Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012735
(1681 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533804.2| PREDICTED: similar to 5-aminolevulinate synthas... 932 0.0
Alignment gi|XP_859921.1| PREDICTED: similar to 5-aminolevulinate synthas... 902 0.0
Alignment gi|XP_859886.1| PREDICTED: similar to 5-aminolevulinate synthas... 883 0.0
Alignment gi|XP_859816.1| PREDICTED: similar to 5-aminolevulinate synthas... 883 0.0
Alignment gi|XP_859846.1| PREDICTED: similar to 5-aminolevulinate synthas... 879 0.0
Alignment gi|XP_859784.1| PREDICTED: similar to 5-aminolevulinate synthas... 858 0.0
Alignment gi|XP_548619.2| PREDICTED: similar to 5-aminolevulinate synthas... 593 e-169
Alignment gi|XP_538383.2| PREDICTED: similar to 2-amino-3-ketobutyrate co... 197 2e-50
Alignment gi|XP_542889.2| PREDICTED: similar to serine palmitoyltransfera... 142 1e-33
Alignment gi|XP_537524.2| PREDICTED: similar to serine palmitoyltransfera... 136 5e-32
>ref|XP_533804.2| PREDICTED: similar to 5-aminolevulinate synthase, nonspecific,
mitochondrial precursor (5-aminolevulinic acid synthase)
(Delta-aminolevulinate synthase) (Delta-ALA synthetase)
(ALAS-H) isoform 1 [Canis familiaris].
Length = 640
Score = 932 bits (2408), Expect = 0.0
Identities = 462/523 (88%), Positives = 487/523 (93%)
Frame = +2
Query: 5 KETPPANEKDKTAKAEVQQAPDGSQRTPDGTQLPTGHPSPASSQSTASKCPFLAAQMSQG 184
KETPPANEKDKTAKAEVQQ DGSQ+TPDGTQLP+GH S A+SQ TASKCPFLAAQMSQ
Sbjct: 59 KETPPANEKDKTAKAEVQQTADGSQQTPDGTQLPSGHSSLATSQGTASKCPFLAAQMSQK 118
Query: 185 GSSVFRKASLELQEDVQEMHAVREEVAQTSVNPSVINVKTDGGEPSGLLKNFQDIMRKQR 364
GSSVFRKASLELQEDVQEMHAVR+EVAQTSVNPSVI+VK DGG+PSGLL+NFQDIMRKQR
Sbjct: 119 GSSVFRKASLELQEDVQEMHAVRKEVAQTSVNPSVISVKADGGDPSGLLRNFQDIMRKQR 178
Query: 365 PEGVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRKAQCFPMADDYSDS 544
PE VSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNR+A FPMADDYSDS
Sbjct: 179 PERVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRRAHIFPMADDYSDS 238
Query: 545 LVSKRQVSVWCSNDYLGMSRHPRVCGAVIDTLKQYGTGAGGTRNISGTSKFHVDLEQELA 724
L++K+QVSVWCSNDYLGMSRHPRVCGAV+DTLKQ+G GAGGTRNISGTSKFHVDLEQELA
Sbjct: 239 LITKKQVSVWCSNDYLGMSRHPRVCGAVMDTLKQHGAGAGGTRNISGTSKFHVDLEQELA 298
Query: 725 DLHGKDAALLFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNSGVPKYIFRH 904
DLHGKDAALLFSSCFVANDSTLFTLA+MMPGCEIYSDSGNHASMIQGIRNS VPKYIFRH
Sbjct: 299 DLHGKDAALLFSSCFVANDSTLFTLARMMPGCEIYSDSGNHASMIQGIRNSRVPKYIFRH 358
Query: 905 NDVHHLRELLQRSDPAVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGL 1084
NDV HLRELLQRSDP+VPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGL
Sbjct: 359 NDVSHLRELLQRSDPSVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGL 418
Query: 1085 YXXXXXXXXXXXXVMPKMDIISGTLGKAFGCVGGYIASTNSLVDTIRSYAAGFIFTTSLP 1264
Y VMPKMDIISGTLGKAFGCVGGYIAST+SL+DT+RSYAAGFIFTTSLP
Sbjct: 419 YGARGGGIGDRDGVMPKMDIISGTLGKAFGCVGGYIASTSSLIDTVRSYAAGFIFTTSLP 478
Query: 1265 PMVLAGALESVRILKSAEGRALRRQHQRNVKLMRQMLMDAGLPVIHCPSHIIPVRVSDAA 1444
PM+LAGALESVRILKSAEGRALRRQHQRNVKLMRQMLMDAGLPV+HCPSHIIPVRV++AA
Sbjct: 479 PMLLAGALESVRILKSAEGRALRRQHQRNVKLMRQMLMDAGLPVVHCPSHIIPVRVANAA 538
Query: 1445 KNTEICDELMSRYNIYVQAINYPTVPRGGRAAADCPHAPSTPR 1573
KNTE+CDELMSR+NIYVQAINYPTVPRG P TP+
Sbjct: 539 KNTEVCDELMSRHNIYVQAINYPTVPRGEELLRIAPTPHHTPQ 581
Score = 52.4 bits (124), Expect = 1e-06
Identities = 26/51 (50%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = +1
Query: 1522 PGGKSCCGLPPRPLHPPEMMTNFVDNLLAAWKQVGLELSTFLS-*VNFCRR 1671
P G+ + P P H P+MM F++NLLA WK+VGLEL S NFCRR
Sbjct: 564 PRGEELLRIAPTPHHTPQMMNYFLENLLATWKRVGLELKPHSSAECNFCRR 614
>ref|XP_859921.1| PREDICTED: similar to 5-aminolevulinate synthase, nonspecific,
mitochondrial precursor (5-aminolevulinic acid synthase)
(Delta-aminolevulinate synthase) (Delta-ALA synthetase)
(ALAS-H) isoform 6 [Canis familiaris].
Length = 623
Score = 902 bits (2330), Expect = 0.0
Identities = 449/524 (85%), Positives = 476/524 (90%)
Frame = +2
Query: 2 SKETPPANEKDKTAKAEVQQAPDGSQRTPDGTQLPTGHPSPASSQSTASKCPFLAAQMSQ 181
+K P A +VQQ DGSQ+TPDGTQLP+GH S A+SQ TASKCPFLAAQMSQ
Sbjct: 41 AKPAPRALSTSAVHCQQVQQTADGSQQTPDGTQLPSGHSSLATSQGTASKCPFLAAQMSQ 100
Query: 182 GGSSVFRKASLELQEDVQEMHAVREEVAQTSVNPSVINVKTDGGEPSGLLKNFQDIMRKQ 361
GSSVFRKASLELQEDVQEMHAVR+EVAQTSVNPSVI+VK DGG+PSGLL+NFQDIMRKQ
Sbjct: 101 KGSSVFRKASLELQEDVQEMHAVRKEVAQTSVNPSVISVKADGGDPSGLLRNFQDIMRKQ 160
Query: 362 RPEGVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRKAQCFPMADDYSD 541
RPE VSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNR+A FPMADDYSD
Sbjct: 161 RPERVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRRAHIFPMADDYSD 220
Query: 542 SLVSKRQVSVWCSNDYLGMSRHPRVCGAVIDTLKQYGTGAGGTRNISGTSKFHVDLEQEL 721
SL++K+QVSVWCSNDYLGMSRHPRVCGAV+DTLKQ+G GAGGTRNISGTSKFHVDLEQEL
Sbjct: 221 SLITKKQVSVWCSNDYLGMSRHPRVCGAVMDTLKQHGAGAGGTRNISGTSKFHVDLEQEL 280
Query: 722 ADLHGKDAALLFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNSGVPKYIFR 901
ADLHGKDAALLFSSCFVANDSTLFTLA+MMPGCEIYSDSGNHASMIQGIRNS VPKYIFR
Sbjct: 281 ADLHGKDAALLFSSCFVANDSTLFTLARMMPGCEIYSDSGNHASMIQGIRNSRVPKYIFR 340
Query: 902 HNDVHHLRELLQRSDPAVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVG 1081
HNDV HLRELLQRSDP+VPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVG
Sbjct: 341 HNDVSHLRELLQRSDPSVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVG 400
Query: 1082 LYXXXXXXXXXXXXVMPKMDIISGTLGKAFGCVGGYIASTNSLVDTIRSYAAGFIFTTSL 1261
LY VMPKMDIISGTLGKAFGCVGGYIAST+SL+DT+RSYAAGFIFTTSL
Sbjct: 401 LYGARGGGIGDRDGVMPKMDIISGTLGKAFGCVGGYIASTSSLIDTVRSYAAGFIFTTSL 460
Query: 1262 PPMVLAGALESVRILKSAEGRALRRQHQRNVKLMRQMLMDAGLPVIHCPSHIIPVRVSDA 1441
PPM+LAGALESVRILKSAEGRALRRQHQRNVKLMRQMLMDAGLPV+HCPSHIIPVRV++A
Sbjct: 461 PPMLLAGALESVRILKSAEGRALRRQHQRNVKLMRQMLMDAGLPVVHCPSHIIPVRVANA 520
Query: 1442 AKNTEICDELMSRYNIYVQAINYPTVPRGGRAAADCPHAPSTPR 1573
AKNTE+CDELMSR+NIYVQAINYPTVPRG P TP+
Sbjct: 521 AKNTEVCDELMSRHNIYVQAINYPTVPRGEELLRIAPTPHHTPQ 564
Score = 52.4 bits (124), Expect = 1e-06
Identities = 26/51 (50%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = +1
Query: 1522 PGGKSCCGLPPRPLHPPEMMTNFVDNLLAAWKQVGLELSTFLS-*VNFCRR 1671
P G+ + P P H P+MM F++NLLA WK+VGLEL S NFCRR
Sbjct: 547 PRGEELLRIAPTPHHTPQMMNYFLENLLATWKRVGLELKPHSSAECNFCRR 597
>ref|XP_859886.1| PREDICTED: similar to 5-aminolevulinate synthase, nonspecific,
mitochondrial precursor (5-aminolevulinic acid synthase)
(Delta-aminolevulinate synthase) (Delta-ALA synthetase)
(ALAS-H) isoform 5 [Canis familiaris].
Length = 625
Score = 883 bits (2282), Expect = 0.0
Identities = 445/523 (85%), Positives = 472/523 (90%)
Frame = +2
Query: 5 KETPPANEKDKTAKAEVQQAPDGSQRTPDGTQLPTGHPSPASSQSTASKCPFLAAQMSQG 184
KETPPANEK +T +AE +LP+GH S A+SQ TASKCPFLAAQMSQ
Sbjct: 59 KETPPANEKAET-QAE--------------GELPSGHSSLATSQGTASKCPFLAAQMSQK 103
Query: 185 GSSVFRKASLELQEDVQEMHAVREEVAQTSVNPSVINVKTDGGEPSGLLKNFQDIMRKQR 364
GSSVFRKASLELQEDVQEMHAVR+EVAQTSVNPSVI+VK DGG+PSGLL+NFQDIMRKQR
Sbjct: 104 GSSVFRKASLELQEDVQEMHAVRKEVAQTSVNPSVISVKADGGDPSGLLRNFQDIMRKQR 163
Query: 365 PEGVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRKAQCFPMADDYSDS 544
PE VSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNR+A FPMADDYSDS
Sbjct: 164 PERVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRRAHIFPMADDYSDS 223
Query: 545 LVSKRQVSVWCSNDYLGMSRHPRVCGAVIDTLKQYGTGAGGTRNISGTSKFHVDLEQELA 724
L++K+QVSVWCSNDYLGMSRHPRVCGAV+DTLKQ+G GAGGTRNISGTSKFHVDLEQELA
Sbjct: 224 LITKKQVSVWCSNDYLGMSRHPRVCGAVMDTLKQHGAGAGGTRNISGTSKFHVDLEQELA 283
Query: 725 DLHGKDAALLFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNSGVPKYIFRH 904
DLHGKDAALLFSSCFVANDSTLFTLA+MMPGCEIYSDSGNHASMIQGIRNS VPKYIFRH
Sbjct: 284 DLHGKDAALLFSSCFVANDSTLFTLARMMPGCEIYSDSGNHASMIQGIRNSRVPKYIFRH 343
Query: 905 NDVHHLRELLQRSDPAVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGL 1084
NDV HLRELLQRSDP+VPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGL
Sbjct: 344 NDVSHLRELLQRSDPSVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGL 403
Query: 1085 YXXXXXXXXXXXXVMPKMDIISGTLGKAFGCVGGYIASTNSLVDTIRSYAAGFIFTTSLP 1264
Y VMPKMDIISGTLGKAFGCVGGYIAST+SL+DT+RSYAAGFIFTTSLP
Sbjct: 404 YGARGGGIGDRDGVMPKMDIISGTLGKAFGCVGGYIASTSSLIDTVRSYAAGFIFTTSLP 463
Query: 1265 PMVLAGALESVRILKSAEGRALRRQHQRNVKLMRQMLMDAGLPVIHCPSHIIPVRVSDAA 1444
PM+LAGALESVRILKSAEGRALRRQHQRNVKLMRQMLMDAGLPV+HCPSHIIPVRV++AA
Sbjct: 464 PMLLAGALESVRILKSAEGRALRRQHQRNVKLMRQMLMDAGLPVVHCPSHIIPVRVANAA 523
Query: 1445 KNTEICDELMSRYNIYVQAINYPTVPRGGRAAADCPHAPSTPR 1573
KNTE+CDELMSR+NIYVQAINYPTVPRG P TP+
Sbjct: 524 KNTEVCDELMSRHNIYVQAINYPTVPRGEELLRIAPTPHHTPQ 566
Score = 52.4 bits (124), Expect = 1e-06
Identities = 26/51 (50%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = +1
Query: 1522 PGGKSCCGLPPRPLHPPEMMTNFVDNLLAAWKQVGLELSTFLS-*VNFCRR 1671
P G+ + P P H P+MM F++NLLA WK+VGLEL S NFCRR
Sbjct: 549 PRGEELLRIAPTPHHTPQMMNYFLENLLATWKRVGLELKPHSSAECNFCRR 599
>ref|XP_859816.1| PREDICTED: similar to 5-aminolevulinate synthase, nonspecific,
mitochondrial precursor (5-aminolevulinic acid synthase)
(Delta-aminolevulinate synthase) (Delta-ALA synthetase)
(ALAS-H) isoform 3 [Canis familiaris].
