Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012734
(1226 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533804.2| PREDICTED: similar to 5-aminolevulinate synthas... 533 e-162
Alignment gi|XP_859921.1| PREDICTED: similar to 5-aminolevulinate synthas... 489 e-149
Alignment gi|XP_859886.1| PREDICTED: similar to 5-aminolevulinate synthas... 484 e-147
Alignment gi|XP_859846.1| PREDICTED: similar to 5-aminolevulinate synthas... 481 e-146
Alignment gi|XP_859816.1| PREDICTED: similar to 5-aminolevulinate synthas... 466 e-142
Alignment gi|XP_859784.1| PREDICTED: similar to 5-aminolevulinate synthas... 459 e-140
Alignment gi|XP_548619.2| PREDICTED: similar to 5-aminolevulinate synthas... 155 2e-47
>ref|XP_533804.2| PREDICTED: similar to 5-aminolevulinate synthase, nonspecific,
mitochondrial precursor (5-aminolevulinic acid synthase)
(Delta-aminolevulinate synthase) (Delta-ALA synthetase)
(ALAS-H) isoform 1 [Canis familiaris].
Length = 640
Score = 533 bits (1373), Expect(2) = e-162
Identities = 266/308 (86%), Positives = 280/308 (90%)
Frame = +2
Query: 188 METVVRRCPFLSRVPQAFLQKAGKSLLFYAQNCPKMMEVGVKPAPRALSTSSVLCHQVKE 367
METVVRRCPFLSRVPQAFLQKAGKSLLFYAQNCPKMME+G KPAPRALSTS+V C QVKE
Sbjct: 1 METVVRRCPFLSRVPQAFLQKAGKSLLFYAQNCPKMMEIGAKPAPRALSTSAVHCQQVKE 60
Query: 368 TPPANEKDKTAKAEVQQAPDGSQRTPDGTQLPTGHPSPASSQSTASKCPFLAAQMSQGGS 547
TPPANEKDKTAKAEVQQ DGSQ+TPDGTQLP+GH S A+SQ TASKCPFLAAQMSQ GS
Sbjct: 61 TPPANEKDKTAKAEVQQTADGSQQTPDGTQLPSGHSSLATSQGTASKCPFLAAQMSQKGS 120
Query: 548 SVFRKASLELQEDVQEMHAVREEVAQTSVNPSVINVKTDGGEPSGLLKNFQDIMRKQRPE 727
SVFRKASLELQEDVQEMHAVR+EVAQTSVNPSVI+VK DGG+PSGLL+NFQDIMRKQRPE
Sbjct: 121 SVFRKASLELQEDVQEMHAVRKEVAQTSVNPSVISVKADGGDPSGLLRNFQDIMRKQRPE 180
Query: 728 GVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRKAQCFPMADDYSDSLV 907
VSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNR+A FPMADDYSDSL+
Sbjct: 181 RVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRRAHIFPMADDYSDSLI 240
Query: 908 SKRQVSVWCSNDYLGMSRHPRVCGAVIDTLKHMVLELGVLETFLELSKFHVDLEQELADL 1087
+K+QVSVWCSNDYLGMSRHPRVCGAV+DTLK G SKFHVDLEQELADL
Sbjct: 241 TKKQVSVWCSNDYLGMSRHPRVCGAVMDTLKQHGAGAGGTRNISGTSKFHVDLEQELADL 300
Query: 1088 HGKDAATL 1111
HGKDAA L
Sbjct: 301 HGKDAALL 308
Score = 58.5 bits (140), Expect(2) = e-162
Identities = 29/45 (64%), Positives = 32/45 (71%)
Frame = +3
Query: 1092 GKMQPLLFSPGFGGNEPTLFTLGKMMPGWENYSDSGNHGPLIQGI 1226
GK LLFS F N+ TLFTL +MMPG E YSDSGNH +IQGI
Sbjct: 302 GKDAALLFSSCFVANDSTLFTLARMMPGCEIYSDSGNHASMIQGI 346
>ref|XP_859921.1| PREDICTED: similar to 5-aminolevulinate synthase, nonspecific,
mitochondrial precursor (5-aminolevulinic acid synthase)
(Delta-aminolevulinate synthase) (Delta-ALA synthetase)
(ALAS-H) isoform 6 [Canis familiaris].
Length = 623
Score = 489 bits (1258), Expect(2) = e-149
Identities = 249/308 (80%), Positives = 263/308 (85%)
Frame = +2
Query: 188 METVVRRCPFLSRVPQAFLQKAGKSLLFYAQNCPKMMEVGVKPAPRALSTSSVLCHQVKE 367
METVVRRCPFLSRVPQAFLQKAGKSLLFYAQNCPKMME+G KPAPRALSTS+V C QV
Sbjct: 1 METVVRRCPFLSRVPQAFLQKAGKSLLFYAQNCPKMMEIGAKPAPRALSTSAVHCQQV-- 58
Query: 368 TPPANEKDKTAKAEVQQAPDGSQRTPDGTQLPTGHPSPASSQSTASKCPFLAAQMSQGGS 547
QQ DGSQ+TPDGTQLP+GH S A+SQ TASKCPFLAAQMSQ GS
Sbjct: 59 ---------------QQTADGSQQTPDGTQLPSGHSSLATSQGTASKCPFLAAQMSQKGS 103
Query: 548 SVFRKASLELQEDVQEMHAVREEVAQTSVNPSVINVKTDGGEPSGLLKNFQDIMRKQRPE 727
SVFRKASLELQEDVQEMHAVR+EVAQTSVNPSVI+VK DGG+PSGLL+NFQDIMRKQRPE
Sbjct: 104 SVFRKASLELQEDVQEMHAVRKEVAQTSVNPSVISVKADGGDPSGLLRNFQDIMRKQRPE 163
Query: 728 GVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRKAQCFPMADDYSDSLV 907
VSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNR+A FPMADDYSDSL+
Sbjct: 164 RVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRRAHIFPMADDYSDSLI 223
Query: 908 SKRQVSVWCSNDYLGMSRHPRVCGAVIDTLKHMVLELGVLETFLELSKFHVDLEQELADL 1087
+K+QVSVWCSNDYLGMSRHPRVCGAV+DTLK G SKFHVDLEQELADL
Sbjct: 224 TKKQVSVWCSNDYLGMSRHPRVCGAVMDTLKQHGAGAGGTRNISGTSKFHVDLEQELADL 283
Query: 1088 HGKDAATL 1111
HGKDAA L
Sbjct: 284 HGKDAALL 291
Score = 58.5 bits (140), Expect(2) = e-149
Identities = 29/45 (64%), Positives = 32/45 (71%)
Frame = +3
Query: 1092 GKMQPLLFSPGFGGNEPTLFTLGKMMPGWENYSDSGNHGPLIQGI 1226
GK LLFS F N+ TLFTL +MMPG E YSDSGNH +IQGI
Sbjct: 285 GKDAALLFSSCFVANDSTLFTLARMMPGCEIYSDSGNHASMIQGI 329
>ref|XP_859886.1| PREDICTED: similar to 5-aminolevulinate synthase, nonspecific,
mitochondrial precursor (5-aminolevulinic acid synthase)
(Delta-aminolevulinate synthase) (Delta-ALA synthetase)
(ALAS-H) isoform 5 [Canis familiaris].
