Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012732
(2817 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_545401.2| PREDICTED: similar to H2B histone family, membe... 179 1e-44
Alignment gi|XP_853817.1| PREDICTED: similar to H2B histone family, membe... 178 3e-44
Alignment gi|XP_540291.1| PREDICTED: similar to H2B histone family, membe... 178 3e-44
Alignment gi|XP_540287.1| PREDICTED: similar to H2B histone family, membe... 178 3e-44
Alignment gi|XP_849728.1| PREDICTED: similar to H2B histone family, membe... 178 3e-44
Alignment gi|XP_859592.1| PREDICTED: similar to H2B histone family, membe... 178 3e-44
Alignment gi|XP_540288.1| PREDICTED: similar to H2B histone family, membe... 178 3e-44
Alignment gi|XP_535910.1| PREDICTED: similar to Histone H2B 291B isoform ... 177 4e-44
Alignment gi|XP_848229.1| PREDICTED: similar to Histone H2B 291B isoform ... 177 4e-44
Alignment gi|XP_854244.1| PREDICTED: similar to Histone H2B 291B [Canis f... 177 4e-44
>ref|XP_545401.2| PREDICTED: similar to H2B histone family, member F [Canis
familiaris].
Length = 170
Score = 179 bits (454), Expect = 1e-44
Identities = 94/108 (87%), Positives = 97/108 (89%)
Frame = +2
Query: 149 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 328
ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 59 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 118
Query: 329 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK*VPAGTWRSLESPCRLT 472
QTAVRLLLPGELAKHAVSEGTKAVTKYTS K P + L++ R T
Sbjct: 119 QTAVRLLLPGELAKHAVSEGTKAVTKYTSFKQTPVQLRQRLQALLRAT 166
>ref|XP_853817.1| PREDICTED: similar to H2B histone family, member F [Canis
familiaris].
Length = 126
Score = 178 bits (451), Expect = 3e-44
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +2
Query: 149 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 328
ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 329 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 421
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_540291.1| PREDICTED: similar to H2B histone family, member F [Canis
familiaris].
Length = 126
Score = 178 bits (451), Expect = 3e-44
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +2
Query: 149 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 328
ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 329 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 421
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_540287.1| PREDICTED: similar to H2B histone family, member F isoform 1 [Canis
familiaris].
Length = 126
Score = 178 bits (451), Expect = 3e-44
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +2
Query: 149 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 328
ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 329 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 421
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_849728.1| PREDICTED: similar to H2B histone family, member F isoform 2 [Canis
familiaris].
Length = 126
Score = 178 bits (451), Expect = 3e-44
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +2
Query: 149 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 328
ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 329 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 421
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_859592.1| PREDICTED: similar to H2B histone family, member F isoform 5 [Canis
familiaris].
Length = 126
Score = 178 bits (451), Expect = 3e-44
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +2
Query: 149 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 328
ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 329 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 421
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_540288.1| PREDICTED: similar to H2B histone family, member F isoform 4 [Canis
familiaris].
Length = 126
Score = 178 bits (451), Expect = 3e-44
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +2
Query: 149 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 328
ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 329 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 421
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_535910.1| PREDICTED: similar to Histone H2B 291B isoform 1 [Canis
familiaris].
Length = 126
Score = 177 bits (450), Expect = 4e-44
Identities = 90/91 (98%), Positives = 91/91 (100%)
Frame = +2
Query: 149 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 328
ESYS+YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 329 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 421
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_848229.1| PREDICTED: similar to Histone H2B 291B isoform 2 [Canis
familiaris].
Length = 126
Score = 177 bits (450), Expect = 4e-44
Identities = 90/91 (98%), Positives = 91/91 (100%)
Frame = +2
Query: 149 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 328
ESYS+YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 329 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 421
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_854244.1| PREDICTED: similar to Histone H2B 291B [Canis familiaris].
Length = 126
Score = 177 bits (450), Expect = 4e-44
Identities = 90/91 (98%), Positives = 91/91 (100%)
Frame = +2
Query: 149 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 328
ESYS+YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 329 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 421
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 81,567,780
Number of extensions: 1870253
Number of successful extensions: 5694
Number of sequences better than 1.0e-05: 40
Number of HSP's gapped: 5689
Number of HSP's successfully gapped: 41
Length of query: 939
Length of database: 18,874,504
Length adjustment: 112
Effective length of query: 827
Effective length of database: 15,140,872
Effective search space: 12521501144
Effective search space used: 12521501144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012732
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012732
(2817 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092854.1| histone cluster 2, H2be [Bos taurus]. 178 3e-44
Alignment gi|NP_001032546.1| histone H2B type 1 [Bos taurus]. 177 3e-44
Alignment gi|NP_001039711.1| histone 1, H2bi [Bos taurus]. 177 3e-44
Alignment gi|XP_002697566.1| PREDICTED: histone cluster 1, H2bd-like [Bos... 177 3e-44
Alignment gi|XP_002697563.1| PREDICTED: histone cluster 1, H2bd-like [Bos... 177 3e-44
Alignment gi|XP_002697561.1| PREDICTED: histone cluster 1, H2bd-like [Bos... 177 3e-44
Alignment gi|XP_002697553.1| PREDICTED: histone cluster 1, H2bd-like [Bos... 177 3e-44
Alignment gi|XP_002697550.1| PREDICTED: histone cluster 1, H2bd-like [Bos... 177 3e-44
Alignment gi|XP_002697520.1| PREDICTED: histone cluster 1, H2bd-like [Bos... 177 3e-44
Alignment gi|XP_002697517.1| PREDICTED: histone H2B-like [Bos taurus]. 177 3e-44
>ref|NP_001092854.1| histone cluster 2, H2be [Bos taurus].
Length = 126
Score = 178 bits (451), Expect = 3e-44
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +2
Query: 149 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 328
ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 329 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 421
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_001032546.1| histone H2B type 1 [Bos taurus].
Length = 126
Score = 177 bits (450), Expect = 3e-44
Identities = 90/91 (98%), Positives = 91/91 (100%)
Frame = +2
Query: 149 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 328
ESYS+YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 329 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 421
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_001039711.1| histone 1, H2bi [Bos taurus].
Length = 126
Score = 177 bits (450), Expect = 3e-44
Identities = 90/91 (98%), Positives = 91/91 (100%)
Frame = +2
Query: 149 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 328
ESYS+YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 329 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 421
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_002697566.1| PREDICTED: histone cluster 1, H2bd-like [Bos taurus].
Length = 126
Score = 177 bits (450), Expect = 3e-44
Identities = 90/91 (98%), Positives = 91/91 (100%)
Frame = +2
Query: 149 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 328
ESYS+YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 329 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 421
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_002697563.1| PREDICTED: histone cluster 1, H2bd-like [Bos taurus].
Length = 126
Score = 177 bits (450), Expect = 3e-44
Identities = 90/91 (98%), Positives = 91/91 (100%)
Frame = +2
Query: 149 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 328
ESYS+YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 329 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 421
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_002697561.1| PREDICTED: histone cluster 1, H2bd-like [Bos taurus].
Length = 126
Score = 177 bits (450), Expect = 3e-44
Identities = 90/91 (98%), Positives = 91/91 (100%)
Frame = +2
Query: 149 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 328
ESYS+YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 329 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 421
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_002697553.1| PREDICTED: histone cluster 1, H2bd-like [Bos taurus].
Length = 126
Score = 177 bits (450), Expect = 3e-44
Identities = 90/91 (98%), Positives = 91/91 (100%)
Frame = +2
Query: 149 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 328
ESYS+YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 329 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 421
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_002697550.1| PREDICTED: histone cluster 1, H2bd-like [Bos taurus].
Length = 126
Score = 177 bits (450), Expect = 3e-44
Identities = 90/91 (98%), Positives = 91/91 (100%)
Frame = +2
Query: 149 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 328
ESYS+YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 329 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 421
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_002697520.1| PREDICTED: histone cluster 1, H2bd-like [Bos taurus].
Length = 126
Score = 177 bits (450), Expect = 3e-44
Identities = 90/91 (98%), Positives = 91/91 (100%)
Frame = +2
Query: 149 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 328
ESYS+YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 329 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 421
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_002697517.1| PREDICTED: histone H2B-like [Bos taurus].
Length = 126
Score = 177 bits (450), Expect = 3e-44
Identities = 90/91 (98%), Positives = 91/91 (100%)
Frame = +2
Query: 149 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 328
ESYS+YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 329 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 421
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 80,567,534
Number of extensions: 2261110
Number of successful extensions: 6212
Number of sequences better than 1.0e-05: 149
Number of HSP's gapped: 6200
Number of HSP's successfully gapped: 152
Length of query: 939
Length of database: 17,681,374
Length adjustment: 112
Effective length of query: 827
Effective length of database: 13,975,518
Effective search space: 11557753386
Effective search space used: 11557753386
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012732
(2817 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003356600.1| PREDICTED: histone H2B type 1-B-like [Sus sc... 178 2e-44
Alignment gi|XP_001926462.1| PREDICTED: histone H2B type 1-B-like [Sus sc... 178 2e-44
Alignment gi|XP_003355261.1| PREDICTED: histone H2B type 1-N-like [Sus sc... 178 2e-44
Alignment gi|XP_003355253.1| PREDICTED: histone H2B type 2-E-like [Sus sc... 178 2e-44
Alignment gi|XP_003356626.1| PREDICTED: histone H2B type 1-H-like [Sus sc... 177 2e-44
Alignment gi|XP_003356620.1| PREDICTED: histone H2B type 1-like [Sus scro... 177 2e-44
Alignment gi|XP_003356619.1| PREDICTED: histone H2B type 1-N-like [Sus sc... 177 2e-44
Alignment gi|XP_003356617.1| PREDICTED: histone H2B type 1-N-like [Sus sc... 177 2e-44
Alignment gi|XP_003356615.1| PREDICTED: histone H2B type 1-like [Sus scro... 177 2e-44
Alignment gi|XP_001928584.1| PREDICTED: histone H2B type 1-H-like [Sus sc... 177 2e-44
>ref|XP_003356600.1| PREDICTED: histone H2B type 1-B-like [Sus scrofa].
Length = 126
Score = 178 bits (451), Expect = 2e-44
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +2
Query: 149 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 328
ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 329 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 421
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_001926462.1| PREDICTED: histone H2B type 1-B-like [Sus scrofa].
Length = 126
Score = 178 bits (451), Expect = 2e-44
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +2
Query: 149 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 328
ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 329 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 421
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_003355261.1| PREDICTED: histone H2B type 1-N-like [Sus scrofa].