Length = 628
Score = 883 bits (2281), Expect = 0.0
Identities = 440/509 (86%), Positives = 466/509 (91%)
Frame = +2
Query: 47 AEVQQAPDGSQRTPDGTQLPTGHPSPASSQSTASKCPFLAAQMSQGGSSVFRKASLELQE 226
+EVQQ DGSQ+TPDGTQLP+GH S A+SQ TASKCPFLAAQMSQ GSSVFRKASLELQE
Sbjct: 62 SEVQQTADGSQQTPDGTQLPSGHSSLATSQGTASKCPFLAAQMSQKGSSVFRKASLELQE 121
Query: 227 DVQEMHAVREEVAQTSVNPSVINVKTDGGEPSGLLKNFQDIMRKQRPEGVSHLLQDNLPK 406
DVQEMHAVR+ T PSVI+VK DGG+PSGLL+NFQDIMRKQRPE VSHLLQDNLPK
Sbjct: 122 DVQEMHAVRKGKHMTGT-PSVISVKADGGDPSGLLRNFQDIMRKQRPERVSHLLQDNLPK 180
Query: 407 SVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRKAQCFPMADDYSDSLVSKRQVSVWCSND 586
SVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNR+A FPMADDYSDSL++K+QVSVWCSND
Sbjct: 181 SVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRRAHIFPMADDYSDSLITKKQVSVWCSND 240
Query: 587 YLGMSRHPRVCGAVIDTLKQYGTGAGGTRNISGTSKFHVDLEQELADLHGKDAALLFSSC 766
YLGMSRHPRVCGAV+DTLKQ+G GAGGTRNISGTSKFHVDLEQELADLHGKDAALLFSSC
Sbjct: 241 YLGMSRHPRVCGAVMDTLKQHGAGAGGTRNISGTSKFHVDLEQELADLHGKDAALLFSSC 300
Query: 767 FVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNSGVPKYIFRHNDVHHLRELLQRSD 946
FVANDSTLFTLA+MMPGCEIYSDSGNHASMIQGIRNS VPKYIFRHNDV HLRELLQRSD
Sbjct: 301 FVANDSTLFTLARMMPGCEIYSDSGNHASMIQGIRNSRVPKYIFRHNDVSHLRELLQRSD 360
Query: 947 PAVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGLYXXXXXXXXXXXXV 1126
P+VPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGLY V
Sbjct: 361 PSVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGLYGARGGGIGDRDGV 420
Query: 1127 MPKMDIISGTLGKAFGCVGGYIASTNSLVDTIRSYAAGFIFTTSLPPMVLAGALESVRIL 1306
MPKMDIISGTLGKAFGCVGGYIAST+SL+DT+RSYAAGFIFTTSLPPM+LAGALESVRIL
Sbjct: 421 MPKMDIISGTLGKAFGCVGGYIASTSSLIDTVRSYAAGFIFTTSLPPMLLAGALESVRIL 480
Query: 1307 KSAEGRALRRQHQRNVKLMRQMLMDAGLPVIHCPSHIIPVRVSDAAKNTEICDELMSRYN 1486
KSAEGRALRRQHQRNVKLMRQMLMDAGLPV+HCPSHIIPVRV++AAKNTE+CDELMSR+N
Sbjct: 481 KSAEGRALRRQHQRNVKLMRQMLMDAGLPVVHCPSHIIPVRVANAAKNTEVCDELMSRHN 540
Query: 1487 IYVQAINYPTVPRGGRAAADCPHAPSTPR 1573
IYVQAINYPTVPRG P TP+
Sbjct: 541 IYVQAINYPTVPRGEELLRIAPTPHHTPQ 569
Score = 52.4 bits (124), Expect = 1e-06
Identities = 26/51 (50%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = +1
Query: 1522 PGGKSCCGLPPRPLHPPEMMTNFVDNLLAAWKQVGLELSTFLS-*VNFCRR 1671
P G+ + P P H P+MM F++NLLA WK+VGLEL S NFCRR
Sbjct: 552 PRGEELLRIAPTPHHTPQMMNYFLENLLATWKRVGLELKPHSSAECNFCRR 602
>ref|XP_859846.1| PREDICTED: similar to 5-aminolevulinate synthase, nonspecific,
mitochondrial precursor (5-aminolevulinic acid synthase)
(Delta-aminolevulinate synthase) (Delta-ALA synthetase)
(ALAS-H) isoform 4 [Canis familiaris].
Length = 642
Score = 879 bits (2272), Expect = 0.0
Identities = 448/537 (83%), Positives = 471/537 (87%), Gaps = 14/537 (2%)
Frame = +2
Query: 5 KETPPANEKDKTAKAEVQQAPDGSQRTP--DGTQLPTGHPSPASSQSTASKCPFLAAQMS 178
KETPPANE TP DGTQLP+GH S A+SQ TASKCPFLAAQMS
Sbjct: 59 KETPPANESKFVIL------------TPQVDGTQLPSGHSSLATSQGTASKCPFLAAQMS 106
Query: 179 QGGSSVFRKASLELQEDVQEMHAVR------------EEVAQTSVNPSVINVKTDGGEPS 322
Q GSSVFRKASLELQEDVQEMHAVR EEVAQTSVNPSVI+VK DGG+PS
Sbjct: 107 QKGSSVFRKASLELQEDVQEMHAVRKGKHMTGTIRKNEEVAQTSVNPSVISVKADGGDPS 166
Query: 323 GLLKNFQDIMRKQRPEGVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNR 502
GLL+NFQDIMRKQRPE VSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNR
Sbjct: 167 GLLRNFQDIMRKQRPERVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNR 226
Query: 503 KAQCFPMADDYSDSLVSKRQVSVWCSNDYLGMSRHPRVCGAVIDTLKQYGTGAGGTRNIS 682
+A FPMADDYSDSL++K+QVSVWCSNDYLGMSRHPRVCGAV+DTLKQ+G GAGGTRNIS
Sbjct: 227 RAHIFPMADDYSDSLITKKQVSVWCSNDYLGMSRHPRVCGAVMDTLKQHGAGAGGTRNIS 286
Query: 683 GTSKFHVDLEQELADLHGKDAALLFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQ 862
GTSKFHVDLEQELADLHGKDAALLFSSCFVANDSTLFTLA+MMPGCEIYSDSGNHASMIQ
Sbjct: 287 GTSKFHVDLEQELADLHGKDAALLFSSCFVANDSTLFTLARMMPGCEIYSDSGNHASMIQ 346
Query: 863 GIRNSGVPKYIFRHNDVHHLRELLQRSDPAVPKIVAFETVHSMDGAVCPLEELCDVAHEF 1042
GIRNS VPKYIFRHNDV HLRELLQRSDP+VPKIVAFETVHSMDGAVCPLEELCDVAHEF
Sbjct: 347 GIRNSRVPKYIFRHNDVSHLRELLQRSDPSVPKIVAFETVHSMDGAVCPLEELCDVAHEF 406
Query: 1043 GAITFVDEVHAVGLYXXXXXXXXXXXXVMPKMDIISGTLGKAFGCVGGYIASTNSLVDTI 1222
GAITFVDEVHAVGLY VMPKMDIISGTLGKAFGCVGGYIAST+SL+DT+
Sbjct: 407 GAITFVDEVHAVGLYGARGGGIGDRDGVMPKMDIISGTLGKAFGCVGGYIASTSSLIDTV 466
Query: 1223 RSYAAGFIFTTSLPPMVLAGALESVRILKSAEGRALRRQHQRNVKLMRQMLMDAGLPVIH 1402
RSYAAGFIFTTSLPPM+LAGALESVRILKSAEGRALRRQHQRNVKLMRQMLMDAGLPV+H
Sbjct: 467 RSYAAGFIFTTSLPPMLLAGALESVRILKSAEGRALRRQHQRNVKLMRQMLMDAGLPVVH 526
Query: 1403 CPSHIIPVRVSDAAKNTEICDELMSRYNIYVQAINYPTVPRGGRAAADCPHAPSTPR 1573
CPSHIIPVRV++AAKNTE+CDELMSR+NIYVQAINYPTVPRG P TP+
Sbjct: 527 CPSHIIPVRVANAAKNTEVCDELMSRHNIYVQAINYPTVPRGEELLRIAPTPHHTPQ 583
Score = 52.4 bits (124), Expect = 1e-06
Identities = 26/51 (50%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = +1
Query: 1522 PGGKSCCGLPPRPLHPPEMMTNFVDNLLAAWKQVGLELSTFLS-*VNFCRR 1671
P G+ + P P H P+MM F++NLLA WK+VGLEL S NFCRR
Sbjct: 566 PRGEELLRIAPTPHHTPQMMNYFLENLLATWKRVGLELKPHSSAECNFCRR 616
>ref|XP_859784.1| PREDICTED: similar to 5-aminolevulinate synthase, nonspecific,
mitochondrial precursor (5-aminolevulinic acid synthase)
(Delta-aminolevulinate synthase) (Delta-ALA synthetase)
(ALAS-H) isoform 2 [Canis familiaris].
Length = 629
Score = 858 bits (2217), Expect = 0.0
Identities = 436/523 (83%), Positives = 460/523 (87%)
Frame = +2
Query: 5 KETPPANEKDKTAKAEVQQAPDGSQRTPDGTQLPTGHPSPASSQSTASKCPFLAAQMSQG 184
KETPPANE E GS DGTQLP+GH S A+SQ TASKCPFLAAQMSQ
Sbjct: 59 KETPPANENFNKNSIE------GSL---DGTQLPSGHSSLATSQGTASKCPFLAAQMSQK 109
Query: 185 GSSVFRKASLELQEDVQEMHAVREEVAQTSVNPSVINVKTDGGEPSGLLKNFQDIMRKQR 364
GSSVFRKASLELQEDVQEMHAVR+ T N + DGG+PSGLL+NFQDIMRKQR
Sbjct: 110 GSSVFRKASLELQEDVQEMHAVRKGKHMTGTIRK--NEEADGGDPSGLLRNFQDIMRKQR 167
Query: 365 PEGVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRKAQCFPMADDYSDS 544
PE VSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNR+A FPMADDYSDS
Sbjct: 168 PERVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRRAHIFPMADDYSDS 227
Query: 545 LVSKRQVSVWCSNDYLGMSRHPRVCGAVIDTLKQYGTGAGGTRNISGTSKFHVDLEQELA 724
L++K+QVSVWCSNDYLGMSRHPRVCGAV+DTLKQ+G GAGGTRNISGTSKFHVDLEQELA
Sbjct: 228 LITKKQVSVWCSNDYLGMSRHPRVCGAVMDTLKQHGAGAGGTRNISGTSKFHVDLEQELA 287
Query: 725 DLHGKDAALLFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNSGVPKYIFRH 904
DLHGKDAALLFSSCFVANDSTLFTLA+MMPGCEIYSDSGNHASMIQGIRNS VPKYIFRH
Sbjct: 288 DLHGKDAALLFSSCFVANDSTLFTLARMMPGCEIYSDSGNHASMIQGIRNSRVPKYIFRH 347
Query: 905 NDVHHLRELLQRSDPAVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGL 1084
NDV HLRELLQRSDP+VPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGL
Sbjct: 348 NDVSHLRELLQRSDPSVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGL 407
Query: 1085 YXXXXXXXXXXXXVMPKMDIISGTLGKAFGCVGGYIASTNSLVDTIRSYAAGFIFTTSLP 1264
Y VMPKMDIISGTLGKAFGCVGGYIAST+SL+DT+RSYAAGFIFTTSLP
Sbjct: 408 YGARGGGIGDRDGVMPKMDIISGTLGKAFGCVGGYIASTSSLIDTVRSYAAGFIFTTSLP 467
Query: 1265 PMVLAGALESVRILKSAEGRALRRQHQRNVKLMRQMLMDAGLPVIHCPSHIIPVRVSDAA 1444
PM+LAGALESVRILKSAEGRALRRQHQRNVKLMRQMLMDAGLPV+HCPSHIIPVRV++AA
Sbjct: 468 PMLLAGALESVRILKSAEGRALRRQHQRNVKLMRQMLMDAGLPVVHCPSHIIPVRVANAA 527
Query: 1445 KNTEICDELMSRYNIYVQAINYPTVPRGGRAAADCPHAPSTPR 1573
KNTE+CDELMSR+NIYVQAINYPTVPRG P TP+
Sbjct: 528 KNTEVCDELMSRHNIYVQAINYPTVPRGEELLRIAPTPHHTPQ 570
Score = 52.4 bits (124), Expect = 1e-06
Identities = 26/51 (50%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = +1
Query: 1522 PGGKSCCGLPPRPLHPPEMMTNFVDNLLAAWKQVGLELSTFLS-*VNFCRR 1671
P G+ + P P H P+MM F++NLLA WK+VGLEL S NFCRR
Sbjct: 553 PRGEELLRIAPTPHHTPQMMNYFLENLLATWKRVGLELKPHSSAECNFCRR 603
>ref|XP_548619.2| PREDICTED: similar to 5-aminolevulinate synthase, erythroid-specific,
mitochondrial precursor (5-aminolevulinic acid synthase)
(Delta-aminolevulinate synthase) (Delta-ALA synthetase)
(ALAS-E) [Canis familiaris].
Length = 587
Score = 593 bits (1530), Expect = e-169
Identities = 302/475 (63%), Positives = 363/475 (76%), Gaps = 3/475 (0%)
Frame = +2
Query: 146 SKCPFLAAQMSQGGSSVFRKASLELQEDVQEMHAVREEVAQTSVNPSVINVKTDGGEPSG 325
S CPF+ +++ G S + +KA+ E+QEDV+ +P+ +++ P
Sbjct: 68 SPCPFMLSELQDGKSKIVQKAAPEVQEDVKTFKT------DLPRSPASTSLRKPFSNPQE 121
Query: 326 LLKNFQDIMRKQRPEGVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRK 505
L + E V+HL+Q+N+ + F YD+FF KI EKK DHTYRVFKTVNR
Sbjct: 122 L---------ELISEKVTHLVQNNMIGN-HVFGYDQFFRHKIMEKKQDHTYRVFKTVNRW 171
Query: 506 AQCFPMADDYSDSLVSKRQVSVWCSNDYLGMSRHPRVCGAVIDTLKQYGTGAGGTRNISG 685
A +P A +S++ ++ + VSVWCSNDYLGMSRHPRV A +TL+++G GAGGTRNISG
Sbjct: 172 ADAYPFAQHFSEASMASKDVSVWCSNDYLGMSRHPRVLQATQETLQRHGAGAGGTRNISG 231
Query: 686 TSKFHVDLEQELADLHGKDAALLFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQG 865
TSKFHV+LEQELA+LH KDAALLFSSCFVANDSTLFTLAK++PGCEIYSD+GNHASMIQG
Sbjct: 232 TSKFHVELEQELAELHQKDAALLFSSCFVANDSTLFTLAKILPGCEIYSDAGNHASMIQG 291
Query: 866 IRNSGVPKYIFRHNDVHHLRELLQRSDPAVPKIVAFETVHSMDGAVCPLEELCDVAHEFG 1045
IRNSG K++FRHND HL++LL+ S+ PKIVAFETVHSMDGA+CPLEELCDVAH++G
Sbjct: 292 IRNSGAAKFVFRHNDPDHLKKLLKESNTRTPKIVAFETVHSMDGAICPLEELCDVAHQYG 351
Query: 1046 AITFVDEVHAVGLYXXXXXXXXXXXXVMPKMDIISGTLGKAFGCVGGYIASTNSLVDTIR 1225
A+TFVDEVHAVGLY VM K+DI+SGTLGKAFGCVGGYIAST LVD +R
Sbjct: 352 ALTFVDEVHAVGLYGPQGAGIGERDGVMHKIDIVSGTLGKAFGCVGGYIASTRDLVDMVR 411
Query: 1226 SYAAGFIFTTSLPPMVLAGALESVRILKSAEGRALRRQHQRNVKLMRQMLMDAGLPVIHC 1405
SYAAGFIFTTSLPPMVL+GALESVR+LK EG+ALRR HQRNVK MRQ+LMD GLPVI C
Sbjct: 412 SYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPC 471
Query: 1406 PSHIIPVRVSDAAKNTEICDELMSRYNIYVQAINYPTVPRGG---RAAADCPHAP 1561
PSHIIP+RV DAA N++ICD L+S++ IYVQAINYPTVPRG R A H+P
Sbjct: 472 PSHIIPIRVGDAALNSKICDLLLSKHGIYVQAINYPTVPRGEELLRLAPSPHHSP 526
>ref|XP_538383.2| PREDICTED: similar to 2-amino-3-ketobutyrate coenzyme A ligase,
mitochondrial precursor (AKB ligase) (Glycine
acetyltransferase) [Canis familiaris].