Length = 625
Score = 484 bits (1247), Expect(2) = e-147
Identities = 249/308 (80%), Positives = 265/308 (86%)
Frame = +2
Query: 188 METVVRRCPFLSRVPQAFLQKAGKSLLFYAQNCPKMMEVGVKPAPRALSTSSVLCHQVKE 367
METVVRRCPFLSRVPQAFLQKAGKSLLFYAQNCPKMME+G KPAPRALSTS+V C QVKE
Sbjct: 1 METVVRRCPFLSRVPQAFLQKAGKSLLFYAQNCPKMMEIGAKPAPRALSTSAVHCQQVKE 60
Query: 368 TPPANEKDKTAKAEVQQAPDGSQRTPDGTQLPTGHPSPASSQSTASKCPFLAAQMSQGGS 547
TPPANEK +T +AE +LP+GH S A+SQ TASKCPFLAAQMSQ GS
Sbjct: 61 TPPANEKAET-QAE--------------GELPSGHSSLATSQGTASKCPFLAAQMSQKGS 105
Query: 548 SVFRKASLELQEDVQEMHAVREEVAQTSVNPSVINVKTDGGEPSGLLKNFQDIMRKQRPE 727
SVFRKASLELQEDVQEMHAVR+EVAQTSVNPSVI+VK DGG+PSGLL+NFQDIMRKQRPE
Sbjct: 106 SVFRKASLELQEDVQEMHAVRKEVAQTSVNPSVISVKADGGDPSGLLRNFQDIMRKQRPE 165
Query: 728 GVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRKAQCFPMADDYSDSLV 907
VSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNR+A FPMADDYSDSL+
Sbjct: 166 RVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRRAHIFPMADDYSDSLI 225
Query: 908 SKRQVSVWCSNDYLGMSRHPRVCGAVIDTLKHMVLELGVLETFLELSKFHVDLEQELADL 1087
+K+QVSVWCSNDYLGMSRHPRVCGAV+DTLK G SKFHVDLEQELADL
Sbjct: 226 TKKQVSVWCSNDYLGMSRHPRVCGAVMDTLKQHGAGAGGTRNISGTSKFHVDLEQELADL 285
Query: 1088 HGKDAATL 1111
HGKDAA L
Sbjct: 286 HGKDAALL 293
Score = 58.5 bits (140), Expect(2) = e-147
Identities = 29/45 (64%), Positives = 32/45 (71%)
Frame = +3
Query: 1092 GKMQPLLFSPGFGGNEPTLFTLGKMMPGWENYSDSGNHGPLIQGI 1226
GK LLFS F N+ TLFTL +MMPG E YSDSGNH +IQGI
Sbjct: 287 GKDAALLFSSCFVANDSTLFTLARMMPGCEIYSDSGNHASMIQGI 331
>ref|XP_859846.1| PREDICTED: similar to 5-aminolevulinate synthase, nonspecific,
mitochondrial precursor (5-aminolevulinic acid synthase)
(Delta-aminolevulinate synthase) (Delta-ALA synthetase)
(ALAS-H) isoform 4 [Canis familiaris].
Length = 642
Score = 481 bits (1237), Expect(2) = e-146
Identities = 252/322 (78%), Positives = 264/322 (81%), Gaps = 14/322 (4%)
Frame = +2
Query: 188 METVVRRCPFLSRVPQAFLQKAGKSLLFYAQNCPKMMEVGVKPAPRALSTSSVLCHQVKE 367
METVVRRCPFLSRVPQAFLQKAGKSLLFYAQNCPKMME+G KPAPRALSTS+V C QVKE
Sbjct: 1 METVVRRCPFLSRVPQAFLQKAGKSLLFYAQNCPKMMEIGAKPAPRALSTSAVHCQQVKE 60
Query: 368 TPPANEKDKTAKAEVQQAPDGSQRTP--DGTQLPTGHPSPASSQSTASKCPFLAAQMSQG 541
TPPANE TP DGTQLP+GH S A+SQ TASKCPFLAAQMSQ
Sbjct: 61 TPPANESKFVIL------------TPQVDGTQLPSGHSSLATSQGTASKCPFLAAQMSQK 108
Query: 542 GSSVFRKASLELQEDVQEMHAVR------------EEVAQTSVNPSVINVKTDGGEPSGL 685
GSSVFRKASLELQEDVQEMHAVR EEVAQTSVNPSVI+VK DGG+PSGL
Sbjct: 109 GSSVFRKASLELQEDVQEMHAVRKGKHMTGTIRKNEEVAQTSVNPSVISVKADGGDPSGL 168
Query: 686 LKNFQDIMRKQRPEGVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRKA 865
L+NFQDIMRKQRPE VSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNR+A
Sbjct: 169 LRNFQDIMRKQRPERVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRRA 228
Query: 866 QCFPMADDYSDSLVSKRQVSVWCSNDYLGMSRHPRVCGAVIDTLKHMVLELGVLETFLEL 1045
FPMADDYSDSL++K+QVSVWCSNDYLGMSRHPRVCGAV+DTLK G
Sbjct: 229 HIFPMADDYSDSLITKKQVSVWCSNDYLGMSRHPRVCGAVMDTLKQHGAGAGGTRNISGT 288
Query: 1046 SKFHVDLEQELADLHGKDAATL 1111
SKFHVDLEQELADLHGKDAA L
Sbjct: 289 SKFHVDLEQELADLHGKDAALL 310
Score = 58.5 bits (140), Expect(2) = e-146
Identities = 29/45 (64%), Positives = 32/45 (71%)
Frame = +3
Query: 1092 GKMQPLLFSPGFGGNEPTLFTLGKMMPGWENYSDSGNHGPLIQGI 1226
GK LLFS F N+ TLFTL +MMPG E YSDSGNH +IQGI
Sbjct: 304 GKDAALLFSSCFVANDSTLFTLARMMPGCEIYSDSGNHASMIQGI 348
>ref|XP_859816.1| PREDICTED: similar to 5-aminolevulinate synthase, nonspecific,
mitochondrial precursor (5-aminolevulinic acid synthase)
(Delta-aminolevulinate synthase) (Delta-ALA synthetase)
(ALAS-H) isoform 3 [Canis familiaris].
Length = 628
Score = 466 bits (1199), Expect(2) = e-142
Identities = 240/308 (77%), Positives = 255/308 (82%)
Frame = +2
Query: 188 METVVRRCPFLSRVPQAFLQKAGKSLLFYAQNCPKMMEVGVKPAPRALSTSSVLCHQVKE 367
METVVRRCPFLSRVPQAFLQKAGKSLLFYAQNCPKMME+G KPAPRALSTS+
Sbjct: 1 METVVRRCPFLSRVPQAFLQKAGKSLLFYAQNCPKMMEIGAKPAPRALSTSAT------- 53
Query: 368 TPPANEKDKTAKAEVQQAPDGSQRTPDGTQLPTGHPSPASSQSTASKCPFLAAQMSQGGS 547
+EVQQ DGSQ+TPDGTQLP+GH S A+SQ TASKCPFLAAQMSQ GS
Sbjct: 54 ----RSTSSPQWSEVQQTADGSQQTPDGTQLPSGHSSLATSQGTASKCPFLAAQMSQKGS 109
Query: 548 SVFRKASLELQEDVQEMHAVREEVAQTSVNPSVINVKTDGGEPSGLLKNFQDIMRKQRPE 727
SVFRKASLELQEDVQEMHAVR+ T PSVI+VK DGG+PSGLL+NFQDIMRKQRPE
Sbjct: 110 SVFRKASLELQEDVQEMHAVRKGKHMTGT-PSVISVKADGGDPSGLLRNFQDIMRKQRPE 168
Query: 728 GVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRKAQCFPMADDYSDSLV 907
VSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNR+A FPMADDYSDSL+
Sbjct: 169 RVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRRAHIFPMADDYSDSLI 228
Query: 908 SKRQVSVWCSNDYLGMSRHPRVCGAVIDTLKHMVLELGVLETFLELSKFHVDLEQELADL 1087
+K+QVSVWCSNDYLGMSRHPRVCGAV+DTLK G SKFHVDLEQELADL
Sbjct: 229 TKKQVSVWCSNDYLGMSRHPRVCGAVMDTLKQHGAGAGGTRNISGTSKFHVDLEQELADL 288
Query: 1088 HGKDAATL 1111
HGKDAA L
Sbjct: 289 HGKDAALL 296
Score = 58.5 bits (140), Expect(2) = e-142
Identities = 29/45 (64%), Positives = 32/45 (71%)
Frame = +3
Query: 1092 GKMQPLLFSPGFGGNEPTLFTLGKMMPGWENYSDSGNHGPLIQGI 1226
GK LLFS F N+ TLFTL +MMPG E YSDSGNH +IQGI
Sbjct: 290 GKDAALLFSSCFVANDSTLFTLARMMPGCEIYSDSGNHASMIQGI 334
>ref|XP_859784.1| PREDICTED: similar to 5-aminolevulinate synthase, nonspecific,
mitochondrial precursor (5-aminolevulinic acid synthase)
(Delta-aminolevulinate synthase) (Delta-ALA synthetase)
(ALAS-H) isoform 2 [Canis familiaris].