Length = 139
Score = 178 bits (451), Expect = 2e-44
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +2
Query: 149 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 328
ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 49 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 108
Query: 329 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 421
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 109 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 139
>ref|XP_003355253.1| PREDICTED: histone H2B type 2-E-like [Sus scrofa].
Length = 126
Score = 178 bits (451), Expect = 2e-44
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +2
Query: 149 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 328
ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 329 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 421
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_003356626.1| PREDICTED: histone H2B type 1-H-like [Sus scrofa].
Length = 126
Score = 177 bits (450), Expect = 2e-44
Identities = 90/91 (98%), Positives = 91/91 (100%)
Frame = +2
Query: 149 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 328
ESYS+YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 329 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 421
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_003356620.1| PREDICTED: histone H2B type 1-like [Sus scrofa].
Length = 126
Score = 177 bits (450), Expect = 2e-44
Identities = 90/91 (98%), Positives = 91/91 (100%)
Frame = +2
Query: 149 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 328
ESYS+YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 329 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 421
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_003356619.1| PREDICTED: histone H2B type 1-N-like [Sus scrofa].
Length = 126
Score = 177 bits (450), Expect = 2e-44
Identities = 90/91 (98%), Positives = 91/91 (100%)
Frame = +2
Query: 149 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 328
ESYS+YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 329 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 421
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_003356617.1| PREDICTED: histone H2B type 1-N-like [Sus scrofa].
Length = 126
Score = 177 bits (450), Expect = 2e-44
Identities = 90/91 (98%), Positives = 91/91 (100%)
Frame = +2
Query: 149 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 328
ESYS+YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 329 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 421
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_003356615.1| PREDICTED: histone H2B type 1-like [Sus scrofa].
Length = 126
Score = 177 bits (450), Expect = 2e-44
Identities = 90/91 (98%), Positives = 91/91 (100%)
Frame = +2
Query: 149 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 328
ESYS+YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 329 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 421
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|XP_001928584.1| PREDICTED: histone H2B type 1-H-like [Sus scrofa].
Length = 126
Score = 177 bits (450), Expect = 2e-44
Identities = 90/91 (98%), Positives = 91/91 (100%)
Frame = +2
Query: 149 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 328
ESYS+YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 329 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 421
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 55,837,156
Number of extensions: 2132965
Number of successful extensions: 3784
Number of sequences better than 1.0e-05: 32
Number of HSP's gapped: 3782
Number of HSP's successfully gapped: 32
Length of query: 939
Length of database: 11,343,932
Length adjustment: 108
Effective length of query: 831
Effective length of database: 8,655,056
Effective search space: 7192351536
Effective search space used: 7192351536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012732
(2817 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_835503.1| histone H2B type 1-C/E/G [Mus musculus]. 177 3e-44
Alignment gi|NP_001171124.1| histone H2B type 1-C/E/G [Mus musculus]. 177 3e-44
Alignment gi|NP_783597.2| histone H2B type 2-B [Mus musculus]. 177 3e-44
Alignment gi|NP_835501.1| histone H2B type 1-C/E/G [Mus musculus]. 177 3e-44
Alignment gi|NP_075911.2| histone H2B type 1-C/E/G [Mus musculus]. 177 3e-44
Alignment gi|NP_835507.1| histone H2B type 1-M [Mus musculus]. 177 3e-44
Alignment gi|NP_835504.1| histone H2B type 1-H [Mus musculus]. 177 3e-44
Alignment gi|NP_835509.2| histone H2B type 1-P [Mus musculus]. 175 2e-43
Alignment gi|NP_783595.1| histone H2B type 1-B [Mus musculus]. 175 2e-43
Alignment gi|NP_835506.1| histone H2B type 1-F/J/L [Mus musculus]. 175 2e-43
>ref|NP_835503.1| histone H2B type 1-C/E/G [Mus musculus].
Length = 126
Score = 177 bits (450), Expect = 3e-44
Identities = 90/91 (98%), Positives = 91/91 (100%)
Frame = +2
Query: 149 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 328
ESYS+YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 329 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 421
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_001171124.1| histone H2B type 1-C/E/G [Mus musculus].
Length = 126
Score = 177 bits (450), Expect = 3e-44
Identities = 90/91 (98%), Positives = 91/91 (100%)
Frame = +2
Query: 149 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 328
ESYS+YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 329 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 421
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_783597.2| histone H2B type 2-B [Mus musculus].
Length = 126
Score = 177 bits (450), Expect = 3e-44
Identities = 90/91 (98%), Positives = 91/91 (100%)
Frame = +2
Query: 149 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 328
ESYS+YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 329 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 421
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_835501.1| histone H2B type 1-C/E/G [Mus musculus].
Length = 126
Score = 177 bits (450), Expect = 3e-44
Identities = 90/91 (98%), Positives = 91/91 (100%)
Frame = +2
Query: 149 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 328
ESYS+YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 329 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 421
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_075911.2| histone H2B type 1-C/E/G [Mus musculus].
Length = 126
Score = 177 bits (450), Expect = 3e-44
Identities = 90/91 (98%), Positives = 91/91 (100%)
Frame = +2
Query: 149 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 328
ESYS+YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 329 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 421
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_835507.1| histone H2B type 1-M [Mus musculus].
Length = 126
Score = 177 bits (450), Expect = 3e-44
Identities = 90/91 (98%), Positives = 91/91 (100%)
Frame = +2
Query: 149 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 328
ESYS+YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 329 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 421
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_835504.1| histone H2B type 1-H [Mus musculus].
Length = 126
Score = 177 bits (450), Expect = 3e-44
Identities = 90/91 (98%), Positives = 91/91 (100%)
Frame = +2
Query: 149 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 328
ESYS+YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 329 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 421
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_835509.2| histone H2B type 1-P [Mus musculus].
Length = 138
Score = 175 bits (444), Expect = 2e-43
Identities = 89/91 (97%), Positives = 90/91 (98%)
Frame = +2
Query: 149 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 328
ESYS+YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIA EASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREI 95
Query: 329 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 421
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_783595.1| histone H2B type 1-B [Mus musculus].
Length = 126
Score = 175 bits (444), Expect = 2e-43
Identities = 89/91 (97%), Positives = 90/91 (98%)
Frame = +2
Query: 149 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 328
ESYS+YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIA EASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREI 95
Query: 329 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 421
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_835506.1| histone H2B type 1-F/J/L [Mus musculus].
Length = 126
Score = 175 bits (444), Expect = 2e-43
Identities = 89/91 (97%), Positives = 90/91 (98%)
Frame = +2
Query: 149 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 328
ESYS+YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIA EASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREI 95
Query: 329 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 421
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 68,609,704
Number of extensions: 1573388
Number of successful extensions: 5069
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 5063
Number of HSP's successfully gapped: 22
Length of query: 939
Length of database: 15,617,559
Length adjustment: 111
Effective length of query: 828
Effective length of database: 12,283,563
Effective search space: 10170790164
Effective search space used: 10170790164
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012732
(2817 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001154806.1| histone H2B type 2-F isoform b [Homo sapiens]. 179 1e-44
Alignment gi|NP_003519.1| histone H2B type 2-E [Homo sapiens]. 178 3e-44
Alignment gi|NP_066406.1| histone H2B type 1-B [Homo sapiens]. 178 3e-44
Alignment gi|NP_003518.2| histone H2B type 1-O [Homo sapiens]. 178 3e-44
Alignment gi|NP_001019770.1| histone H2B type 2-F isoform a [Homo sapiens]. 177 4e-44
Alignment gi|NP_003513.1| histone H2B type 1-C/E/F/G/I [Homo sapiens]. 177 4e-44
Alignment gi|NP_003512.1| histone H2B type 1-M [Homo sapiens]. 177 4e-44
Alignment gi|NP_003511.1| histone H2B type 1-N [Homo sapiens]. 177 4e-44
Alignment gi|NP_003509.1| histone H2B type 1-C/E/F/G/I [Homo sapiens]. 177 4e-44
Alignment gi|NP_619790.1| histone H2B type 1-D [Homo sapiens]. 177 4e-44
>ref|NP_001154806.1| histone H2B type 2-F isoform b [Homo sapiens].
Length = 134
Score = 179 bits (454), Expect = 1e-44
Identities = 91/99 (91%), Positives = 94/99 (94%)
Frame = +2
Query: 149 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 328
ESYS+YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 329 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK*VPAGTWR 445
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK + W+
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSKLIGPILWK 134
>ref|NP_003519.1| histone H2B type 2-E [Homo sapiens].
Length = 126
Score = 178 bits (451), Expect = 3e-44
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +2
Query: 149 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 328
ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 329 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 421
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_066406.1| histone H2B type 1-B [Homo sapiens].
Length = 126
Score = 178 bits (451), Expect = 3e-44
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +2
Query: 149 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 328
ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 329 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 421
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_003518.2| histone H2B type 1-O [Homo sapiens].
Length = 126
Score = 178 bits (451), Expect = 3e-44
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = +2
Query: 149 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 328
ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 329 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 421
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_001019770.1| histone H2B type 2-F isoform a [Homo sapiens].
Length = 126
Score = 177 bits (450), Expect = 4e-44
Identities = 90/91 (98%), Positives = 91/91 (100%)
Frame = +2
Query: 149 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 328
ESYS+YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 329 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 421
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_003513.1| histone H2B type 1-C/E/F/G/I [Homo sapiens].
Length = 126
Score = 177 bits (450), Expect = 4e-44
Identities = 90/91 (98%), Positives = 91/91 (100%)
Frame = +2
Query: 149 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 328
ESYS+YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 329 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 421
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_003512.1| histone H2B type 1-M [Homo sapiens].
Length = 126
Score = 177 bits (450), Expect = 4e-44
Identities = 90/91 (98%), Positives = 91/91 (100%)
Frame = +2
Query: 149 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 328
ESYS+YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 329 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 421
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_003511.1| histone H2B type 1-N [Homo sapiens].
Length = 126
Score = 177 bits (450), Expect = 4e-44
Identities = 90/91 (98%), Positives = 91/91 (100%)
Frame = +2
Query: 149 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 328
ESYS+YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 329 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 421
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_003509.1| histone H2B type 1-C/E/F/G/I [Homo sapiens].
Length = 126
Score = 177 bits (450), Expect = 4e-44
Identities = 90/91 (98%), Positives = 91/91 (100%)
Frame = +2
Query: 149 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 328
ESYS+YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 329 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 421
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
>ref|NP_619790.1| histone H2B type 1-D [Homo sapiens].