Length = 419
Score = 197 bits (502), Expect = 2e-50
Identities = 118/319 (36%), Positives = 173/319 (54%), Gaps = 1/319 (0%)
Frame = +2
Query: 572 WCSNDYLGMSRHPRVCGAVIDTLKQYGTGAGGTRNISGTSKFHVDLEQELADLHGKDAAL 751
+C+N+YLG+S HP V A + L+++G G TR I GT H DLE ++A H ++ A+
Sbjct: 70 FCANNYLGLSSHPEVIQAGLQALEEFGAGLSSTRFICGTQSIHKDLEAKIARFHQREDAI 129
Query: 752 LFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNSGVPKYIFRHNDVHHLREL 931
L+ SCF AN + LF A + P + SD NHAS+I GIR KY +RH D+ L
Sbjct: 130 LYPSCFDAN-AGLFE-ALLSPQDAVLSDELNHASIIDGIRLCKAHKYRYRHLDMADLEAK 187
Query: 932 LQRSDPAVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGLYXXXXXXXX 1111
LQ + ++VA + SMDG + PL+E+C +A +GA+ FVDE HA G
Sbjct: 188 LQEAQNHRLRLVATDGAFSMDGDIAPLQEICHLASRYGALVFVDECHATGFLGATGRGTD 247
Query: 1112 XXXXVMPKMDIISGTLGKAF-GCVGGYIASTNSLVDTIRSYAAGFIFTTSLPPMVLAGAL 1288
VM ++ II+ TLGKA G GGY LV +R A ++F+ SLPP V+ A
Sbjct: 248 ELLGVMDQVTIINSTLGKALGGASGGYTTGPGPLVSLLRQRARPYLFSNSLPPAVVGCAS 307
Query: 1289 ESVRILKSAEGRALRRQHQRNVKLMRQMLMDAGLPVIHCPSHIIPVRVSDAAKNTEICDE 1468
+++ +L E A+ + K R + AG V+ I PV + DA + + D+
Sbjct: 308 KALDLL--MESNAIVQSMAAKTKRFRSKMEAAGFTVLGASHPICPVMLGDARLASCMADD 365
Query: 1469 LMSRYNIYVQAINYPTVPR 1525
++ R I+V +YP VP+
Sbjct: 366 MLKR-GIFVIGFSYPVVPK 383
>ref|XP_542889.2| PREDICTED: similar to serine palmitoyltransferase, long chain base
subunit 2 [Canis familiaris].
Length = 552
Score = 142 bits (357), Expect = 1e-33
Identities = 100/346 (28%), Positives = 169/346 (48%), Gaps = 16/346 (4%)
Frame = +2
Query: 578 SNDYLGMSR-HPRVCGAVIDTLKQYGTGAGGTRNISGTSKFHVDLEQELADLHGKDAALL 754
S ++LG++ + V D L++YG G TR+ GT H +LE +A +AA++
Sbjct: 167 SYNFLGLAASYDESMRTVKDVLEEYGLGVASTRHEMGTLDKHEELENLVAKFLNVEAAMV 226
Query: 755 FSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNSGVPKYIFRHNDVHHLRELL 934
F F N + L GC I SD NHAS++ G R SG IF+HN++ L +LL
Sbjct: 227 FGMGFATNSMNIPALVGK--GCLILSDELNHASLVLGARLSGATIRIFKHNNMQSLEKLL 284
Query: 935 QRS----DPAVPK-----IVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGLY 1087
+ + P V + ++ E ++SM+G++ L ++ + ++ A ++DE H++G
Sbjct: 285 RDAVIYGQPRVRRAWKKILILVEGIYSMEGSIVHLPQIVALKKKYKAYLYIDEAHSIGSV 344
Query: 1088 XXXXXXXXXXXXVMPK-MDIISGTLGKAFGCVGGYIASTNSLVDTIRSYAAGFIFTTSLP 1264
+ P+ +D++ GT K+FG GGYIA LVD +R ++ ++ TS+
Sbjct: 345 GPTGRGVVEFFGLDPRDVDVLMGTFTKSFGAAGGYIAGRKELVDYLRVHSHSAVYATSMS 404
Query: 1265 PMVLAGALESVRILK----SAEGRALRRQHQRNVKLMRQMLMDAGLPVI-HCPSHIIPVR 1429
P V + S++++ + EG RQ +N + RQ L + G + + S +IP+
Sbjct: 405 PPVAEQIIRSMKLIMGLDGTTEGLQRVRQLAKNTRYFRQRLNEMGFIIYGNEESPVIPLL 464
Query: 1430 VSDAAKNTEICDELMSRYNIYVQAINYPTVPRGGRAAADCPHAPST 1567
+ AK L++R I V + +P P A C A T
Sbjct: 465 LYMPAKVAAFARHLLNR-KIGVVVVGFPATPLAEARARFCISAAHT 509
>ref|XP_537524.2| PREDICTED: similar to serine palmitoyltransferase, long chain base
subunit 2 [Canis familiaris].
Length = 691
Score = 136 bits (343), Expect = 5e-32
Identities = 112/435 (25%), Positives = 202/435 (46%), Gaps = 26/435 (5%)
Frame = +2
Query: 341 QDIMRKQRPEGVSHLLQDNLPKS-VSTFQ-YDRFFEKKIDEKKNDHTYRVFKTV------ 496
+D +R R E H + + VS +Q ++ F+ + + + D+ R +V
Sbjct: 217 RDFLRHWRIEKCHHATERKEQQDFVSLYQDFENFYTRNLYMRIRDNWNRPICSVPGARVD 276
Query: 497 --NRKAQCFPMADDYSDSLVSKRQVSVWCSNDYLGMSRHPRVCG-AVIDTLKQYGTGAGG 667
R++ + + Y+ +++ + V S +YLG +R+ C A L++YG G
Sbjct: 277 IMERQSHDYNWSFKYTGNVI--KGVINMGSYNYLGFARNTGACQEAAAKVLEEYGVGVCS 334
Query: 668 TRNISGTSKFHVDLEQELADLHGKDAALLFSSCFVANDSTLFTLAKMMPGCEIYSDSGNH 847
TR G H +LE+ +A G +AA+ + F N + L GC I SD NH
Sbjct: 335 TRQEIGNLDKHEELEKLVASFLGVEAAMAYGMGFATNSMNIPALVGK--GCLILSDELNH 392
Query: 848 ASMIQGIRNSGVPKYIFRHNDVHHLRELLQRS---------DPAVPKIVAFETVHSMDGA 1000
AS++ G R SG IF+HN++ L +LL+ + P ++ E ++SM+G+
Sbjct: 393 ASLVLGARLSGATIRIFKHNNMQSLEKLLKDAIVYGQPRTRRPWKKILILVEGIYSMEGS 452
Query: 1001 VCPLEELCDVAHEFGAITFVDEVHAVGLYXXXXXXXXXXXXVMPK-MDIISGTLGKAFGC 1177
+ L E+ + ++ A ++DE H++G + P+ +D++ GT K+FG
Sbjct: 453 IVRLPEVIALKKKYKAYLYLDEAHSIGALGPSGRGVVDYFGLDPEDVDVMMGTFTKSFGA 512
Query: 1178 VGGYIASTNSLVDTIRSYAAGFIFTTSLPPMVLAGALESVRILKSAEGRALRR----QHQ 1345
GGYI L+D +R+++ ++ TSL V+ + S++ + +G L + Q
Sbjct: 513 SGGYIGGKKELIDYLRTHSHSAVYATSLSAPVVEQIVTSMKCIMGQDGTTLGKQCIQQLA 572
Query: 1346 RNVKLMRQMLMDAGLPVI-HCPSHIIPVRVSDAAKNTEICDELMSRYNIYVQAINYPTVP 1522
N + R+ L + G + + S ++P+ + AK E++ R NI V + +P P
Sbjct: 573 ENTRYFRRRLKEMGFIIYGNEDSPVVPLMLYMPAKIGAFGREMLKR-NIGVVVVGFPATP 631
Query: 1523 RGGRAAADCPHAPST 1567
A C A T
Sbjct: 632 IIESRARFCLSAAHT 646
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 70,658,249
Number of extensions: 1995891
Number of successful extensions: 8354
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 8307
Number of HSP's successfully gapped: 18
Length of query: 560
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 452
Effective length of database: 15,274,216
Effective search space: 6903945632
Effective search space used: 6903945632
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012735
(1681 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001094624.1| 5-aminolevulinate synthase, nonspecific, mit... 933 0.0
Alignment gi|NP_001030275.1| 5-aminolevulinate synthase, erythroid-specif... 599 e-171
Alignment gi|NP_001068602.1| 2-amino-3-ketobutyrate coenzyme A ligase, mi... 194 2e-49
Alignment gi|NP_001092551.1| serine palmitoyltransferase 2 [Bos taurus]. 140 4e-33
Alignment gi|XP_002692086.1| PREDICTED: serine palmitoyltransferase, long... 136 6e-32
Alignment gi|XP_602826.3| PREDICTED: serine palmitoyltransferase, long ch... 127 4e-29
Alignment gi|NP_001029921.1| serine palmitoyltransferase 1 [Bos taurus]. 107 2e-23
>ref|NP_001094624.1| 5-aminolevulinate synthase, nonspecific, mitochondrial precursor [Bos
taurus].
Length = 647
Score = 933 bits (2412), Expect = 0.0
Identities = 465/529 (87%), Positives = 486/529 (91%), Gaps = 7/529 (1%)
Frame = +2
Query: 8 ETPPANEKDKTAKAEVQQAPDGSQRTPDG-------TQLPTGHPSPASSQSTASKCPFLA 166
ETPPANEKDK AKAEVQQAPDGSQ+ PDG TQLP+GHPS ASSQ T SKCPFLA
Sbjct: 60 ETPPANEKDKAAKAEVQQAPDGSQQAPDGSQQTADGTQLPSGHPSLASSQGTGSKCPFLA 119
Query: 167 AQMSQGGSSVFRKASLELQEDVQEMHAVREEVAQTSVNPSVINVKTDGGEPSGLLKNFQD 346
A+MSQGGSSVFRKASL LQEDVQEMHAVREEVAQTSVNPSVINVKT+GGE +GLLKNFQD
Sbjct: 120 AEMSQGGSSVFRKASLALQEDVQEMHAVREEVAQTSVNPSVINVKTEGGELNGLLKNFQD 179
Query: 347 IMRKQRPEGVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRKAQCFPMA 526
IMRKQRPE VSHLLQDNLPKSV TFQYDRFFEKKIDEKKNDH+YRVFKTVNRKAQCFPMA
Sbjct: 180 IMRKQRPERVSHLLQDNLPKSVCTFQYDRFFEKKIDEKKNDHSYRVFKTVNRKAQCFPMA 239
Query: 527 DDYSDSLVSKRQVSVWCSNDYLGMSRHPRVCGAVIDTLKQYGTGAGGTRNISGTSKFHVD 706
DDYSDSL+SK+QVSVWCSNDYLGMSRHPRVCGAVIDTLKQ+GTGAGGTRNISGTSKFHVD
Sbjct: 240 DDYSDSLISKKQVSVWCSNDYLGMSRHPRVCGAVIDTLKQHGTGAGGTRNISGTSKFHVD 299
Query: 707 LEQELADLHGKDAALLFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNSGVP 886
LEQELADLHGKDAALLFSSCFVANDSTLFTLAKMMPGCEIYSD+GNHASMIQGIRNSGVP
Sbjct: 300 LEQELADLHGKDAALLFSSCFVANDSTLFTLAKMMPGCEIYSDAGNHASMIQGIRNSGVP 359
Query: 887 KYIFRHNDVHHLRELLQRSDPAVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDE 1066
KYIFRHNDV HLRELLQRSDPAVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDE
Sbjct: 360 KYIFRHNDVSHLRELLQRSDPAVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDE 419
Query: 1067 VHAVGLYXXXXXXXXXXXXVMPKMDIISGTLGKAFGCVGGYIASTNSLVDTIRSYAAGFI 1246
VHAVGLY VMPKMDIISGTLGKA GCVGGYIAST+SL+DT+RSYAAGFI
Sbjct: 420 VHAVGLYGLQGGGIGDRDGVMPKMDIISGTLGKAIGCVGGYIASTSSLIDTVRSYAAGFI 479
Query: 1247 FTTSLPPMVLAGALESVRILKSAEGRALRRQHQRNVKLMRQMLMDAGLPVIHCPSHIIPV 1426
FTTSLPPM+LAGALESVRIL+S EGR LRRQHQRNVKLMRQMLMDAGLPV+HCPSHIIPV
Sbjct: 480 FTTSLPPMLLAGALESVRILRSTEGRTLRRQHQRNVKLMRQMLMDAGLPVVHCPSHIIPV 539
Query: 1427 RVSDAAKNTEICDELMSRYNIYVQAINYPTVPRGGRAAADCPHAPSTPR 1573
RV+DAAKNTE+CDELM+R+NIYVQAINYPTVPRG P TP+
Sbjct: 540 RVADAAKNTEVCDELMTRHNIYVQAINYPTVPRGEELLRIAPTPHHTPQ 588
Score = 55.5 bits (132), Expect = 1e-07
Identities = 28/51 (54%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Frame = +1
Query: 1522 PGGKSCCGLPPRPLHPPEMMTNFVDNLLAAWKQVGLELSTFLS-*VNFCRR 1671
P G+ + P P H P+MM+ FVDNLLA WK+VGLEL S NFCRR
Sbjct: 571 PRGEELLRIAPTPHHTPQMMSYFVDNLLATWKRVGLELKPHSSAECNFCRR 621
>ref|NP_001030275.1| 5-aminolevulinate synthase, erythroid-specific, mitochondrial
precursor [Bos taurus].
Length = 587
Score = 599 bits (1544), Expect = e-171
Identities = 310/504 (61%), Positives = 372/504 (73%), Gaps = 3/504 (0%)
Frame = +2
Query: 59 QAPDGSQRTPDGTQLPTGHPSPASSQSTASKCPFLAAQMSQGGSSVFRKASLELQEDVQE 238
Q P SQ T+ PS A S CPF+ ++ G S + +KA+ E+QEDV+
Sbjct: 44 QGPSFSQIHLKATKAGGDSPSWAKSH-----CPFMLLELQDGKSKIVQKAAPEVQEDVKT 98
Query: 239 MHAVREEVAQTSVNPSVINVKTDGGEPSGLLKNFQDIMRKQRPEGVSHLLQDNLPKSVST 418
+ ++ + + S+ + EP ++ E V+HL+Q+N+
Sbjct: 99 F---KTDLPTSLASTSLKKTFSSPQEP------------EKNSEKVTHLIQNNMAGD-HV 142
Query: 419 FQYDRFFEKKIDEKKNDHTYRVFKTVNRKAQCFPMADDYSDSLVSKRQVSVWCSNDYLGM 598
F YD+FF KI EKK DHTYRVFKTVNR A +P A+ + ++ V+ + VSVWCSNDYLGM
Sbjct: 143 FGYDQFFRDKIMEKKQDHTYRVFKTVNRWADAYPFAEHFFEASVASKDVSVWCSNDYLGM 202
Query: 599 SRHPRVCGAVIDTLKQYGTGAGGTRNISGTSKFHVDLEQELADLHGKDAALLFSSCFVAN 778
SRHPRV A + L+++G GAGGTRNISGTSKFHV+LEQELA+LH KD+ALLFSSCFVAN
Sbjct: 203 SRHPRVLQATQEILQRHGAGAGGTRNISGTSKFHVELEQELAELHQKDSALLFSSCFVAN 262
Query: 779 DSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNSGVPKYIFRHNDVHHLRELLQRSDPAVP 958
DSTLFTLAK++PGCEIYSD+GNHASMIQGIRNSG K++FRHND HL++LL++S+P P
Sbjct: 263 DSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAAKFVFRHNDPDHLKKLLKKSNPETP 322
Query: 959 KIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGLYXXXXXXXXXXXXVMPKM 1138
KIVAFETVHSMDGA+CPLEELCDVAH++GA+TFVDEVHAVGLY +M K+
Sbjct: 323 KIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHKI 382
Query: 1139 DIISGTLGKAFGCVGGYIASTNSLVDTIRSYAAGFIFTTSLPPMVLAGALESVRILKSAE 1318
DIISGTLGKAFGCVGGYIAST LVD +RSYAAGFIFTTSLPPMVL+GALESVR+LK E
Sbjct: 383 DIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEE 442
Query: 1319 GRALRRQHQRNVKLMRQMLMDAGLPVIHCPSHIIPVRVSDAAKNTEICDELMSRYNIYVQ 1498
G+ALRR HQRNVK MRQ+LMD GLPVI CPSHIIP+RV DA NT ICD L+S+Y IYVQ
Sbjct: 443 GQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRVGDAMLNTRICDLLLSKYGIYVQ 502
Query: 1499 AINYPTVPRGG---RAAADCPHAP 1561
AINYPTVPRG R A H+P
Sbjct: 503 AINYPTVPRGEELLRLAPSPHHSP 526
>ref|NP_001068602.1| 2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial precursor
[Bos taurus].