Length = 629
Score = 459 bits (1182), Expect(2) = e-140
Identities = 240/308 (77%), Positives = 253/308 (82%)
Frame = +2
Query: 188 METVVRRCPFLSRVPQAFLQKAGKSLLFYAQNCPKMMEVGVKPAPRALSTSSVLCHQVKE 367
METVVRRCPFLSRVPQAFLQKAGKSLLFYAQNCPKMME+G KPAPRALSTS+V C QVKE
Sbjct: 1 METVVRRCPFLSRVPQAFLQKAGKSLLFYAQNCPKMMEIGAKPAPRALSTSAVHCQQVKE 60
Query: 368 TPPANEKDKTAKAEVQQAPDGSQRTPDGTQLPTGHPSPASSQSTASKCPFLAAQMSQGGS 547
TPPANE E GS DGTQLP+GH S A+SQ TASKCPFLAAQMSQ GS
Sbjct: 61 TPPANENFNKNSIE------GSL---DGTQLPSGHSSLATSQGTASKCPFLAAQMSQKGS 111
Query: 548 SVFRKASLELQEDVQEMHAVREEVAQTSVNPSVINVKTDGGEPSGLLKNFQDIMRKQRPE 727
SVFRKASLELQEDVQEMHAVR+ T N + DGG+PSGLL+NFQDIMRKQRPE
Sbjct: 112 SVFRKASLELQEDVQEMHAVRKGKHMTGTIRK--NEEADGGDPSGLLRNFQDIMRKQRPE 169
Query: 728 GVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRKAQCFPMADDYSDSLV 907
VSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNR+A FPMADDYSDSL+
Sbjct: 170 RVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRRAHIFPMADDYSDSLI 229
Query: 908 SKRQVSVWCSNDYLGMSRHPRVCGAVIDTLKHMVLELGVLETFLELSKFHVDLEQELADL 1087
+K+QVSVWCSNDYLGMSRHPRVCGAV+DTLK G SKFHVDLEQELADL
Sbjct: 230 TKKQVSVWCSNDYLGMSRHPRVCGAVMDTLKQHGAGAGGTRNISGTSKFHVDLEQELADL 289
Query: 1088 HGKDAATL 1111
HGKDAA L
Sbjct: 290 HGKDAALL 297
Score = 58.5 bits (140), Expect(2) = e-140
Identities = 29/45 (64%), Positives = 32/45 (71%)
Frame = +3
Query: 1092 GKMQPLLFSPGFGGNEPTLFTLGKMMPGWENYSDSGNHGPLIQGI 1226
GK LLFS F N+ TLFTL +MMPG E YSDSGNH +IQGI
Sbjct: 291 GKDAALLFSSCFVANDSTLFTLARMMPGCEIYSDSGNHASMIQGI 335
>ref|XP_548619.2| PREDICTED: similar to 5-aminolevulinate synthase, erythroid-specific,
mitochondrial precursor (5-aminolevulinic acid synthase)
(Delta-aminolevulinate synthase) (Delta-ALA synthetase)
(ALAS-E) [Canis familiaris].
Length = 587
Score = 155 bits (392), Expect(2) = 2e-47
Identities = 88/203 (43%), Positives = 120/203 (59%)
Frame = +2
Query: 503 SKCPFLAAQMSQGGSSVFRKASLELQEDVQEMHAVREEVAQTSVNPSVINVKTDGGEPSG 682
S CPF+ +++ G S + +KA+ E+QEDV+ +P+ +++ P
Sbjct: 68 SPCPFMLSELQDGKSKIVQKAAPEVQEDVKTFKT------DLPRSPASTSLRKPFSNPQE 121
Query: 683 LLKNFQDIMRKQRPEGVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRK 862
L + E V+HL+Q+N+ + F YD+FF KI EKK DHTYRVFKTVNR
Sbjct: 122 L---------ELISEKVTHLVQNNMIGN-HVFGYDQFFRHKIMEKKQDHTYRVFKTVNRW 171
Query: 863 AQCFPMADDYSDSLVSKRQVSVWCSNDYLGMSRHPRVCGAVIDTLKHMVLELGVLETFLE 1042
A +P A +S++ ++ + VSVWCSNDYLGMSRHPRV A +TL+ G
Sbjct: 172 ADAYPFAQHFSEASMASKDVSVWCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISG 231
Query: 1043 LSKFHVDLEQELADLHGKDAATL 1111
SKFHV+LEQELA+LH KDAA L
Sbjct: 232 TSKFHVELEQELAELHQKDAALL 254
Score = 53.5 bits (127), Expect(2) = 2e-47
Identities = 25/40 (62%), Positives = 30/40 (75%)
Frame = +3
Query: 1107 LLFSPGFGGNEPTLFTLGKMMPGWENYSDSGNHGPLIQGI 1226
LLFS F N+ TLFTL K++PG E YSD+GNH +IQGI
Sbjct: 253 LLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGI 292
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 54,027,298
Number of extensions: 1609612
Number of successful extensions: 7093
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 7041
Number of HSP's successfully gapped: 14
Length of query: 408
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 303
Effective length of database: 15,374,224
Effective search space: 4658389872
Effective search space used: 4658389872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012734
(1226 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001094624.1| 5-aminolevulinate synthase, nonspecific, mit... 536 e-163
Alignment gi|NP_001030275.1| 5-aminolevulinate synthase, erythroid-specif... 155 1e-47
>ref|NP_001094624.1| 5-aminolevulinate synthase, nonspecific, mitochondrial precursor [Bos
taurus].
Length = 647
Score = 536 bits (1382), Expect(2) = e-163
Identities = 271/315 (86%), Positives = 281/315 (89%), Gaps = 7/315 (2%)
Frame = +2
Query: 188 METVVRRCPFLSRVPQAFLQKAGKSLLFYAQNCPKMMEVGVKPAPRALSTSSVLCHQVKE 367
METVVRRCPFLSRVPQAFLQKAGKSLLFYAQNCPKMME+G KPAPRALSTS+VLC QV E
Sbjct: 1 METVVRRCPFLSRVPQAFLQKAGKSLLFYAQNCPKMMEIGAKPAPRALSTSAVLCQQVTE 60
Query: 368 TPPANEKDKTAKAEVQQAPDGSQRTPDG-------TQLPTGHPSPASSQSTASKCPFLAA 526
TPPANEKDK AKAEVQQAPDGSQ+ PDG TQLP+GHPS ASSQ T SKCPFLAA
Sbjct: 61 TPPANEKDKAAKAEVQQAPDGSQQAPDGSQQTADGTQLPSGHPSLASSQGTGSKCPFLAA 120
Query: 527 QMSQGGSSVFRKASLELQEDVQEMHAVREEVAQTSVNPSVINVKTDGGEPSGLLKNFQDI 706
+MSQGGSSVFRKASL LQEDVQEMHAVREEVAQTSVNPSVINVKT+GGE +GLLKNFQDI
Sbjct: 121 EMSQGGSSVFRKASLALQEDVQEMHAVREEVAQTSVNPSVINVKTEGGELNGLLKNFQDI 180
Query: 707 MRKQRPEGVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRKAQCFPMAD 886
MRKQRPE VSHLLQDNLPKSV TFQYDRFFEKKIDEKKNDH+YRVFKTVNRKAQCFPMAD
Sbjct: 181 MRKQRPERVSHLLQDNLPKSVCTFQYDRFFEKKIDEKKNDHSYRVFKTVNRKAQCFPMAD 240
Query: 887 DYSDSLVSKRQVSVWCSNDYLGMSRHPRVCGAVIDTLKHMVLELGVLETFLELSKFHVDL 1066
DYSDSL+SK+QVSVWCSNDYLGMSRHPRVCGAVIDTLK G SKFHVDL
Sbjct: 241 DYSDSLISKKQVSVWCSNDYLGMSRHPRVCGAVIDTLKQHGTGAGGTRNISGTSKFHVDL 300
Query: 1067 EQELADLHGKDAATL 1111
EQELADLHGKDAA L
Sbjct: 301 EQELADLHGKDAALL 315
Score = 58.5 bits (140), Expect(2) = e-163
Identities = 29/45 (64%), Positives = 32/45 (71%)
Frame = +3
Query: 1092 GKMQPLLFSPGFGGNEPTLFTLGKMMPGWENYSDSGNHGPLIQGI 1226
GK LLFS F N+ TLFTL KMMPG E YSD+GNH +IQGI
Sbjct: 309 GKDAALLFSSCFVANDSTLFTLAKMMPGCEIYSDAGNHASMIQGI 353
>ref|NP_001030275.1| 5-aminolevulinate synthase, erythroid-specific, mitochondrial
precursor [Bos taurus].