Length = 126
Score = 177 bits (450), Expect = 4e-44
Identities = 90/91 (98%), Positives = 91/91 (100%)
Frame = +2
Query: 149 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 328
ESYS+YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI
Sbjct: 36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 329 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 421
QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 126
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 80,139,587
Number of extensions: 1821806
Number of successful extensions: 5779
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 5778
Number of HSP's successfully gapped: 22
Length of query: 939
Length of database: 18,297,164
Length adjustment: 112
Effective length of query: 827
Effective length of database: 14,605,196
Effective search space: 12078497092
Effective search space used: 12078497092
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012732
(2817 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 2187 0.0
Sscrofa_Chr07 507 e-140
gb|GL896509.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 299 4e-78
Sscrofa_Chr14 226 5e-56
Sscrofa_Chr18 143 6e-31
Sscrofa_ChrX 133 6e-28
gb|GL896030.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 115 1e-22
gb|GL893849.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 100 8e-18
Sscrofa_Chr06 68 3e-08
>Sscrofa_Chr04
|| Length = 143465943
Score = 2187 bits (1103), Expect = 0.0
Identities = 1106/1107 (99%)
Strand = Plus / Minus
Query: 8 acttcttttctttgctaaacggtgttgtgttccacaatgcctgagccagcaaaatctgct 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108549888 acttcttttctttgctaaacggtgttgtgttccacaatgcctgagccagcaaaatctgct 108549829
Query: 68 cccgcgcccaagaagggctcgaagaaagccgtcaccaaagcccagaagaaggacggcaag 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108549828 cccgcgcccaagaagggctcgaagaaagccgtcaccaaagcccagaagaaggacggcaag 108549769
Query: 128 aagcggaagcgcagccgcaaggagagctattccatctacgtgtacaaggtgctgaagcag 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108549768 aagcggaagcgcagccgcaaggagagctattccatctacgtgtacaaggtgctgaagcag 108549709
Query: 188 gtgcacccggacacgggcatctcgtccaaggccatgggcatcatgaactccttcgtcaac 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108549708 gtgcacccggacacgggcatctcgtccaaggccatgggcatcatgaactccttcgtcaac 108549649
Query: 248 gacatcttcgagcgcatcgcgggcgaagcgtcccgcctggctcattacaacaagcgctcg 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108549648 gacatcttcgagcgcatcgcgggcgaagcgtcccgcctggctcattacaacaagcgctcg 108549589
Query: 308 accatcacgtcccgggagatccagacggccgtgcgcctgctgctgcccggcgagctggcc 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108549588 accatcacgtcccgggagatccagacggccgtgcgcctgctgctgcccggcgagctggcc 108549529
Query: 368 aagcacgccgtatccgagggcaccaaggcagtcaccaagtacaccagctccaagtgagtc 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108549528 aagcacgccgtatccgagggcaccaaggcagtcaccaagtacaccagctccaagtgagtc 108549469
Query: 428 cctgccgggacgtggcgctcgctcgagtcgccgtgccgcttgactccaaaaggctctttt 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108549468 cctgccgggacgtggcgctcgctcgagtcgccgtgccgcttgactccaaaaggctctttt 108549409
Query: 488 cagagccacccacctagtcaccagaaaagagctttgttcacttgttttccctcttagttc 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108549408 cagagccacccacctagtcaccagaaaagagctttgttcacttgttttccctcttagttc 108549349
Query: 548 cttctcacaaagtaagttctagttggttaaaaaggtcttgtaagaaggcattcgtacctt 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108549348 cttctcacaaagtaagttctagttggttaaaaaggtcttgtaagaaggcattcgtacctt 108549289
Query: 608 tttaagctcttccgacttgaggtttctggtgcgtgattggctttgcttttgaatgtaggg 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108549288 tttaagctcttccgacttgaggtttctggtgcgtgattggctttgcttttgaatgtaggg 108549229
Query: 668 cgcgtcttaactccctttctgggctgcttagctttactatgagtcagttctaaattagga 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108549228 cgcgtcttaactccctttctgggctgcttagctttactatgagtcagttctaaattagga 108549169
Query: 728 tattgagactgctcctcccaatcgtctgatcctagactgttgtatcctggtggctctgtt 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108549168 tattgagactgctcctcccaatcgtctgatcctagactgttgtatcctggtggctctgtt 108549109
Query: 788 ggatacgtctcgttggtgttccaaaactgatttcgggctattctcatttaagaaaggacc 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108549108 ggatacgtctcgttggtgttccaaaactgatttcgggctattctcatttaagaaaggacc 108549049
Query: 848 ccagaacataactaagcccaggtcctgcgaacactgcgtcacagccctgaagaattgtcc 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108549048 ccagaacataactaagcccaggtcctgcgaacactgcgtcacagccctgaagaattgtcc 108548989
Query: 908 agagaaactggcagctgcttgagtgcccggtcgccagttatgccctgagatgtagcctcc 967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108548988 agagaaactggcagctgcttgagtgcccggtcgccagttatgccctgagatgtagcctcc 108548929
Query: 968 tgtgggtacccgctgctagggtacttcttgcggagcccgcgctgcctggtctcagccttt 1027
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108548928 tgtggatacccgctgctagggtacttcttgcggagcccgcgctgcctggtctcagccttt 108548869
Query: 1028 tcctgattggacgacatgaatattcaaaatctcccgccggcgctcacttgggccctttga 1087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108548868 tcctgattggacgacatgaatattcaaaatctcccgccggcgctcacttgggccctttga 108548809
Query: 1088 aatccctatttctgtttgtggatcatt 1114
|||||||||||||||||||||||||||
Sbjct: 108548808 aatccctatttctgtttgtggatcatt 108548782
Score = 2187 bits (1103), Expect = 0.0
Identities = 1106/1107 (99%)
Strand = Plus / Minus
Query: 8 acttcttttctttgctaaacggtgttgtgttccacaatgcctgagccagcaaaatctgct 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108844690 acttcttttctttgctaaacggtgttgtgttccacaatgcctgagccagcaaaatctgct 108844631
Query: 68 cccgcgcccaagaagggctcgaagaaagccgtcaccaaagcccagaagaaggacggcaag 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108844630 cccgcgcccaagaagggctcgaagaaagccgtcaccaaagcccagaagaaggacggcaag 108844571
Query: 128 aagcggaagcgcagccgcaaggagagctattccatctacgtgtacaaggtgctgaagcag 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108844570 aagcggaagcgcagccgcaaggagagctattccatctacgtgtacaaggtgctgaagcag 108844511
Query: 188 gtgcacccggacacgggcatctcgtccaaggccatgggcatcatgaactccttcgtcaac 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108844510 gtgcacccggacacgggcatctcgtccaaggccatgggcatcatgaactccttcgtcaac 108844451
Query: 248 gacatcttcgagcgcatcgcgggcgaagcgtcccgcctggctcattacaacaagcgctcg 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108844450 gacatcttcgagcgcatcgcgggcgaagcgtcccgcctggctcattacaacaagcgctcg 108844391
Query: 308 accatcacgtcccgggagatccagacggccgtgcgcctgctgctgcccggcgagctggcc 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108844390 accatcacgtcccgggagatccagacggccgtgcgcctgctgctgcccggcgagctggcc 108844331
Query: 368 aagcacgccgtatccgagggcaccaaggcagtcaccaagtacaccagctccaagtgagtc 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108844330 aagcacgccgtatccgagggcaccaaggcagtcaccaagtacaccagctccaagtgagtc 108844271
Query: 428 cctgccgggacgtggcgctcgctcgagtcgccgtgccgcttgactccaaaaggctctttt 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108844270 cctgccgggacgtggcgctcgctcgagtcgccgtgccgcttgactccaaaaggctctttt 108844211
Query: 488 cagagccacccacctagtcaccagaaaagagctttgttcacttgttttccctcttagttc 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108844210 cagagccacccacctagtcaccagaaaagagctttgttcacttgttttccctcttagttc 108844151
Query: 548 cttctcacaaagtaagttctagttggttaaaaaggtcttgtaagaaggcattcgtacctt 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108844150 cttctcacaaagtaagttctagttggttaaaaaggtcttgtaagaaggcattcgtacctt 108844091
Query: 608 tttaagctcttccgacttgaggtttctggtgcgtgattggctttgcttttgaatgtaggg 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108844090 tttaagctcttccgacttgaggtttctggtgcgtgattggctttgcttttgaatgtaggg 108844031
Query: 668 cgcgtcttaactccctttctgggctgcttagctttactatgagtcagttctaaattagga 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108844030 cgcgtcttaactccctttctgggctgcttagctttactatgagtcagttctaaattagga 108843971
Query: 728 tattgagactgctcctcccaatcgtctgatcctagactgttgtatcctggtggctctgtt 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108843970 tattgagactgctcctcccaatcgtctgatcctagactgttgtatcctggtggctctgtt 108843911
Query: 788 ggatacgtctcgttggtgttccaaaactgatttcgggctattctcatttaagaaaggacc 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108843910 ggatacgtctcgttggtgttccaaaactgatttcgggctattctcatttaagaaaggacc 108843851
Query: 848 ccagaacataactaagcccaggtcctgcgaacactgcgtcacagccctgaagaattgtcc 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108843850 ccagaacataactaagcccaggtcctgcgaacactgcgtcacagccctgaagaattgtcc 108843791