Length = 419
Score = 194 bits (494), Expect = 2e-49
Identities = 115/320 (35%), Positives = 167/320 (52%), Gaps = 1/320 (0%)
Frame = +2
Query: 572 WCSNDYLGMSRHPRVCGAVIDTLKQYGTGAGGTRNISGTSKFHVDLEQELADLHGKDAAL 751
+C+N+YLG+S HP V A + TLK++G G R I GT H DLE ++A H ++ A+
Sbjct: 70 FCANNYLGLSSHPEVIQAGLRTLKEFGAGLSSVRFICGTQSIHKDLEAKIARFHQREDAI 129
Query: 752 LFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNSGVPKYIFRHNDVHHLREL 931
L+ SCF AN L + SD NHAS+I GIR KY +RH D+ L
Sbjct: 130 LYPSCFDANTGLFEALLTSEDA--VLSDELNHASIIDGIRLCKAHKYRYRHLDMADLEAK 187
Query: 932 LQRSDPAVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGLYXXXXXXXX 1111
LQ + ++VA + SMDG + PL+E+C +A ++GA+ FVDE HA G
Sbjct: 188 LQEAQKHRLRLVATDGAFSMDGDIAPLQEICRLASQYGALVFVDESHATGFLGATGRGTD 247
Query: 1112 XXXXVMPKMDIISGTLGKAF-GCVGGYIASTNSLVDTIRSYAAGFIFTTSLPPMVLAGAL 1288
VM ++ II+ TLGKA G GGY +LV +R A ++F+ SLPP + A
Sbjct: 248 ELLGVMDQVTIINSTLGKALGGASGGYTTGPGALVSLLRQRARPYLFSNSLPPAAVGCAS 307
Query: 1289 ESVRILKSAEGRALRRQHQRNVKLMRQMLMDAGLPVIHCPSHIIPVRVSDAAKNTEICDE 1468
+++ +L E A+ + R + AG + I PV + DA I D+
Sbjct: 308 KALDLL--MESNAIVQSMAAKTLRFRSQMEAAGFTISGANHPICPVMLGDARLALNIADD 365
Query: 1469 LMSRYNIYVQAINYPTVPRG 1528
++ R I+V +YP VP+G
Sbjct: 366 MLKR-GIFVIGFSYPVVPKG 384
>ref|NP_001092551.1| serine palmitoyltransferase 2 [Bos taurus].
Length = 562
Score = 140 bits (352), Expect = 4e-33
Identities = 113/435 (25%), Positives = 203/435 (46%), Gaps = 26/435 (5%)
Frame = +2
Query: 341 QDIMRKQRPEGVSHLLQDNLPKS-VSTFQ-YDRFFEKKIDEKKNDHTYRVFKTV------ 496
+D +R R E H + K VS +Q ++ F+ + + + D+ R +V
Sbjct: 88 RDFLRHWRIEKCHHATEREEQKDFVSLYQDFENFYTRNLYMRIRDNWNRPICSVPGARVD 147
Query: 497 --NRKAQCFPMADDYSDSLVSKRQVSVWCSNDYLGMSRHPRVCG-AVIDTLKQYGTGAGG 667
R++ + + Y+ +++ + V S +YLG +R+ C A L++YG G
Sbjct: 148 IMERQSHDYNWSFKYTGNVI--KDVINMGSYNYLGFARNTGPCQEAAAKVLEEYGVGVCS 205
Query: 668 TRNISGTSKFHVDLEQELADLHGKDAALLFSSCFVANDSTLFTLAKMMPGCEIYSDSGNH 847
TR G H +LE+ +A+ G +AA+ + F N + L GC I SD NH
Sbjct: 206 TRQEIGNLDKHEELEKLVANFLGVEAAMAYGMGFATNSMNIPALVSK--GCLILSDELNH 263
Query: 848 ASMIQGIRNSGVPKYIFRHNDVHHLRELLQRS---------DPAVPKIVAFETVHSMDGA 1000
AS++ G R SG +F+HN++ L +LL+ + P ++ E ++SM+G+
Sbjct: 264 ASLVLGARLSGATIRVFKHNNMQSLEKLLKDAIVYGQPRTRRPWKKILILVEGIYSMEGS 323
Query: 1001 VCPLEELCDVAHEFGAITFVDEVHAVGLYXXXXXXXXXXXXVMPK-MDIISGTLGKAFGC 1177
+ L E+ + ++ A ++DE H++G + P+ +DI+ GT K+FG
Sbjct: 324 IVRLPEVIALKKKYKAYLYLDEAHSIGALGPTGRGVVDYFGLDPEDVDIMMGTFTKSFGA 383
Query: 1178 VGGYIASTNSLVDTIRSYAAGFIFTTSLPPMVLAGALESVRILKSAEGRALRR----QHQ 1345
GGYI +L+D +R+++ ++ SL P V + +++ + +G L + Q
Sbjct: 384 SGGYIGGKKALIDYLRTHSHSAVYAASLSPPVAEQIITAMKCIMGQDGTTLGKECIQQLA 443
Query: 1346 RNVKLMRQMLMDAGLPVI-HCPSHIIPVRVSDAAKNTEICDELMSRYNIYVQAINYPTVP 1522
NV+ R+ L G + + S ++P+ + AK E++ R NI V + +P P
Sbjct: 444 ENVRYFRRRLKSMGFIIYGNEDSPVVPLMLYMPAKIGAFGREMLKR-NIGVVVVGFPATP 502
Query: 1523 RGGRAAADCPHAPST 1567
A C A T
Sbjct: 503 IIESRARFCLSAAHT 517
>ref|XP_002692086.1| PREDICTED: serine palmitoyltransferase, long chain base subunit
2-like [Bos taurus].
Length = 549
Score = 136 bits (342), Expect = 6e-32
Identities = 101/346 (29%), Positives = 167/346 (48%), Gaps = 16/346 (4%)
Frame = +2
Query: 578 SNDYLGMS-RHPRVCGAVIDTLKQYGTGAGGTRNISGTSKFHVDLEQELADLHGKDAALL 754
S ++LG++ ++ V + ++ YG G G TR GT H +LE +A +AA++
Sbjct: 164 SYNFLGLAAKYDESMRTVKEVIETYGLGVGSTRQEMGTLDKHKELEDLVAKFLNVEAAMV 223
Query: 755 FSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNSGVPKYIFRHNDVHHLRELL 934
F F N + L GC I SD NHAS++ G R SG IF+HN+V L +LL
Sbjct: 224 FGMGFATNSMNIPALVGK--GCLILSDELNHASLVLGARLSGATIRIFKHNNVQSLEKLL 281
Query: 935 Q--------RSDPAVPKI-VAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGLY 1087
+ R+ A KI + E ++SM+G++ L ++ + ++ A ++DE H++G
Sbjct: 282 RDAVIYGQPRTRRAWRKILILVEGIYSMEGSIVHLPDIVALKKKYKAYLYMDEAHSIGSV 341
Query: 1088 XXXXXXXXXXXXVMPK-MDIISGTLGKAFGCVGGYIASTNSLVDTIRSYAAGFIFTTSLP 1264
+ P+ +D+ GT K+FG GGYIA LVD +R+++ + TS+
Sbjct: 342 GPTGRGVVEFFGLDPRDIDVYMGTFTKSFGAAGGYIAGRKDLVDYLRTHSHSAAYGTSMS 401
Query: 1265 PMVLAGALESVRILKSAEG--RALRRQHQ--RNVKLMRQMLMDAGLPVI-HCPSHIIPVR 1429
P V + ++++ +G L+R Q +N + RQ L G V + S ++P+
Sbjct: 402 PPVAEQIIRVMKLIMGLDGTTEGLQRVQQLAKNTRYFRQRLSKMGFIVYGNEESPVVPLL 461
Query: 1430 VSDAAKNTEICDELMSRYNIYVQAINYPTVPRGGRAAADCPHAPST 1567
+ AK L++R I V + +P P A C A T
Sbjct: 462 LYMPAKVAAFARHLLNR-KIGVVVVGFPATPLAEARARFCVSAAHT 506
>ref|XP_602826.3| PREDICTED: serine palmitoyltransferase, long chain base subunit 2
[Bos taurus].
Length = 469
Score = 127 bits (318), Expect = 4e-29
Identities = 91/306 (29%), Positives = 153/306 (50%), Gaps = 16/306 (5%)
Frame = +2
Query: 578 SNDYLGMS-RHPRVCGAVIDTLKQYGTGAGGTRNISGTSKFHVDLEQELADLHGKDAALL 754
S ++LG++ ++ V + ++ YG G G TR GT H +LE +A +AA++
Sbjct: 164 SYNFLGLAAKYDESMRTVKEVIETYGLGVGSTRQEMGTLDKHKELEDLVAKFLNVEAAMV 223
Query: 755 FSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNSGVPKYIFRHNDVHHLRELL 934
F F N + L GC I SD NHAS++ G R SG IF+HN+V L +LL
Sbjct: 224 FGMGFATNSMNIPALVGK--GCLILSDELNHASLVLGARLSGATIRIFKHNNVQSLEKLL 281
Query: 935 Q--------RSDPAVPKI-VAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGLY 1087
+ R+ A KI + E ++SM+G++ L ++ + ++ A ++DE H++G
Sbjct: 282 RDAVIYGQPRTRRAWRKILILVEGIYSMEGSIVHLPDIVALKKKYKAYLYMDEAHSIGSV 341
Query: 1088 XXXXXXXXXXXXVMPK-MDIISGTLGKAFGCVGGYIASTNSLVDTIRSYAAGFIFTTSLP 1264
+ P+ +D+ GT K+FG GGYIA LVD +R+++ + TS+
Sbjct: 342 GPTGRGVVEFFGLDPRDIDVYMGTFTKSFGAAGGYIAGRKDLVDYLRTHSHSAAYGTSMS 401
Query: 1265 PMVLAGALESVRILKSAEG--RALRRQHQ--RNVKLMRQMLMDAGLPVI-HCPSHIIPVR 1429
P V + ++++ +G L+R Q +N + RQ L G V + S ++P+
Sbjct: 402 PPVAEQIIRVMKLIMGLDGTTEGLQRVQQLAKNTRYFRQRLSKMGFIVYGNEESPVVPLL 461
Query: 1430 VSDAAK 1447
+ AK
Sbjct: 462 LYMPAK 467
>ref|NP_001029921.1| serine palmitoyltransferase 1 [Bos taurus].
Length = 473
Score = 107 bits (268), Expect = 2e-23
Identities = 69/270 (25%), Positives = 131/270 (48%), Gaps = 11/270 (4%)
Frame = +2
Query: 545 LVSKRQVSVWCSNDYLGMSRHPRVCGAVIDTLKQYGTGAGGTRNISGTSKFHVDLEQELA 724
+V+ ++ + S ++LG+ +PR+ A + +LK+YG G G R GT H+DLE LA
Sbjct: 94 VVNGKECINFASFNFLGLLDNPRLKAAALASLKKYGVGTCGPRGFYGTFDVHLDLEDRLA 153
Query: 725 DLHGKDAALLFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNSGVPKYIFRH 904
+ A+++S F S + +K G ++ D ++ +G++ S +F H
Sbjct: 154 KFMKTEEAIIYSYGFATIASAIPAYSKR--GDIVFVDKAACFAIQKGLQASRSDIKVFNH 211
Query: 905 NDVHHLRELLQ----------RSDPAVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAIT 1054
ND+ L LL+ R + + E ++ G VCPL EL + +++ A
Sbjct: 212 NDMDDLERLLKEQEIEDQKNPRKARVTRRFIIVEGLYMNTGTVCPLPELVKLKYKYKARI 271
Query: 1055 FVDEVHAVGLYXXXXXXXXXXXXV-MPKMDIISGTLGKAFGCVGGYIASTNSLVDTIRSY 1231
F++E + G+ + + +D+IS + + +GG+ + ++D R
Sbjct: 272 FLEESLSFGVLGEHGRGVTEHFGISIDDIDLISANMENSLASIGGFCCGRSFVIDHQRLS 331
Query: 1232 AAGFIFTTSLPPMVLAGALESVRILKSAEG 1321
G+ F+ SLPP++ A A+E++ I++ G
Sbjct: 332 GQGYCFSASLPPLLAAAAIEALNIMEENPG 361
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 67,677,497
Number of extensions: 1935138
Number of successful extensions: 8017
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 7969
Number of HSP's successfully gapped: 8
Length of query: 560
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 453
Effective length of database: 14,140,958
Effective search space: 6405853974
Effective search space used: 6405853974
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012735
(1681 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003132298.1| PREDICTED: 5-aminolevulinate synthase, nonsp... 882 0.0
Alignment gi|XP_003360385.1| PREDICTED: 5-aminolevulinate synthase, eryth... 596 e-170
Alignment gi|XP_003360387.1| PREDICTED: 5-aminolevulinate synthase, eryth... 575 e-164
Alignment gi|XP_003360386.1| PREDICTED: 5-aminolevulinate synthase, eryth... 575 e-164
Alignment gi|XP_003126086.1| PREDICTED: 2-amino-3-ketobutyrate coenzyme A... 195 7e-50
Alignment gi|XP_003126081.1| PREDICTED: 2-amino-3-ketobutyrate coenzyme A... 195 7e-50
Alignment gi|XP_003134305.1| PREDICTED: serine palmitoyltransferase 3 [Su... 148 8e-36
Alignment gi|XP_001926625.3| PREDICTED: serine palmitoyltransferase 2, pa... 140 3e-33
>ref|XP_003132298.1| PREDICTED: 5-aminolevulinate synthase, nonspecific,
mitochondrial-like isoform 1 [Sus scrofa].
Length = 526
Score = 882 bits (2280), Expect = 0.0
Identities = 443/467 (94%), Positives = 444/467 (95%)
Frame = +2
Query: 173 MSQGGSSVFRKASLELQEDVQEMHAVREEVAQTSVNPSVINVKTDGGEPSGLLKNFQDIM 352
MSQGGSSVFRKASLELQEDVQEMHAVREEVAQTSVNPSVINVKTDGGEPSGLLKNFQDIM
Sbjct: 1 MSQGGSSVFRKASLELQEDVQEMHAVREEVAQTSVNPSVINVKTDGGEPSGLLKNFQDIM 60
Query: 353 RKQRPEGVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRKAQCFPMADD 532
RKQRPEGVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRKAQCFPMADD
Sbjct: 61 RKQRPEGVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRKAQCFPMADD 120
Query: 533 YSDSLVSKRQVSVWCSNDYLGMSRHPRVCGAVIDTLKQYGTGAGGTRNISGTSKFHVDLE 712
YSDSLVSKRQVSVWCSNDYLGMSRHPRVCGAVIDTLKQYGTGAGGTRNISGTSKFHVDLE
Sbjct: 121 YSDSLVSKRQVSVWCSNDYLGMSRHPRVCGAVIDTLKQYGTGAGGTRNISGTSKFHVDLE 180
Query: 713 QELADLHGKDAALLFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNSGVPKY 892
QELADLHGKDAALLFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNSGVPKY
Sbjct: 181 QELADLHGKDAALLFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNSGVPKY 240
Query: 893 IFRHNDVHHLRELLQRSDPAVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVH 1072
IFRHNDVHHLRELLQRSDPAVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVH
Sbjct: 241 IFRHNDVHHLRELLQRSDPAVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVH 300
Query: 1073 AVGLYXXXXXXXXXXXXVMPKMDIISGTLGKAFGCVGGYIASTNSLVDTIRSYAAGFIFT 1252
AVGLY VMPKMDIISGTLGKAFGCVGGYIASTNSLVDTIRSYAAGFIFT
Sbjct: 301 AVGLYGAQGGGIGDRDGVMPKMDIISGTLGKAFGCVGGYIASTNSLVDTIRSYAAGFIFT 360
Query: 1253 TSLPPMVLAGALESVRILKSAEGRALRRQHQRNVKLMRQMLMDAGLPVIHCPSHIIPVRV 1432
TSLPPMVLAGALESVRILKSAEGRALRRQHQRNVKLMRQMLMDAGLPVIHCPSHIIPVRV
Sbjct: 361 TSLPPMVLAGALESVRILKSAEGRALRRQHQRNVKLMRQMLMDAGLPVIHCPSHIIPVRV 420
Query: 1433 SDAAKNTEICDELMSRYNIYVQAINYPTVPRGGRAAADCPHAPSTPR 1573
SDAAKNTEICDELMSRYNIYVQAINYPTVPRG P TP+
Sbjct: 421 SDAAKNTEICDELMSRYNIYVQAINYPTVPRGEELLRIAPTPLHTPQ 467
Score = 65.9 bits (159), Expect = 7e-11
Identities = 33/51 (64%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Frame = +1
Query: 1522 PGGKSCCGLPPRPLHPPEMMTNFVDNLLAAWKQVGLELSTFLS-*VNFCRR 1671
P G+ + P PLH P+MMTNFVDNLLAAWKQVGLEL S NFCRR
Sbjct: 450 PRGEELLRIAPTPLHTPQMMTNFVDNLLAAWKQVGLELKPHSSAECNFCRR 500
>ref|XP_003360385.1| PREDICTED: 5-aminolevulinate synthase, erythroid-specific,
mitochondrial-like isoform 1 [Sus scrofa].