Length = 587
Score = 155 bits (393), Expect(2) = 1e-47
Identities = 94/232 (40%), Positives = 129/232 (55%)
Frame = +2
Query: 416 QAPDGSQRTPDGTQLPTGHPSPASSQSTASKCPFLAAQMSQGGSSVFRKASLELQEDVQE 595
Q P SQ T+ PS A S CPF+ ++ G S + +KA+ E+QEDV+
Sbjct: 44 QGPSFSQIHLKATKAGGDSPSWAKSH-----CPFMLLELQDGKSKIVQKAAPEVQEDVKT 98
Query: 596 MHAVREEVAQTSVNPSVINVKTDGGEPSGLLKNFQDIMRKQRPEGVSHLLQDNLPKSVST 775
+ ++ + + S+ + EP ++ E V+HL+Q+N+
Sbjct: 99 F---KTDLPTSLASTSLKKTFSSPQEP------------EKNSEKVTHLIQNNMAGD-HV 142
Query: 776 FQYDRFFEKKIDEKKNDHTYRVFKTVNRKAQCFPMADDYSDSLVSKRQVSVWCSNDYLGM 955
F YD+FF KI EKK DHTYRVFKTVNR A +P A+ + ++ V+ + VSVWCSNDYLGM
Sbjct: 143 FGYDQFFRDKIMEKKQDHTYRVFKTVNRWADAYPFAEHFFEASVASKDVSVWCSNDYLGM 202
Query: 956 SRHPRVCGAVIDTLKHMVLELGVLETFLELSKFHVDLEQELADLHGKDAATL 1111
SRHPRV A + L+ G SKFHV+LEQELA+LH KD+A L
Sbjct: 203 SRHPRVLQATQEILQRHGAGAGGTRNISGTSKFHVELEQELAELHQKDSALL 254
Score = 53.9 bits (128), Expect(2) = 1e-47
Identities = 26/44 (59%), Positives = 31/44 (70%)
Frame = +3
Query: 1095 KMQPLLFSPGFGGNEPTLFTLGKMMPGWENYSDSGNHGPLIQGI 1226
K LLFS F N+ TLFTL K++PG E YSD+GNH +IQGI
Sbjct: 249 KDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGI 292
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 51,817,749
Number of extensions: 1570598
Number of successful extensions: 6749
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6691
Number of HSP's successfully gapped: 4
Length of query: 408
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 303
Effective length of database: 14,207,134
Effective search space: 4304761602
Effective search space used: 4304761602
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012734
(1226 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003132298.1| PREDICTED: 5-aminolevulinate synthase, nonsp... 355 e-109
Alignment gi|XP_003360385.1| PREDICTED: 5-aminolevulinate synthase, eryth... 157 2e-48
Alignment gi|XP_003360387.1| PREDICTED: 5-aminolevulinate synthase, eryth... 134 2e-41
Alignment gi|XP_003360386.1| PREDICTED: 5-aminolevulinate synthase, eryth... 134 2e-41
>ref|XP_003132298.1| PREDICTED: 5-aminolevulinate synthase, nonspecific,
mitochondrial-like isoform 1 [Sus scrofa].
Length = 526
Score = 355 bits (912), Expect(2) = e-109
Identities = 179/194 (92%), Positives = 179/194 (92%)
Frame = +2
Query: 530 MSQGGSSVFRKASLELQEDVQEMHAVREEVAQTSVNPSVINVKTDGGEPSGLLKNFQDIM 709
MSQGGSSVFRKASLELQEDVQEMHAVREEVAQTSVNPSVINVKTDGGEPSGLLKNFQDIM
Sbjct: 1 MSQGGSSVFRKASLELQEDVQEMHAVREEVAQTSVNPSVINVKTDGGEPSGLLKNFQDIM 60
Query: 710 RKQRPEGVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRKAQCFPMADD 889
RKQRPEGVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRKAQCFPMADD
Sbjct: 61 RKQRPEGVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRKAQCFPMADD 120
Query: 890 YSDSLVSKRQVSVWCSNDYLGMSRHPRVCGAVIDTLKHMVLELGVLETFLELSKFHVDLE 1069
YSDSLVSKRQVSVWCSNDYLGMSRHPRVCGAVIDTLK G SKFHVDLE
Sbjct: 121 YSDSLVSKRQVSVWCSNDYLGMSRHPRVCGAVIDTLKQYGTGAGGTRNISGTSKFHVDLE 180
Query: 1070 QELADLHGKDAATL 1111
QELADLHGKDAA L
Sbjct: 181 QELADLHGKDAALL 194
Score = 59.7 bits (143), Expect(2) = e-109
Identities = 30/45 (66%), Positives = 32/45 (71%)
Frame = +3
Query: 1092 GKMQPLLFSPGFGGNEPTLFTLGKMMPGWENYSDSGNHGPLIQGI 1226
GK LLFS F N+ TLFTL KMMPG E YSDSGNH +IQGI
Sbjct: 188 GKDAALLFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGI 232
>ref|XP_003360385.1| PREDICTED: 5-aminolevulinate synthase, erythroid-specific,
mitochondrial-like isoform 1 [Sus scrofa].
Length = 587
Score = 157 bits (397), Expect(2) = 2e-48
Identities = 111/308 (36%), Positives = 155/308 (50%), Gaps = 3/308 (0%)
Frame = +2
Query: 197 VVRRCPFLSRVPQAFLQKAGKS--LLFYAQNCPKMMEVGVKPAPRALSTSSVLCHQVKET 370
+++RCP L R P L K K+ LF CP L+T C Q+
Sbjct: 7 LLQRCPVLIRGPTGLLGKMIKTHQFLFGIGRCP------------ILATQGPTCSQIHL- 53
Query: 371 PPANEKDKTAKAEVQQAPDGSQRTPDGTQLPTGHPSPASSQSTASKCPFLAAQMSQGGSS 550
K KA G SP+ ++S CPF+ +++ G S
Sbjct: 54 -------KATKA--------------------GGDSPSWAKS---HCPFMLSELQDGKSK 83
Query: 551 VFRKASLELQEDVQEMHAVREEVAQTSVNPSVINVKTDGGEPSGLLKNFQDIMRKQR-PE 727
+ +KA+ E+QEDV+ +T + S+ + + L K F ++ +
Sbjct: 84 IVQKAAPEVQEDVKTF--------KTDLPISLAS--------ASLKKPFSSAQDPEKNSK 127
Query: 728 GVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRKAQCFPMADDYSDSLV 907
V+HL+Q+N+P + F YD+FF KI EKK DHTYRVFKTVNR A +P A+ + ++ V
Sbjct: 128 KVTHLIQNNMPGN-HFFGYDQFFRDKIMEKKQDHTYRVFKTVNRWADAYPFAEHFFEASV 186
Query: 908 SKRQVSVWCSNDYLGMSRHPRVCGAVIDTLKHMVLELGVLETFLELSKFHVDLEQELADL 1087
+ VSVWCSNDYLGMSRHPRV A +TL+ G SKFHV++EQELA+L
Sbjct: 187 PSKDVSVWCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVEQELAEL 246
Query: 1088 HGKDAATL 1111
H KD+A L
Sbjct: 247 HQKDSALL 254
Score = 53.9 bits (128), Expect(2) = 2e-48
Identities = 26/44 (59%), Positives = 31/44 (70%)
Frame = +3
Query: 1095 KMQPLLFSPGFGGNEPTLFTLGKMMPGWENYSDSGNHGPLIQGI 1226
K LLFS F N+ TLFTL K++PG E YSD+GNH +IQGI
Sbjct: 249 KDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGI 292
>ref|XP_003360387.1| PREDICTED: 5-aminolevulinate synthase, erythroid-specific,
mitochondrial-like isoform 3 [Sus scrofa].