Query: 908 agagaaactggcagctgcttgagtgcccggtcgccagttatgccctgagatgtagcctcc 967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108843790 agagaaactggcagctgcttgagtgcccggtcgccagttatgccctgagatgtagcctcc 108843731
Query: 968 tgtgggtacccgctgctagggtacttcttgcggagcccgcgctgcctggtctcagccttt 1027
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108843730 tgtggatacccgctgctagggtacttcttgcggagcccgcgctgcctggtctcagccttt 108843671
Query: 1028 tcctgattggacgacatgaatattcaaaatctcccgccggcgctcacttgggccctttga 1087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108843670 tcctgattggacgacatgaatattcaaaatctcccgccggcgctcacttgggccctttga 108843611
Query: 1088 aatccctatttctgtttgtggatcatt 1114
|||||||||||||||||||||||||||
Sbjct: 108843610 aatccctatttctgtttgtggatcatt 108843584
Score = 1473 bits (743), Expect = 0.0
Identities = 788/810 (97%)
Strand = Plus / Minus
Query: 1227 actcaggaatttgcgtctcttgttcctgcctgtactggtccctcactgttttatcttcct 1286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108548669 actcaggaatttgcgtctcttgttcctgcctgtactggtccctcactgttttatcttcct 108548610
Query: 1287 cctagcagctgtcagaaattgtannnnnnnatttacggtctgtcttctcaagcccttaac 1346
||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 108548609 cctagcagctgtcagaaattgtatttttttatttacggtctgtcttctcaagcccttaac 108548550
Query: 1347 agaaactttgctggtctggttttcctctatatggtcaatgccaaccagtgcttggtgaac 1406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108548549 agaaactttgctggtctggttttcctctatatggtcaatgccaaccagtgcttggtgaac 108548490
Query: 1407 acttaaaaccttaatattgtatcactttttctgtctcacctctgtaattgcttccatagg 1466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108548489 acttaaaaccttaatattgtatcactttttctgtctcacctctgtaattgcttccatagg 108548430
Query: 1467 tggatgagtatggttagatgtctgtgaagacatgatgaagatgggaatgtttttggagct 1526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108548429 tggatgagtatggttagatgtctgtgaagacatgatgaagatgggaatgtttttggagct 108548370
Query: 1527 ccttcccaaagtctgtctggtcacctcagagcaacagctgggaggaagcctgtgttaaaa 1586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108548369 ccttcccaaagtctgtctggtcacctcagagcaacagctgggaggaagcctgtgttaaaa 108548310
Query: 1587 ttnnnnnnnnnnnnnncgcaacggggagtggcaattttaaatcaattttgcttctcagtt 1646
|| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108548309 tttgtgtgtgtgtgtgcgcaacggggagtggcaattttaaatcaattttgcttctcagtt 108548250
Query: 1647 tggcctaattgcttgaattttcattaaattcagagcattggccactggaaagatcctttt 1706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108548249 tggcctaattgcttgaattttcattaaattcagagcattggccactggaaagatcctttt 108548190
Query: 1707 cctttttctttatggcacttttccttccatcctgaccctttgttccccactgagatggct 1766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108548189 cctttttctttatggcacttttccttccatcctgaccctttgttccccactgagatggct 108548130
Query: 1767 tttaatttacactcaccgtctcatttgctttttaggagaccccataaaatagacaaggtt 1826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108548129 tttaatttacactcaccgtctcatttgctttttaggagaccccataaaatagacaaggtt 108548070
Query: 1827 aatatccctttaaaaatggggttgagaggagcaaagtggaccactggtcatgcagctaac 1886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108548069 aatatccctttaaaaatggggttgagaggagcaaagtggaccactggtcatgcagctaac 108548010
Query: 1887 attttcctcttttgtatcctcagattcgaggacaattgcattttagttttatttcctgta 1946
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 108548009 attttcctcttttgtatcctcagatttgaggacaattgcattttagttttatttcctgta 108547950
Query: 1947 attacagaatgctcagtctctcagtccacgcattgattttgttgatacagacactgatga 2006
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108547949 attacagaatgctcagtctctcagtccacgcattgattttgttgatacagacactgatga 108547890
Query: 2007 tctgatcggttattcagctctgcttttgaa 2036
||||||||||||||||||||||||||||||
Sbjct: 108547889 tctgatcggttattcagctctgcttttgaa 108547860
Score = 1473 bits (743), Expect = 0.0
Identities = 788/810 (97%)
Strand = Plus / Minus
Query: 1227 actcaggaatttgcgtctcttgttcctgcctgtactggtccctcactgttttatcttcct 1286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108843471 actcaggaatttgcgtctcttgttcctgcctgtactggtccctcactgttttatcttcct 108843412
Query: 1287 cctagcagctgtcagaaattgtannnnnnnatttacggtctgtcttctcaagcccttaac 1346
||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 108843411 cctagcagctgtcagaaattgtatttttttatttacggtctgtcttctcaagcccttaac 108843352
Query: 1347 agaaactttgctggtctggttttcctctatatggtcaatgccaaccagtgcttggtgaac 1406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108843351 agaaactttgctggtctggttttcctctatatggtcaatgccaaccagtgcttggtgaac 108843292
Query: 1407 acttaaaaccttaatattgtatcactttttctgtctcacctctgtaattgcttccatagg 1466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108843291 acttaaaaccttaatattgtatcactttttctgtctcacctctgtaattgcttccatagg 108843232
Query: 1467 tggatgagtatggttagatgtctgtgaagacatgatgaagatgggaatgtttttggagct 1526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108843231 tggatgagtatggttagatgtctgtgaagacatgatgaagatgggaatgtttttggagct 108843172
Query: 1527 ccttcccaaagtctgtctggtcacctcagagcaacagctgggaggaagcctgtgttaaaa 1586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108843171 ccttcccaaagtctgtctggtcacctcagagcaacagctgggaggaagcctgtgttaaaa 108843112
Query: 1587 ttnnnnnnnnnnnnnncgcaacggggagtggcaattttaaatcaattttgcttctcagtt 1646
|| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108843111 tttgtgtgtgtgtgtgcgcaacggggagtggcaattttaaatcaattttgcttctcagtt 108843052
Query: 1647 tggcctaattgcttgaattttcattaaattcagagcattggccactggaaagatcctttt 1706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108843051 tggcctaattgcttgaattttcattaaattcagagcattggccactggaaagatcctttt 108842992
Query: 1707 cctttttctttatggcacttttccttccatcctgaccctttgttccccactgagatggct 1766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108842991 cctttttctttatggcacttttccttccatcctgaccctttgttccccactgagatggct 108842932
Query: 1767 tttaatttacactcaccgtctcatttgctttttaggagaccccataaaatagacaaggtt 1826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108842931 tttaatttacactcaccgtctcatttgctttttaggagaccccataaaatagacaaggtt 108842872
Query: 1827 aatatccctttaaaaatggggttgagaggagcaaagtggaccactggtcatgcagctaac 1886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108842871 aatatccctttaaaaatggggttgagaggagcaaagtggaccactggtcatgcagctaac 108842812
Query: 1887 attttcctcttttgtatcctcagattcgaggacaattgcattttagttttatttcctgta 1946
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 108842811 attttcctcttttgtatcctcagatttgaggacaattgcattttagttttatttcctgta 108842752
Query: 1947 attacagaatgctcagtctctcagtccacgcattgattttgttgatacagacactgatga 2006
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108842751 attacagaatgctcagtctctcagtccacgcattgattttgttgatacagacactgatga 108842692
Query: 2007 tctgatcggttattcagctctgcttttgaa 2036
||||||||||||||||||||||||||||||
Sbjct: 108842691 tctgatcggttattcagctctgcttttgaa 108842662
Score = 779 bits (393), Expect = 0.0
Identities = 443/457 (96%), Gaps = 2/457 (0%)
Strand = Plus / Plus
Query: 44 atgcctgagccagcaaaatctgctcccgcgcccaagaagggctcgaagaaagccgtcacc 103
||||||||||| || || || || || |||||||||||||||||||||||||||||||||
Sbjct: 108524414 atgcctgagcccgccaagtccgccccggcgcccaagaagggctcgaagaaagccgtcacc 108524473
Query: 104 aaagcccagaagaaggacggcaagaagcggaagcgcagccgcaaggagagctattccatc 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108524474 aaagcccagaagaaggacggcaagaagcggaagcgcagccgcaaggagagctattccatc 108524533
Query: 164 tacgtgtacaaggtgctgaagcaggtgcacccggacacgggcatctcgtccaaggccatg 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108524534 tacgtgtacaaggtgctgaagcaggtgcacccggacacgggcatctcgtccaaggccatg 108524593
Query: 224 ggcatcatgaactccttcgtcaacgacatcttcgagcgcatcgcgggcgaagcgtcccgc 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108524594 ggcatcatgaactccttcgtcaacgacatcttcgagcgcatcgcgggcgaagcgtcccgc 108524653
Query: 284 ctggctcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcgc 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108524654 ctggctcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcgc 108524713
Query: 344 ctgctgctgcccggcgagctggccaagcacgccgtatccgagggcaccaaggcagtcacc 403
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 108524714 ctgctgctgcccggcgagctggccaagcacgccgtgtccgagggcaccaaggcggtcacc 108524773
Query: 404 aagtacaccagctccaagtgagtccctgccggga-cgtggcgctcgctcgagtcgccgtg 462
|||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||| |
Sbjct: 108524774 aagtacaccagctccaagtgagtccctgccgggatagtggcgctcgcccga-tcgccggg 108524832
