAVAALQGEGLSVTGTVCH 90
Query: 207 LGDWEATER----ALGGVGPVDLLVNNAAV-ALMQPFLDTTKEVFDRSFNVNLRSVFQVS 371
+G E ER AL G VD LV A V L+ L +++V+D+ +VN++S +
Sbjct: 91 VGKAEDRERLVATALEHYGGVDFLVCVAGVNPLVGSTLGASEQVWDKVLDVNVKSPALLL 150
Query: 372 QIVARSMIERGVPGSIVNVSSMVSHVTYPGLAAYSSTKGAMTMLTKSMAMELGPHKIRVN 551
+ M RG GS+V VSSMV++V P L Y+++K A+ L KS+A+EL P IRVN
Sbjct: 151 SQLLPHMENRGA-GSVVLVSSMVAYVPIPKLGVYNTSKTALLGLCKSLAIELAPKGIRVN 209
Query: 552 SVNPTVVLTAMGRSVTSDPELARKLKERHPMRKFAEVEDVVNSILFLLSDRSASTSGSSI 731
+ P ++ T + + P L + + +++F E E+ + FL S ++ +G +I
Sbjct: 210 CLVPGIIKTDFMQVEKTLPYLLPDFNDIYGLQRFGEPEECAGIVSFLCSSDASYITGENI 269
Query: 732 FVDAGY 749
V AGY
Sbjct: 270 VV-AGY 274
>ref|XP_862851.1| PREDICTED: similar to Estradiol 17-beta-dehydrogenase 8
(17-beta-HSD 8) (17-beta-hydroxysteroid dehydrogenase 8)
(Protein Ke6) (Ke-6) isoform 3 [Canis familiaris].
Length = 147
Score = 88.6 bits (218), Expect = 1e-17
Identities = 51/145 (35%), Positives = 84/145 (57%)
Frame = +3
Query: 312 TKEVFDRSFNVNLRSVFQVSQIVARSMIERGVPGSIVNVSSMVSHVTYPGLAAYSSTKGA 491
+++ +DR VNL+ +F V+Q A++++ G GSI+N+SS+V V G Y+++K
Sbjct: 2 SEDDWDRVIAVNLKGIFLVTQAAAQALVSSGCRGSIINISSIVGKVGNVGQTNYAASKAG 61
Query: 492 MTMLTKSMAMELGPHKIRVNSVNPTVVLTAMGRSVTSDPELARKLKERHPMRKFAEVEDV 671
+ LT++ A ELG H IR NSV P + T M + V ++ K+ PM + EDV
Sbjct: 62 VIGLTQTAARELGRHGIRCNSVLPGFITTPMTQKVPQ--KVLDKVIGMIPMGHLGDPEDV 119
Query: 672 VNSILFLLSDRSASTSGSSIFVDAG 746
+++ FL S+ S +G+S+ V G
Sbjct: 120 ADAVTFLASEDSGYITGASVEVTGG 144
>ref|XP_548249.1| PREDICTED: similar to short-chain dehydrogenase/reductase isoform 1
[Canis familiaris].
Length = 274
Score = 86.3 bits (212), Expect = 6e-17
Identities = 77/231 (33%), Positives = 112/231 (48%), Gaps = 16/231 (6%)
Frame = +3
Query: 54 ALVTGAGKGIGRDMVKALHVSGARVVAVTRTNADLVSLSQEC-----PG-IEPVCVDLGD 215
ALVTGA GIG + +AL G +VV RT ++ L+ EC PG + P DL
Sbjct: 28 ALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPHRCDLSS 87
Query: 216 WEATERALGGV----GPVDLLVNNAAVALMQPFLDTTKEVFDRSFNVNLRSVFQVSQIVA 383
E V VD+ +NNA +A L + + FNVN+ ++ ++
Sbjct: 88 EEDILSMFSAVRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAY 147
Query: 384 RSMIERGV-PGSIVNVSSMVSHVTYPG--LAAYSSTKGAMTMLTKSMAMEL--GPHKIRV 548
+SM ER V G I+N++SM H P + YS+TK A+T LT+ + EL IR
Sbjct: 148 QSMKERKVDDGHIININSMSGHQVSPHSVIHFYSATKYAVTALTEGLRQELREAQTHIRA 207
Query: 549 NSVNPTVVLTAMGRSV-TSDPELARKLKERHPMRKFAEVEDVVNSILFLLS 698
++P VV T + DPE A ER K + EDV +++++LS
Sbjct: 208 TCISPEVVETQFAFKLHDKDPEKAAVTYER---IKCLKPEDVAEAVIYVLS 255
>ref|NP_001041446.1| 17-beta-hydroxysteroid dehydrogenase 14 [Canis lupus familiaris].
Length = 270
Score = 80.5 bits (197), Expect = 3e-15
Identities = 63/245 (25%), Positives = 121/245 (49%), Gaps = 9/245 (3%)
Frame = +3
Query: 39 FSGLRALVTGAGKGIGRDMVKALHVSGARVVAVTRTNADLVSLSQECPGIEPVCVDLGDW 218
++G +VTG G+GIG + +A +GA+VV + + +L QE G + D+
Sbjct: 7 YAGKVVVVTGGGRGIGAGIARAFVQNGAQVVICDKDESGGRALEQELTGTVFILCDVTRE 66
Query: 219 EATERALGGV----GPVDLLVNNAAVALMQPFLD-TTKEVFDRSFNVNLRSVFQVSQIVA 383
+ + + G +D +VNNA + + T+ E F + +NL + V++
Sbjct: 67 KDVQTLISETVRRFGRLDCVVNNAGYHPPPQWPEETSAEGFRQLLELNLLGTYTVTKFAL 126
Query: 384 RSMIERGVPGSIVNVSSMVSHVTYPGLAAYSSTKGAMTMLTKSMAMELGPHKIRVNSVNP 563
+ R G+I+N+SS+V + Y +TKGA+T +TK++A++ + +RVN ++P
Sbjct: 127 PHL--RKSQGNIINISSLVGAIGQVQAVPYVATKGAVTAMTKALALDESRYGVRVNCISP 184
Query: 564 TVVLTAMGRSVTS-DPELARKLKE---RHPMRKFAEVEDVVNSILFLLSDRSASTSGSSI 731
+ T M + + P+ A + + P+ + + +V + +FL S+ + T G +
Sbjct: 185 GNIWTPMWEGLAALTPDPAATVLQGTMNQPLGRLGQPAEVGAAAVFLASEATFCT-GIEL 243
Query: 732 FVDAG 746
V G
Sbjct: 244 LVTGG 248
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,935,197
Number of extensions: 910372
Number of successful extensions: 4373
Number of sequences better than 1.0e-05: 56
Number of HSP's gapped: 4315
Number of HSP's successfully gapped: 57
Length of query: 407
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 302
Effective length of database: 15,374,224
Effective search space: 4643015648
Effective search space used: 4643015648
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012724
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012724
(1223 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001193891.1| L-xylulose reductase-like [Bos taurus]. 419 e-117
Alignment gi|NP_001069359.1| L-xylulose reductase [Bos taurus]. 322 6e-88
Alignment gi|NP_777247.1| dehydrogenase/reductase SDR family member 4 [Bo... 108 1e-23
Alignment gi|NP_001039789.1| estradiol 17-beta-dehydrogenase 8 [Bos tauru... 107 2e-23
Alignment gi|NP_001029660.1| 3-hydroxybutyrate dehydrogenase type 2 [Bos ... 89 8e-18
Alignment gi|NP_777126.1| 17-beta-hydroxysteroid dehydrogenase 14 [Bos ta... 88 2e-17
Alignment gi|NP_001030260.1| dehydrogenase/reductase SDR family member 11... 88 2e-17
Alignment gi|NP_001030420.1| dehydrogenase/reductase SDR family member 7B... 80 5e-15
Alignment gi|XP_002702202.1| PREDICTED: dehydrogenase/reductase SDR famil... 77 4e-14
Alignment gi|NP_001068891.1| 2,4-dienoyl-CoA reductase, mitochondrial [Bo... 74 3e-13
>ref|NP_001193891.1| L-xylulose reductase-like [Bos taurus].
Length = 244
Score = 419 bits (1077), Expect = e-117
Identities = 213/244 (87%), Positives = 232/244 (95%)
Frame = +3
Query: 27 MQMNFSGLRALVTGAGKGIGRDMVKALHVSGARVVAVTRTNADLVSLSQECPGIEPVCVD 206
MQ+NFSGLRALVTGAGKGIGRD VKAL+ SGARVVAV+RTNADLVSLS+ECPGIEPVCVD
Sbjct: 1 MQLNFSGLRALVTGAGKGIGRDTVKALYASGARVVAVSRTNADLVSLSKECPGIEPVCVD 60
Query: 207 LGDWEATERALGGVGPVDLLVNNAAVALMQPFLDTTKEVFDRSFNVNLRSVFQVSQIVAR 386
LGDW+ATE+ALGGVGPVDLLVNNAAVALM+PFL+ TKE FDRSF+VNLRS FQVSQIVAR
Sbjct: 61 LGDWKATEKALGGVGPVDLLVNNAAVALMRPFLEVTKEDFDRSFSVNLRSAFQVSQIVAR 120
Query: 387 SMIERGVPGSIVNVSSMVSHVTYPGLAAYSSTKGAMTMLTKSMAMELGPHKIRVNSVNPT 566
MI RGVPGSIVNVSSMV+HVT+P LAAYS+TKGAMTMLTKSMAMELGP+KIRVNSVNPT
Sbjct: 121 GMINRGVPGSIVNVSSMVAHVTFPNLAAYSTTKGAMTMLTKSMAMELGPYKIRVNSVNPT 180
Query: 567 VVLTAMGRSVTSDPELARKLKERHPMRKFAEVEDVVNSILFLLSDRSASTSGSSIFVDAG 746
VVLTAMG+ V++DPE ++KLKERHP+RKFAEVEDVVNSILFLLSDRSASTSGS I VDAG
Sbjct: 181 VVLTAMGQKVSADPEFSQKLKERHPLRKFAEVEDVVNSILFLLSDRSASTSGSGILVDAG 240
Query: 747 YLAS 758
YLAS
Sbjct: 241 YLAS 244
>ref|NP_001069359.1| L-xylulose reductase [Bos taurus].