Length = 587
Score = 596 bits (1537), Expect = e-170
Identities = 310/505 (61%), Positives = 376/505 (74%), Gaps = 4/505 (0%)
Frame = +2
Query: 59 QAPDGSQRTPDGTQLPTGHPSPASSQSTASKCPFLAAQMSQGGSSVFRKASLELQEDVQE 238
Q P SQ T+ PS A S CPF+ +++ G S + +KA+ E+QEDV+
Sbjct: 44 QGPTCSQIHLKATKAGGDSPSWAKSH-----CPFMLSELQDGKSKIVQKAAPEVQEDVKT 98
Query: 239 MHAVREEVAQTSVNPSVINVKTDGGEPSGLLKNFQDIMRKQR-PEGVSHLLQDNLPKSVS 415
+T + S+ + + L K F ++ + V+HL+Q+N+P +
Sbjct: 99 F--------KTDLPISLAS--------ASLKKPFSSAQDPEKNSKKVTHLIQNNMPGN-H 141
Query: 416 TFQYDRFFEKKIDEKKNDHTYRVFKTVNRKAQCFPMADDYSDSLVSKRQVSVWCSNDYLG 595
F YD+FF KI EKK DHTYRVFKTVNR A +P A+ + ++ V + VSVWCSNDYLG
Sbjct: 142 FFGYDQFFRDKIMEKKQDHTYRVFKTVNRWADAYPFAEHFFEASVPSKDVSVWCSNDYLG 201
Query: 596 MSRHPRVCGAVIDTLKQYGTGAGGTRNISGTSKFHVDLEQELADLHGKDAALLFSSCFVA 775
MSRHPRV A +TL+++G GAGGTRNISGTSKFHV++EQELA+LH KD+ALLFSSCFVA
Sbjct: 202 MSRHPRVLQATQETLQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSALLFSSCFVA 261
Query: 776 NDSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNSGVPKYIFRHNDVHHLRELLQRSDPAV 955
NDSTLFTLAK++PGCEIYSD+GNHASMIQGIRNSG K++FRHND HL++LL++S+P
Sbjct: 262 NDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKLLEKSNPVT 321
Query: 956 PKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGLYXXXXXXXXXXXXVMPK 1135
PKIVAFETVHSMDGA+CPLEELCDVAH++GA+TFVDEVHAVGLY +M K
Sbjct: 322 PKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHK 381
Query: 1136 MDIISGTLGKAFGCVGGYIASTNSLVDTIRSYAAGFIFTTSLPPMVLAGALESVRILKSA 1315
+DIISGTLGKAFGCVGGYIAST LVD +RSYAAGFIFTTSLPPMVL+GALESVR+LK
Sbjct: 382 IDIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGE 441
Query: 1316 EGRALRRQHQRNVKLMRQMLMDAGLPVIHCPSHIIPVRVSDAAKNTEICDELMSRYNIYV 1495
EG+ALRR HQRNVK MRQ+LMD GLPVI CPSHIIP+RV +AA N+ ICD L+S++ IYV
Sbjct: 442 EGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSRICDLLLSKHGIYV 501
Query: 1496 QAINYPTVPRGG---RAAADCPHAP 1561
QAINYPTVPRG R A H+P
Sbjct: 502 QAINYPTVPRGEELLRLAPSPHHSP 526
Score = 49.7 bits (117), Expect = 5e-06
Identities = 25/51 (49%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = +1
Query: 1522 PGGKSCCGLPPRPLHPPEMMTNFVDNLLAAWKQVGLEL-STFLS*VNFCRR 1671
P G+ L P P H P+MM +FV+ LLAAW +VGL L ++ NFCRR
Sbjct: 510 PRGEELLRLAPSPHHSPQMMEDFVEKLLAAWIEVGLPLQDVSMTACNFCRR 560
>ref|XP_003360387.1| PREDICTED: 5-aminolevulinate synthase, erythroid-specific,
mitochondrial-like isoform 3 [Sus scrofa].
Length = 550
Score = 575 bits (1481), Expect = e-164
Identities = 288/431 (66%), Positives = 339/431 (78%), Gaps = 13/431 (3%)
Frame = +2
Query: 308 GGEPSGLLKNFQDIMRKQRPEGVSHLLQDNLPK---SVSTFQ-------YDRFFEKKIDE 457
GG+ K+ M + +G S ++Q P+ V TF+ YD+FF KI E
Sbjct: 59 GGDSPSWAKSHCPFMLSELQDGKSKIVQKAAPEVQEDVKTFKTGNHFFGYDQFFRDKIME 118
Query: 458 KKNDHTYRVFKTVNRKAQCFPMADDYSDSLVSKRQVSVWCSNDYLGMSRHPRVCGAVIDT 637
KK DHTYRVFKTVNR A +P A+ + ++ V + VSVWCSNDYLGMSRHPRV A +T
Sbjct: 119 KKQDHTYRVFKTVNRWADAYPFAEHFFEASVPSKDVSVWCSNDYLGMSRHPRVLQATQET 178
Query: 638 LKQYGTGAGGTRNISGTSKFHVDLEQELADLHGKDAALLFSSCFVANDSTLFTLAKMMPG 817
L+++G GAGGTRNISGTSKFHV++EQELA+LH KD+ALLFSSCFVANDSTLFTLAK++PG
Sbjct: 179 LQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSALLFSSCFVANDSTLFTLAKILPG 238
Query: 818 CEIYSDSGNHASMIQGIRNSGVPKYIFRHNDVHHLRELLQRSDPAVPKIVAFETVHSMDG 997
CEIYSD+GNHASMIQGIRNSG K++FRHND HL++LL++S+P PKIVAFETVHSMDG
Sbjct: 239 CEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKLLEKSNPVTPKIVAFETVHSMDG 298
Query: 998 AVCPLEELCDVAHEFGAITFVDEVHAVGLYXXXXXXXXXXXXVMPKMDIISGTLGKAFGC 1177
A+CPLEELCDVAH++GA+TFVDEVHAVGLY +M K+DIISGTLGKAFGC
Sbjct: 299 AICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHKIDIISGTLGKAFGC 358
Query: 1178 VGGYIASTNSLVDTIRSYAAGFIFTTSLPPMVLAGALESVRILKSAEGRALRRQHQRNVK 1357
VGGYIAST LVD +RSYAAGFIFTTSLPPMVL+GALESVR+LK EG+ALRR HQRNVK
Sbjct: 359 VGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQALRRAHQRNVK 418
Query: 1358 LMRQMLMDAGLPVIHCPSHIIPVRVSDAAKNTEICDELMSRYNIYVQAINYPTVPRGG-- 1531
MRQ+LMD GLPVI CPSHIIP+RV +AA N+ ICD L+S++ IYVQAINYPTVPRG
Sbjct: 419 HMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSRICDLLLSKHGIYVQAINYPTVPRGEEL 478
Query: 1532 -RAAADCPHAP 1561
R A H+P
Sbjct: 479 LRLAPSPHHSP 489
Score = 49.7 bits (117), Expect = 5e-06
Identities = 25/51 (49%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = +1
Query: 1522 PGGKSCCGLPPRPLHPPEMMTNFVDNLLAAWKQVGLEL-STFLS*VNFCRR 1671
P G+ L P P H P+MM +FV+ LLAAW +VGL L ++ NFCRR
Sbjct: 473 PRGEELLRLAPSPHHSPQMMEDFVEKLLAAWIEVGLPLQDVSMTACNFCRR 523
>ref|XP_003360386.1| PREDICTED: 5-aminolevulinate synthase, erythroid-specific,
mitochondrial-like isoform 2 [Sus scrofa].
Length = 550
Score = 575 bits (1481), Expect = e-164
Identities = 288/431 (66%), Positives = 339/431 (78%), Gaps = 13/431 (3%)
Frame = +2
Query: 308 GGEPSGLLKNFQDIMRKQRPEGVSHLLQDNLPK---SVSTFQ-------YDRFFEKKIDE 457
GG+ K+ M + +G S ++Q P+ V TF+ YD+FF KI E
Sbjct: 59 GGDSPSWAKSHCPFMLSELQDGKSKIVQKAAPEVQEDVKTFKTGNHFFGYDQFFRDKIME 118
Query: 458 KKNDHTYRVFKTVNRKAQCFPMADDYSDSLVSKRQVSVWCSNDYLGMSRHPRVCGAVIDT 637
KK DHTYRVFKTVNR A +P A+ + ++ V + VSVWCSNDYLGMSRHPRV A +T
Sbjct: 119 KKQDHTYRVFKTVNRWADAYPFAEHFFEASVPSKDVSVWCSNDYLGMSRHPRVLQATQET 178
Query: 638 LKQYGTGAGGTRNISGTSKFHVDLEQELADLHGKDAALLFSSCFVANDSTLFTLAKMMPG 817
L+++G GAGGTRNISGTSKFHV++EQELA+LH KD+ALLFSSCFVANDSTLFTLAK++PG
Sbjct: 179 LQRHGAGAGGTRNISGTSKFHVEVEQELAELHQKDSALLFSSCFVANDSTLFTLAKILPG 238
Query: 818 CEIYSDSGNHASMIQGIRNSGVPKYIFRHNDVHHLRELLQRSDPAVPKIVAFETVHSMDG 997
CEIYSD+GNHASMIQGIRNSG K++FRHND HL++LL++S+P PKIVAFETVHSMDG
Sbjct: 239 CEIYSDAGNHASMIQGIRNSGAVKFVFRHNDPEHLKKLLEKSNPVTPKIVAFETVHSMDG 298
Query: 998 AVCPLEELCDVAHEFGAITFVDEVHAVGLYXXXXXXXXXXXXVMPKMDIISGTLGKAFGC 1177
A+CPLEELCDVAH++GA+TFVDEVHAVGLY +M K+DIISGTLGKAFGC
Sbjct: 299 AICPLEELCDVAHQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHKIDIISGTLGKAFGC 358
Query: 1178 VGGYIASTNSLVDTIRSYAAGFIFTTSLPPMVLAGALESVRILKSAEGRALRRQHQRNVK 1357
VGGYIAST LVD +RSYAAGFIFTTSLPPMVL+GALESVR+LK EG+ALRR HQRNVK
Sbjct: 359 VGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQALRRAHQRNVK 418
Query: 1358 LMRQMLMDAGLPVIHCPSHIIPVRVSDAAKNTEICDELMSRYNIYVQAINYPTVPRGG-- 1531
MRQ+LMD GLPVI CPSHIIP+RV +AA N+ ICD L+S++ IYVQAINYPTVPRG
Sbjct: 419 HMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSRICDLLLSKHGIYVQAINYPTVPRGEEL 478
Query: 1532 -RAAADCPHAP 1561
R A H+P
Sbjct: 479 LRLAPSPHHSP 489
Score = 49.7 bits (117), Expect = 5e-06
Identities = 25/51 (49%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = +1
Query: 1522 PGGKSCCGLPPRPLHPPEMMTNFVDNLLAAWKQVGLEL-STFLS*VNFCRR 1671
P G+ L P P H P+MM +FV+ LLAAW +VGL L ++ NFCRR
Sbjct: 473 PRGEELLRLAPSPHHSPQMMEDFVEKLLAAWIEVGLPLQDVSMTACNFCRR 523
>ref|XP_003126086.1| PREDICTED: 2-amino-3-ketobutyrate coenzyme A ligase,
mitochondrial-like isoform 1 [Sus scrofa].
Length = 419
Score = 195 bits (495), Expect = 7e-50
Identities = 116/320 (36%), Positives = 174/320 (54%), Gaps = 1/320 (0%)
Frame = +2
Query: 572 WCSNDYLGMSRHPRVCGAVIDTLKQYGTGAGGTRNISGTSKFHVDLEQELADLHGKDAAL 751
+C+N+YLG+S HP V A + L+++G G R I GT H DLE ++A H ++ A+
Sbjct: 70 FCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKDLEAKIARFHQREDAI 129
Query: 752 LFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNSGVPKYIFRHNDVHHLREL 931
L+ SCF AN + LF A + P + SD NHAS+I GIR KY +RH DV L
Sbjct: 130 LYPSCFDAN-AGLFE-ALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDVADLEAK 187
Query: 932 LQRSDPAVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGLYXXXXXXXX 1111
LQ + ++VA + SMDG + PL+++C +A ++GA+ FVD+ HA G
Sbjct: 188 LQEAQKHRLRLVATDGTFSMDGDIAPLQDICRLASQYGALVFVDDCHATGFLGATGRGTD 247
Query: 1112 XXXXVMPKMDIISGTLGKAF-GCVGGYIASTNSLVDTIRSYAAGFIFTTSLPPMVLAGAL 1288
VM ++ II+ TLGKA G GGY SLV +R A ++F+ SLPP V+ A
Sbjct: 248 ELLGVMDQVAIINSTLGKALGGASGGYTTGPGSLVSLLRQRARPYLFSNSLPPAVVGCAS 307
Query: 1289 ESVRILKSAEGRALRRQHQRNVKLMRQMLMDAGLPVIHCPSHIIPVRVSDAAKNTEICDE 1468
+++ +L E A+ + + R+ + AG + I PV + DA + + D+
Sbjct: 308 KALDLL--MENNAIVQSMAAKTQRFRRKMEAAGFTISGANHPICPVMLGDARLASCMADD 365
Query: 1469 LMSRYNIYVQAINYPTVPRG 1528
+ R I+V +YP VP+G
Sbjct: 366 MQKR-GIFVIGFSYPVVPKG 384
>ref|XP_003126081.1| PREDICTED: 2-amino-3-ketobutyrate coenzyme A ligase,
mitochondrial-like isoform 1 [Sus scrofa].