Length = 550
Score = 134 bits (337), Expect(2) = 2e-41
Identities = 74/159 (46%), Positives = 95/159 (59%), Gaps = 10/159 (6%)
Frame = +2
Query: 665 GGEPSGLLKNFQDIMRKQRPEGVSHLLQDNLPK---SVSTFQ-------YDRFFEKKIDE 814
GG+ K+ M + +G S ++Q P+ V TF+ YD+FF KI E
Sbjct: 59 GGDSPSWAKSHCPFMLSELQDGKSKIVQKAAPEVQEDVKTFKTGNHFFGYDQFFRDKIME 118
Query: 815 KKNDHTYRVFKTVNRKAQCFPMADDYSDSLVSKRQVSVWCSNDYLGMSRHPRVCGAVIDT 994
KK DHTYRVFKTVNR A +P A+ + ++ V + VSVWCSNDYLGMSRHPRV A +T
Sbjct: 119 KKQDHTYRVFKTVNRWADAYPFAEHFFEASVPSKDVSVWCSNDYLGMSRHPRVLQATQET 178
Query: 995 LKHMVLELGVLETFLELSKFHVDLEQELADLHGKDAATL 1111
L+ G SKFHV++EQELA+LH KD+A L
Sbjct: 179 LQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSALL 217
Score = 53.9 bits (128), Expect(2) = 2e-41
Identities = 26/44 (59%), Positives = 31/44 (70%)
Frame = +3
Query: 1095 KMQPLLFSPGFGGNEPTLFTLGKMMPGWENYSDSGNHGPLIQGI 1226
K LLFS F N+ TLFTL K++PG E YSD+GNH +IQGI
Sbjct: 212 KDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGI 255
>ref|XP_003360386.1| PREDICTED: 5-aminolevulinate synthase, erythroid-specific,
mitochondrial-like isoform 2 [Sus scrofa].
Length = 550
Score = 134 bits (337), Expect(2) = 2e-41
Identities = 74/159 (46%), Positives = 95/159 (59%), Gaps = 10/159 (6%)
Frame = +2
Query: 665 GGEPSGLLKNFQDIMRKQRPEGVSHLLQDNLPK---SVSTFQ-------YDRFFEKKIDE 814
GG+ K+ M + +G S ++Q P+ V TF+ YD+FF KI E
Sbjct: 59 GGDSPSWAKSHCPFMLSELQDGKSKIVQKAAPEVQEDVKTFKTGNHFFGYDQFFRDKIME 118
Query: 815 KKNDHTYRVFKTVNRKAQCFPMADDYSDSLVSKRQVSVWCSNDYLGMSRHPRVCGAVIDT 994
KK DHTYRVFKTVNR A +P A+ + ++ V + VSVWCSNDYLGMSRHPRV A +T
Sbjct: 119 KKQDHTYRVFKTVNRWADAYPFAEHFFEASVPSKDVSVWCSNDYLGMSRHPRVLQATQET 178
Query: 995 LKHMVLELGVLETFLELSKFHVDLEQELADLHGKDAATL 1111
L+ G SKFHV++EQELA+LH KD+A L
Sbjct: 179 LQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSALL 217
Score = 53.9 bits (128), Expect(2) = 2e-41
Identities = 26/44 (59%), Positives = 31/44 (70%)
Frame = +3
Query: 1095 KMQPLLFSPGFGGNEPTLFTLGKMMPGWENYSDSGNHGPLIQGI 1226
K LLFS F N+ TLFTL K++PG E YSD+GNH +IQGI
Sbjct: 212 KDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGI 255
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 33,611,164
Number of extensions: 1034236
Number of successful extensions: 4343
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4315
Number of HSP's successfully gapped: 8
Length of query: 408
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 307
Effective length of database: 8,829,335
Effective search space: 2710605845
Effective search space used: 2710605845
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012734
(1226 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_065584.2| 5-aminolevulinate synthase, nonspecific, mitoch... 509 e-155
Alignment gi|NP_033783.1| 5-aminolevulinate synthase, erythroid-specific,... 160 4e-49
Alignment gi|NP_001095916.1| 5-aminolevulinate synthase, erythroid-specif... 146 4e-45
>ref|NP_065584.2| 5-aminolevulinate synthase, nonspecific, mitochondrial precursor [Mus
musculus].
Length = 642
Score = 509 bits (1310), Expect(2) = e-155
Identities = 254/310 (81%), Positives = 275/310 (88%), Gaps = 2/310 (0%)
Frame = +2
Query: 188 METVVRRCPFLSRVPQAFLQKAGKSLLFYAQNCPKMMEVGVKPAPRALSTSSVLCHQVKE 367
METVVRRCPFLSRVPQAFLQKAGKSLLFYAQNCPKMMEVG KPAPR LSTS+V C QVKE
Sbjct: 1 METVVRRCPFLSRVPQAFLQKAGKSLLFYAQNCPKMMEVGAKPAPRTLSTSAVHCQQVKE 60
Query: 368 TPPANEKDKTAKAEVQQAPDGSQ--RTPDGTQLPTGHPSPASSQSTASKCPFLAAQMSQG 541
TPPANEK+KTAKA VQQAPD SQ +TPDGTQLP+GHPSPA+SQ + SKCPFLAAQ+SQ
Sbjct: 61 TPPANEKEKTAKAAVQQAPDESQMAQTPDGTQLPSGHPSPATSQGSGSKCPFLAAQLSQT 120
Query: 542 GSSVFRKASLELQEDVQEMHAVREEVAQTSVNPSVINVKTDGGEPSGLLKNFQDIMRKQR 721
GSSVFRKASLELQEDVQEMHAVR+E AQ+ V PS++NVKTDG +PS LLKNFQDIMRKQR
Sbjct: 121 GSSVFRKASLELQEDVQEMHAVRKEAAQSPVPPSLVNVKTDGEDPSRLLKNFQDIMRKQR 180
Query: 722 PEGVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRKAQCFPMADDYSDS 901
PE VSHLLQDNLPKSVSTFQYD FFEKKIDEKKNDHTYRVFKTVNR+AQ FPMADDY+DS
Sbjct: 181 PERVSHLLQDNLPKSVSTFQYDHFFEKKIDEKKNDHTYRVFKTVNRRAQIFPMADDYTDS 240
Query: 902 LVSKRQVSVWCSNDYLGMSRHPRVCGAVIDTLKHMVLELGVLETFLELSKFHVDLEQELA 1081
L++K+QVSVWCSNDYLGMSRHPRVCGAV++T+K G SKFHV+LEQ LA
Sbjct: 241 LITKKQVSVWCSNDYLGMSRHPRVCGAVMETVKQHGAGAGGTRNISGTSKFHVELEQALA 300
Query: 1082 DLHGKDAATL 1111
DLHGKDAA L
Sbjct: 301 DLHGKDAALL 310
Score = 59.7 bits (143), Expect(2) = e-155
Identities = 30/45 (66%), Positives = 32/45 (71%)
Frame = +3
Query: 1092 GKMQPLLFSPGFGGNEPTLFTLGKMMPGWENYSDSGNHGPLIQGI 1226
GK LLFS F N+ TLFTL KMMPG E YSDSGNH +IQGI
Sbjct: 304 GKDAALLFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGI 348
>ref|NP_033783.1| 5-aminolevulinate synthase, erythroid-specific, mitochondrial isoform
a [Mus musculus].