Length = 244
Score = 322 bits (824), Expect = 6e-88
Identities = 163/244 (66%), Positives = 199/244 (81%)
Frame = +3
Query: 27 MQMNFSGLRALVTGAGKGIGRDMVKALHVSGARVVAVTRTNADLVSLSQECPGIEPVCVD 206
M + +G RALVTGAGKGIGR +VKALH +GARVVAV+RT ADL SL +ECPG+E VCVD
Sbjct: 1 MDLRLAGRRALVTGAGKGIGRSIVKALHAAGARVVAVSRTQADLDSLVRECPGVETVCVD 60
Query: 207 LGDWEATERALGGVGPVDLLVNNAAVALMQPFLDTTKEVFDRSFNVNLRSVFQVSQIVAR 386
L DWEATE+ALGGVGPVDLLVNNAAVA +QPFL+ TKE +D SF+VNLR+V QVSQIVAR
Sbjct: 61 LADWEATEQALGGVGPVDLLVNNAAVAFLQPFLEVTKEAYDMSFSVNLRAVIQVSQIVAR 120
Query: 387 SMIERGVPGSIVNVSSMVSHVTYPGLAAYSSTKGAMTMLTKSMAMELGPHKIRVNSVNPT 566
+I RG PG IVNVSS S + Y STKGA+ LTK MA+ELGPHKIRVN+VNPT
Sbjct: 121 GLIARGAPGVIVNVSSQASQRGLTNHSVYCSTKGALDTLTKVMAVELGPHKIRVNAVNPT 180
Query: 567 VVLTAMGRSVTSDPELARKLKERHPMRKFAEVEDVVNSILFLLSDRSASTSGSSIFVDAG 746
VV+T MG++ SDP+ A+ + +R P+ +FAEVE+VV++ILFLLSDRS+ T+GS++ VD G
Sbjct: 181 VVMTPMGQAAWSDPQKAKAMLDRIPLGRFAEVENVVDTILFLLSDRSSMTTGSTVPVDGG 240
Query: 747 YLAS 758
+LA+
Sbjct: 241 FLAT 244
>ref|NP_777247.1| dehydrogenase/reductase SDR family member 4 [Bos taurus].
Length = 260
Score = 108 bits (270), Expect = 1e-23
Identities = 74/243 (30%), Positives = 129/243 (53%), Gaps = 9/243 (3%)
Frame = +3
Query: 54 ALVTGAGKGIGRDMVKALHVSGARVVAVTRT--NAD--LVSLSQECPGIEPVCVDLGDWE 221
ALVT + GIG + + L GA VV +R N D + +L E + +G E
Sbjct: 17 ALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDRAVATLKGEGLSVTGTVCHVGKAE 76
Query: 222 ATERALGGV----GPVDLLVNNAAVA-LMQPFLDTTKEVFDRSFNVNLRSVFQVSQIVAR 386
ER + G VD+L++NAAV+ +D +EV+D+ +VN+++ +++ V
Sbjct: 77 DRERLVATAVKLHGGVDILISNAAVSPFFGSLMDVPEEVWDKILDVNVKATALLTKAVVP 136
Query: 387 SMIERGVPGSIVNVSSMVSHVTYPGLAAYSSTKGAMTMLTKSMAMELGPHKIRVNSVNPT 566
M +RG GSIV VSS+ ++ +P L Y+ +K A+ LTK++A+EL +RVN + P
Sbjct: 137 EMAKRG-GGSIVIVSSIAAYSPFPSLGPYNVSKTALLGLTKNLALELAESNVRVNCLAPG 195
Query: 567 VVLTAMGRSVTSDPELARKLKERHPMRKFAEVEDVVNSILFLLSDRSASTSGSSIFVDAG 746
++ T+ R + DP +K +++ + E+ + FL S+ ++ +G ++ V G
Sbjct: 196 LIRTSFSRVLWEDPARQESIKATFQIKRIGKPEECAGIVSFLCSEDASYITGETVVVAGG 255
Query: 747 YLA 755
L+
Sbjct: 256 SLS 258
>ref|NP_001039789.1| estradiol 17-beta-dehydrogenase 8 [Bos taurus].
Length = 259
Score = 107 bits (268), Expect = 2e-23
Identities = 81/247 (32%), Positives = 121/247 (48%), Gaps = 16/247 (6%)
Frame = +3
Query: 54 ALVTGAGKGIGRDMVKALHVSGARVVAVTRTNADLVSLSQEC--PGIEPVC--------- 200
ALVTGAG GIGR + L GA V A A Q PG E
Sbjct: 12 ALVTGAGGGIGRAISVRLAAEGAAVAACDLDGAAARETVQLLGGPGTEEGAPRGAHAAFQ 71
Query: 201 VDLGDWEATERALGGVG-----PVDLLVNNAAVALMQPFLDTTKEVFDRSFNVNLRSVFQ 365
D+ + A R L V P ++V+ A + + L +++ +D+ VNL+ +F
Sbjct: 72 ADVSEAGAARRLLEQVQACFSRPPSVVVSCAGITRDEFLLHMSEDNWDKVIAVNLKGIFL 131
Query: 366 VSQIVARSMIERGVPGSIVNVSSMVSHVTYPGLAAYSSTKGAMTMLTKSMAMELGPHKIR 545
V+Q A++++ G PGSI+N+SS++ V G Y+++K + LT+S A ELG H IR
Sbjct: 132 VTQAAAQALVSSGCPGSIINISSIIGKVGNMGQTNYAASKAGVIGLTQSAARELGRHGIR 191
Query: 546 VNSVNPTVVLTAMGRSVTSDPELARKLKERHPMRKFAEVEDVVNSILFLLSDRSASTSGS 725
NSV P + T M + V ++ K+ PM EDV + + FL S+ S +G+
Sbjct: 192 CNSVLPGFIRTPMTQKVPQ--KVLDKVTGMIPMAHMGNPEDVADVVAFLASEDSGYITGA 249
Query: 726 SIFVDAG 746
S+ V G
Sbjct: 250 SVEVTGG 256
>ref|NP_001029660.1| 3-hydroxybutyrate dehydrogenase type 2 [Bos taurus].
Length = 245
Score = 89.0 bits (219), Expect = 8e-18
Identities = 68/237 (28%), Positives = 118/237 (49%), Gaps = 6/237 (2%)
Frame = +3
Query: 57 LVTGAGKGIGRDMVKALHVSGARVVAVTRTNADLVSLSQECPGIEPVCVDLGDWEATERA 236
++T A +GIGR A GA+V+A ++ L L + PGI +D+ + ++
Sbjct: 10 VLTAAAQGIGRAAALAFAKEGAKVIATDINDSKLQELDKY-PGIHTRVLDVTKKKQIDQF 68
Query: 237 LGGVGPVDLLVNNAAVALMQPFLDTTKEVFDRSFNVNLRSVF-QVSQIVARSMIERGVPG 413
+ +D+L N A LD + +D S N+N+RS++ + + + M ++ G
Sbjct: 69 ANDIERLDVLFNVAGFVHHGTILDCEETDWDFSMNLNVRSMYLMIKAFLPKMMAQKS--G 126
Query: 414 SIVNVSSMVSHVT-YPGLAAYSSTKGAMTMLTKSMAMELGPHKIRVNSVNP-TVVLTAMG 587
+I+N+SS+ S + YS+TK A+ LTKS+A + IR N V P TV ++
Sbjct: 127 NIINMSSVASSIKGVVNRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQ 186
Query: 588 RSVTSDPELARKLKE---RHPMRKFAEVEDVVNSILFLLSDRSASTSGSSIFVDAGY 749
+ + P L + R +FA E+V ++L SD SA +G+ + +D G+
Sbjct: 187 ERIQARPNPEEALSDFLKRQKTGRFATAEEVALLCVYLASDESAYITGNPVIIDGGW 243
>ref|NP_777126.1| 17-beta-hydroxysteroid dehydrogenase 14 [Bos taurus].
Length = 270
Score = 87.8 bits (216), Expect = 2e-17
Identities = 64/249 (25%), Positives = 125/249 (50%), Gaps = 9/249 (3%)
Frame = +3
Query: 27 MQMNFSGLRALVTGAGKGIGRDMVKALHVSGARVVAVTRTNADLVSLSQECPGIEPVCVD 206
M ++G +VTG G+GIG +V+A SGA+VV + A ++ +E PG + D
Sbjct: 3 MGTRYAGKVVIVTGGGRGIGAGIVRAFVESGAQVVICDKDEARGRAVERELPGTVFLLCD 62
Query: 207 LGDWE----ATERALGGVGPVDLLVNNAAVALMQPFLD-TTKEVFDRSFNVNLRSVFQVS 371
+ E + G +D +VNNA + + T+ + F + +NL + ++
Sbjct: 63 VTREEDVRTLVSETIRRFGRLDCIVNNAGYHPPPQWPEETSAQGFRQLLELNLLGTYTLT 122
Query: 372 QIVARSMIERGVPGSIVNVSSMVSHVTYPGLAAYSSTKGAMTMLTKSMAMELGPHKIRVN 551
++ + R G+++N+SS+V + Y +TKGA+T +TK++A++ + +RVN
Sbjct: 123 KLALPHL--RKSRGNVINISSLVGAIGQSQAVPYVATKGAVTAMTKALALDESQYGVRVN 180
Query: 552 SVNPTVVLTAMGRSV-TSDPELARKLKE---RHPMRKFAEVEDVVNSILFLLSDRSASTS 719
++P + T + + S P+ ++E P+ + + +V + +FL S+ + T
Sbjct: 181 CISPGNIWTPLWEELAASTPDPTATIREGTLAQPLGRMGQPAEVAAAAVFLASEATFCT- 239
Query: 720 GSSIFVDAG 746
G+ + V G
Sbjct: 240 GTELLVTGG 248
>ref|NP_001030260.1| dehydrogenase/reductase SDR family member 11 precursor [Bos
taurus].
Length = 255
Score = 87.8 bits (216), Expect = 2e-17
Identities = 76/231 (32%), Positives = 112/231 (48%), Gaps = 16/231 (6%)
Frame = +3
Query: 54 ALVTGAGKGIGRDMVKALHVSGARVVAVTRTNADLVSLSQEC-----PG-IEPVCVDLGD 215
ALVTGA GIG + +AL G +VV RT ++ L+ EC PG + P DL +
Sbjct: 9 ALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSN 68
Query: 216 WEATERALGGV----GPVDLLVNNAAVALMQPFLDTTKEVFDRSFNVNLRSVFQVSQIVA 383
E V VD+ +NNA +A L + + FNVN+ ++ ++
Sbjct: 69 EEDILSMFSAVRSQHSGVDICINNAGLARPDTLLSGSTSGWKEMFNVNVLALSICTREAC 128
Query: 384 RSMIERGV-PGSIVNVSSMVSHVTYPGLAA--YSSTKGAMTMLTKSMAMELGPHK--IRV 548
+SM ER V G I+N++SM H P YS+TK A+T LT+ + EL + IR
Sbjct: 129 QSMRERKVDDGHIININSMCGHRVPPPAETHFYSATKYAVTALTEGLRQELREARSHIRA 188
Query: 549 NSVNPTVVLTAMGRSV-TSDPELARKLKERHPMRKFAEVEDVVNSILFLLS 698
++P VV T + DPE A E K + EDV +++++LS
Sbjct: 189 TCISPGVVETQFAFKLHDKDPEKAAATYEH---MKCLKPEDVAEAVIYVLS 236
>ref|NP_001030420.1| dehydrogenase/reductase SDR family member 7B [Bos taurus].