Length = 419
Score = 195 bits (495), Expect = 7e-50
Identities = 116/320 (36%), Positives = 174/320 (54%), Gaps = 1/320 (0%)
Frame = +2
Query: 572 WCSNDYLGMSRHPRVCGAVIDTLKQYGTGAGGTRNISGTSKFHVDLEQELADLHGKDAAL 751
+C+N+YLG+S HP V A + L+++G G R I GT H DLE ++A H ++ A+
Sbjct: 70 FCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKDLEAKIARFHQREDAI 129
Query: 752 LFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNSGVPKYIFRHNDVHHLREL 931
L+ SCF AN + LF A + P + SD NHAS+I GIR KY +RH DV L
Sbjct: 130 LYPSCFDAN-AGLFE-ALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDVADLEAK 187
Query: 932 LQRSDPAVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGLYXXXXXXXX 1111
LQ + ++VA + SMDG + PL+++C +A ++GA+ FVD+ HA G
Sbjct: 188 LQEAQKHRLRLVATDGTFSMDGDIAPLQDICRLASQYGALVFVDDCHATGFLGATGRGTD 247
Query: 1112 XXXXVMPKMDIISGTLGKAF-GCVGGYIASTNSLVDTIRSYAAGFIFTTSLPPMVLAGAL 1288
VM ++ II+ TLGKA G GGY SLV +R A ++F+ SLPP V+ A
Sbjct: 248 ELLGVMDQVAIINSTLGKALGGASGGYTTGPGSLVSLLRQRARPYLFSNSLPPAVVGCAS 307
Query: 1289 ESVRILKSAEGRALRRQHQRNVKLMRQMLMDAGLPVIHCPSHIIPVRVSDAAKNTEICDE 1468
+++ +L E A+ + + R+ + AG + I PV + DA + + D+
Sbjct: 308 KALDLL--MENNAIVQSMAAKTQRFRRKMEAAGFTISGANHPICPVMLGDARLASCMADD 365
Query: 1469 LMSRYNIYVQAINYPTVPRG 1528
+ R I+V +YP VP+G
Sbjct: 366 MQKR-GIFVIGFSYPVVPKG 384
>ref|XP_003134305.1| PREDICTED: serine palmitoyltransferase 3 [Sus scrofa].
Length = 548
Score = 148 bits (374), Expect = 8e-36
Identities = 108/369 (29%), Positives = 180/369 (48%), Gaps = 20/369 (5%)
Frame = +2
Query: 521 MADDYSDSLVSK----RQVSVWCSNDYLGMS-RHPRVCGAVIDTLKQYGTGAGGTRNISG 685
++DDY+ + S + V S ++LG++ ++ V D L+ YG G G TR G
Sbjct: 139 VSDDYNWTFRSTGRIIKDVINMGSYNFLGLAAKYDESMRTVKDVLETYGIGVGSTRQEMG 198
Query: 686 TSKFHVDLEQELADLHGKDAALLFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQG 865
T H +LE +A +AA++F F N + L GC I SD NHAS++ G
Sbjct: 199 TLDKHKELEDLVAKFLNVEAAMVFGMGFATNSMNIPALVGK--GCLILSDELNHASLVLG 256
Query: 866 IRNSGVPKYIFRHNDVHHLRELLQ--------RSDPAVPKI-VAFETVHSMDGAVCPLEE 1018
R SG IF+HN+V L +LL+ R+ A KI + E ++SM+G++ L +
Sbjct: 257 ARLSGATIRIFKHNNVQSLEKLLRDAIIYGQPRTRRAWKKILILVEGIYSMEGSIVYLPQ 316
Query: 1019 LCDVAHEFGAITFVDEVHAVGLYXXXXXXXXXXXXVMPK-MDIISGTLGKAFGCVGGYIA 1195
+ + ++ A ++DE H++G + P+ +D+ GT K+FG GGY+A
Sbjct: 317 IVALKKKYKAYLYIDEAHSIGSLGPTGRGVVEFFGMDPRDVDVCMGTFTKSFGASGGYLA 376
Query: 1196 STNSLVDTIRSYAAGFIFTTSLPPMVLAGALESVRILKSAEG--RALRRQHQ--RNVKLM 1363
LVD +R+++ + TS+ P V + S++++ +G + L+R Q +N +
Sbjct: 377 GRKDLVDYLRAHSHSAAYATSMSPPVAEQIIRSMKLIMGLDGTTQGLQRVQQLAKNTRYF 436
Query: 1364 RQMLMDAGLPVI-HCPSHIIPVRVSDAAKNTEICDELMSRYNIYVQAINYPTVPRGGRAA 1540
RQ L G + + S ++P+ + AK L++RY I V + +P P A
Sbjct: 437 RQRLSQLGFIIYGNEASPVVPLLLYMPAKVAAFARHLLNRYKIGVVVVGFPATPLAEARA 496
Query: 1541 ADCPHAPST 1567
C A T
Sbjct: 497 RFCISATHT 505
>ref|XP_001926625.3| PREDICTED: serine palmitoyltransferase 2, partial [Sus scrofa].
Length = 463
Score = 140 bits (352), Expect = 3e-33
Identities = 108/411 (26%), Positives = 194/411 (47%), Gaps = 25/411 (6%)
Frame = +2
Query: 410 VSTFQ-YDRFFEKKIDEKKNDHTYRVFKTV--------NRKAQCFPMADDYSDSLVSKRQ 562
VS +Q ++ F+ + + + D+ R +V R++ + + Y+ +++ +
Sbjct: 13 VSLYQDFENFYTRNLYMRIRDNWNRPICSVPGARVDIMERQSHDYNWSFKYTGNII--KD 70
Query: 563 VSVWCSNDYLGMSRHPRVCG-AVIDTLKQYGTGAGGTRNISGTSKFHVDLEQELADLHGK 739
V S +YLG +R+ C A L++YG G TR G H +LE+ +A G
Sbjct: 71 VINMGSYNYLGFARNTGACQEAAAKVLEEYGVGVCSTRQEIGNLDKHEELEKLVASFLGV 130
Query: 740 DAALLFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNSGVPKYIFRHNDVHH 919
+AA+ + F N + L GC I SD NHAS++ G R SG IF+HN++
Sbjct: 131 EAAMAYGMGFATNSMNIPALVSK--GCLILSDELNHASLVLGARLSGATIRIFKHNNMQS 188
Query: 920 LRELLQRS---------DPAVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVH 1072
L +LL+ + P ++ E ++SM+G++ L E+ + ++ A ++DE H
Sbjct: 189 LEKLLKDAIVYGQPRTRRPWKKILILVEGIYSMEGSIVRLPEVIALKKKYKAYLYLDEAH 248
Query: 1073 AVGLYXXXXXXXXXXXXVMPK-MDIISGTLGKAFGCVGGYIASTNSLVDTIRSYAAGFIF 1249
++G + P+ +DI+ GT K+FG GGYI L+D +R+++ ++
Sbjct: 249 SIGALGPTGRGVVDYFGLDPEDVDIMMGTFTKSFGASGGYIGGKKELIDYLRTHSHSAVY 308
Query: 1250 TTSLPPMVLAGALESVRILKSAEGRALRR----QHQRNVKLMRQMLMDAGLPVI-HCPSH 1414
TSL P V+ + S++ + +G L + Q N + R+ L + G + + S
Sbjct: 309 ATSLSPPVVEQIITSMKCIMGQDGTTLGKECIQQLAENTRYFRRRLKEMGFIIYGNEDSP 368
Query: 1415 IIPVRVSDAAKNTEICDELMSRYNIYVQAINYPTVPRGGRAAADCPHAPST 1567
++P+ + AK E++ R N+ V + +P P A C A T
Sbjct: 369 VVPLMLYMPAKIGAFGREMLKR-NVGVVVVGFPATPIIESRARFCLSAAHT 418
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 43,644,203
Number of extensions: 1248129
Number of successful extensions: 5367
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 5329
Number of HSP's successfully gapped: 12
Length of query: 560
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 456
Effective length of database: 8,754,644
Effective search space: 3992117664
Effective search space used: 3992117664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012735
(1681 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_065584.2| 5-aminolevulinate synthase, nonspecific, mitoch... 907 0.0
Alignment gi|NP_033783.1| 5-aminolevulinate synthase, erythroid-specific,... 597 e-171
Alignment gi|NP_001095916.1| 5-aminolevulinate synthase, erythroid-specif... 587 e-168
Alignment gi|NP_038875.3| 2-amino-3-ketobutyrate coenzyme A ligase, mitoc... 196 5e-50
Alignment gi|NP_001155184.1| 2-amino-3-ketobutyrate coenzyme A ligase, mi... 184 1e-46
Alignment gi|NP_035609.1| serine palmitoyltransferase 2 [Mus musculus]. 144 2e-34
Alignment gi|NP_780676.1| serine palmitoyltransferase 3 [Mus musculus]. 128 2e-29
Alignment gi|NP_033295.2| serine palmitoyltransferase 1 [Mus musculus]. 111 1e-24
>ref|NP_065584.2| 5-aminolevulinate synthase, nonspecific, mitochondrial precursor [Mus
musculus].
Length = 642
Score = 907 bits (2345), Expect = 0.0
Identities = 450/525 (85%), Positives = 483/525 (92%), Gaps = 2/525 (0%)
Frame = +2
Query: 5 KETPPANEKDKTAKAEVQQAPDGSQ--RTPDGTQLPTGHPSPASSQSTASKCPFLAAQMS 178
KETPPANEK+KTAKA VQQAPD SQ +TPDGTQLP+GHPSPA+SQ + SKCPFLAAQ+S
Sbjct: 59 KETPPANEKEKTAKAAVQQAPDESQMAQTPDGTQLPSGHPSPATSQGSGSKCPFLAAQLS 118
Query: 179 QGGSSVFRKASLELQEDVQEMHAVREEVAQTSVNPSVINVKTDGGEPSGLLKNFQDIMRK 358
Q GSSVFRKASLELQEDVQEMHAVR+E AQ+ V PS++NVKTDG +PS LLKNFQDIMRK
Sbjct: 119 QTGSSVFRKASLELQEDVQEMHAVRKEAAQSPVPPSLVNVKTDGEDPSRLLKNFQDIMRK 178
Query: 359 QRPEGVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRKAQCFPMADDYS 538
QRPE VSHLLQDNLPKSVSTFQYD FFEKKIDEKKNDHTYRVFKTVNR+AQ FPMADDY+
Sbjct: 179 QRPERVSHLLQDNLPKSVSTFQYDHFFEKKIDEKKNDHTYRVFKTVNRRAQIFPMADDYT 238
Query: 539 DSLVSKRQVSVWCSNDYLGMSRHPRVCGAVIDTLKQYGTGAGGTRNISGTSKFHVDLEQE 718
DSL++K+QVSVWCSNDYLGMSRHPRVCGAV++T+KQ+G GAGGTRNISGTSKFHV+LEQ
Sbjct: 239 DSLITKKQVSVWCSNDYLGMSRHPRVCGAVMETVKQHGAGAGGTRNISGTSKFHVELEQA 298
Query: 719 LADLHGKDAALLFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNSGVPKYIF 898
LADLHGKDAALLFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNS VPKYIF
Sbjct: 299 LADLHGKDAALLFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNSRVPKYIF 358
Query: 899 RHNDVHHLRELLQRSDPAVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAV 1078
RHNDV+HLRELLQRSDP+VPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAV
Sbjct: 359 RHNDVNHLRELLQRSDPSVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAV 418
Query: 1079 GLYXXXXXXXXXXXXVMPKMDIISGTLGKAFGCVGGYIASTNSLVDTIRSYAAGFIFTTS 1258
GLY VMPKMDIISGTLGKAFGCVGGYIAST+ L+DT+RSYAAGFIFTTS
Sbjct: 419 GLYGARGGGIGDRDGVMPKMDIISGTLGKAFGCVGGYIASTSLLIDTVRSYAAGFIFTTS 478
Query: 1259 LPPMVLAGALESVRILKSAEGRALRRQHQRNVKLMRQMLMDAGLPVIHCPSHIIPVRVSD 1438
LPPM+LAGALESVRILKS+EGRALRRQHQRNVKL+RQMLMDAGLPVIHCPSHIIPVRV+D
Sbjct: 479 LPPMLLAGALESVRILKSSEGRALRRQHQRNVKLLRQMLMDAGLPVIHCPSHIIPVRVAD 538
Query: 1439 AAKNTEICDELMSRYNIYVQAINYPTVPRGGRAAADCPHAPSTPR 1573
AAKNTEICDELM+R+NIYVQAINYPTVPRG P TP+
Sbjct: 539 AAKNTEICDELMTRHNIYVQAINYPTVPRGEELLRIAPTPHHTPQ 583
Score = 49.3 bits (116), Expect = 9e-06
Identities = 25/51 (49%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +1
Query: 1522 PGGKSCCGLPPRPLHPPEMMTNFVDNLLAAWKQVGLELSTFLS-*VNFCRR 1671
P G+ + P P H P+MM FV+ LL WK+VGLEL S NFCRR
Sbjct: 566 PRGEELLRIAPTPHHTPQMMNFFVEKLLVTWKRVGLELKPHSSAECNFCRR 616
>ref|NP_033783.1| 5-aminolevulinate synthase, erythroid-specific, mitochondrial isoform
a [Mus musculus].
Length = 587
Score = 597 bits (1539), Expect = e-171
Identities = 310/504 (61%), Positives = 374/504 (74%), Gaps = 3/504 (0%)
Frame = +2
Query: 59 QAPDGSQRTPDGTQLPTGHPSPASSQSTASKCPFLAAQMSQGGSSVFRKASLELQEDVQE 238
Q P SQ T+ PS A S CPF+ +++ S + ++A+ E+QEDV+
Sbjct: 44 QGPTCSQIHLKATKAGGDSPSWAKSH-----CPFMLSELQDRKSKIVQRAAPEVQEDVKT 98
Query: 239 MHAVREEVAQTSVNPSVINVKTDGGEPSGLLKNFQDIMRKQRPEGVSHLLQDNLPKSVST 418
+ ++ T D S +FQ+ +Q V HL+Q+N+ S
Sbjct: 99 F---KTDLLSTM----------DSTTRSHSFPSFQE--PEQTEGAVPHLIQNNMTGS-QA 142
Query: 419 FQYDRFFEKKIDEKKNDHTYRVFKTVNRKAQCFPMADDYSDSLVSKRQVSVWCSNDYLGM 598
F YD+FF KI EKK DHTYRVFKTVNR A +P A +S++ ++ + VSVWCSNDYLG+
Sbjct: 143 FGYDQFFRDKIMEKKQDHTYRVFKTVNRWANAYPFAQHFSEASMASKDVSVWCSNDYLGI 202
Query: 599 SRHPRVCGAVIDTLKQYGTGAGGTRNISGTSKFHVDLEQELADLHGKDAALLFSSCFVAN 778
SRHPRV A+ +TLK +G GAGGTRNISGTSKFHV+LEQELA+LH KD+ALLFSSCFVAN
Sbjct: 203 SRHPRVLQAIEETLKNHGAGAGGTRNISGTSKFHVELEQELAELHQKDSALLFSSCFVAN 262
Query: 779 DSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNSGVPKYIFRHNDVHHLRELLQRSDPAVP 958
DSTLFTLAK++PGCEIYSD+GNHASMIQGIRNSG K++FRHND HL++LL++SDP P
Sbjct: 263 DSTLFTLAKLLPGCEIYSDAGNHASMIQGIRNSGAAKFVFRHNDPGHLKKLLEKSDPKTP 322
Query: 959 KIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGLYXXXXXXXXXXXXVMPKM 1138
KIVAFETVHSMDGA+CPLEELCDVAH++GA+TFVDEVHAVGLY +M K+
Sbjct: 323 KIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVHAVGLYGARGAGIGERDGIMHKL 382
Query: 1139 DIISGTLGKAFGCVGGYIASTNSLVDTIRSYAAGFIFTTSLPPMVLAGALESVRILKSAE 1318
DIISGTLGKAFGCVGGYIAST LVD +RSYAAGFIFTTSLPPMVL+GALESVR+LK E
Sbjct: 383 DIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEE 442
Query: 1319 GRALRRQHQRNVKLMRQMLMDAGLPVIHCPSHIIPVRVSDAAKNTEICDELMSRYNIYVQ 1498
G+ALRR HQRNVK MRQ+LMD G PVI CPSHIIP+RV +AA N++ICD L+S+++IYVQ
Sbjct: 443 GQALRRAHQRNVKHMRQLLMDRGFPVIPCPSHIIPIRVGNAALNSKICDLLLSKHSIYVQ 502
Query: 1499 AINYPTVPRGG---RAAADCPHAP 1561
AINYPTVPRG R A H+P
Sbjct: 503 AINYPTVPRGEELLRLAPSPHHSP 526
>ref|NP_001095916.1| 5-aminolevulinate synthase, erythroid-specific, mitochondrial isoform
b [Mus musculus].