Query: 463 ccgcttgactccaaaaggctcttttcagagccaccca 499
||||||||||||||||||||||||||||||||||||
Sbjct: 108524833 tcgcttgactccaaaaggctcttttcagagccaccca 108524869
Score = 779 bits (393), Expect = 0.0
Identities = 443/457 (96%), Gaps = 2/457 (0%)
Strand = Plus / Plus
Query: 44 atgcctgagccagcaaaatctgctcccgcgcccaagaagggctcgaagaaagccgtcacc 103
||||||||||| || || || || || |||||||||||||||||||||||||||||||||
Sbjct: 108816869 atgcctgagcccgccaagtccgccccggcgcccaagaagggctcgaagaaagccgtcacc 108816928
Query: 104 aaagcccagaagaaggacggcaagaagcggaagcgcagccgcaaggagagctattccatc 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108816929 aaagcccagaagaaggacggcaagaagcggaagcgcagccgcaaggagagctattccatc 108816988
Query: 164 tacgtgtacaaggtgctgaagcaggtgcacccggacacgggcatctcgtccaaggccatg 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108816989 tacgtgtacaaggtgctgaagcaggtgcacccggacacgggcatctcgtccaaggccatg 108817048
Query: 224 ggcatcatgaactccttcgtcaacgacatcttcgagcgcatcgcgggcgaagcgtcccgc 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108817049 ggcatcatgaactccttcgtcaacgacatcttcgagcgcatcgcgggcgaagcgtcccgc 108817108
Query: 284 ctggctcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcgc 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108817109 ctggctcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcgc 108817168
Query: 344 ctgctgctgcccggcgagctggccaagcacgccgtatccgagggcaccaaggcagtcacc 403
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 108817169 ctgctgctgcccggcgagctggccaagcacgccgtgtccgagggcaccaaggcggtcacc 108817228
Query: 404 aagtacaccagctccaagtgagtccctgccggga-cgtggcgctcgctcgagtcgccgtg 462
|||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||| |
Sbjct: 108817229 aagtacaccagctccaagtgagtccctgccgggatagtggcgctcgcccga-tcgccggg 108817287
Query: 463 ccgcttgactccaaaaggctcttttcagagccaccca 499
||||||||||||||||||||||||||||||||||||
Sbjct: 108817288 tcgcttgactccaaaaggctcttttcagagccaccca 108817324
Score = 779 bits (393), Expect = 0.0
Identities = 443/457 (96%), Gaps = 2/457 (0%)
Strand = Plus / Minus
Query: 44 atgcctgagccagcaaaatctgctcccgcgcccaagaagggctcgaagaaagccgtcacc 103
||||||||||| || || || || || |||||||||||||||||||||||||||||||||
Sbjct: 108824575 atgcctgagcccgccaagtccgccccggcgcccaagaagggctcgaagaaagccgtcacc 108824516
Query: 104 aaagcccagaagaaggacggcaagaagcggaagcgcagccgcaaggagagctattccatc 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108824515 aaagcccagaagaaggacggcaagaagcggaagcgcagccgcaaggagagctattccatc 108824456
Query: 164 tacgtgtacaaggtgctgaagcaggtgcacccggacacgggcatctcgtccaaggccatg 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108824455 tacgtgtacaaggtgctgaagcaggtgcacccggacacgggcatctcgtccaaggccatg 108824396
Query: 224 ggcatcatgaactccttcgtcaacgacatcttcgagcgcatcgcgggcgaagcgtcccgc 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108824395 ggcatcatgaactccttcgtcaacgacatcttcgagcgcatcgcgggcgaagcgtcccgc 108824336
Query: 284 ctggctcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcgc 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108824335 ctggctcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcgc 108824276
Query: 344 ctgctgctgcccggcgagctggccaagcacgccgtatccgagggcaccaaggcagtcacc 403
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 108824275 ctgctgctgcccggcgagctggccaagcacgccgtgtccgagggcaccaaggcggtcacc 108824216
Query: 404 aagtacaccagctccaagtgagtccctgccggga-cgtggcgctcgctcgagtcgccgtg 462
|||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||| |
Sbjct: 108824215 aagtacaccagctccaagtgagtccctgccgggatagtggcgctcgcccga-tcgccggg 108824157
Query: 463 ccgcttgactccaaaaggctcttttcagagccaccca 499
||||||||||||||||||||||||||||||||||||
Sbjct: 108824156 tcgcttgactccaaaaggctcttttcagagccaccca 108824120
Score = 749 bits (378), Expect = 0.0
Identities = 419/430 (97%), Gaps = 2/430 (0%)
Strand = Plus / Minus
Query: 71 gcgcccaagaagggctcgaagaaagccgtcaccaaagcccagaagaaggacggcaagaag 130
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 108532093 gcgccaaagaagggctcgaagaaagccgtcaccaaagcccagaagaaggacggcagaaag 108532034
Query: 131 cggaagcgcagccgcaaggagagctattccatctacgtgtacaaggtgctgaagcaggtg 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108532033 cggaagcgcagccgcaaggagagctattccatctacgtgtacaaggtgctgaagcaggtg 108531974
Query: 191 cacccggacacgggcatctcgtccaaggccatgggcatcatgaactccttcgtcaacgac 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108531973 cacccggacacgggcatctcgtccaaggccatgggcatcatgaactccttcgtcaacgac 108531914
Query: 251 atcttcgagcgcatcgcgggcgaagcgtcccgcctggctcattacaacaagcgctcgacc 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108531913 atcttcgagcgcatcgcgggcgaagcgtcccgcctggctcattacaacaagcgctcgacc 108531854
Query: 311 atcacgtcccgggagatccagacggccgtgcgcctgctgctgcccggcgagctggccaag 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108531853 atcacgtcccgggagatccagacggccgtgcgcctgctgctgcccggcgagctggccaag 108531794
Query: 371 cacgccgtatccgagggcaccaaggcagtcaccaagtacaccagctccaagtgagtccct 430
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 108531793 cacgccgtgtccgagggcaccaaggcggtcaccaagtacaccagctccaagtgagtccct 108531734
Query: 431 gccggga-cgtggcgctcgctcgagtcgccgtgccgcttgactccaaaaggctcttttca 489
||||||| ||||||||||| ||| |||||| | ||||||||||||||||||||||||||
Sbjct: 108531733 gccgggatagtggcgctcgcccga-tcgccgggtcgcttgactccaaaaggctcttttca 108531675
Query: 490 gagccaccca 499
||||||||||
Sbjct: 108531674 gagccaccca 108531665
Score = 486 bits (245), Expect = e-134
Identities = 248/249 (99%)
Strand = Plus / Minus
Query: 2244 aatgactactgggtctgtggagaagctgcgtgcctctgacttggaagatgaatatttata 2303
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 108547652 aatgactactgggtctgtggagaagctgcgtgcctctgacttggaagatgaaaatttata 108547593
Query: 2304 aaccataaaccaaacttctacttcagaggtaacgctggagctgaaagagcctgttctgag 2363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108547592 aaccataaaccaaacttctacttcagaggtaacgctggagctgaaagagcctgttctgag 108547533
Query: 2364 gatactgtcaacgcttagtaattgaaaaatgcatgaccacaaaaacaaacaaatggcagc 2423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108547532 gatactgtcaacgcttagtaattgaaaaatgcatgaccacaaaaacaaacaaatggcagc 108547473
Query: 2424 aaataaacatgaccgcaaacaagaagcattatgaacaagacagaaaaaacaaagtcctta 2483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108547472 aaataaacatgaccgcaaacaagaagcattatgaacaagacagaaaaaacaaagtcctta 108547413
Query: 2484 ataaagtta 2492
|||||||||
Sbjct: 108547412 ataaagtta 108547404
Score = 486 bits (245), Expect = e-134
Identities = 248/249 (99%)
Strand = Plus / Minus
Query: 2244 aatgactactgggtctgtggagaagctgcgtgcctctgacttggaagatgaatatttata 2303
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 108842454 aatgactactgggtctgtggagaagctgcgtgcctctgacttggaagatgaaaatttata 108842395
Query: 2304 aaccataaaccaaacttctacttcagaggtaacgctggagctgaaagagcctgttctgag 2363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108842394 aaccataaaccaaacttctacttcagaggtaacgctggagctgaaagagcctgttctgag 108842335
Query: 2364 gatactgtcaacgcttagtaattgaaaaatgcatgaccacaaaaacaaacaaatggcagc 2423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108842334 gatactgtcaacgcttagtaattgaaaaatgcatgaccacaaaaacaaacaaatggcagc 108842275
Query: 2424 aaataaacatgaccgcaaacaagaagcattatgaacaagacagaaaaaacaaagtcctta 2483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108842274 aaataaacatgaccgcaaacaagaagcattatgaacaagacagaaaaaacaaagtcctta 108842215
Query: 2484 ataaagtta 2492
|||||||||
Sbjct: 108842214 ataaagtta 108842206
Score = 452 bits (228), Expect = e-124
Identities = 342/380 (90%)
Strand = Plus / Minus
Query: 43 aatgcctgagccagcaaaatctgctcccgcgcccaagaagggctcgaagaaagccgtcac 102
|||||| || ||||||||||||||||| || || || || || || || || || || ||
Sbjct: 108798286 aatgccggatccagcaaaatctgctcctgctcctaaaaaagggtctaaaaaggctgtaac 108798227
Query: 103 caaagcccagaagaaggacggcaagaagcggaagcgcagccgcaaggagagctattccat 162
|||| ||||||||||| ||||| ||||| ||||| ||||||||||| || || || |
Sbjct: 108798226 aaaagtgcagaagaaggatggcaaaaagcgcaagcgaagccgcaaggaaagttactctgt 108798167
Query: 163 ctacgtgtacaaggtgctgaagcaggtgcacccggacacgggcatctcgtccaaggccat 222
|| || ||||| |||||||| ||||| || || ||||| ||||||||||||||||||||
Sbjct: 108798166 gtatgtatacaaagtgctgaaacaggttcatccagacaccggcatctcgtccaaggccat 108798107
Query: 223 gggcatcatgaactccttcgtcaacgacatcttcgagcgcatcgcgggcgaagcgtcccg 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108798106 gggcatcatgaactccttcgtcaacgacatcttcgagcgcatcgcgggcgaagcgtcccg 108798047
Query: 283 cctggctcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcg 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108798046 cctggctcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcg 108797987