Length = 325
Score = 79.7 bits (195), Expect = 5e-15
Identities = 58/198 (29%), Positives = 97/198 (48%), Gaps = 15/198 (7%)
Frame = +3
Query: 57 LVTGAGKGIGRDMVKALHVSGARVVAVTRTNADLVSLSQE-----CPGIE-----PVCVD 206
++TGA G+GR+ + H +GAR+V R L LSQE PG++ V D
Sbjct: 56 VITGATSGLGRECARVFHAAGARLVLCGRNAEALEELSQELAASRAPGVQTHKPCTVTFD 115
Query: 207 LGDWEATERALGGV----GPVDLLVNNAAVALMQPFLDTTKEVFDRSFNVNLRSVFQVSQ 374
L D A A + G VD+L+NNA ++ +DT+ +V R N +++
Sbjct: 116 LADPGAIAGAASEILQCFGHVDVLINNAGISYRGAIVDTSPDVDKRVMETNYFGPVALTK 175
Query: 375 IVARSMIERGVPGSIVNVSSMVSHVTYPGLAAYSSTKGAMTMLTKSMAMELGPHKIRVNS 554
+ +MI R G +V +SS+ ++ P +AY+++K A + E+ H I V
Sbjct: 176 ALLPAMIRRR-QGHVVAISSIQGKISLPFRSAYAASKHATQAFFDCLRAEVEQHDIEVTV 234
Query: 555 VNPTVVLTAMG-RSVTSD 605
++P + T + +VT+D
Sbjct: 235 ISPGYIHTNLSLNAVTAD 252
>ref|XP_002702202.1| PREDICTED: dehydrogenase/reductase SDR family member 7B-like [Bos
taurus].
Length = 325
Score = 76.6 bits (187), Expect = 4e-14
Identities = 57/198 (28%), Positives = 96/198 (48%), Gaps = 15/198 (7%)
Frame = +3
Query: 57 LVTGAGKGIGRDMVKALHVSGARVVAVTRTNADLVSLSQE-----CPGIE-----PVCVD 206
++TGA G+GR+ + H +GAR+V R L LSQE P ++ V D
Sbjct: 56 VITGATSGLGRECARVFHAAGARLVLCGRNAEALEELSQELAASRAPEVQTHKPCTVTFD 115
Query: 207 LGDWEATERALGGV----GPVDLLVNNAAVALMQPFLDTTKEVFDRSFNVNLRSVFQVSQ 374
L D A A + G VD+L+NNA ++ +DT+ +V R N +++
Sbjct: 116 LADPGAIAGAASEILQCFGHVDVLINNAGISYRGAIVDTSPDVDKRVMETNYFGPVALTK 175
Query: 375 IVARSMIERGVPGSIVNVSSMVSHVTYPGLAAYSSTKGAMTMLTKSMAMELGPHKIRVNS 554
+ +MI R G +V +SS+ ++ P +AY+++K A + E+ H I V
Sbjct: 176 ALLPAMIRRR-QGHVVAISSIQGKISLPFRSAYAASKHATQAFFDCLRAEVEQHDIEVTV 234
Query: 555 VNPTVVLTAMG-RSVTSD 605
++P + T + +VT+D
Sbjct: 235 ISPGYIHTNLSLNAVTAD 252
>ref|NP_001068891.1| 2,4-dienoyl-CoA reductase, mitochondrial [Bos taurus].
Length = 329
Score = 73.9 bits (180), Expect = 3e-13
Identities = 61/249 (24%), Positives = 114/249 (45%), Gaps = 12/249 (4%)
Frame = +3
Query: 36 NFSGLRALVTGAGKGIGRDMVKALHVSGA------RVVAVTRTNADLVSLSQECPGIEPV 197
+F G A +TG G G+G+ M L GA R + V + A+ +S SQ + +
Sbjct: 50 SFQGKVAFITGGGTGLGKGMTTCLSSLGAQCVIASRKIDVLKVTAEQIS-SQTGNKVHAI 108
Query: 198 CVDLGDWEATERALGG----VGPVDLLVNNAAVALMQPFLDTTKEVFDRSFNVNLRSVFQ 365
D+ D + + A+ +G D+++NNAA + P + + ++ L
Sbjct: 109 QCDVRDPDMVQNAVSETIKVIGHPDIVINNAAGNFISPSERLSPNAWKTITDIVLNGTAF 168
Query: 366 VSQIVARSMIERGVPGSIVNVSSMVSHVTYPGLAAYSSTKGAMTMLTKSMAMELGPHKIR 545
V+ + + +I+ S + ++++ + + +S K + L KS+A E G + +R
Sbjct: 169 VTLAIGKELIKAQKGASFLAITTIYAETGSGFVVPSASAKAGVEALNKSLAAEWGKYGMR 228
Query: 546 VNSVNPTVVLTAMGRSVTSDPELA--RKLKERHPMRKFAEVEDVVNSILFLLSDRSASTS 719
N + P + T G DP A +++ +R P + VE++ N FL SD ++ +
Sbjct: 229 FNVIQPGPIKT-KGAFSRLDPTGAFEKEMIDRIPCGRLGTVEELANLAAFLCSDYASWIN 287
Query: 720 GSSIFVDAG 746
G+ I D G
Sbjct: 288 GAVIRFDGG 296
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,435,455
Number of extensions: 900917
Number of successful extensions: 4250
Number of sequences better than 1.0e-05: 40
Number of HSP's gapped: 4193
Number of HSP's successfully gapped: 40
Length of query: 407
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 302
Effective length of database: 14,207,134
Effective search space: 4290554468
Effective search space used: 4290554468
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012724
(1223 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_998992.1| carbonyl reductase [NADPH] 2 [Sus scrofa]. 466 e-132
Alignment gi|NP_001124202.1| estradiol 17-beta-dehydrogenase 8 [Sus scrof... 110 2e-24
Alignment gi|NP_999184.1| dehydrogenase/reductase SDR family member 4 [Su... 106 2e-23
Alignment gi|XP_003357106.1| PREDICTED: 3-hydroxybutyrate dehydrogenase t... 90 3e-18
Alignment gi|XP_003129333.2| PREDICTED: 3-hydroxybutyrate dehydrogenase t... 90 3e-18
Alignment gi|XP_003131752.1| PREDICTED: dehydrogenase/reductase SDR famil... 87 2e-17
Alignment gi|XP_001927120.1| PREDICTED: carbonyl reductase family member ... 83 3e-16
Alignment gi|XP_001925948.1| PREDICTED: 3-ketodihydrosphingosine reductas... 72 5e-13
Alignment gi|NP_001177161.1| 2,4-dienoyl-CoA reductase, mitochondrial [Su... 69 7e-12
Alignment gi|XP_003135175.1| PREDICTED: 3-hydroxyacyl-CoA dehydrogenase t... 65 6e-11
>ref|NP_998992.1| carbonyl reductase [NADPH] 2 [Sus scrofa].
Length = 244
Score = 466 bits (1200), Expect = e-132
Identities = 242/244 (99%), Positives = 242/244 (99%)
Frame = +3
Query: 27 MQMNFSGLRALVTGAGKGIGRDMVKALHVSGARVVAVTRTNADLVSLSQECPGIEPVCVD 206
MQMNFSGLRALVTGAGKGIGRD VKALHVSGARVVAVTRTN DLVSLSQECPGIEPVCVD
Sbjct: 1 MQMNFSGLRALVTGAGKGIGRDTVKALHVSGARVVAVTRTNGDLVSLSQECPGIEPVCVD 60
Query: 207 LGDWEATERALGGVGPVDLLVNNAAVALMQPFLDTTKEVFDRSFNVNLRSVFQVSQIVAR 386
LGDWEATERALGGVGPVDLLVNNAAVALMQPFLDTTKEVFDRSFNVNLRSVFQVSQIVAR
Sbjct: 61 LGDWEATERALGGVGPVDLLVNNAAVALMQPFLDTTKEVFDRSFNVNLRSVFQVSQIVAR 120
Query: 387 SMIERGVPGSIVNVSSMVSHVTYPGLAAYSSTKGAMTMLTKSMAMELGPHKIRVNSVNPT 566
SMIERGVPGSIVNVSSMVSHVTYPGLAAYSSTKGAMTMLTKSMAMELGPHKIRVNSVNPT
Sbjct: 121 SMIERGVPGSIVNVSSMVSHVTYPGLAAYSSTKGAMTMLTKSMAMELGPHKIRVNSVNPT 180
Query: 567 VVLTAMGRSVTSDPELARKLKERHPMRKFAEVEDVVNSILFLLSDRSASTSGSSIFVDAG 746
VVLTAMGRSVTSDPELARKLKERHPMRKFAEVEDVVNSILFLLSDRSASTSGSSIFVDAG
Sbjct: 181 VVLTAMGRSVTSDPELARKLKERHPMRKFAEVEDVVNSILFLLSDRSASTSGSSIFVDAG 240
Query: 747 YLAS 758
YLAS
Sbjct: 241 YLAS 244
>ref|NP_001124202.1| estradiol 17-beta-dehydrogenase 8 [Sus scrofa].
Length = 259
Score = 110 bits (274), Expect = 2e-24
Identities = 80/255 (31%), Positives = 126/255 (49%), Gaps = 16/255 (6%)
Frame = +3
Query: 30 QMNFSGLRALVTGAGKGIGRDMVKALHVSGARVVAVTRTNADLVSLSQEC--PGIEPVC- 200
Q+ ALVTGAG GIGR + L GA V A A Q PG E
Sbjct: 4 QLRLRSALALVTGAGSGIGRAVSVRLAAEGAAVAACDLDGAAAQETVQLLGGPGSEKGAP 63
Query: 201 --------VDLGDWEATERALGGVG-----PVDLLVNNAAVALMQPFLDTTKEVFDRSFN 341
D+ + E R L V P ++V+ A + + L +++ +D+
Sbjct: 64 SGAHAAFQADVSEAETARRLLEQVQAYFFRPPSVVVSCAGITRDEFLLRMSEDDWDKVIA 123
Query: 342 VNLRSVFQVSQIVARSMIERGVPGSIVNVSSMVSHVTYPGLAAYSSTKGAMTMLTKSMAM 521
VNL+ +F V+Q A++++ G PGSI+N+SS++ V G Y+++K + LT+++A
Sbjct: 124 VNLKGIFLVTQAAAQALVSSGCPGSIINISSIIGKVGNMGQTNYAASKAGVIGLTQAVAR 183
Query: 522 ELGPHKIRVNSVNPTVVLTAMGRSVTSDPELARKLKERHPMRKFAEVEDVVNSILFLLSD 701
ELG ++IR NSV P + T M + V ++ K+ PM + EDV + + FL S+
Sbjct: 184 ELGRYRIRCNSVLPGFIKTPMAQKVPQ--KVLDKVVGMIPMGHLGDPEDVADVVAFLASE 241
Query: 702 RSASTSGSSIFVDAG 746
S +G+S+ V G
Sbjct: 242 DSGYITGASVEVTGG 256
>ref|NP_999184.1| dehydrogenase/reductase SDR family member 4 [Sus scrofa].