Length = 572
Score = 587 bits (1514), Expect = e-168
Identities = 303/478 (63%), Positives = 364/478 (76%), Gaps = 7/478 (1%)
Frame = +2
Query: 149 KCPFLAAQMSQGGSSVFRKASLELQEDVQEMHAVREEVAQTSVNPSVINVKTD---GGEP 319
+CP LA Q S + KA+ + ++Q+ + + A V V KTD +
Sbjct: 37 RCPILATQ-GPTCSQIHLKAT-KAGGELQDRKSKIVQRAAPEVQEDVKTFKTDLLSTMDS 94
Query: 320 SGLLKNFQDIMRKQRPEG-VSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTV 496
+ +F ++ EG V HL+Q+N+ S F YD+FF KI EKK DHTYRVFKTV
Sbjct: 95 TTRSHSFPSFQEPEQTEGAVPHLIQNNMTGS-QAFGYDQFFRDKIMEKKQDHTYRVFKTV 153
Query: 497 NRKAQCFPMADDYSDSLVSKRQVSVWCSNDYLGMSRHPRVCGAVIDTLKQYGTGAGGTRN 676
NR A +P A +S++ ++ + VSVWCSNDYLG+SRHPRV A+ +TLK +G GAGGTRN
Sbjct: 154 NRWANAYPFAQHFSEASMASKDVSVWCSNDYLGISRHPRVLQAIEETLKNHGAGAGGTRN 213
Query: 677 ISGTSKFHVDLEQELADLHGKDAALLFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASM 856
ISGTSKFHV+LEQELA+LH KD+ALLFSSCFVANDSTLFTLAK++PGCEIYSD+GNHASM
Sbjct: 214 ISGTSKFHVELEQELAELHQKDSALLFSSCFVANDSTLFTLAKLLPGCEIYSDAGNHASM 273
Query: 857 IQGIRNSGVPKYIFRHNDVHHLRELLQRSDPAVPKIVAFETVHSMDGAVCPLEELCDVAH 1036
IQGIRNSG K++FRHND HL++LL++SDP PKIVAFETVHSMDGA+CPLEELCDVAH
Sbjct: 274 IQGIRNSGAAKFVFRHNDPGHLKKLLEKSDPKTPKIVAFETVHSMDGAICPLEELCDVAH 333
Query: 1037 EFGAITFVDEVHAVGLYXXXXXXXXXXXXVMPKMDIISGTLGKAFGCVGGYIASTNSLVD 1216
++GA+TFVDEVHAVGLY +M K+DIISGTLGKAFGCVGGYIAST LVD
Sbjct: 334 QYGALTFVDEVHAVGLYGARGAGIGERDGIMHKLDIISGTLGKAFGCVGGYIASTRDLVD 393
Query: 1217 TIRSYAAGFIFTTSLPPMVLAGALESVRILKSAEGRALRRQHQRNVKLMRQMLMDAGLPV 1396
+RSYAAGFIFTTSLPPMVL+GALESVR+LK EG+ALRR HQRNVK MRQ+LMD G PV
Sbjct: 394 MVRSYAAGFIFTTSLPPMVLSGALESVRLLKGEEGQALRRAHQRNVKHMRQLLMDRGFPV 453
Query: 1397 IHCPSHIIPVRVSDAAKNTEICDELMSRYNIYVQAINYPTVPRGG---RAAADCPHAP 1561
I CPSHIIP+RV +AA N++ICD L+S+++IYVQAINYPTVPRG R A H+P
Sbjct: 454 IPCPSHIIPIRVGNAALNSKICDLLLSKHSIYVQAINYPTVPRGEELLRLAPSPHHSP 511
>ref|NP_038875.3| 2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial isoform a
[Mus musculus].
Length = 416
Score = 196 bits (498), Expect = 5e-50
Identities = 114/320 (35%), Positives = 177/320 (55%), Gaps = 1/320 (0%)
Frame = +2
Query: 572 WCSNDYLGMSRHPRVCGAVIDTLKQYGTGAGGTRNISGTSKFHVDLEQELADLHGKDAAL 751
+C+N+YLG+S HP V A + TL+++G G TR I GT H +LE ++A H ++ A+
Sbjct: 67 FCANNYLGLSSHPAVIQAGLQTLEEFGAGLSSTRFICGTQSIHKNLEAKIAHFHQREDAI 126
Query: 752 LFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNSGVPKYIFRHNDVHHLREL 931
L+ SCF AN + LF A + P + SD NHAS+I GIR KY +RH D+ L
Sbjct: 127 LYPSCFDAN-AGLFE-ALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDMADLEAK 184
Query: 932 LQRSDPAVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGLYXXXXXXXX 1111
L+ + ++VA + SMDG + PL+++C +A ++GA+ FVDE HA G
Sbjct: 185 LKEAQKHRLRLVATDGAFSMDGDIAPLQDICRLAAQYGALVFVDECHATGFLGPTGRGTD 244
Query: 1112 XXXXVMPKMDIISGTLGKAF-GCVGGYIASTNSLVDTIRSYAAGFIFTTSLPPMVLAGAL 1288
VM ++ II+ TLGKA G GGY LV +R + ++F+ SLPP V+ A
Sbjct: 245 ELLGVMDQVTIINSTLGKALGGASGGYTTGPEPLVSLLRQRSRPYLFSNSLPPAVVGCAS 304
Query: 1289 ESVRILKSAEGRALRRQHQRNVKLMRQMLMDAGLPVIHCPSHIIPVRVSDAAKNTEICDE 1468
+++ +L E A+ + + R + AG V I PV + DA ++++ D+
Sbjct: 305 KALDLL--MESNAIIQSMAAKTRRFRSKMEAAGFTVSGADHPICPVMLGDARLSSQMADD 362
Query: 1469 LMSRYNIYVQAINYPTVPRG 1528
++ + I+V +YP VP+G
Sbjct: 363 MLKK-GIFVIGFSYPVVPKG 381
>ref|NP_001155184.1| 2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial isoform b
[Mus musculus].
Length = 382
Score = 184 bits (468), Expect = 1e-46
Identities = 107/304 (35%), Positives = 167/304 (54%), Gaps = 1/304 (0%)
Frame = +2
Query: 572 WCSNDYLGMSRHPRVCGAVIDTLKQYGTGAGGTRNISGTSKFHVDLEQELADLHGKDAAL 751
+C+N+YLG+S HP V A + TL+++G G TR I GT H +LE ++A H ++ A+
Sbjct: 67 FCANNYLGLSSHPAVIQAGLQTLEEFGAGLSSTRFICGTQSIHKNLEAKIAHFHQREDAI 126
Query: 752 LFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNSGVPKYIFRHNDVHHLREL 931
L+ SCF AN + LF A + P + SD NHAS+I GIR KY +RH D+ L
Sbjct: 127 LYPSCFDAN-AGLFE-ALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDMADLEAK 184
Query: 932 LQRSDPAVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGLYXXXXXXXX 1111
L+ + ++VA + SMDG + PL+++C +A ++GA+ FVDE HA G
Sbjct: 185 LKEAQKHRLRLVATDGAFSMDGDIAPLQDICRLAAQYGALVFVDECHATGFLGPTGRGTD 244
Query: 1112 XXXXVMPKMDIISGTLGKAF-GCVGGYIASTNSLVDTIRSYAAGFIFTTSLPPMVLAGAL 1288
VM ++ II+ TLGKA G GGY LV +R + ++F+ SLPP V+ A
Sbjct: 245 ELLGVMDQVTIINSTLGKALGGASGGYTTGPEPLVSLLRQRSRPYLFSNSLPPAVVGCAS 304
Query: 1289 ESVRILKSAEGRALRRQHQRNVKLMRQMLMDAGLPVIHCPSHIIPVRVSDAAKNTEICDE 1468
+++ +L E A+ + + R + AG V I PV + DA ++++ D+
Sbjct: 305 KALDLL--MESNAIIQSMAAKTRRFRSKMEAAGFTVSGADHPICPVMLGDARLSSQMADD 362
Query: 1469 LMSR 1480
++ +
Sbjct: 363 MLKK 366
>ref|NP_035609.1| serine palmitoyltransferase 2 [Mus musculus].
Length = 560
Score = 144 bits (364), Expect = 2e-34
Identities = 115/435 (26%), Positives = 205/435 (47%), Gaps = 26/435 (5%)
Frame = +2
Query: 341 QDIMRKQRPEGVSHLLQDNLPKS-VSTFQ-YDRFFEKKIDEKKNDHTYRVFKTV------ 496
+D +R R E H + K VS +Q ++ F+ + + + D+ R +V
Sbjct: 86 RDFLRHWRIEKCHHATEREEQKDFVSLYQDFENFYTRNLYMRIRDNWNRPICSVPGAKVD 145
Query: 497 --NRKAQCFPMADDYSDSLVSKRQVSVWCSNDYLGMSRHPRVCG-AVIDTLKQYGTGAGG 667
RK+ + + Y+ +++ + V S +YLG +R+ C A + LK+YG G
Sbjct: 146 IMERKSHDYNWSFKYTGNII--KGVINMGSYNYLGFARNTGSCQEAAAEVLKEYGAGVCS 203
Query: 668 TRNISGTSKFHVDLEQELADLHGKDAALLFSSCFVANDSTLFTLAKMMPGCEIYSDSGNH 847
TR G H +LE+ +A G +AA+ + F N + L GC I SD NH
Sbjct: 204 TRQEIGNLDKHEELEKLVARFLGVEAAMTYGMGFATNSMNIPALVGK--GCLILSDELNH 261
Query: 848 ASMIQGIRNSGVPKYIFRHNDVHHLRELLQRS---------DPAVPKIVAFETVHSMDGA 1000
AS++ G R SG IF+HN++ L +LL+ + P ++ E ++SM+G+
Sbjct: 262 ASLVLGARLSGATIRIFKHNNMQSLEKLLKDAIVYGQPRTRRPWKKILILVEGIYSMEGS 321
Query: 1001 VCPLEELCDVAHEFGAITFVDEVHAVGLYXXXXXXXXXXXXVMPK-MDIISGTLGKAFGC 1177
+ L E+ + ++ A ++DE H++G + P+ +D++ GT K+FG
Sbjct: 322 IVRLPEVIALKKKYKAYLYLDEAHSIGALGPSGRGVVDYFGLDPEDVDVMMGTFTKSFGA 381
Query: 1178 VGGYIASTNSLVDTIRSYAAGFIFTTSLPPMVLAGALESVRILKSAEGRALRR----QHQ 1345
GGYI L+D +R+++ ++ TS+ P V+ + S++ + +G +L + Q
Sbjct: 382 SGGYIGGKKELIDYLRTHSHSAVYATSMSPPVMEQIITSMKCIMGQDGTSLGKECIQQLA 441
Query: 1346 RNVKLMRQMLMDAGLPVI-HCPSHIIPVRVSDAAKNTEICDELMSRYNIYVQAINYPTVP 1522
N + R+ L + G + + S ++P+ + AK E++ R NI V + +P P
Sbjct: 442 ENTRYFRRRLKEMGFIIYGNEDSPVVPLMLYMPAKIGAFGREMLKR-NIGVVVVGFPATP 500
Query: 1523 RGGRAAADCPHAPST 1567
A C A T
Sbjct: 501 IIESRARFCLSAAHT 515
>ref|NP_780676.1| serine palmitoyltransferase 3 [Mus musculus].
Length = 563
Score = 128 bits (321), Expect = 2e-29
Identities = 97/335 (28%), Positives = 162/335 (48%), Gaps = 18/335 (5%)
Frame = +2
Query: 578 SNDYLGMS-RHPRVCGAVIDTLKQYGTGAGGTRNISGTSKFHVDLEQELADLHGKDAALL 754
S +YLG++ ++ V DTL++YG G TRN GT H +LE +A+ +A +
Sbjct: 167 SYNYLGLAGKYDDSMVRVKDTLEKYGVGVASTRNEMGTLDIHKELEDLMAEFLNVEAVMS 226
Query: 755 FSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNSGVPKYIFRHNDVHHLRELL 934
F F N + GC I SD NH S+I G R SG F+HN+ +L +LL
Sbjct: 227 FGMGFATNAMNIPVFVGK--GCLILSDEFNHTSVILGSRLSGAVIRPFKHNNAENLEKLL 284
Query: 935 Q----RSDPAVPK-----IVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGLY 1087
+ R P + ++ E V+SM+G++ L ++ + ++ A ++DE H++G
Sbjct: 285 REAIIRGQPGTGRAWKKILIVVEGVYSMEGSIVNLAQIVALKKKYKAYLYIDEAHSIGCT 344
Query: 1088 XXXXXXXXXXXXVMPK-MDIISGTLGKAFGCVGGYIASTNSLVDTIRSYAAGFIFTTSLP 1264
+ P+ +D+ GT K+F GGYI +VD +R + + TS+
Sbjct: 345 GPTGRGVRELFGLDPEDIDVYMGTFTKSFSGSGGYIGGKKEIVDYLRMQSHSTTYATSMS 404
Query: 1265 PMVLAGALESVRILKSAEGR--ALRR--QHQRNVKLMRQMLMDAGLPVI-HCPSHIIPVR 1429
P+V A + S++I EG + R Q + N+K R+ L + G + + S +IPV
Sbjct: 405 PVVAAQLIRSLKITMGYEGNIGGMERIQQLKENIKYFRRRLKEMGFIIYGNDFSPVIPVL 464
Query: 1430 VSDAAKNTEICDELMSRYNIYVQAINYP--TVPRG 1528
+ AK + L+ + I V + +P ++P G
Sbjct: 465 LYMPAKVSAFSRFLLKK-KISVVVVGFPATSLPEG 498
>ref|NP_033295.2| serine palmitoyltransferase 1 [Mus musculus].