Length = 587
Score = 160 bits (404), Expect(2) = 4e-49
Identities = 111/307 (36%), Positives = 154/307 (50%), Gaps = 2/307 (0%)
Frame = +2
Query: 197 VVRRCPFLSRVPQAFLQKAGKS--LLFYAQNCPKMMEVGVKPAPRALSTSSVLCHQVKET 370
++R CP LS+ P L K K+ LF CP L+T C Q+
Sbjct: 7 LLRSCPVLSQGPTGLLGKVAKTYQFLFSIGRCP------------ILATQGPTCSQIHL- 53
Query: 371 PPANEKDKTAKAEVQQAPDGSQRTPDGTQLPTGHPSPASSQSTASKCPFLAAQMSQGGSS 550
K KA G SP+ ++S CPF+ +++ S
Sbjct: 54 -------KATKA--------------------GGDSPSWAKS---HCPFMLSELQDRKSK 83
Query: 551 VFRKASLELQEDVQEMHAVREEVAQTSVNPSVINVKTDGGEPSGLLKNFQDIMRKQRPEG 730
+ ++A+ E+QEDV+ + ++ T D S +FQ+ +Q
Sbjct: 84 IVQRAAPEVQEDVKTF---KTDLLSTM----------DSTTRSHSFPSFQE--PEQTEGA 128
Query: 731 VSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRKAQCFPMADDYSDSLVS 910
V HL+Q+N+ S F YD+FF KI EKK DHTYRVFKTVNR A +P A +S++ ++
Sbjct: 129 VPHLIQNNMTGS-QAFGYDQFFRDKIMEKKQDHTYRVFKTVNRWANAYPFAQHFSEASMA 187
Query: 911 KRQVSVWCSNDYLGMSRHPRVCGAVIDTLKHMVLELGVLETFLELSKFHVDLEQELADLH 1090
+ VSVWCSNDYLG+SRHPRV A+ +TLK+ G SKFHV+LEQELA+LH
Sbjct: 188 SKDVSVWCSNDYLGISRHPRVLQAIEETLKNHGAGAGGTRNISGTSKFHVELEQELAELH 247
Query: 1091 GKDAATL 1111
KD+A L
Sbjct: 248 QKDSALL 254
Score = 54.3 bits (129), Expect(2) = 4e-49
Identities = 26/44 (59%), Positives = 31/44 (70%)
Frame = +3
Query: 1095 KMQPLLFSPGFGGNEPTLFTLGKMMPGWENYSDSGNHGPLIQGI 1226
K LLFS F N+ TLFTL K++PG E YSD+GNH +IQGI
Sbjct: 249 KDSALLFSSCFVANDSTLFTLAKLLPGCEIYSDAGNHASMIQGI 292
>ref|NP_001095916.1| 5-aminolevulinate synthase, erythroid-specific, mitochondrial isoform
b [Mus musculus].
Length = 572
Score = 146 bits (369), Expect(2) = 4e-45
Identities = 89/206 (43%), Positives = 121/206 (58%), Gaps = 4/206 (1%)
Frame = +2
Query: 506 KCPFLAAQMSQGGSSVFRKASLELQEDVQEMHAVREEVAQTSVNPSVINVKTD---GGEP 676
+CP LA Q S + KA+ + ++Q+ + + A V V KTD +
Sbjct: 37 RCPILATQ-GPTCSQIHLKAT-KAGGELQDRKSKIVQRAAPEVQEDVKTFKTDLLSTMDS 94
Query: 677 SGLLKNFQDIMRKQRPEG-VSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTV 853
+ +F ++ EG V HL+Q+N+ S F YD+FF KI EKK DHTYRVFKTV
Sbjct: 95 TTRSHSFPSFQEPEQTEGAVPHLIQNNMTGS-QAFGYDQFFRDKIMEKKQDHTYRVFKTV 153
Query: 854 NRKAQCFPMADDYSDSLVSKRQVSVWCSNDYLGMSRHPRVCGAVIDTLKHMVLELGVLET 1033
NR A +P A +S++ ++ + VSVWCSNDYLG+SRHPRV A+ +TLK+ G
Sbjct: 154 NRWANAYPFAQHFSEASMASKDVSVWCSNDYLGISRHPRVLQAIEETLKNHGAGAGGTRN 213
Query: 1034 FLELSKFHVDLEQELADLHGKDAATL 1111
SKFHV+LEQELA+LH KD+A L
Sbjct: 214 ISGTSKFHVELEQELAELHQKDSALL 239
Score = 54.3 bits (129), Expect(2) = 4e-45
Identities = 26/44 (59%), Positives = 31/44 (70%)
Frame = +3
Query: 1095 KMQPLLFSPGFGGNEPTLFTLGKMMPGWENYSDSGNHGPLIQGI 1226
K LLFS F N+ TLFTL K++PG E YSD+GNH +IQGI
Sbjct: 234 KDSALLFSSCFVANDSTLFTLAKLLPGCEIYSDAGNHASMIQGI 277
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 44,716,805
Number of extensions: 1306202
Number of successful extensions: 5365
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5321
Number of HSP's successfully gapped: 6
Length of query: 408
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 304
Effective length of database: 12,493,815
Effective search space: 3798119760
Effective search space used: 3798119760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012734
(1226 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_954635.1| 5-aminolevulinate synthase, nonspecific, mitoch... 516 e-157
Alignment gi|NP_000679.1| 5-aminolevulinate synthase, nonspecific, mitoch... 516 e-157
Alignment gi|NP_000023.2| 5-aminolevulinate synthase, erythroid-specific,... 164 4e-50
Alignment gi|NP_001033057.1| 5-aminolevulinate synthase, erythroid-specif... 136 6e-42
Alignment gi|NP_001033056.1| 5-aminolevulinate synthase, erythroid-specif... 136 6e-42
>ref|NP_954635.1| 5-aminolevulinate synthase, nonspecific, mitochondrial precursor
[Homo sapiens].
Length = 640
Score = 516 bits (1330), Expect(2) = e-157
Identities = 255/308 (82%), Positives = 279/308 (90%)
Frame = +2
Query: 188 METVVRRCPFLSRVPQAFLQKAGKSLLFYAQNCPKMMEVGVKPAPRALSTSSVLCHQVKE 367
ME+VVRRCPFLSRVPQAFLQKAGKSLLFYAQNCPKMMEVG KPAPRALST++V Q+KE
Sbjct: 1 MESVVRRCPFLSRVPQAFLQKAGKSLLFYAQNCPKMMEVGAKPAPRALSTAAVHYQQIKE 60
Query: 368 TPPANEKDKTAKAEVQQAPDGSQRTPDGTQLPTGHPSPASSQSTASKCPFLAAQMSQGGS 547
TPPA+EKDKTAKA+VQQ PDGSQ++PDGTQLP+GHP PA+SQ TASKCPFLAAQM+Q GS
Sbjct: 61 TPPASEKDKTAKAKVQQTPDGSQQSPDGTQLPSGHPLPATSQGTASKCPFLAAQMNQRGS 120
Query: 548 SVFRKASLELQEDVQEMHAVREEVAQTSVNPSVINVKTDGGEPSGLLKNFQDIMRKQRPE 727
SVF KASLELQEDVQEM+AVR+EVA+TS PSV++VKTDGG+PSGLLKNFQDIM+KQRPE
Sbjct: 121 SVFCKASLELQEDVQEMNAVRKEVAETSAGPSVVSVKTDGGDPSGLLKNFQDIMQKQRPE 180
Query: 728 GVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRKAQCFPMADDYSDSLV 907
VSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNR+A FPMADDYSDSL+
Sbjct: 181 RVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRRAHIFPMADDYSDSLI 240
Query: 908 SKRQVSVWCSNDYLGMSRHPRVCGAVIDTLKHMVLELGVLETFLELSKFHVDLEQELADL 1087
+K+QVSVWCSNDYLGMSRHPRVCGAV+DTLK G SKFHVDLE+ELADL
Sbjct: 241 TKKQVSVWCSNDYLGMSRHPRVCGAVMDTLKQHGAGAGGTRNISGTSKFHVDLERELADL 300
Query: 1088 HGKDAATL 1111
HGKDAA L
Sbjct: 301 HGKDAALL 308
Score = 59.7 bits (143), Expect(2) = e-157
Identities = 30/45 (66%), Positives = 32/45 (71%)
Frame = +3
Query: 1092 GKMQPLLFSPGFGGNEPTLFTLGKMMPGWENYSDSGNHGPLIQGI 1226
GK LLFS F N+ TLFTL KMMPG E YSDSGNH +IQGI
Sbjct: 302 GKDAALLFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGI 346
>ref|NP_000679.1| 5-aminolevulinate synthase, nonspecific, mitochondrial precursor
[Homo sapiens].