Query: 343 cctgctgctgcccggcgagctggccaagcacgccgtatccgagggcaccaaggcagtcac 402
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 108797986 cctgctgctgcccggcgagctggccaagcacgccgtgtccgagggcaccaaggcggtcac 108797927
Query: 403 caagtacaccagctccaagt 422
||||||||||| |||||||
Sbjct: 108797926 taagtacaccagttccaagt 108797907
Score = 202 bits (102), Expect = 8e-49
Identities = 136/142 (95%), Gaps = 4/142 (2%)
Strand = Plus / Minus
Query: 2645 tctcctcagaaactctacagagaataaactcttagttcggtgataaagggacttgagaaa 2704
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 108547251 tctcctcagaaactctacagagaataaactcttagttcggtgattaagggacttgagaaa 108547192
Query: 2705 ataagttccttctttaaaaagcttggatttgggggttgtggaggaatattctgtgcttta 2764
||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||
Sbjct: 108547191 gtaagttccttctttaaaaagc-tggattt-ggggttgtggaggaata-tctgtgcttta 108547135
Query: 2765 aaattaaaattaaagggagttt 2786
||||||||||| ||||||||||
Sbjct: 108547134 aaattaaaatt-aagggagttt 108547114
Score = 202 bits (102), Expect = 8e-49
Identities = 136/142 (95%), Gaps = 4/142 (2%)
Strand = Plus / Minus
Query: 2645 tctcctcagaaactctacagagaataaactcttagttcggtgataaagggacttgagaaa 2704
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 108842053 tctcctcagaaactctacagagaataaactcttagttcggtgattaagggacttgagaaa 108841994
Query: 2705 ataagttccttctttaaaaagcttggatttgggggttgtggaggaatattctgtgcttta 2764
||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||
Sbjct: 108841993 gtaagttccttctttaaaaagc-tggattt-ggggttgtggaggaata-tctgtgcttta 108841937
Query: 2765 aaattaaaattaaagggagttt 2786
||||||||||| ||||||||||
Sbjct: 108841936 aaattaaaatt-aagggagttt 108841916
>Sscrofa_Chr07
|| Length = 134764511
Score = 507 bits (256), Expect = e-140
Identities = 349/380 (91%)
Strand = Plus / Plus
Query: 43 aatgcctgagccagcaaaatctgctcccgcgcccaagaagggctcgaagaaagccgtcac 102
||||||||| ||||| ||||||||||| || ||||| |||||||| ||||||||||| ||
Sbjct: 22089318 aatgcctgaaccagcgaaatctgctccagcccccaaaaagggctccaagaaagccgtgac 22089377
Query: 103 caaagcccagaagaaggacggcaagaagcggaagcgcagccgcaaggagagctattccat 162
||| || |||||||| || ||||||||||| ||||||||||||||||||||||| ||| |
Sbjct: 22089378 caaggcgcagaagaaagatggcaagaagcgcaagcgcagccgcaaggagagctactccgt 22089437
Query: 163 ctacgtgtacaaggtgctgaagcaggtgcacccggacacgggcatctcgtccaaggccat 222
|||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||
Sbjct: 22089438 gtacgtgtacaaggtgctgaagcaggtccacccggacactggcatctcgtccaaagccat 22089497
Query: 223 gggcatcatgaactccttcgtcaacgacatcttcgagcgcatcgcgggcgaagcgtcccg 282
|||||||||||||||||| ||||||||||||||||||||||||||||| || || || ||
Sbjct: 22089498 gggcatcatgaactcctttgtcaacgacatcttcgagcgcatcgcgggtgaggcctcgcg 22089557
Query: 283 cctggctcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcg 342
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22089558 gctggcgcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcg 22089617
Query: 343 cctgctgctgcccggcgagctggccaagcacgccgtatccgagggcaccaaggcagtcac 402
|||||||||||||| ||| |||||||||||||||| ||||||||||||||||| |||||
Sbjct: 22089618 gctgctgctgcccggggagttggccaagcacgccgtgtccgagggcaccaaggctgtcac 22089677
Query: 403 caagtacaccagctccaagt 422
||||||||||||||| ||||
Sbjct: 22089678 caagtacaccagctctaagt 22089697
Score = 500 bits (252), Expect = e-138
Identities = 354/388 (91%)
Strand = Plus / Plus
Query: 44 atgcctgagccagcaaaatctgctcccgcgcccaagaagggctcgaagaaagccgtcacc 103
|||||||||||||| || || ||||| || ||||| |||||||| |||||||| || |||
Sbjct: 23097502 atgcctgagccagctaagtccgctcctgcccccaaaaagggctccaagaaagcagtgacc 23097561
Query: 104 aaagcccagaagaaggacggcaagaagcggaagcgcagccgcaaggagagctattccatc 163
|| || ||||||||||||||||||||||| ||||||||||||||||||||||| || |
Sbjct: 23097562 aaggcgcagaagaaggacggcaagaagcgcaagcgcagccgcaaggagagctactcggtg 23097621
Query: 164 tacgtgtacaaggtgctgaagcaggtgcacccggacacgggcatctcgtccaaggccatg 223
|||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct: 23097622 tacgtgtacaaggtgctgaagcaggtccaccccgacaccggcatctcgtccaaggccatg 23097681
Query: 224 ggcatcatgaactccttcgtcaacgacatcttcgagcgcatcgcgggcgaagcgtcccgc 283
|||||||||||||| || |||||||||||||| ||||||||||| ||||| || || ||
Sbjct: 23097682 ggcatcatgaactcatttgtcaacgacatctttgagcgcatcgccggcgaggcctcgcgg 23097741
Query: 284 ctggctcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcgc 343
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23097742 ctggcgcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcgc 23097801
Query: 344 ctgctgctgcccggcgagctggccaagcacgccgtatccgagggcaccaaggcagtcacc 403
|||||||||||||| |||||||||||||| ||||| || |||||||||||||| ||||||
Sbjct: 23097802 ctgctgctgcccggggagctggccaagcatgccgtgtctgagggcaccaaggctgtcacc 23097861
Query: 404 aagtacaccagctccaagtgagtccctg 431
||||||||||||||||||||||| ||||
Sbjct: 23097862 aagtacaccagctccaagtgagttcctg 23097889
Score = 496 bits (250), Expect = e-137
Identities = 334/362 (92%)
Strand = Plus / Minus
Query: 59 aaatctgctcccgcgcccaagaagggctcgaagaaagccgtcaccaaagcccagaagaag 118
|||||||||||||| || |||||||| || |||||||| || || || || |||||||||
Sbjct: 22052921 aaatctgctcccgccccgaagaaggggtccaagaaagcggtgactaaggcgcagaagaag 22052862
Query: 119 gacggcaagaagcggaagcgcagccgcaaggagagctattccatctacgtgtacaaggtg 178
|| ||||||||||| ||||||||||||||||||||||| ||| | |||||||||||||||
Sbjct: 22052861 gatggcaagaagcgaaagcgcagccgcaaggagagctactccgtgtacgtgtacaaggtg 22052802
Query: 179 ctgaagcaggtgcacccggacacgggcatctcgtccaaggccatgggcatcatgaactcc 238
||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 22052801 ctgaagcaggtccacccggacaccggcatctcgtccaaagccatgggcatcatgaactcc 22052742
Query: 239 ttcgtcaacgacatcttcgagcgcatcgcgggcgaagcgtcccgcctggctcattacaac 298
|| ||||||||||||||||||||||||||||| || || || || ||||| |||||||||
Sbjct: 22052741 tttgtcaacgacatcttcgagcgcatcgcgggtgaggcctcgcggctggcgcattacaac 22052682
Query: 299 aagcgctcgaccatcacgtcccgggagatccagacggccgtgcgcctgctgctgcccggc 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22052681 aagcgctcgaccatcacgtcccgggagatccagacggccgtgcgcctgctgctgcccggg 22052622
Query: 359 gagctggccaagcacgccgtatccgagggcaccaaggcagtcaccaagtacaccagctcc 418
|||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||
Sbjct: 22052621 gagctggccaagcacgccgtgtccgagggcactaaggccgtcaccaagtacaccagctcc 22052562
Query: 419 aa 420
||
Sbjct: 22052561 aa 22052560
Score = 490 bits (247), Expect = e-135
Identities = 346/379 (91%)
Strand = Plus / Minus
Query: 44 atgcctgagccagcaaaatctgctcccgcgcccaagaagggctcgaagaaagccgtcacc 103
|||||||| ||||| || || ||||| || ||||| || ||||| ||||||||||| ||
Sbjct: 23086255 atgcctgatccagctaagtccgctcctgcccccaaaaaaggctccaagaaagccgtgact 23086196
Query: 104 aaagcccagaagaaggacggcaagaagcggaagcgcagccgcaaggagagctattccatc 163
|| || ||||| ||||||||||||||||| ||||||||||||||||||||||| || |
Sbjct: 23086195 aaggcgcagaaaaaggacggcaagaagcgcaagcgcagccgcaaggagagctactcggtg 23086136
Query: 164 tacgtgtacaaggtgctgaagcaggtgcacccggacacgggcatctcgtccaaggccatg 223
|||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct: 23086135 tacgtgtacaaggtgctgaagcaggtccaccccgacaccggcatctcgtccaaggccatg 23086076
Query: 224 ggcatcatgaactccttcgtcaacgacatcttcgagcgcatcgcgggcgaagcgtcccgc 283
|||||||||||||||||||||||||||||||| ||||| ||||||||||| || || ||
Sbjct: 23086075 ggcatcatgaactccttcgtcaacgacatctttgagcgtatcgcgggcgaggcctcgcgg 23086016
Query: 284 ctggctcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcgc 343
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23086015 ctggcgcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcgc 23085956
Query: 344 ctgctgctgcccggcgagctggccaagcacgccgtatccgagggcaccaaggcagtcacc 403
|||||||||||||| ||| |||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 23085955 ctgctgctgcccggggagttggccaagcacgccgtgtccgagggcaccaaggctgtcacc 23085896
Query: 404 aagtacaccagctccaagt 422
|||||||||||||||||||
Sbjct: 23085895 aagtacaccagctccaagt 23085877
Score = 486 bits (245), Expect = e-134
Identities = 346/380 (91%)
Strand = Plus / Minus
Query: 43 aatgcctgagccagcaaaatctgctcccgcgcccaagaagggctcgaagaaagccgtcac 102
||||||||| ||| | ||||||||||| || || ||||||||||| ||||||||||| ||
Sbjct: 22032351 aatgcctgaaccaacgaaatctgctccagccccgaagaagggctccaagaaagccgtgac 22032292
Query: 103 caaagcccagaagaaggacggcaagaagcggaagcgcagccgcaaggagagctattccat 162
||| || ||||| || || ||||||||||| ||||||||||||||||||||||| ||| |
Sbjct: 22032291 caaggcgcagaaaaaagatggcaagaagcgcaagcgcagccgcaaggagagctactccgt 22032232
Query: 163 ctacgtgtacaaggtgctgaagcaggtgcacccggacacgggcatctcgtccaaggccat 222
|||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct: 22032231 gtacgtgtacaaggtgctgaagcaggtccaccccgacaccggcatctcgtccaaggccat 22032172