Length = 260
Score = 106 bits (265), Expect = 2e-23
Identities = 79/243 (32%), Positives = 129/243 (53%), Gaps = 12/243 (4%)
Frame = +3
Query: 54 ALVTGAGKGIGRDMVKALHVSGARVVAVTRT--NAD--LVSLSQECPGIEPVCVDLGDWE 221
ALVT + GIG + + L GA VV +R N D + +L E + +G E
Sbjct: 17 ALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAE 76
Query: 222 ATER----ALGGVGPVDLLVNNAAVALMQPF----LDTTKEVFDRSFNVNLRSVFQVSQI 377
ER A+ G VD+LV+NAAV PF +D T+EV+D+ +VN+++ +++
Sbjct: 77 DRERLVAMAVNLHGGVDILVSNAAV---NPFFGNIIDATEEVWDKILHVNVKATVLMTKA 133
Query: 378 VARSMIERGVPGSIVNVSSMVSHVTYPGLAAYSSTKGAMTMLTKSMAMELGPHKIRVNSV 557
V M +RG GS++ VSS+ ++ +P L Y+ +K A+ LTK++A+EL P IRVN +
Sbjct: 134 VVPEMEKRG-GGSVLIVSSVGAYHPFPNLGPYNVSKTALLGLTKNLAVELAPRNIRVNCL 192
Query: 558 NPTVVLTAMGRSVTSDPELARKLKERHPMRKFAEVEDVVNSILFLLSDRSASTSGSSIFV 737
P ++ T + + D +KE +R+ ED + FL S+ ++ +G ++ V
Sbjct: 193 APGLIKTNFSQVLWMDKARKEYMKESLRIRRLGNPEDCAGIVSFLCSEDASYITGETVVV 252
Query: 738 DAG 746
G
Sbjct: 253 GGG 255
>ref|XP_003357106.1| PREDICTED: 3-hydroxybutyrate dehydrogenase type 2-like isoform 2
[Sus scrofa].
Length = 245
Score = 89.7 bits (221), Expect = 3e-18
Identities = 68/236 (28%), Positives = 117/236 (49%), Gaps = 5/236 (2%)
Frame = +3
Query: 57 LVTGAGKGIGRDMVKALHVSGARVVAVTRTNADLVSLSQECPGIEPVCVDLGDWEATERA 236
++T A +GIGR A GA+V+A + L L + PGI+ +D+ + +
Sbjct: 10 ILTAAAQGIGRAAALAFAREGAKVIATDINESKLQEL-ENYPGIQTRVLDVTKKKQIDEF 68
Query: 237 LGGVGPVDLLVNNAAVALMQPFLDTTKEVFDRSFNVNLRSVFQVSQIVARSMIERGVPGS 416
+ +D+L N A LD ++ +D S N+N+RS++ + + M+ + G+
Sbjct: 69 ANDIERLDVLFNVAGFVHHGTILDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQK-SGN 127
Query: 417 IVNVSSMVSHVT-YPGLAAYSSTKGAMTMLTKSMAMELGPHKIRVNSVNP-TVVLTAMGR 590
I+N+SS+ S + YS+TK A+ LTKS+A + IR N V P TV ++
Sbjct: 128 IINMSSVASSIKGVVNRCVYSATKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQE 187
Query: 591 SVTSDPELARKLKE---RHPMRKFAEVEDVVNSILFLLSDRSASTSGSSIFVDAGY 749
+ + P L + R +FA E+V ++L SD SA +G+ + +D G+
Sbjct: 188 RIQARPNPEEALSDFLKRQKTGRFATAEEVALLCVYLASDESAYVTGNPVVIDGGW 243
>ref|XP_003129333.2| PREDICTED: 3-hydroxybutyrate dehydrogenase type 2-like isoform 1
[Sus scrofa].
Length = 245
Score = 89.7 bits (221), Expect = 3e-18
Identities = 68/236 (28%), Positives = 117/236 (49%), Gaps = 5/236 (2%)
Frame = +3
Query: 57 LVTGAGKGIGRDMVKALHVSGARVVAVTRTNADLVSLSQECPGIEPVCVDLGDWEATERA 236
++T A +GIGR A GA+V+A + L L + PGI+ +D+ + +
Sbjct: 10 ILTAAAQGIGRAAALAFAREGAKVIATDINESKLQEL-ENYPGIQTRVLDVTKKKQIDEF 68
Query: 237 LGGVGPVDLLVNNAAVALMQPFLDTTKEVFDRSFNVNLRSVFQVSQIVARSMIERGVPGS 416
+ +D+L N A LD ++ +D S N+N+RS++ + + M+ + G+
Sbjct: 69 ANDIERLDVLFNVAGFVHHGTILDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQK-SGN 127
Query: 417 IVNVSSMVSHVT-YPGLAAYSSTKGAMTMLTKSMAMELGPHKIRVNSVNP-TVVLTAMGR 590
I+N+SS+ S + YS+TK A+ LTKS+A + IR N V P TV ++
Sbjct: 128 IINMSSVASSIKGVVNRCVYSATKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQE 187
Query: 591 SVTSDPELARKLKE---RHPMRKFAEVEDVVNSILFLLSDRSASTSGSSIFVDAGY 749
+ + P L + R +FA E+V ++L SD SA +G+ + +D G+
Sbjct: 188 RIQARPNPEEALSDFLKRQKTGRFATAEEVALLCVYLASDESAYVTGNPVVIDGGW 243
>ref|XP_003131752.1| PREDICTED: dehydrogenase/reductase SDR family member 11-like [Sus
scrofa].
Length = 330
Score = 87.0 bits (214), Expect = 2e-17
Identities = 76/234 (32%), Positives = 114/234 (48%), Gaps = 16/234 (6%)
Frame = +3
Query: 45 GLRALVTGAGKGIGRDMVKALHVSGARVVAVTRTNADLVSLSQEC-----PG-IEPVCVD 206
G ALVTGA GIG + +AL G +VV RT ++ L+ EC PG + P D
Sbjct: 81 GRLALVTGASGGIGAAVARALVQHGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYKCD 140
Query: 207 LGDWEATERALGGV----GPVDLLVNNAAVALMQPFLDTTKEVFDRSFNVNLRSVFQVSQ 374
L + E + VD+ +NNA +A L + + FNVN+ ++ ++
Sbjct: 141 LSNEEDILSMFSAIRSQHSGVDICINNAGLARPDSLLSGSTSGWKDMFNVNVLALSICTR 200
Query: 375 IVARSMIERGV-PGSIVNVSSMVSHVTYPGLAA--YSSTKGAMTMLTKSMAMEL--GPHK 539
+SM ER V G I+N++SM H P A YS+TK A+T LT+ + EL
Sbjct: 201 EAYQSMRERKVDDGHIININSMSGHRVVPQSVAHFYSATKYAVTALTEGLRQELREAQTH 260
Query: 540 IRVNSVNPTVVLTAMGRSV-TSDPELARKLKERHPMRKFAEVEDVVNSILFLLS 698
IR ++P VV T + +PE A E+ K + EDV +++++LS
Sbjct: 261 IRATCISPGVVETQFAFKLHDKNPEKAAAAYEQ---MKCLKAEDVAEAVIYVLS 311
>ref|XP_001927120.1| PREDICTED: carbonyl reductase family member 4-like [Sus scrofa].
Length = 237
Score = 83.2 bits (204), Expect = 3e-16
Identities = 68/234 (29%), Positives = 114/234 (48%), Gaps = 5/234 (2%)
Frame = +3
Query: 60 VTGAGKGIGRDMVKALHVSGARVVAVTRTNADLVSLSQECPGIE-PVCVDLG---DWEAT 227
V G +GIGR + + + G R+ V R +++ + G + D+ D ++T
Sbjct: 7 VFGGSRGIGRAVARLMAQRGYRLAIVARNLQGARAVAGDLGGDHLALSCDVAKEQDVQST 66
Query: 228 -ERALGGVGPVDLLVNNAAVALMQPFLDTTKEVFDRSFNVNLRSVFQVSQIVARSMIERG 404
E +GPV+ LVN A + + T+ E NL + ++MI++
Sbjct: 67 FEEIEKNLGPVNFLVNAAGINRDNLLVRTSTEDMLCQLQTNLLGSMLTCKAAVKTMIKQQ 126
Query: 405 VPGSIVNVSSMVSHVTYPGLAAYSSTKGAMTMLTKSMAMELGPHKIRVNSVNPTVVLTAM 584
GSIVN+ S+V PG + YS++KG + ++++A E+ KIRVN V P V T M
Sbjct: 127 -GGSIVNIGSVVGLKGNPGQSVYSASKGGLVGFSRALAKEVAKKKIRVNVVAPGFVHTDM 185
Query: 585 GRSVTSDPELARKLKERHPMRKFAEVEDVVNSILFLLSDRSASTSGSSIFVDAG 746
+ + + LK P+ +F + DV +++LFLL S +G ++ VD G
Sbjct: 186 TKDLKEE-----HLKSNIPLGRFGDPLDVAHAVLFLL--ESPYITGHALVVDGG 232
>ref|XP_001925948.1| PREDICTED: 3-ketodihydrosphingosine reductase-like [Sus scrofa].
Length = 332
Score = 72.4 bits (176), Expect = 5e-13
Identities = 58/186 (31%), Positives = 87/186 (46%), Gaps = 13/186 (6%)
Frame = +3
Query: 45 GLRALVTGAGKGIGRDMVKALHVSGARVVAVTRTNADLVSLSQECPG--------IEPVC 200
G +VTG GIG+ + + GA + V R L+ +E + +
Sbjct: 32 GAHVVVTGGSSGIGKCIAIECYKQGAFITLVARNEDKLLQAKKEIEKHSINDKQVVLCIS 91
Query: 201 VDLG-DWEATE----RALGGVGPVDLLVNNAAVALMQPFLDTTKEVFDRSFNVNLRSVFQ 365
VD+ D+ E +A +GPVD+LVN A ++L F D F+R +VN
Sbjct: 92 VDVSQDYSQVENVIKQAQEKLGPVDMLVNCAGMSLSGKFEDLEVSTFERLMSVNYLGSVY 151
Query: 366 VSQIVARSMIERGVPGSIVNVSSMVSHVTYPGLAAYSSTKGAMTMLTKSMAMELGPHKIR 545
S+ V +M ER V G IV VSS + G AYSS+K A+ L +++ ME+ P+ +
Sbjct: 152 PSRAVITTMKERRV-GRIVFVSSQAGQLGLFGFTAYSSSKFAIRGLAEALQMEVKPYNVY 210
Query: 546 VNSVNP 563
V P
Sbjct: 211 VTVAYP 216
>ref|NP_001177161.1| 2,4-dienoyl-CoA reductase, mitochondrial [Sus scrofa].