Length = 640
Score = 516 bits (1330), Expect(2) = e-157
Identities = 255/308 (82%), Positives = 279/308 (90%)
Frame = +2
Query: 188 METVVRRCPFLSRVPQAFLQKAGKSLLFYAQNCPKMMEVGVKPAPRALSTSSVLCHQVKE 367
ME+VVRRCPFLSRVPQAFLQKAGKSLLFYAQNCPKMMEVG KPAPRALST++V Q+KE
Sbjct: 1 MESVVRRCPFLSRVPQAFLQKAGKSLLFYAQNCPKMMEVGAKPAPRALSTAAVHYQQIKE 60
Query: 368 TPPANEKDKTAKAEVQQAPDGSQRTPDGTQLPTGHPSPASSQSTASKCPFLAAQMSQGGS 547
TPPA+EKDKTAKA+VQQ PDGSQ++PDGTQLP+GHP PA+SQ TASKCPFLAAQM+Q GS
Sbjct: 61 TPPASEKDKTAKAKVQQTPDGSQQSPDGTQLPSGHPLPATSQGTASKCPFLAAQMNQRGS 120
Query: 548 SVFRKASLELQEDVQEMHAVREEVAQTSVNPSVINVKTDGGEPSGLLKNFQDIMRKQRPE 727
SVF KASLELQEDVQEM+AVR+EVA+TS PSV++VKTDGG+PSGLLKNFQDIM+KQRPE
Sbjct: 121 SVFCKASLELQEDVQEMNAVRKEVAETSAGPSVVSVKTDGGDPSGLLKNFQDIMQKQRPE 180
Query: 728 GVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRKAQCFPMADDYSDSLV 907
VSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNR+A FPMADDYSDSL+
Sbjct: 181 RVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRRAHIFPMADDYSDSLI 240
Query: 908 SKRQVSVWCSNDYLGMSRHPRVCGAVIDTLKHMVLELGVLETFLELSKFHVDLEQELADL 1087
+K+QVSVWCSNDYLGMSRHPRVCGAV+DTLK G SKFHVDLE+ELADL
Sbjct: 241 TKKQVSVWCSNDYLGMSRHPRVCGAVMDTLKQHGAGAGGTRNISGTSKFHVDLERELADL 300
Query: 1088 HGKDAATL 1111
HGKDAA L
Sbjct: 301 HGKDAALL 308
Score = 59.7 bits (143), Expect(2) = e-157
Identities = 30/45 (66%), Positives = 32/45 (71%)
Frame = +3
Query: 1092 GKMQPLLFSPGFGGNEPTLFTLGKMMPGWENYSDSGNHGPLIQGI 1226
GK LLFS F N+ TLFTL KMMPG E YSDSGNH +IQGI
Sbjct: 302 GKDAALLFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGI 346
>ref|NP_000023.2| 5-aminolevulinate synthase, erythroid-specific, mitochondrial isoform
a precursor [Homo sapiens].
Length = 587
Score = 164 bits (414), Expect(2) = 4e-50
Identities = 98/233 (42%), Positives = 135/233 (57%), Gaps = 1/233 (0%)
Frame = +2
Query: 416 QAPDGSQRTPDGTQLPTGHPSPASSQSTASKCPFLAAQMSQGGSSVFRKASLELQEDVQE 595
Q P+ SQ T+ PS A CPF+ +++ G S + +KA+ E+QEDV+
Sbjct: 44 QGPNCSQIHLKATKAGGDSPSWAKGH-----CPFMLSELQDGKSKIVQKAAPEVQEDVKA 98
Query: 596 MHAVREEVAQTSVNPSVINVKTDGGEPSGLLKNFQDIMRKQRPEG-VSHLLQDNLPKSVS 772
+T + S+++V L K F +++ G V+HL+Q+N+P +
Sbjct: 99 F--------KTDLPSSLVSVS--------LRKPFSGPQEQEQISGKVTHLIQNNMPGNY- 141
Query: 773 TFQYDRFFEKKIDEKKNDHTYRVFKTVNRKAQCFPMADDYSDSLVSKRQVSVWCSNDYLG 952
F YD+FF KI EKK DHTYRVFKTVNR A +P A +S++ V+ + VSVWCSNDYLG
Sbjct: 142 VFSYDQFFRDKIMEKKQDHTYRVFKTVNRWADAYPFAQHFSEASVASKDVSVWCSNDYLG 201
Query: 953 MSRHPRVCGAVIDTLKHMVLELGVLETFLELSKFHVDLEQELADLHGKDAATL 1111
MSRHP+V A +TL+ G SKFHV+LEQELA+LH KD+A L
Sbjct: 202 MSRHPQVLQATQETLQRHGAGAGGTRNISGTSKFHVELEQELAELHQKDSALL 254
Score = 53.9 bits (128), Expect(2) = 4e-50
Identities = 26/44 (59%), Positives = 31/44 (70%)
Frame = +3
Query: 1095 KMQPLLFSPGFGGNEPTLFTLGKMMPGWENYSDSGNHGPLIQGI 1226
K LLFS F N+ TLFTL K++PG E YSD+GNH +IQGI
Sbjct: 249 KDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGI 292
>ref|NP_001033057.1| 5-aminolevulinate synthase, erythroid-specific, mitochondrial isoform
c precursor [Homo sapiens].
Length = 574
Score = 136 bits (343), Expect(2) = 6e-42
Identities = 80/177 (45%), Positives = 102/177 (57%), Gaps = 12/177 (6%)
Frame = +2
Query: 617 VAQTSVNPSVINVKTD--GGEPSGLLKNFQDIMRKQRPEGVSHLLQDNLP------KSVS 772
+A N S I++K GG+ K M + +G S ++Q P K+
Sbjct: 65 LATQGPNCSQIHLKATKAGGDSPSWAKGHCPFMLSELQDGKSKIVQKAAPEVQEDVKAFK 124
Query: 773 T----FQYDRFFEKKIDEKKNDHTYRVFKTVNRKAQCFPMADDYSDSLVSKRQVSVWCSN 940
T F YD+FF KI EKK DHTYRVFKTVNR A +P A +S++ V+ + VSVWCSN
Sbjct: 125 TGNYVFSYDQFFRDKIMEKKQDHTYRVFKTVNRWADAYPFAQHFSEASVASKDVSVWCSN 184
Query: 941 DYLGMSRHPRVCGAVIDTLKHMVLELGVLETFLELSKFHVDLEQELADLHGKDAATL 1111
DYLGMSRHP+V A +TL+ G SKFHV+LEQELA+LH KD+A L
Sbjct: 185 DYLGMSRHPQVLQATQETLQRHGAGAGGTRNISGTSKFHVELEQELAELHQKDSALL 241
Score = 53.9 bits (128), Expect(2) = 6e-42
Identities = 26/44 (59%), Positives = 31/44 (70%)
Frame = +3
Query: 1095 KMQPLLFSPGFGGNEPTLFTLGKMMPGWENYSDSGNHGPLIQGI 1226
K LLFS F N+ TLFTL K++PG E YSD+GNH +IQGI
Sbjct: 236 KDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGI 279
>ref|NP_001033056.1| 5-aminolevulinate synthase, erythroid-specific, mitochondrial isoform
b precursor [Homo sapiens].