Query: 223 gggcatcatgaactccttcgtcaacgacatcttcgagcgcatcgcgggcgaagcgtcccg 282
|||||||||||||||||||||||||||||||||||||||||||||||| || || || ||
Sbjct: 22032171 gggcatcatgaactccttcgtcaacgacatcttcgagcgcatcgcgggtgaggcctcgcg 22032112
Query: 283 cctggctcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcg 342
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 22032111 gctggcgcattacaacaagcggtcgaccatcacgtcccgggagatccagacggccgtgcg 22032052
Query: 343 cctgctgctgcccggcgagctggccaagcacgccgtatccgagggcaccaaggcagtcac 402
|||||||||||||| ||| |||||||||||||||| || |||||||||||||| || ||
Sbjct: 22032051 gctgctgctgcccggngagttggccaagcacgccgtgtctgagggcaccaaggccgttac 22031992
Query: 403 caagtacaccagctccaagt 422
||||||||||||||||||||
Sbjct: 22031991 caagtacaccagctccaagt 22031972
Score = 480 bits (242), Expect = e-132
Identities = 347/382 (90%)
Strand = Plus / Plus
Query: 44 atgcctgagccagcaaaatctgctcccgcgcccaagaagggctcgaagaaagccgtcacc 103
||||||||||| | || || ||||| || || ||||||||||| ||||| || || |||
Sbjct: 23110662 atgcctgagccctccaagtccgctccggccccaaagaagggctccaagaaggcggtgacc 23110721
Query: 104 aaagcccagaagaaggacggcaagaagcggaagcgcagccgcaaggagagctattccatc 163
|| || ||||||||||| ||||||||||| || |||||||||||||||||||| || |
Sbjct: 23110722 aaggcgcagaagaaggatggcaagaagcgtaaacgcagccgcaaggagagctactcggtg 23110781
Query: 164 tacgtgtacaaggtgctgaagcaggtgcacccggacacgggcatctcgtccaaggccatg 223
|||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct: 23110782 tacgtgtacaaggtgctgaagcaggtccaccccgacaccggcatctcgtccaaggccatg 23110841
Query: 224 ggcatcatgaactccttcgtcaacgacatcttcgagcgcatcgcgggcgaagcgtcccgc 283
|||||||||||||||||||||||||||||||| |||||||| || ||||| || || ||
Sbjct: 23110842 ggcatcatgaactccttcgtcaacgacatctttgagcgcattgccggcgaggcctcgcgg 23110901
Query: 284 ctggctcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcgc 343
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23110902 ctggcgcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcgc 23110961
Query: 344 ctgctgctgcccggcgagctggccaagcacgccgtatccgagggcaccaaggcagtcacc 403
|||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 23110962 ctgctgctgcccggggagctggccaagcacgccgtgtccgagggcaccaaggctgtcacc 23111021
Query: 404 aagtacaccagctccaagtgag 425
||||||||||||||||||||||
Sbjct: 23111022 aagtacaccagctccaagtgag 23111043
Score = 474 bits (239), Expect = e-130
Identities = 347/383 (90%)
Strand = Plus / Minus
Query: 44 atgcctgagccagcaaaatctgctcccgcgcccaagaagggctcgaagaaagccgtcacc 103
|||||||||||||| |||||||| || || || ||||||||||| ||||| || || |||
Sbjct: 23174494 atgcctgagccagctaaatctgccccagccccaaagaagggctccaagaaggcggtgacc 23174435
Query: 104 aaagcccagaagaaggacggcaagaagcggaagcgcagccgcaaggagagctattccatc 163
|| || ||||||||||||||||||||||| || |||||||||||||||||||| || |
Sbjct: 23174434 aaggcgcagaagaaggacggcaagaagcgcaaacgcagccgcaaggagagctactcggtg 23174375
Query: 164 tacgtgtacaaggtgctgaagcaggtgcacccggacacgggcatctcgtccaaggccatg 223
|||||||||||||||||||||||||| ||||| ||||| |||||||||||||| ||||||
Sbjct: 23174374 tacgtgtacaaggtgctgaagcaggtccaccccgacaccggcatctcgtccaaagccatg 23174315
Query: 224 ggcatcatgaactccttcgtcaacgacatcttcgagcgcatcgcgggcgaagcgtcccgc 283
||||||||||| ||||| ||||||||||||||||||||||||||||| || || || ||
Sbjct: 23174314 ggcatcatgaattcctttgtcaacgacatcttcgagcgcatcgcgggtgaggcctcgcgg 23174255
Query: 284 ctggctcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcgc 343
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23174254 ctggcgcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcgg 23174195
Query: 344 ctgctgctgcccggcgagctggccaagcacgccgtatccgagggcaccaaggcagtcacc 403
|||||||||||||| |||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct: 23174194 ctgctgctgcccggggagctggccaagcatgccgtgtccgagggcaccaaggctgtcacc 23174135
Query: 404 aagtacaccagctccaagtgagt 426
|||||||| ||| ||||||||||
Sbjct: 23174134 aagtacacaagcgccaagtgagt 23174112
Score = 258 bits (130), Expect = 1e-65
Identities = 238/274 (86%)
Strand = Plus / Minus
Query: 149 gagagctattccatctacgtgtacaaggtgctgaagcaggtgcacccggacacgggcatc 208
|||||||| || |||||| | ||||||||||||||||| || || || || || || |||
Sbjct: 21770604 gagagctactcaatctacatctacaaggtgctgaagcaagttcatcccgatacaggtatc 21770545
Query: 209 tcgtccaaggccatgggcatcatgaactccttcgtcaacgacatcttcgagcgcatcgcg 268
|| || ||||||||| |||||||||| || ||||||| ||||||||||||||||||||
Sbjct: 21770544 tcttcgaaggccatgagcatcatgaattctttcgtcactgacatcttcgagcgcatcgca 21770485
Query: 269 ggcgaagcgtcccgcctggctcattacaacaagcgctcgaccatcacgtcccgggagatc 328
| || ||||| |||||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct: 21770484 agtgaggcgtcgcgcctggcacattacaacaagcgctccacgatcacgtcccgggagatc 21770425
Query: 329 cagacggccgtgcgcctgctgctgcccggcgagctggccaagcacgccgtatccgagggc 388
||||||||||||||| ||||| | || || ||| ||||||||||||| || |||||||||
Sbjct: 21770424 cagacggccgtgcgcttgctgttaccaggggagttggccaagcacgcggtgtccgagggc 21770365
Query: 389 accaaggcagtcaccaagtacaccagctccaagt 422
|| ||||| |||||||||||||||||||||||||
Sbjct: 21770364 actaaggctgtcaccaagtacaccagctccaagt 21770331
Score = 220 bits (111), Expect = 3e-54
Identities = 313/382 (81%), Gaps = 15/382 (3%)
Strand = Plus / Plus
Query: 44 atgcctgagccagcaaaatctgctcccgcgcccaagaagggctcgaagaaagccgtcacc 103
|||||||||||||| |||||||| || || || ||||||||||| ||||| || || |||
Sbjct: 23188870 atgcctgagccagctaaatctgccccagctcc-aagaagggctccaagaaggcggtgacc 23188928
Query: 104 aaagcccagaagaaggacggcaagaagcggaagcgcagccgcaaggagagctattccatc 163
| || ||||||||||||||||||||||| | ||||||||||||||||||||| || |
Sbjct: 23188929 agggcgcagaagaaggacggcaagaagcgcaggcgcagccgcaaggagagctactcagtg 23188988
Query: 164 tacgtgtacaaggtgctgaagcaggtgcacccggacacgggcatctcgtccaaggccatg 223
|||||||||||||||||||||||||| |||||||||| ||||| ||
Sbjct: 23188989 tacgtgtacaaggtgctgaagcaggtctacccggacac--------------aggccgtg 23189034
Query: 224 ggcatcatgaactccttcgtcaacgacatcttcgagcgcatcgcgggcgaagcgtcccgc 283
|||||||||||||| ||||| ||||||||| ||||||||||| ||||||| || || |||
Sbjct: 23189035 ggcatcatgaactctttcgttaacgacatcgtcgagcgcatcacgggcgaggcatcgcgc 23189094
Query: 284 ctggctcattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcgc 343
||||| |||||||| || ||||||||||| |||| | || ||| ||| || |||||||
Sbjct: 23189095 ctggcgcattacaaaaatcgctcgaccattacgttctcgggcatctagatggacgtgcgc 23189154
Query: 344 ctgctgctgcccggcgagctggccaagcacgccgtatccgagggcaccaaggcagtcacc 403
| |||||| ||||| ||| ||||||| || || || || |||||| ||||| | |||| |
Sbjct: 23189155 cagctgcttcccggggagatggccaaacatgctgtgtctgagggcgccaagcctgtcagc 23189214
Query: 404 aagtacaccagctccaagtgag 425
||||||||||| |||||||||
Sbjct: 23189215 aagtacaccagtgccaagtgag 23189236
Score = 123 bits (62), Expect = 6e-25
Identities = 221/274 (80%)
Strand = Plus / Plus
Query: 149 gagagctattccatctacgtgtacaaggtgctgaagcaggtgcacccggacacgggcatc 208
||||||||||| ||||| | ||||||||||| ||||| || || || || || || ||
Sbjct: 21765222 gagagctattcgatctatatttacaaggtgcttaagcaagttcatccagataccggtatt 21765281
Query: 209 tcgtccaaggccatgggcatcatgaactccttcgtcaacgacatcttcgagcgcatcgcg 268
|| |||||||||||| |||||||||| || || |||| || ||||| |||||||||||
Sbjct: 21765282 tcttccaaggccatgagcatcatgaattcgtttgtcactgatatctttgagcgcatcgca 21765341
Query: 269 ggcgaagcgtcccgcctggctcattacaacaagcgctcgaccatcacgtcccgggagatc 328
|| ||||| || || |||| || |||| |||||| || || ||||| ||| | ||||||
Sbjct: 21765342 ggtgaagcatcgcgtttggcacactacagcaagcgttccactatcacttccagagagatc 21765401
Query: 329 cagacggccgtgcgcctgctgctgcccggcgagctggccaagcacgccgtatccgagggc 388
|| ||||| ||||| || ||||||| || ||| |||||||||| || || || ||||||
Sbjct: 21765402 caaacggctgtgcgtctcttgctgccgggagagttggccaagcatgcagtgtctgagggc 21765461
Query: 389 accaaggcagtcaccaagtacaccagctccaagt 422
||||| || ||||||||||| || ||||||||||
Sbjct: 21765462 accaaagctgtcaccaagtatactagctccaagt 21765495
>gb|GL896509.1| Sus scrofa unplaced genomic scaffold chrU_scaffold842
Length = 86102
Score = 299 bits (151), Expect = 4e-78
Identities = 298/347 (85%)
Strand = Plus / Plus
Query: 79 gaagggctcgaagaaagccgtcaccaaagcccagaagaaggacggcaagaagcggaagcg 138
|||||| || ||||| || || |||||||| ||||| || || ||||| ||||| |||||
Sbjct: 64181 gaagggttctaagaaggctgttaccaaagcgcagaaaaaagatggcaaaaagcgcaagcg 64240
Query: 139 cagccgcaaggagagctattccatctacgtgtacaaggtgctgaagcaggtgcacccgga 198
|||||| || || ||||||||||||||||||||||| ||| ||||||| || || || ||
Sbjct: 64241 cagccggaaagaaagctattccatctacgtgtacaaagtgttgaagcaagtacatcccga 64300
Query: 199 cacgggcatctcgtccaaggccatgggcatcatgaactccttcgtcaacgacatcttcga 258
|||||||||||| || |||||||||||||| ||||| |||||||||||||||||||| ||
Sbjct: 64301 cacgggcatctcttctaaggccatgggcataatgaattccttcgtcaacgacatctttga 64360