Length = 328
Score = 68.6 bits (166), Expect = 7e-12
Identities = 58/248 (23%), Positives = 112/248 (45%), Gaps = 12/248 (4%)
Frame = +3
Query: 39 FSGLRALVTGAGKGIGRDMVKALHVSGARVVAVTRTNADLVSL------SQECPGIEPVC 200
F G A +TG G GIG+ M L GA+ V +R N D++ SQ + +
Sbjct: 50 FQGKLAFITGGGTGIGKRMTTHLSSLGAQCVIASR-NIDILKATAEEISSQTGNKVHAIQ 108
Query: 201 VDLGDWEATERALGG----VGPVDLLVNNAAVALMQPFLDTTKEVFDRSFNVNLRSVFQV 368
D+ D + + +G D+++NNAA + P + + ++ L V
Sbjct: 109 CDVRDPNMVQNTVSELIKVIGHPDIVINNAAGNFISPSERLSPNAWKTITDIVLNGTAFV 168
Query: 369 SQIVARSMIERGVPGSIVNVSSMVSHVTYPGLAAYSSTKGAMTMLTKSMAMELGPHKIRV 548
+ + + +I+ + + ++++ + + +S K + ++KS+A E + +R
Sbjct: 169 TLEIGKQLIKAQKGAAFLAITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWSKYGMRF 228
Query: 549 NSVNPTVVLTAMGRSVTSDPELA--RKLKERHPMRKFAEVEDVVNSILFLLSDRSASTSG 722
N + P + T G DP A +++ +R P + VE++ N FL SD ++ +G
Sbjct: 229 NVIQPGPIKT-KGAFSRLDPTGAFEKEMIDRIPCGRLGTVEELANLATFLCSDYASWING 287
Query: 723 SSIFVDAG 746
++I D G
Sbjct: 288 ATIRFDGG 295
>ref|XP_003135175.1| PREDICTED: 3-hydroxyacyl-CoA dehydrogenase type-2-like isoform 2
[Sus scrofa].
Length = 293
Score = 65.5 bits (158), Expect = 6e-11
Identities = 56/189 (29%), Positives = 84/189 (44%), Gaps = 16/189 (8%)
Frame = +3
Query: 45 GLRALVTGAGKGIGRDMVKALHVSGARVVAVTRTNAD----LVSLSQECPGIEPVCVDLG 212
GL A++TG G+G + L GA V + ++D L + C
Sbjct: 42 GLVAIITGGASGLGLATAERLVGQGASAVLLDLPHSDGEAQAKKLGKSCAFAPADVTSEK 101
Query: 213 DWEAT-ERALGGVGPVDLLVNNAAVALMQPFLDTTK------EVFDRSFNVNLRSVFQVS 371
D +A A G VD+ VN A + + + K E F R NVNL F V
Sbjct: 102 DVQAALTLAKEKFGRVDVAVNCAGIGVASKTYNLKKSQAHTLEDFQRVLNVNLTGTFNVI 161
Query: 372 QIVARSMIER-----GVPGSIVNVSSMVSHVTYPGLAAYSSTKGAMTMLTKSMAMELGPH 536
++VA M + G G I+N +S+ + G AAYS++KG + +T +A +L P
Sbjct: 162 RLVAGEMGQNEPDQGGQRGVIINTASIAAFEGQVGQAAYSASKGGIVSMTLPIARDLAPM 221
Query: 537 KIRVNSVNP 563
IRV ++ P
Sbjct: 222 GIRVMTIAP 230
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,194,954
Number of extensions: 615706
Number of successful extensions: 2866
Number of sequences better than 1.0e-05: 37
Number of HSP's gapped: 2826
Number of HSP's successfully gapped: 37
Length of query: 407
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 306
Effective length of database: 8,829,335
Effective search space: 2701776510
Effective search space used: 2701776510
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012724
(1223 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031647.1| carbonyl reductase [NADPH] 2 [Mus musculus]. 416 e-116
Alignment gi|NP_080704.2| L-xylulose reductase [Mus musculus]. 314 1e-85
Alignment gi|NP_038571.2| estradiol 17-beta-dehydrogenase 8 [Mus musculus]. 106 3e-23
Alignment gi|NP_001033027.2| dehydrogenase/reductase SDR family member 4 ... 99 9e-21
Alignment gi|NP_001165526.1| 3-hydroxybutyrate dehydrogenase type 2 isofo... 88 1e-17
Alignment gi|NP_082066.2| dehydrogenase/reductase member 2 [Mus musculus]. 88 1e-17
Alignment gi|NP_081484.1| 3-hydroxybutyrate dehydrogenase type 2 isoform ... 87 3e-17
Alignment gi|NP_079606.3| dehydrogenase/reductase (SDR family) member 10 ... 84 2e-16
Alignment gi|NP_663570.2| carbonyl reductase family member 4 [Mus musculu... 83 5e-16
Alignment gi|NP_808232.2| dehydrogenase/reductase SDR family member 11 pr... 81 2e-15
>ref|NP_031647.1| carbonyl reductase [NADPH] 2 [Mus musculus].
Length = 244
Score = 416 bits (1068), Expect = e-116
Identities = 207/244 (84%), Positives = 228/244 (93%)
Frame = +3
Query: 27 MQMNFSGLRALVTGAGKGIGRDMVKALHVSGARVVAVTRTNADLVSLSQECPGIEPVCVD 206
M++NFSGLRALVTGAGKGIGRD VKALH SGA+VVAVTRTN+DLVSL++ECPGIEPVCVD
Sbjct: 1 MKLNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVD 60
Query: 207 LGDWEATERALGGVGPVDLLVNNAAVALMQPFLDTTKEVFDRSFNVNLRSVFQVSQIVAR 386
LGDW+ATE+ALGG+GPVDLLVNNAA+ +MQPFL+ TKE FDRSF+VNLRSVFQVSQ+VAR
Sbjct: 61 LGDWDATEKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVAR 120
Query: 387 SMIERGVPGSIVNVSSMVSHVTYPGLAAYSSTKGAMTMLTKSMAMELGPHKIRVNSVNPT 566
MI RGVPGSIVNVSSMV+HVT+P L YSSTKGAMTMLTK+MAMELGPHKIRVNSVNPT
Sbjct: 121 DMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPT 180
Query: 567 VVLTAMGRSVTSDPELARKLKERHPMRKFAEVEDVVNSILFLLSDRSASTSGSSIFVDAG 746
VVLT MG+ V++DPE ARKLKERHP+RKFAEVEDVVNSILFLLSDRSASTSG I VDAG
Sbjct: 181 VVLTDMGKKVSADPEFARKLKERHPLRKFAEVEDVVNSILFLLSDRSASTSGGGILVDAG 240
Query: 747 YLAS 758
YLAS
Sbjct: 241 YLAS 244
>ref|NP_080704.2| L-xylulose reductase [Mus musculus].
Length = 244
Score = 314 bits (804), Expect = 1e-85
Identities = 162/244 (66%), Positives = 193/244 (79%)
Frame = +3
Query: 27 MQMNFSGLRALVTGAGKGIGRDMVKALHVSGARVVAVTRTNADLVSLSQECPGIEPVCVD 206
M + +G RALVTGAGKGIGR V AL +GA+VVAV+RT DL L +ECPG+EPVCVD
Sbjct: 1 MDLGLAGRRALVTGAGKGIGRSTVLALKAAGAQVVAVSRTREDLDDLVRECPGVEPVCVD 60
Query: 207 LGDWEATERALGGVGPVDLLVNNAAVALMQPFLDTTKEVFDRSFNVNLRSVFQVSQIVAR 386
L DWEATE+AL VGPVDLLVNNAAVAL+QPFL+ TKE D SFNVNLR+V QVSQIVA+
Sbjct: 61 LADWEATEQALSNVGPVDLLVNNAAVALLQPFLEVTKEACDTSFNVNLRAVIQVSQIVAK 120
Query: 387 SMIERGVPGSIVNVSSMVSHVTYPGLAAYSSTKGAMTMLTKSMAMELGPHKIRVNSVNPT 566
MI RGVPG+IVNVSS S Y STKGA+ MLTK MA+ELGPHKIRVN+VNPT
Sbjct: 121 GMIARGVPGAIVNVSSQASQRALTNHTVYCSTKGALDMLTKMMALELGPHKIRVNAVNPT 180
Query: 567 VVLTAMGRSVTSDPELARKLKERHPMRKFAEVEDVVNSILFLLSDRSASTSGSSIFVDAG 746
VV+T MGR+ SDP A+ + +R P+ KFAEVE+VV++ILFLLS+RS T+GS++ VD G
Sbjct: 181 VVMTPMGRTNWSDPHKAKAMLDRIPLGKFAEVENVVDTILFLLSNRSGMTTGSTLPVDGG 240
Query: 747 YLAS 758
+LA+
Sbjct: 241 FLAT 244
>ref|NP_038571.2| estradiol 17-beta-dehydrogenase 8 [Mus musculus].
Length = 259
Score = 106 bits (265), Expect = 3e-23
Identities = 85/257 (33%), Positives = 124/257 (48%), Gaps = 18/257 (7%)
Frame = +3
Query: 30 QMNFSGLRALVTGAGKGIGRDMVKALHVSGARVVAVTRTNA---DLVSLSQECPGIEPVC 200
Q+ ALVTGAG GIGR + L GA V A A D V L PG E
Sbjct: 4 QLRLRSALALVTGAGSGIGRAISVRLAAEGAAVAACDLDGAAAQDTVRLLGS-PGSEDGA 62
Query: 201 ---------VDLGDWEATERALGGVG-----PVDLLVNNAAVALMQPFLDTTKEVFDRSF 338
D+ A R L V P ++V+ A + + L ++E +DR
Sbjct: 63 PRGKHAAFQADVSQGPAARRLLEEVQACFSRPPSVVVSCAGITRDEFLLHMSEEDWDRVI 122
Query: 339 NVNLRSVFQVSQIVARSMIERGVPGSIVNVSSMVSHVTYPGLAAYSSTKGAMTMLTKSMA 518
VNL+ F V+Q A++++ G GSI+N+SS++ V G Y+S+K + LT++ A
Sbjct: 123 AVNLKGTFLVTQAAAQALVSSGGRGSIINISSIIGKVGNIGQTNYASSKAGVIGLTQTAA 182
Query: 519 MELGPHKIRVNSVNPTVVLTAMGRSVTSDPELAR-KLKERHPMRKFAEVEDVVNSILFLL 695
ELG H IR NSV P + T M + + PE + K+ P+ + EDV + + FL
Sbjct: 183 RELGRHGIRCNSVLPGFIATPMTQKM---PEKVKDKVTAMIPLGHMGDPEDVADVVAFLA 239
Query: 696 SDRSASTSGSSIFVDAG 746
S+ S +G+S+ V G
Sbjct: 240 SEDSGYITGASVEVSGG 256
>ref|NP_001033027.2| dehydrogenase/reductase SDR family member 4 isoform 1 [Mus
musculus].
Length = 279
Score = 98.6 bits (244), Expect = 9e-21
Identities = 75/243 (30%), Positives = 122/243 (50%), Gaps = 12/243 (4%)
Frame = +3
Query: 54 ALVTGAGKGIGRDMVKALHVSGARVVAVTRT--NAD--LVSLSQECPGIEPVCVDLGDWE 221
ALVT + GIG + + L GA VV +R N D + +L E + + +G E
Sbjct: 36 ALVTASTDGIGFAIARRLAEDGAHVVVSSRKQQNVDRAVATLQGEGLSVTGIVCHVGKAE 95
Query: 222 ATER----ALGGVGPVDLLVNNAAVALMQPF----LDTTKEVFDRSFNVNLRSVFQVSQI 377
E+ AL +D+LV+NAAV PF +D T+EV+D+ ++N+ + + +
Sbjct: 96 DREKLITTALKRHQGIDILVSNAAV---NPFFGNLMDVTEEVWDKVLSINVTATAMMIKA 152
Query: 378 VARSMIERGVPGSIVNVSSMVSHVTYPGLAAYSSTKGAMTMLTKSMAMELGPHKIRVNSV 557
V M +RG GS+V V S+ +P L Y+ +K A+ LTK+ A EL P IRVN +
Sbjct: 153 VVPEMEKRG-GGSVVIVGSVAGFTRFPSLGPYNVSKTALLGLTKNFAAELAPKNIRVNCL 211
Query: 558 NPTVVLTAMGRSVTSDPELARKLKERHPMRKFAEVEDVVNSILFLLSDRSASTSGSSIFV 737
P ++ T + + +KE +R+ + ED + FL S+ ++ +G ++ V
Sbjct: 212 APGLIKTRFSSVLWEEKAREDFIKEAMQIRRLGKPEDCAGIVSFLCSEDASYINGETVVV 271
Query: 738 DAG 746
G
Sbjct: 272 GGG 274
>ref|NP_001165526.1| 3-hydroxybutyrate dehydrogenase type 2 isoform 1 [Mus musculus].