Length = 550
Score = 136 bits (343), Expect(2) = 6e-42
Identities = 80/177 (45%), Positives = 102/177 (57%), Gaps = 12/177 (6%)
Frame = +2
Query: 617 VAQTSVNPSVINVKTD--GGEPSGLLKNFQDIMRKQRPEGVSHLLQDNLP------KSVS 772
+A N S I++K GG+ K M + +G S ++Q P K+
Sbjct: 41 LATQGPNCSQIHLKATKAGGDSPSWAKGHCPFMLSELQDGKSKIVQKAAPEVQEDVKAFK 100
Query: 773 T----FQYDRFFEKKIDEKKNDHTYRVFKTVNRKAQCFPMADDYSDSLVSKRQVSVWCSN 940
T F YD+FF KI EKK DHTYRVFKTVNR A +P A +S++ V+ + VSVWCSN
Sbjct: 101 TGNYVFSYDQFFRDKIMEKKQDHTYRVFKTVNRWADAYPFAQHFSEASVASKDVSVWCSN 160
Query: 941 DYLGMSRHPRVCGAVIDTLKHMVLELGVLETFLELSKFHVDLEQELADLHGKDAATL 1111
DYLGMSRHP+V A +TL+ G SKFHV+LEQELA+LH KD+A L
Sbjct: 161 DYLGMSRHPQVLQATQETLQRHGAGAGGTRNISGTSKFHVELEQELAELHQKDSALL 217
Score = 53.9 bits (128), Expect(2) = 6e-42
Identities = 26/44 (59%), Positives = 31/44 (70%)
Frame = +3
Query: 1095 KMQPLLFSPGFGGNEPTLFTLGKMMPGWENYSDSGNHGPLIQGI 1226
K LLFS F N+ TLFTL K++PG E YSD+GNH +IQGI
Sbjct: 212 KDSALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGI 255
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 52,870,625
Number of extensions: 1570215
Number of successful extensions: 6682
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6629
Number of HSP's successfully gapped: 10
Length of query: 408
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 303
Effective length of database: 14,835,944
Effective search space: 4495291032
Effective search space used: 4495291032
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012734
(1226 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 452 e-124
>Sscrofa_Chr13
|| Length = 218635234
Score = 452 bits (228), Expect = e-124
Identities = 228/228 (100%)
Strand = Plus / Minus
Query: 387 aggacaaaactgccaaagccgaggttcagcaggctcctgatggctcccagcggaccccag 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37666904 aggacaaaactgccaaagccgaggttcagcaggctcctgatggctcccagcggaccccag 37666845
Query: 447 atggcacgcagcttccaactggtcacccctcccctgcctcgagccagagcactgcaagca 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37666844 atggcacgcagcttccaactggtcacccctcccctgcctcgagccagagcactgcaagca 37666785
Query: 507 aatgtcctttcctggcggcccagatgagccagggtggcagcagcgtcttccgcaaagcca 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37666784 aatgtcctttcctggcggcccagatgagccagggtggcagcagcgtcttccgcaaagcca 37666725
Query: 567 gcctggaacttcaggaggacgtgcaggaaatgcatgctgtgagggaag 614
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37666724 gcctggaacttcaggaggacgtgcaggaaatgcatgctgtgagggaag 37666677
Score = 446 bits (225), Expect = e-122
Identities = 225/225 (100%)
Strand = Plus / Plus
Query: 162 caggatcagtgcatatcctctcggacatggagactgtggttcgccgctgcccattcttat 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37547824 caggatcagtgcatatcctctcggacatggagactgtggttcgccgctgcccattcttat 37547883
Query: 222 cccgagtgcctcaggcctttctgcagaaggcaggcaaatccctgttgttctatgcccaaa 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37547884 cccgagtgcctcaggcctttctgcagaaggcaggcaaatccctgttgttctatgcccaaa 37547943
Query: 282 actgccctaagatgatggaagttggggtcaagccagcccctcgggccctgtccacttcat 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37547944 actgccctaagatgatggaagttggggtcaagccagcccctcgggccctgtccacttcat 37548003
Query: 342 cagtactctgccaccaggtcaaggaaacccctccagccaatgaga 386
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37548004 cagtactctgccaccaggtcaaggaaacccctccagccaatgaga 37548048
Score = 394 bits (199), Expect = e-107
Identities = 215/223 (96%)
Strand = Plus / Minus
Query: 765 ctgtttccacttttcagtatgatcgtttctttgagaagaaaattgatgagnnnnnnnntg 824
|||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 37665075 ctgtttccacttttcagtatgatcgtttctttgagaagaaaattgatgagaaaaaaaatg 37665016
Query: 825 accatacatatcgggttttcaaaactgtgaaccggaaggcgcagtgcttccccatggcgg 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37665015 accatacatatcgggttttcaaaactgtgaaccggaaggcgcagtgcttccccatggcgg 37664956
Query: 885 atgactattcagactctctcgtcagcaaaaggcaggtgtccgtctggtgtagcaacgact 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37664955 atgactattcagactctctcgtcagcaaaaggcaggtgtccgtctggtgtagcaacgact 37664896
Query: 945 acctcgggatgagtcgccacccacgggtgtgtggggccgtcat 987
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37664895 acctcgggatgagtcgccacccacgggtgtgtggggccgtcat 37664853
Score = 301 bits (152), Expect = 5e-79
Identities = 152/152 (100%)
Strand = Plus / Minus
Query: 613 agaggttgctcaaacctcagtgaatcccagtgtgattaacgtgaagactgatggagggga 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37665864 agaggttgctcaaacctcagtgaatcccagtgtgattaacgtgaagactgatggagggga 37665805
Query: 673 gccgagtggactgctcaagaactttcaggatatcatgcgaaagcagagaccagaaggggt 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37665804 gccgagtggactgctcaagaactttcaggatatcatgcgaaagcagagaccagaaggggt 37665745
Query: 733 ctcccatcttcttcaagataacttgccaaaat 764
||||||||||||||||||||||||||||||||
Sbjct: 37665744 ctcccatcttcttcaagataacttgccaaaat 37665713
Score = 270 bits (136), Expect = 2e-69
Identities = 178/188 (94%), Gaps = 3/188 (1%)
Strand = Plus / Minus
Query: 988 agatactttgaaaca-tatggtactggagctgggggtactagaaacatttctggaactaa 1046
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37663943 agatactttgaaacaatatggtactggagctgggggtactagaaacatttctggaacta- 37663885
Query: 1047 gtaaattccacgtggacctggagcaggagctggctgacctccacgggaaagatgcagcca 1106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 37663884 gtaaattccacgtggacctggagcaggagctggctgacctccacgggaaagatgcag-ca 37663826
Query: 1107 ctcttattttccccgggctttgggggcaatgaaccaaccctcttcactctgggtaaaatg 1166
|||||||||||| || |||||| || |||||| |||||||||||||||||| |||||||
Sbjct: 37663825 ctcttattttcctcgtgctttgtggccaatgactcaaccctcttcactctggctaaaatg 37663766
Query: 1167 atgccagg 1174
||||||||
Sbjct: 37663765 atgccagg 37663758
Score = 232 bits (117), Expect = 4e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 2 gcccgtggcgcatgcgcagctggctatctctgtgtatattaggacggccggttcgcggcc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37546688 gcccgtggcgcatgcgcagctggctatctctgtgtatattaggacggccggttcgcggcc 37546747
Query: 62 tgaggatacccgcggacaagggcaacggtttggctcgattcttcagcttgagtacct 118
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37546748 tgaggatacccgcggacaagggcaacggtttggctcgattcttcagcttgagtacct 37546804
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,428,611
Number of extensions: 178
Number of successful extensions: 178
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 7
Length of query: 1226
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1205
Effective length of database: 2,808,413,156
Effective search space: 3384137852980
Effective search space used: 3384137852980
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)