Query: 259 gcgcatcgcgggcgaagcgtcccgcctggctcattacaacaagcgctcgaccatcacgtc 318
||||||||| |||| || |||||| |||| || |||||||||||||| |||||||||||
Sbjct: 64361 gcgcatcgccagcgaggcttcccgcttggcgcactacaacaagcgctctaccatcacgtc 64420
Query: 319 ccgggagatccagacggccgtgcgcctgctgctgcccggcgagctggccaagcacgccgt 378
|||||| | ||||| || ||||| |||||| |||| |||||||||||||| ||||||||
Sbjct: 64421 tcgggaggtgcagacagctgtgcgtctgctgttgcctggcgagctggccaaacacgccgt 64480
Query: 379 atccgagggcaccaaggcagtcaccaagtacaccagctccaagtgag 425
|| || || ||||| || |||||||||||||| |||||||||||||
Sbjct: 64481 gtctgaaggtaccaaagccgtcaccaagtacacgagctccaagtgag 64527
>Sscrofa_Chr14
|| Length = 153851969
Score = 226 bits (114), Expect = 5e-56
Identities = 225/262 (85%)
Strand = Plus / Plus
Query: 110 cagaagaaggacggcaagaagcggaagcgcagccgcaaggagagctattccatctacgtg 169
||||||||||| |||||||||| |||| ||||| ||||||||||| ||||| ||||||
Sbjct: 48725501 cagaagaaggatggcaagaagcacaagcacagccacaaggagagctgctccatgtacgtg 48725560
Query: 170 tacaaggtgctgaagcaggtgcacccggacacgggcatctcgtccaaggccatgggcatc 229
|||||||||||||||||||| ||||| ||||| |||||||| ||||||||||||||| ||
Sbjct: 48725561 tacaaggtgctgaagcaggtccacccagacactggcatctcatccaaggccatgggcgtc 48725620
Query: 230 atgaactccttcgtcaacgacatcttcgagcgcatcgcgggcgaagcgtcccgcctggct 289
||||||||||| || ||| |||||||||||| ||| | ||| || || || | |||||
Sbjct: 48725621 atgaactcctttgttaacaacatcttcgagcacattgggggtgaggcatcacacctggtg 48725680
Query: 290 cattacaacaagcgctcgaccatcacgtcccgggagatccagacggccgtgcgcctgctg 349
||||||||||| |||| |||||||| ||| ||| ||||||||||||| || || |||||
Sbjct: 48725681 cattacaacaaatgctcaaccatcacatcctgggtgatccagacggccatgtgcttgctg 48725740
Query: 350 ctgcccggcgagctggccaagc 371
||||| || |||||||||||||
Sbjct: 48725741 ctgccaggggagctggccaagc 48725762
>Sscrofa_Chr18
|| Length = 61220071
Score = 143 bits (72), Expect = 6e-31
Identities = 99/108 (91%)
Strand = Plus / Plus
Query: 317 tcccgggagatccagacggccgtgcgcctgctgctgcccggcgagctggccaagcacgcc 376
||||||||| | |||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 6385613 tcccgggaggtgcagacggccgtgcgtctgctgctgcctggcgagctggccaagcacgct 6385672
Query: 377 gtatccgagggcaccaaggcagtcaccaagtacaccagctccaagtga 424
|| || |||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 6385673 gtgtctgagggcactaaggctgtcaccaagtacaccagctccaagtga 6385720
>Sscrofa_ChrX
|| Length = 144288218
Score = 133 bits (67), Expect = 6e-28
Identities = 139/163 (85%)
Strand = Plus / Minus
Query: 239 ttcgtcaacgacatcttcgagcgcatcgcgggcgaagcgtcccgcctggctcattacaac 298
||||| || ||||| |||||||||||||| | ||||| |||||||||| || | ||||
Sbjct: 98778113 ttcgttaaggacatgttcgagcgcatcgccgaggaagccgcccgcctggcccactccaac 98778054
Query: 299 aagcgctcgaccatcacgtcccgggagatccagacggccgtgcgcctgctgctgcccggc 358
|||||||| |||||||||||| ||||||||||||| | ||||||||||||||||||||
Sbjct: 98778053 aagcgctccaccatcacgtccagggagatccagacctcggtgcgcctgctgctgcccggg 98777994
Query: 359 gagctggccaagcacgccgtatccgagggcaccaaggcagtca 401
||||| | || ||||||||| |||| || ||||||||| ||||
Sbjct: 98777993 gagctcggcaggcacgccgtgtccgtggccaccaaggccgtca 98777951
Score = 125 bits (63), Expect = 1e-25
Identities = 138/163 (84%)
Strand = Plus / Plus
Query: 239 ttcgtcaacgacatcttcgagcgcatcgcgggcgaagcgtcccgcctggctcattacaac 298
||||| || ||||| |||||||||||||| | ||||| || ||||||| || | ||||
Sbjct: 98521124 ttcgttaaggacatgttcgagcgcatcgccgaggaagccgcctgcctggcccactccaac 98521183
Query: 299 aagcgctcgaccatcacgtcccgggagatccagacggccgtgcgcctgctgctgcccggc 358
|||||||| |||||||||||| ||||||||||||| | ||||||||||||||||||||
Sbjct: 98521184 aagcgctccaccatcacgtccagggagatccagacctcggtgcgcctgctgctgcccggg 98521243
Query: 359 gagctggccaagcacgccgtatccgagggcaccaaggcagtca 401
||||| | || ||||||||| |||| || ||||||||| ||||
Sbjct: 98521244 gagctcggcaggcacgccgtgtccgtggccaccaaggccgtca 98521286
Score = 125 bits (63), Expect = 1e-25
Identities = 138/163 (84%)
Strand = Plus / Minus
Query: 239 ttcgtcaacgacatcttcgagcgcatcgcgggcgaagcgtcccgcctggctcattacaac 298
||||| || ||||| |||||||||||||| | ||||| |||||||||| || | ||||
Sbjct: 98547514 ttcgttaaggacatgttcgagcgcatcgccgaggaagccgcccgcctggcccactccaac 98547455
Query: 299 aagcgctcgaccatcacgtcccgggagatccagacggccgtgcgcctgctgctgcccggc 358
|||||||| |||||||||||| ||||||||||||| | ||||||||||||||||||||
Sbjct: 98547454 aagcgctccaccatcacgtccagggagatccagacctcggtgcgcctgctgctgcccggg 98547395
Query: 359 gagctggccaagcacgccgtatccgagggcaccaaggcagtca 401
||||| |||||||||| | |||| || ||||||||| ||||
Sbjct: 98547394 gagctccgcaagcacgccatgtccgtggccaccaaggccgtca 98547352
Score = 125 bits (63), Expect = 1e-25
Identities = 138/163 (84%)
Strand = Plus / Plus
Query: 239 ttcgtcaacgacatcttcgagcgcatcgcgggcgaagcgtcccgcctggctcattacaac 298
||||| || ||||| |||||||||||||| | ||||| |||||||||| || | ||||
Sbjct: 98752812 ttcgttaaggacatgttcgagcgcatcgccgaggaagccgcccgcctggcccactccaac 98752871
Query: 299 aagcgctcgaccatcacgtcccgggagatccagacggccgtgcgcctgctgctgcccggc 358
|||||||| |||||||||||| ||||||||||||| | ||||||||||||||||||||
Sbjct: 98752872 aagcgctccaccatcacgtccagggagatccagacctcggtgcgcctgctgctgcccggg 98752931
Query: 359 gagctggccaagcacgccgtatccgagggcaccaaggcagtca 401
||||| |||||||||| | |||| || ||||||||| ||||
Sbjct: 98752932 gagctccgcaagcacgccatgtccgtggccaccaaggccgtca 98752974
>gb|GL896030.1| Sus scrofa unplaced genomic scaffold chrU_scaffold4536
Length = 16885
Score = 115 bits (58), Expect = 1e-22
Identities = 94/106 (88%)
Strand = Plus / Plus
Query: 77 aagaagggctcgaagaaagccgtcaccaaagcccagaagaaggacggcaagaagcggaag 136
||||||||||| || || || || ||||| || |||||||| |||||||||||||| |||
Sbjct: 501 aagaagggctccaaaaaggctgtgaccaaggcgcagaagaaagacggcaagaagcgcaag 560
Query: 137 cgcagccgcaaggagagctattccatctacgtgtacaaggtgctga 182
||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct: 561 cgcagtcgcaaggagagttactccatctacgtgtacaaggtgctga 606
Score = 75.8 bits (38), Expect = 1e-10
Identities = 74/86 (86%)
Strand = Plus / Plus
Query: 188 gtgcacccggacacgggcatctcgtccaaggccatgggcatcatgaactccttcgtcaac 247
||||||||||| || ||||| || |||||||| |||||||||||||| || ||||| ||
Sbjct: 708 gtgcacccggataccggcatttcctccaaggctatgggcatcatgaattcgttcgttaat 767
Query: 248 gacatcttcgagcgcatcgcgggcga 273
||||| ||||| |||||||| |||||
Sbjct: 768 gacattttcgaacgcatcgctggcga 793
>gb|GL893849.1| Sus scrofa unplaced genomic scaffold chrU_scaffold2573
Length = 41526
Score = 99.6 bits (50), Expect = 8e-18
Identities = 86/98 (87%)
Strand = Plus / Plus
Query: 43 aatgcctgagccagcaaaatctgctcccgcgcccaagaagggctcgaagaaagccgtcac 102
||||||||| ||||| ||||||||||| || ||||| |||||||| ||||||||||| ||
Sbjct: 16574 aatgcctgaaccagcgaaatctgctccagcccccaaaaagggctccaagaaagccgtgac 16633
Query: 103 caaagcccagaagaaggacggcaagaagcggaagcgca 140
||| || |||||||| || ||||||||||| |||||||
Sbjct: 16634 caaggcgcagaagaaagatggcaagaagcgcaagcgca 16671
Score = 87.7 bits (44), Expect = 3e-14
Identities = 56/60 (93%)
Strand = Plus / Minus
Query: 363 tggccaagcacgccgtatccgagggcaccaaggcagtcaccaagtacaccagctccaagt 422
|||||||||||||||| || |||||||||||||| || ||||||||||||||||||||||
Sbjct: 35334 tggccaagcacgccgtgtctgagggcaccaaggccgttaccaagtacaccagctccaagt 35275
Score = 63.9 bits (32), Expect = 4e-07
Identities = 62/72 (86%)
Strand = Plus / Minus
Query: 43 aatgcctgagccagcaaaatctgctcccgcgcccaagaagggctcgaagaaagccgtcac 102
||||||||| ||| | ||||||||||| || || ||||||||||| ||||||||||| ||
Sbjct: 35513 aatgcctgaaccaacgaaatctgctccagccccgaagaagggctccaagaaagccgtgac 35454
Query: 103 caaagcccagaa 114
||| || |||||
Sbjct: 35453 caaggcgcagaa 35442
>Sscrofa_Chr06
|| Length = 157765593
Score = 67.9 bits (34), Expect = 3e-08
Identities = 101/122 (82%), Gaps = 1/122 (0%)
Strand = Plus / Plus
Query: 114 agaaggacggcaagaagcggaagcgcagccgcaaggagagctattccatctacgtgtaca 173
||||||||||||| |||| ||| |||||||| ||||||||| || | | | ||||
Sbjct: 56929291 agaaggacggcaaagagcgcaagtgcagccgcgaggagagctcctcgctgttcatgtagg 56929350
Query: 174 aggtgctgaagcaggtgcacccggacacgggcatctcgtccaaggccatgggcatcatga 233
||||||||| |||||||| ||| ||||| ||| ||||||||||||||| ||||||| |||
Sbjct: 56929351 aggtgctgacgcaggtgc-cccagacaccggcgtctcgtccaaggccacgggcatcgtga 56929409
Query: 234 ac 235
||
Sbjct: 56929410 ac 56929411
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 77,307,634
Number of extensions: 1008
Number of successful extensions: 1008
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 995
Number of HSP's successfully gapped: 40
Length of query: 2817
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2795
Effective length of database: 2,808,408,574
Effective search space: 7849501964330
Effective search space used: 7849501964330
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)