Length = 255
Score = 88.2 bits (217), Expect = 1e-17
Identities = 69/248 (27%), Positives = 117/248 (47%), Gaps = 5/248 (2%)
Frame = +3
Query: 21 GTMQMNFSGLRALVTGAGKGIGRDMVKALHVSGARVVAVTRTNADLVSLSQECPGIEPVC 200
G+ G ++T A +GIGR A GA+V+A + L L + GI+
Sbjct: 8 GSTMGRLDGKVIVLTAAAQGIGRASALAFAREGAKVIATDINESKLQEL-ESYRGIQTRV 66
Query: 201 VDLGDWEATERALGGVGPVDLLVNNAAVALMQPFLDTTKEVFDRSFNVNLRSVFQVSQIV 380
+D+ ++ + +D+L N A LD ++ +D S N+N+RS+F + +
Sbjct: 67 LDVTKKRQIDQFASEIERIDVLFNVAGFVHHGTILDCEEKDWDFSMNLNVRSMFLMIKAF 126
Query: 381 ARSMIERGVPGSIVNVSSMVSHVT-YPGLAAYSSTKGAMTMLTKSMAMELGPHKIRVNSV 557
M+ + G+I+N+SS+ S + YS+TK A+ LTKS+A + IR N V
Sbjct: 127 LPKMLAQK-SGNIINMSSVASSIKGVENRCVYSATKAAVIGLTKSVAADFIQQGIRCNCV 185
Query: 558 NPTVV----LTAMGRSVTSDPELARKLKERHPMRKFAEVEDVVNSILFLLSDRSASTSGS 725
P V L ++ + E + R +FA E+V ++L SD SA +G+
Sbjct: 186 CPGTVDTPSLQERIQARDNPKEALKTFLNRQKTGRFASAEEVALLCVYLASDESAYVTGN 245
Query: 726 SIFVDAGY 749
+ +D G+
Sbjct: 246 PVIIDGGW 253
>ref|NP_082066.2| dehydrogenase/reductase member 2 [Mus musculus].
Length = 282
Score = 88.2 bits (217), Expect = 1e-17
Identities = 73/248 (29%), Positives = 128/248 (51%), Gaps = 10/248 (4%)
Frame = +3
Query: 36 NFSGLRALVTGAGKGIGRDMVKALHVSGARVVAVTRT--NAD--LVSLSQECPGIEPVCV 203
+ +G A++TG+ +GIG + + L GA VV +R N D + L +E +
Sbjct: 34 SLAGKVAVITGSTRGIGFAIARRLAQDGAHVVISSRKQENVDEAVTILKEEGLSVTGTMC 93
Query: 204 DLGDWEATER----ALGGVGPVDLLVNNAAV-ALMQPFLDTTKEVFDRSFNVNLRS-VFQ 365
+G E + AL G +D LV A V L+ L +++++D+ +VN++S
Sbjct: 94 HVGKAEDRQHLVTTALKHSGGIDFLVCVAGVNPLVGSTLGASEQIWDKILDVNVKSPALL 153
Query: 366 VSQIVARSMIERGVPGSIVNVSSMVSHVTYPGLAAYSSTKGAMTMLTKSMAMELGPHKIR 545
+S+++ RG GS+V VSS V++V P L Y+++K A+ L KS+A+EL P IR
Sbjct: 154 LSKVLPYMENRRG--GSVVLVSSGVAYVPVPKLGVYNTSKTALLGLCKSLAVELAPKGIR 211
Query: 546 VNSVNPTVVLTAMGRSVTSDPELARKLKERHPMRKFAEVEDVVNSILFLLSDRSASTSGS 725
VN + P ++ T + P + + + +++ E E+ + FL S ++ +G
Sbjct: 212 VNCLVPGIIKTDFSLREKTMPNMLPDMNKIFGVKRLGEPEECAGLVSFLCSSDASYITGE 271
Query: 726 SIFVDAGY 749
+I V AG+
Sbjct: 272 NIMV-AGF 278
>ref|NP_081484.1| 3-hydroxybutyrate dehydrogenase type 2 isoform 2 [Mus musculus].
Length = 245
Score = 87.0 bits (214), Expect = 3e-17
Identities = 67/236 (28%), Positives = 114/236 (48%), Gaps = 5/236 (2%)
Frame = +3
Query: 57 LVTGAGKGIGRDMVKALHVSGARVVAVTRTNADLVSLSQECPGIEPVCVDLGDWEATERA 236
++T A +GIGR A GA+V+A + L L + GI+ +D+ ++
Sbjct: 10 VLTAAAQGIGRASALAFAREGAKVIATDINESKLQEL-ESYRGIQTRVLDVTKKRQIDQF 68
Query: 237 LGGVGPVDLLVNNAAVALMQPFLDTTKEVFDRSFNVNLRSVFQVSQIVARSMIERGVPGS 416
+ +D+L N A LD ++ +D S N+N+RS+F + + M+ + G+
Sbjct: 69 ASEIERIDVLFNVAGFVHHGTILDCEEKDWDFSMNLNVRSMFLMIKAFLPKMLAQK-SGN 127
Query: 417 IVNVSSMVSHVT-YPGLAAYSSTKGAMTMLTKSMAMELGPHKIRVNSVNPTVV----LTA 581
I+N+SS+ S + YS+TK A+ LTKS+A + IR N V P V L
Sbjct: 128 IINMSSVASSIKGVENRCVYSATKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQE 187
Query: 582 MGRSVTSDPELARKLKERHPMRKFAEVEDVVNSILFLLSDRSASTSGSSIFVDAGY 749
++ + E + R +FA E+V ++L SD SA +G+ + +D G+
Sbjct: 188 RIQARDNPKEALKTFLNRQKTGRFASAEEVALLCVYLASDESAYVTGNPVIIDGGW 243
>ref|NP_079606.3| dehydrogenase/reductase (SDR family) member 10 [Mus musculus].
Length = 273
Score = 84.0 bits (206), Expect = 2e-16
Identities = 71/247 (28%), Positives = 121/247 (48%), Gaps = 11/247 (4%)
Frame = +3
Query: 39 FSGLRALVTGAGKGIGRDMVKALHVSGARVVAVTRTNADLVSLSQECPGIEPVCVDLGDW 218
+SG +VTG +GIG +V+A SGA+VV + A +L QE G + D+
Sbjct: 7 YSGKVVVVTGGSRGIGAAIVRAFVDSGAQVVFCDKDEAGGRALEQELSGTVFIPGDVTQE 66
Query: 219 EATE----RALGGVGPVDLLVNNAAV-ALMQPFLDTTKEVFDRSFNVNLRSVFQVSQIVA 383
+ L G +D +VNNA Q +T+ + F + VNL + + ++
Sbjct: 67 RDLQTLVSETLSRFGHLDCVVNNAGYHPPAQLPEETSAQGFRQLLEVNLLGTYTLIKLAL 126
Query: 384 RSMIERGVPGSIVNVSSMVSHVTYPGLAAYSSTKGAMTMLTKSMAMELGPHKIRVNSVNP 563
+ R G+I+N+SS+V + Y +TKGA+T +TK++A++ H +RVN ++P
Sbjct: 127 PHL--RKSRGNIINISSLVGAIGQSQALTYVATKGAVTAMTKALALDESRHGVRVNCISP 184
Query: 564 TVVLTAMGRSV---TSDPE---LARKLKERHPMRKFAEVEDVVNSILFLLSDRSASTSGS 725
+ T + + TSDP L L + P+ + + +V + +FL S+ + T G
Sbjct: 185 GNIWTPLWEELAASTSDPRATILEGTLAQ--PLGRMGQPAEVAAAAVFLASEATFCT-GL 241
Query: 726 SIFVDAG 746
+ V G
Sbjct: 242 ELLVTGG 248
>ref|NP_663570.2| carbonyl reductase family member 4 [Mus musculus].
Length = 236
Score = 82.8 bits (203), Expect = 5e-16
Identities = 67/234 (28%), Positives = 108/234 (46%), Gaps = 5/234 (2%)
Frame = +3
Query: 60 VTGAGKGIGRDMVKALHVSGARVVAVTRTNADLVSLSQECPGIE-----PVCVDLGDWEA 224
V G +GIGR + + + G R+ V+R + E G V +
Sbjct: 7 VFGGSRGIGRAVAQLMAQKGYRLAIVSRNLEVAKVTAGELGGNHLAFRCDVAKEQDVQST 66
Query: 225 TERALGGVGPVDLLVNNAAVALMQPFLDTTKEVFDRSFNVNLRSVFQVSQIVARSMIERG 404
+ +GPV+ LVN A + + T E + NL + ++MI++G
Sbjct: 67 FQEMEKHLGPVNFLVNAAGINRDSLLVRTKTEDMISQLHTNLLGSMLTCKAAMKTMIQQG 126
Query: 405 VPGSIVNVSSMVSHVTYPGLAAYSSTKGAMTMLTKSMAMELGPHKIRVNSVNPTVVLTAM 584
GSIVNV S++ G +AYS+TKG + ++S+A E+ KIRVN V P + T M
Sbjct: 127 --GSIVNVGSIIGLKGNVGQSAYSATKGGLVGFSRSLAKEVARKKIRVNVVAPGFIRTDM 184
Query: 585 GRSVTSDPELARKLKERHPMRKFAEVEDVVNSILFLLSDRSASTSGSSIFVDAG 746
R + + K+ P+ +F E +V ++++FLL S +G + VD G
Sbjct: 185 TRHLKEE-----HFKKNIPLGRFGETLEVAHAVVFLL--ESPYITGHVLIVDGG 231
>ref|NP_808232.2| dehydrogenase/reductase SDR family member 11 precursor [Mus
musculus].
Length = 260
Score = 80.9 bits (198), Expect = 2e-15
Identities = 73/231 (31%), Positives = 110/231 (47%), Gaps = 16/231 (6%)
Frame = +3
Query: 54 ALVTGAGKGIGRDMVKALHVSGARVVAVTRTNADLVSLSQEC-----PG-IEPVCVDLGD 215
ALVTGA GIG + +AL G +VV RT ++ L+ EC PG + P DL +
Sbjct: 14 ALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSN 73
Query: 216 WEATERALGGV----GPVDLLVNNAAVALMQPFLDTTKEVFDRSFNVNLRSVFQVSQIVA 383
E V VD+ +NNA +A L + + FNVN+ ++ ++
Sbjct: 74 EEDILSMFSAVRSQHSGVDICINNAGMARPDTLLSGSTSGWKDMFNVNVLALSICTREAY 133
Query: 384 RSMIERGV-PGSIVNVSSMVSHVTYPG--LAAYSSTKGAMTMLTKSMAMEL--GPHKIRV 548
+SM ER + G I+N++SM H P + YS+TK A+T LT+ + EL IR
Sbjct: 134 QSMKERNIDDGHIININSMCGHRVPPQSVIHFYSATKYAVTALTEGLRQELLEAQTHIRA 193
Query: 549 NSVNPTVVLTAMGRSV-TSDPELARKLKERHPMRKFAEVEDVVNSILFLLS 698
++P +V T + DP A E K EDV +++++LS
Sbjct: 194 TCISPGLVETQFAFKLHDKDPGEAAATYEH---IKCLRPEDVAEAVIYVLS 241
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,018,008
Number of extensions: 715167
Number of successful extensions: 3480
Number of sequences better than 1.0e-05: 44
Number of HSP's gapped: 3425
Number of HSP's successfully gapped: 44
Length of query: 407
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 303
Effective length of database: 12,493,815
Effective search space: 3785625945
Effective search space used: 3785625945
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012724
(1223 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057370.1| L-xylulose reductase isoform 1 [Homo sapiens]. 329 4e-90
Alignment gi|NP_001182147.1| L-xylulose reductase isoform 2 [Homo sapiens]. 320 2e-87
Alignment gi|NP_066284.2| dehydrogenase/reductase SDR family member 4 [Ho... 114 2e-25
Alignment gi|NP_055049.1| estradiol 17-beta-dehydrogenase 8 [Homo sapiens]. 103 3e-22
Alignment gi|NP_005785.1| dehydrogenase/reductase SDR family member 2 iso... 97 4e-20
Alignment gi|NP_001075957.1| putative dehydrogenase/reductase SDR family ... 92 1e-18
Alignment gi|NP_064524.3| 3-hydroxybutyrate dehydrogenase type 2 [Homo sa... 90 4e-18
Alignment gi|NP_057330.2| 17-beta-hydroxysteroid dehydrogenase 14 [Homo s... 88 1e-17
Alignment gi|NP_077284.2| dehydrogenase/reductase SDR family member 11 pr... 86 5e-17
Alignment gi|NP_932349.2| dehydrogenase/reductase SDR family member 4-lik... 78 2e-14
>ref|NP_057370.1| L-xylulose reductase isoform 1 [Homo sapiens].
Length = 244
Score = 329 bits (843), Expect = 4e-90
Identities = 169/243 (69%), Positives = 198/243 (81%)
Frame = +3
Query: 27 MQMNFSGLRALVTGAGKGIGRDMVKALHVSGARVVAVTRTNADLVSLSQECPGIEPVCVD 206
M++ +G R LVTGAGKGIGR V+ALH +GARVVAV+RT ADL SL +ECPGIEPVCVD
Sbjct: 1 MELFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVD 60
Query: 207 LGDWEATERALGGVGPVDLLVNNAAVALMQPFLDTTKEVFDRSFNVNLRSVFQVSQIVAR 386
LGDWEATERALG VGPVDLLVNNAAVAL+QPFL+ TKE FDRSF VNLR+V QVSQIVAR
Sbjct: 61 LGDWEATERALGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVAR 120
Query: 387 SMIERGVPGSIVNVSSMVSHVTYPGLAAYSSTKGAMTMLTKSMAMELGPHKIRVNSVNPT 566
+I RGVPG+IVNVSS S + Y STKGA+ MLTK MA+ELGPHKIRVN+VNPT
Sbjct: 121 GLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPT 180
Query: 567 VVLTAMGRSVTSDPELARKLKERHPMRKFAEVEDVVNSILFLLSDRSASTSGSSIFVDAG 746
VV+T+MG++ SDP A+ + R P+ KFAEVE VVN+ILFLLSDRS T+GS++ V+ G
Sbjct: 181 VVMTSMGQATWSDPHKAKTMLNRIPLGKFAEVEHVVNAILFLLSDRSGMTTGSTLPVEGG 240
Query: 747 YLA 755
+ A
Sbjct: 241 FWA 243
>ref|NP_001182147.1| L-xylulose reductase isoform 2 [Homo sapiens].
Length = 242
Score = 320 bits (820), Expect = 2e-87
Identities = 167/243 (68%), Positives = 196/243 (80%)
Frame = +3
Query: 27 MQMNFSGLRALVTGAGKGIGRDMVKALHVSGARVVAVTRTNADLVSLSQECPGIEPVCVD 206
M++ +G R LVTGAGKG R V+ALH +GARVVAV+RT ADL SL +ECPGIEPVCVD
Sbjct: 1 MELFLAGRRVLVTGAGKG--RGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVD 58
Query: 207 LGDWEATERALGGVGPVDLLVNNAAVALMQPFLDTTKEVFDRSFNVNLRSVFQVSQIVAR 386
LGDWEATERALG VGPVDLLVNNAAVAL+QPFL+ TKE FDRSF VNLR+V QVSQIVAR
Sbjct: 59 LGDWEATERALGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVAR 118
Query: 387 SMIERGVPGSIVNVSSMVSHVTYPGLAAYSSTKGAMTMLTKSMAMELGPHKIRVNSVNPT 566
+I RGVPG+IVNVSS S + Y STKGA+ MLTK MA+ELGPHKIRVN+VNPT
Sbjct: 119 GLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPT 178
Query: 567 VVLTAMGRSVTSDPELARKLKERHPMRKFAEVEDVVNSILFLLSDRSASTSGSSIFVDAG 746
VV+T+MG++ SDP A+ + R P+ KFAEVE VVN+ILFLLSDRS T+GS++ V+ G
Sbjct: 179 VVMTSMGQATWSDPHKAKTMLNRIPLGKFAEVEHVVNAILFLLSDRSGMTTGSTLPVEGG 238
Query: 747 YLA 755
+ A
Sbjct: 239 FWA 241
>ref|NP_066284.2| dehydrogenase/reductase SDR family member 4 [Homo sapiens].
Length = 278
Score = 114 bits (285), Expect = 2e-25
Identities = 80/243 (32%), Positives = 131/243 (53%), Gaps = 12/243 (4%)
Frame = +3
Query: 54 ALVTGAGKGIGRDMVKALHVSGARVVAVTRT--NAD--LVSLSQECPGIEPVCVDLGDWE 221
ALVT + GIG + + L GA VV +R N D + +L E + +G E
Sbjct: 35 ALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVGKAE 94
Query: 222 ATERALGGV----GPVDLLVNNAAVALMQPF----LDTTKEVFDRSFNVNLRSVFQVSQI 377
ER + G +D+LV+NAAV PF +D T+EV+D++ ++N+++ +++
Sbjct: 95 DRERLVATAVKLHGGIDILVSNAAV---NPFFGSIMDVTEEVWDKTLDINVKAPALMTKA 151
Query: 378 VARSMIERGVPGSIVNVSSMVSHVTYPGLAAYSSTKGAMTMLTKSMAMELGPHKIRVNSV 557
V M +RG GS+V VSS+ + PG + Y+ +K A+ LTK++A+EL P IRVN +
Sbjct: 152 VVPEMEKRG-GGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLTKTLAIELAPRNIRVNCL 210
Query: 558 NPTVVLTAMGRSVTSDPELARKLKERHPMRKFAEVEDVVNSILFLLSDRSASTSGSSIFV 737
P ++ T+ R + D E +KE +R+ E ED + FL S+ ++ +G ++ V
Sbjct: 211 APGLIKTSFSRMLWMDKEKEESMKETLRIRRLGEPEDCAGIVSFLCSEDASYITGETVVV 270
Query: 738 DAG 746
G
Sbjct: 271 GGG 273
>ref|NP_055049.1| estradiol 17-beta-dehydrogenase 8 [Homo sapiens].
Length = 261
Score = 103 bits (257), Expect = 3e-22
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 16/256 (6%)
Frame = +3
Query: 27 MQMNFSGLRALVTGAGKGIGRDMVKALHVSGARVVAVTRTNA---DLVSL-----SQECP 182
+Q ALVTGAG GIGR + L GA V A A + V L S+E P
Sbjct: 5 LQNRLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGP 64
Query: 183 ---GIEPVCVDLGDWEATERALGGVG-----PVDLLVNNAAVALMQPFLDTTKEVFDRSF 338
D+ + A L V P ++V+ A + + L +++ +D+
Sbjct: 65 PRGNHAAFQADVSEARAARCLLEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVI 124
Query: 339 NVNLRSVFQVSQIVARSMIERGVPGSIVNVSSMVSHVTYPGLAAYSSTKGAMTMLTKSMA 518
VNL+ F V+Q A++++ G GSI+N+SS+V V G Y+++K + LT++ A
Sbjct: 125 AVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVGNVGQTNYAASKAGVIGLTQTAA 184
Query: 519 MELGPHKIRVNSVNPTVVLTAMGRSVTSDPELARKLKERHPMRKFAEVEDVVNSILFLLS 698
ELG H IR NSV P + T M + V ++ K+ E PM + EDV + + FL S
Sbjct: 185 RELGRHGIRCNSVLPGFIATPMTQKVPQ--KVVDKITEMIPMGHLGDPEDVADVVAFLAS 242
Query: 699 DRSASTSGSSIFVDAG 746
+ S +G+S+ V G
Sbjct: 243 EDSGYITGTSVEVTGG 258
>ref|NP_005785.1| dehydrogenase/reductase SDR family member 2 isoform 2 [Homo
sapiens].
Length = 280
Score = 96.7 bits (239), Expect = 4e-20
Identities = 76/242 (31%), Positives = 126/242 (52%), Gaps = 10/242 (4%)
Frame = +3
Query: 54 ALVTGAGKGIGRDMVKALHVSGARVVAVTRT--NAD--LVSLSQECPGIEPVCVDLGDWE 221
A+VTG+ GIG + + L GA VV +R N D + L E + + +G E
Sbjct: 39 AVVTGSTSGIGFAIARRLARDGAHVVISSRKQQNVDRAMAKLQGEGLSVAGIVCHVGKAE 98
Query: 222 ATE----RALGGVGPVDLLVNNAAV-ALMQPFLDTTKEVFDRSFNVNLRS-VFQVSQIVA 383
E +AL G VD LV +A V L+ L T+++++D+ +VN++S +SQ++
Sbjct: 99 DREQLVAKALEHCGGVDFLVCSAGVNPLVGSTLGTSEQIWDKILSVNVKSPALLLSQLLP 158
Query: 384 RSMIERGVPGSIVNVSSMVSHVTYPGLAAYSSTKGAMTMLTKSMAMELGPHKIRVNSVNP 563
RG +++ VSS+ ++ L Y+ +K A+ LT+++A+EL P IRVN V P
Sbjct: 159 YMENRRG---AVILVSSIAAYNPVVALGVYNVSKTALLGLTRTLALELAPKDIRVNCVVP 215
Query: 564 TVVLTAMGRSVTSDPELARKLKERHPMRKFAEVEDVVNSILFLLSDRSASTSGSSIFVDA 743
++ T + + L + KE H +++ E ED + FL S ++ +G +I V A
Sbjct: 216 GIIKTDFSKVFHGNESLWKNFKEHHQLQRIGESEDCAGIVSFLCSPDASYVNGENIAV-A 274
Query: 744 GY 749
GY
Sbjct: 275 GY 276
>ref|NP_001075957.1| putative dehydrogenase/reductase SDR family member 4-like 2 [Homo
sapiens].
Length = 281
Score = 91.7 bits (226), Expect = 1e-18
Identities = 73/243 (30%), Positives = 122/243 (50%), Gaps = 12/243 (4%)
Frame = +3
Query: 54 ALVTGAGKGIGRDMVKALHVSGARVVAVTRT--NADLVSLSQECPGIE---PVCV--DLG 212
ALVT + IG + + L GA VV R N D + + G+ VC +
Sbjct: 35 ALVTASTDWIGFAVAQRLAQDGAHVVVSRRKQQNVDQAVATLQGEGLSMTGTVCHVGKMK 94
Query: 213 DWE---ATERALGGVGPV-DLLVNNAAVALMQ-PFLDTTKEVFDRSFNVNLRSVFQVSQI 377
DWE AT L GV + L + N+ L L T +E +DR+ ++N +++ + +
Sbjct: 95 DWERLVATAMKLHGVIDILSLSITNSKRGLFWFTLLQTAEEAWDRNLDINGKALALMIKA 154
Query: 378 VARSMIERGVPGSIVNVSSMVSHVTYPGLAAYSSTKGAMTMLTKSMAMELGPHKIRVNSV 557
V M +RG GS+ ++S+ + PG + Y+ +K A+ L K++A+EL P IRVN +
Sbjct: 155 VVPEMEKRG-GGSVGFLASVAAFRPLPGFSPYNVSKTALLGLNKTLAIELAPRNIRVNCL 213
Query: 558 NPTVVLTAMGRSVTSDPELARKLKERHPMRKFAEVEDVVNSILFLLSDRSASTSGSSIFV 737
P ++ T+ R + D E +KE +R+ E ED + + FL S+ ++ +G ++ V
Sbjct: 214 APGLIKTSFSRMLWMDKEKEESMKETLRIRRLGEPEDSLGIVSFLCSEDASYLTGETVMV 273
Query: 738 DAG 746
G
Sbjct: 274 GGG 276
>ref|NP_064524.3| 3-hydroxybutyrate dehydrogenase type 2 [Homo sapiens].
Length = 245
Score = 90.1 bits (222), Expect = 4e-18
Identities = 70/236 (29%), Positives = 119/236 (50%), Gaps = 5/236 (2%)
Frame = +3
Query: 57 LVTGAGKGIGRDMVKALHVSGARVVAVTRTNADLVSLSQECPGIEPVCVDLGDWEATERA 236
++T A +GIG+ A GA+V+A + L L ++ PGI+ +D+ + ++
Sbjct: 10 ILTAAAQGIGQAAALAFAREGAKVIATDINESKLQEL-EKYPGIQTRVLDVTKKKQIDQF 68
Query: 237 LGGVGPVDLLVNNAAVALMQPFLDTTKEVFDRSFNVNLRSVFQVSQIVARSMIERGVPGS 416
V +D+L N A LD ++ +D S N+N+RS++ + + M+ + G+
Sbjct: 69 ANEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQK-SGN 127
Query: 417 IVNVSSMVSHVT-YPGLAAYSSTKGAMTMLTKSMAMELGPHKIRVNSVNPTVVLTAMGRS 593
I+N+SS+ S V YS+TK A+ LTKS+A + IR N V P V T +
Sbjct: 128 IINMSSVASSVKGVVNRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQE 187
Query: 594 ---VTSDPELARK-LKERHPMRKFAEVEDVVNSILFLLSDRSASTSGSSIFVDAGY 749
+PE AR +R +FA E++ ++L SD SA +G+ + +D G+
Sbjct: 188 RIQARGNPEEARNDFLKRQKTGRFATAEEIAMLCVYLASDESAYVTGNPVIIDGGW 243
>ref|NP_057330.2| 17-beta-hydroxysteroid dehydrogenase 14 [Homo sapiens].
Length = 270
Score = 88.2 bits (217), Expect = 1e-17
Identities = 66/245 (26%), Positives = 124/245 (50%), Gaps = 9/245 (3%)
Frame = +3
Query: 39 FSGLRALVTGAGKGIGRDMVKALHVSGARVVAVTRTNADLVSLSQECPGIEPVCVDLGDW 218
++G +VTG G+GIG +V+A SGARVV + + +L QE PG + D+
Sbjct: 7 YAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVFILCDVTQE 66
Query: 219 EATERALGGV----GPVDLLVNNAAV-ALMQPFLDTTKEVFDRSFNVNLRSVFQVSQIVA 383
+ + + G +D +VNNA Q +T+ + F + +NL + ++++
Sbjct: 67 DDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLAL 126
Query: 384 RSMIERGVPGSIVNVSSMVSHVTYPGLAAYSSTKGAMTMLTKSMAMELGPHKIRVNSVNP 563
+ R G+++N+SS+V + Y +TKGA+T +TK++A++ P+ +RVN ++P
Sbjct: 127 PYL--RKSQGNVINISSLVGAIGQAQAVPYVATKGAVTAMTKALALDESPYGVRVNCISP 184
Query: 564 TVVLTAMGRSVTS---DPELA-RKLKERHPMRKFAEVEDVVNSILFLLSDRSASTSGSSI 731
+ T + + + DP R+ P+ + + +V + +FL S+ + T G +
Sbjct: 185 GNIWTPLWEELAALMPDPRATIREGMLAQPLGRMGQPAEVGAAAVFLASEANFCT-GIEL 243
Query: 732 FVDAG 746
V G
Sbjct: 244 LVTGG 248
>ref|NP_077284.2| dehydrogenase/reductase SDR family member 11 precursor [Homo
sapiens].
Length = 260
Score = 86.3 bits (212), Expect = 5e-17
Identities = 75/231 (32%), Positives = 112/231 (48%), Gaps = 16/231 (6%)
Frame = +3
Query: 54 ALVTGAGKGIGRDMVKALHVSGARVVAVTRTNADLVSLSQEC-----PG-IEPVCVDLGD 215
ALVTGA GIG + +AL G +VV RT ++ L+ EC PG + P DL +
Sbjct: 14 ALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSN 73
Query: 216 WEATERALGGV----GPVDLLVNNAAVALMQPFLDTTKEVFDRSFNVNLRSVFQVSQIVA 383
E + VD+ +NNA +A L + + FNVN+ ++ ++
Sbjct: 74 EEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAY 133
Query: 384 RSMIERGV-PGSIVNVSSMVSHVTYPGLAA--YSSTKGAMTMLTKSMAMEL--GPHKIRV 548
+SM ER V G I+N++SM H P YS+TK A+T LT+ + EL IR
Sbjct: 134 QSMKERNVDDGHIININSMSGHRVLPLSVTHFYSATKYAVTALTEGLRQELREAQTHIRA 193
Query: 549 NSVNPTVVLTAMGRSV-TSDPELARKLKERHPMRKFAEVEDVVNSILFLLS 698
++P VV T + DPE A E+ K + EDV +++++LS
Sbjct: 194 TCISPGVVETQFAFKLHDKDPEKAAATYEQ---MKCLKPEDVAEAVIYVLS 241
>ref|NP_932349.2| dehydrogenase/reductase SDR family member 4-like 2 isoform 1
precursor [Homo sapiens].
Length = 232
Score = 77.8 bits (190), Expect = 2e-14
Identities = 60/181 (33%), Positives = 98/181 (54%), Gaps = 12/181 (6%)
Frame = +3
Query: 54 ALVTGAGKGIGRDMVKALHVSGARVVAVTRT--NAD--LVSLSQECPGIEPVCVDLGDWE 221
ALVT + GIG + + L A VV +R N D + +L E + +G E
Sbjct: 35 ALVTASTDGIGFAIARRLAQDRAHVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVGKAE 94
Query: 222 ATERALGGV----GPVDLLVNNAAVALMQPF----LDTTKEVFDRSFNVNLRSVFQVSQI 377
ER + G +D+LV+NAAV PF +D T+EV+D++ ++N+++ +++
Sbjct: 95 DRERLVAMAVKLHGGIDILVSNAAV---NPFFGSLMDVTEEVWDKTLDINVKAPALMTKA 151
Query: 378 VARSMIERGVPGSIVNVSSMVSHVTYPGLAAYSSTKGAMTMLTKSMAMELGPHKIRVNSV 557
V M +RG GS+V VSS+ + PG + Y+ +K A+ L ++A+EL P IRVN +
Sbjct: 152 VVPEMEKRG-GGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLNNTLAIELAPRNIRVNCL 210
Query: 558 N 560
+
Sbjct: 211 H 211
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,927,875
Number of extensions: 875935
Number of successful extensions: 4221
Number of sequences better than 1.0e-05: 46
Number of HSP's gapped: 4167
Number of HSP's successfully gapped: 46
Length of query: 407
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 302
Effective length of database: 14,835,944
Effective search space: 4480455088
Effective search space used: 4480455088
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012724
(1223 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896156.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 208 5e-51
gb|GL896210.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 143 3e-31
>gb|GL896156.1| Sus scrofa unplaced genomic scaffold chrU_scaffold524
Length = 398
Score = 208 bits (105), Expect = 5e-51
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 371 ccagatcgtggcccggagcatgatcgaacgcggagtgcctggctccattgtcaatgtctc 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37 ccagatcgtggcccggagcatgatcgaacgcggagtgcctggctccattgtcaatgtctc 96
Query: 431 cagcatggtgtcccatgtcacctaccccggcctagctgcctacag 475
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97 cagcatggtgtcccatgtcacctaccccggcctagctgcctacag 141
Score = 117 bits (59), Expect = 1e-23
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 481 ccaagggcgccatgaccatgctgaccaaatccatggccatggagctggggccacacaag 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ccaagggcgccatgaccatgctgaccaaatccatggccatggagctggggccacacaag 394
>gb|GL896210.1| Sus scrofa unplaced genomic scaffold chrU_scaffold573
Length = 15661
Score = 143 bits (72), Expect = 3e-31
Identities = 72/72 (100%)
Strand = Plus / Minus
Query: 1 tgggagagaggctcgacattggcaccatgcagatgaatttcagtggtctccgggccctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4219 tgggagagaggctcgacattggcaccatgcagatgaatttcagtggtctccgggccctgg 4160
Query: 61 tgacgggggcag 72
||||||||||||
Sbjct: 4159 tgacgggggcag 4148
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 22,726,939
Number of extensions: 179
Number of successful extensions: 179
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 3
Length of query: 1223
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1202
Effective length of database: 2,808,413,156
Effective search space: 3375712613512
Effective search space used: 3375712613512
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)