Length = 473
Score = 111 bits (278), Expect = 1e-24
Identities = 73/266 (27%), Positives = 131/266 (49%), Gaps = 11/266 (4%)
Frame = +2
Query: 545 LVSKRQVSVWCSNDYLGMSRHPRVCGAVIDTLKQYGTGAGGTRNISGTSKFHVDLEQELA 724
+V+ ++ + S ++LG+ +PRV +LK+YG G G R GT H+DLE+ LA
Sbjct: 94 VVNGKECVNFASFNFLGLLANPRVKATAFSSLKKYGVGTCGPRGFYGTFDVHLDLEERLA 153
Query: 725 DLHGKDAALLFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNSGVPKYIFRH 904
+ A+++S F S + +K G I+ DS ++ +G++ S +F+H
Sbjct: 154 KFMKTEEAIIYSYGFSTIASAIPAYSKR--GDIIFVDSAACFAIQKGLQASRSDIKLFKH 211
Query: 905 NDVHHLRELLQ----------RSDPAVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAIT 1054
NDV L LL+ R + + E ++ G +CPL EL + +++ A
Sbjct: 212 NDVADLERLLKEQEIEDQKNPRKARVTRRFIVVEGLYMNTGTICPLPELVKLKYKYKARI 271
Query: 1055 FVDEVHAVGLYXXXXXXXXXXXXV-MPKMDIISGTLGKAFGCVGGYIASTNSLVDTIRSY 1231
F++E + G+ + + +D+IS + A VGG+ + +VD R
Sbjct: 272 FLEESLSFGVLGEHGRGVTEHYGISIDDIDLISANMENALASVGGFCCGRSFVVDHQRLS 331
Query: 1232 AAGFIFTTSLPPMVLAGALESVRILK 1309
G+ F+ SLPP++ A A+E++ I++
Sbjct: 332 GQGYCFSASLPPLLAAAAIEALNIME 357
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 58,646,673
Number of extensions: 1634836
Number of successful extensions: 6546
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 6506
Number of HSP's successfully gapped: 9
Length of query: 560
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 453
Effective length of database: 12,403,707
Effective search space: 5618879271
Effective search space used: 5618879271
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012735
(1681 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_954635.1| 5-aminolevulinate synthase, nonspecific, mitoch... 924 0.0
Alignment gi|NP_000679.1| 5-aminolevulinate synthase, nonspecific, mitoch... 924 0.0
Alignment gi|NP_000023.2| 5-aminolevulinate synthase, erythroid-specific,... 603 e-172
Alignment gi|NP_001033057.1| 5-aminolevulinate synthase, erythroid-specif... 576 e-164
Alignment gi|NP_001033056.1| 5-aminolevulinate synthase, erythroid-specif... 576 e-164
Alignment gi|NP_001165161.1| 2-amino-3-ketobutyrate coenzyme A ligase, mi... 188 1e-47
Alignment gi|NP_055106.1| 2-amino-3-ketobutyrate coenzyme A ligase, mitoc... 188 1e-47
Alignment gi|NP_004854.1| serine palmitoyltransferase 2 [Homo sapiens]. 140 3e-33
Alignment gi|NP_060797.2| serine palmitoyltransferase 3 [Homo sapiens]. 135 1e-31
Alignment gi|NP_006406.1| serine palmitoyltransferase 1 isoform a [Homo s... 110 5e-24
>ref|NP_954635.1| 5-aminolevulinate synthase, nonspecific, mitochondrial precursor
[Homo sapiens].
Length = 640
Score = 924 bits (2387), Expect = 0.0
Identities = 455/523 (86%), Positives = 486/523 (92%)
Frame = +2
Query: 5 KETPPANEKDKTAKAEVQQAPDGSQRTPDGTQLPTGHPSPASSQSTASKCPFLAAQMSQG 184
KETPPA+EKDKTAKA+VQQ PDGSQ++PDGTQLP+GHP PA+SQ TASKCPFLAAQM+Q
Sbjct: 59 KETPPASEKDKTAKAKVQQTPDGSQQSPDGTQLPSGHPLPATSQGTASKCPFLAAQMNQR 118
Query: 185 GSSVFRKASLELQEDVQEMHAVREEVAQTSVNPSVINVKTDGGEPSGLLKNFQDIMRKQR 364
GSSVF KASLELQEDVQEM+AVR+EVA+TS PSV++VKTDGG+PSGLLKNFQDIM+KQR
Sbjct: 119 GSSVFCKASLELQEDVQEMNAVRKEVAETSAGPSVVSVKTDGGDPSGLLKNFQDIMQKQR 178
Query: 365 PEGVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRKAQCFPMADDYSDS 544
PE VSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNR+A FPMADDYSDS
Sbjct: 179 PERVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRRAHIFPMADDYSDS 238
Query: 545 LVSKRQVSVWCSNDYLGMSRHPRVCGAVIDTLKQYGTGAGGTRNISGTSKFHVDLEQELA 724
L++K+QVSVWCSNDYLGMSRHPRVCGAV+DTLKQ+G GAGGTRNISGTSKFHVDLE+ELA
Sbjct: 239 LITKKQVSVWCSNDYLGMSRHPRVCGAVMDTLKQHGAGAGGTRNISGTSKFHVDLERELA 298
Query: 725 DLHGKDAALLFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNSGVPKYIFRH 904
DLHGKDAALLFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNS VPKYIFRH
Sbjct: 299 DLHGKDAALLFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNSRVPKYIFRH 358
Query: 905 NDVHHLRELLQRSDPAVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGL 1084
NDV HLRELLQRSDP+VPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGL
Sbjct: 359 NDVSHLRELLQRSDPSVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGL 418
Query: 1085 YXXXXXXXXXXXXVMPKMDIISGTLGKAFGCVGGYIASTNSLVDTIRSYAAGFIFTTSLP 1264
Y VMPKMDIISGTLGKAFGCVGGYIAST+SL+DT+RSYAAGFIFTTSLP
Sbjct: 419 YGARGGGIGDRDGVMPKMDIISGTLGKAFGCVGGYIASTSSLIDTVRSYAAGFIFTTSLP 478
Query: 1265 PMVLAGALESVRILKSAEGRALRRQHQRNVKLMRQMLMDAGLPVIHCPSHIIPVRVSDAA 1444
PM+LAGALESVRILKSAEGR LRRQHQRNVKLMRQMLMDAGLPV+HCPSHIIPVRV+DAA
Sbjct: 479 PMLLAGALESVRILKSAEGRVLRRQHQRNVKLMRQMLMDAGLPVVHCPSHIIPVRVADAA 538
Query: 1445 KNTEICDELMSRYNIYVQAINYPTVPRGGRAAADCPHAPSTPR 1573
KNTE+CDELMSR+NIYVQAINYPTVPRG P TP+
Sbjct: 539 KNTEVCDELMSRHNIYVQAINYPTVPRGEELLRIAPTPHHTPQ 581
Score = 52.4 bits (124), Expect = 1e-06
Identities = 26/51 (50%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = +1
Query: 1522 PGGKSCCGLPPRPLHPPEMMTNFVDNLLAAWKQVGLELSTFLS-*VNFCRR 1671
P G+ + P P H P+MM F++NLL WKQVGLEL S NFCRR
Sbjct: 564 PRGEELLRIAPTPHHTPQMMNYFLENLLVTWKQVGLELKPHSSAECNFCRR 614
>ref|NP_000679.1| 5-aminolevulinate synthase, nonspecific, mitochondrial precursor
[Homo sapiens].
Length = 640
Score = 924 bits (2387), Expect = 0.0
Identities = 455/523 (86%), Positives = 486/523 (92%)
Frame = +2
Query: 5 KETPPANEKDKTAKAEVQQAPDGSQRTPDGTQLPTGHPSPASSQSTASKCPFLAAQMSQG 184
KETPPA+EKDKTAKA+VQQ PDGSQ++PDGTQLP+GHP PA+SQ TASKCPFLAAQM+Q
Sbjct: 59 KETPPASEKDKTAKAKVQQTPDGSQQSPDGTQLPSGHPLPATSQGTASKCPFLAAQMNQR 118
Query: 185 GSSVFRKASLELQEDVQEMHAVREEVAQTSVNPSVINVKTDGGEPSGLLKNFQDIMRKQR 364
GSSVF KASLELQEDVQEM+AVR+EVA+TS PSV++VKTDGG+PSGLLKNFQDIM+KQR
Sbjct: 119 GSSVFCKASLELQEDVQEMNAVRKEVAETSAGPSVVSVKTDGGDPSGLLKNFQDIMQKQR 178
Query: 365 PEGVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRKAQCFPMADDYSDS 544
PE VSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNR+A FPMADDYSDS
Sbjct: 179 PERVSHLLQDNLPKSVSTFQYDRFFEKKIDEKKNDHTYRVFKTVNRRAHIFPMADDYSDS 238
Query: 545 LVSKRQVSVWCSNDYLGMSRHPRVCGAVIDTLKQYGTGAGGTRNISGTSKFHVDLEQELA 724
L++K+QVSVWCSNDYLGMSRHPRVCGAV+DTLKQ+G GAGGTRNISGTSKFHVDLE+ELA
Sbjct: 239 LITKKQVSVWCSNDYLGMSRHPRVCGAVMDTLKQHGAGAGGTRNISGTSKFHVDLERELA 298
Query: 725 DLHGKDAALLFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNSGVPKYIFRH 904
DLHGKDAALLFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNS VPKYIFRH
Sbjct: 299 DLHGKDAALLFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNSRVPKYIFRH 358
Query: 905 NDVHHLRELLQRSDPAVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGL 1084
NDV HLRELLQRSDP+VPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGL
Sbjct: 359 NDVSHLRELLQRSDPSVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGL 418
Query: 1085 YXXXXXXXXXXXXVMPKMDIISGTLGKAFGCVGGYIASTNSLVDTIRSYAAGFIFTTSLP 1264
Y VMPKMDIISGTLGKAFGCVGGYIAST+SL+DT+RSYAAGFIFTTSLP
Sbjct: 419 YGARGGGIGDRDGVMPKMDIISGTLGKAFGCVGGYIASTSSLIDTVRSYAAGFIFTTSLP 478
Query: 1265 PMVLAGALESVRILKSAEGRALRRQHQRNVKLMRQMLMDAGLPVIHCPSHIIPVRVSDAA 1444
PM+LAGALESVRILKSAEGR LRRQHQRNVKLMRQMLMDAGLPV+HCPSHIIPVRV+DAA
Sbjct: 479 PMLLAGALESVRILKSAEGRVLRRQHQRNVKLMRQMLMDAGLPVVHCPSHIIPVRVADAA 538
Query: 1445 KNTEICDELMSRYNIYVQAINYPTVPRGGRAAADCPHAPSTPR 1573
KNTE+CDELMSR+NIYVQAINYPTVPRG P TP+
Sbjct: 539 KNTEVCDELMSRHNIYVQAINYPTVPRGEELLRIAPTPHHTPQ 581
Score = 52.4 bits (124), Expect = 1e-06
Identities = 26/51 (50%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = +1
Query: 1522 PGGKSCCGLPPRPLHPPEMMTNFVDNLLAAWKQVGLELSTFLS-*VNFCRR 1671
P G+ + P P H P+MM F++NLL WKQVGLEL S NFCRR
Sbjct: 564 PRGEELLRIAPTPHHTPQMMNYFLENLLVTWKQVGLELKPHSSAECNFCRR 614
>ref|NP_000023.2| 5-aminolevulinate synthase, erythroid-specific, mitochondrial isoform
a precursor [Homo sapiens].
Length = 587
Score = 603 bits (1556), Expect = e-172
Identities = 310/505 (61%), Positives = 381/505 (75%), Gaps = 4/505 (0%)
Frame = +2
Query: 59 QAPDGSQRTPDGTQLPTGHPSPASSQSTASKCPFLAAQMSQGGSSVFRKASLELQEDVQE 238
Q P+ SQ T+ PS A CPF+ +++ G S + +KA+ E+QEDV+
Sbjct: 44 QGPNCSQIHLKATKAGGDSPSWAKGH-----CPFMLSELQDGKSKIVQKAAPEVQEDVKA 98
Query: 239 MHAVREEVAQTSVNPSVINVKTDGGEPSGLLKNFQDIMRKQRPEG-VSHLLQDNLPKSVS 415
+T + S+++V L K F +++ G V+HL+Q+N+P +
Sbjct: 99 F--------KTDLPSSLVSVS--------LRKPFSGPQEQEQISGKVTHLIQNNMPGNY- 141
Query: 416 TFQYDRFFEKKIDEKKNDHTYRVFKTVNRKAQCFPMADDYSDSLVSKRQVSVWCSNDYLG 595
F YD+FF KI EKK DHTYRVFKTVNR A +P A +S++ V+ + VSVWCSNDYLG
Sbjct: 142 VFSYDQFFRDKIMEKKQDHTYRVFKTVNRWADAYPFAQHFSEASVASKDVSVWCSNDYLG 201
Query: 596 MSRHPRVCGAVIDTLKQYGTGAGGTRNISGTSKFHVDLEQELADLHGKDAALLFSSCFVA 775
MSRHP+V A +TL+++G GAGGTRNISGTSKFHV+LEQELA+LH KD+ALLFSSCFVA
Sbjct: 202 MSRHPQVLQATQETLQRHGAGAGGTRNISGTSKFHVELEQELAELHQKDSALLFSSCFVA 261
Query: 776 NDSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNSGVPKYIFRHNDVHHLRELLQRSDPAV 955
NDSTLFTLAK++PGCEIYSD+GNHASMIQGIRNSG K++FRHND HL++LL++S+P +
Sbjct: 262 NDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAAKFVFRHNDPDHLKKLLEKSNPKI 321
Query: 956 PKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGLYXXXXXXXXXXXXVMPK 1135
PKIVAFETVHSMDGA+CPLEELCDV+H++GA+TFVDEVHAVGLY +M K
Sbjct: 322 PKIVAFETVHSMDGAICPLEELCDVSHQYGALTFVDEVHAVGLYGSRGAGIGERDGIMHK 381
Query: 1136 MDIISGTLGKAFGCVGGYIASTNSLVDTIRSYAAGFIFTTSLPPMVLAGALESVRILKSA 1315
+DIISGTLGKAFGCVGGYIAST LVD +RSYAAGFIFTTSLPPMVL+GALESVR+LK
Sbjct: 382 IDIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRLLKGE 441
Query: 1316 EGRALRRQHQRNVKLMRQMLMDAGLPVIHCPSHIIPVRVSDAAKNTEICDELMSRYNIYV 1495
EG+ALRR HQRNVK MRQ+LMD GLPVI CPSHIIP+RV +AA N+++CD L+S++ IYV
Sbjct: 442 EGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSKLCDLLLSKHGIYV 501
Query: 1496 QAINYPTVPRGG---RAAADCPHAP 1561
QAINYPTVPRG R A H+P
Sbjct: 502 QAINYPTVPRGEELLRLAPSPHHSP 526
>ref|NP_001033057.1| 5-aminolevulinate synthase, erythroid-specific, mitochondrial isoform
c precursor [Homo sapiens].
Length = 574
Score = 576 bits (1485), Expect = e-164
Identities = 292/449 (65%), Positives = 348/449 (77%), Gaps = 15/449 (3%)
Frame = +2
Query: 260 VAQTSVNPSVINVKTD--GGEPSGLLKNFQDIMRKQRPEGVSHLLQDNLP------KSVS 415
+A N S I++K GG+ K M + +G S ++Q P K+
Sbjct: 65 LATQGPNCSQIHLKATKAGGDSPSWAKGHCPFMLSELQDGKSKIVQKAAPEVQEDVKAFK 124
Query: 416 T----FQYDRFFEKKIDEKKNDHTYRVFKTVNRKAQCFPMADDYSDSLVSKRQVSVWCSN 583
T F YD+FF KI EKK DHTYRVFKTVNR A +P A +S++ V+ + VSVWCSN
Sbjct: 125 TGNYVFSYDQFFRDKIMEKKQDHTYRVFKTVNRWADAYPFAQHFSEASVASKDVSVWCSN 184
Query: 584 DYLGMSRHPRVCGAVIDTLKQYGTGAGGTRNISGTSKFHVDLEQELADLHGKDAALLFSS 763
DYLGMSRHP+V A +TL+++G GAGGTRNISGTSKFHV+LEQELA+LH KD+ALLFSS
Sbjct: 185 DYLGMSRHPQVLQATQETLQRHGAGAGGTRNISGTSKFHVELEQELAELHQKDSALLFSS 244
Query: 764 CFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNSGVPKYIFRHNDVHHLRELLQRS 943
CFVANDSTLFTLAK++PGCEIYSD+GNHASMIQGIRNSG K++FRHND HL++LL++S
Sbjct: 245 CFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAAKFVFRHNDPDHLKKLLEKS 304
Query: 944 DPAVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGLYXXXXXXXXXXXX 1123
+P +PKIVAFETVHSMDGA+CPLEELCDV+H++GA+TFVDEVHAVGLY
Sbjct: 305 NPKIPKIVAFETVHSMDGAICPLEELCDVSHQYGALTFVDEVHAVGLYGSRGAGIGERDG 364
Query: 1124 VMPKMDIISGTLGKAFGCVGGYIASTNSLVDTIRSYAAGFIFTTSLPPMVLAGALESVRI 1303
+M K+DIISGTLGKAFGCVGGYIAST LVD +RSYAAGFIFTTSLPPMVL+GALESVR+
Sbjct: 365 IMHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRL 424
Query: 1304 LKSAEGRALRRQHQRNVKLMRQMLMDAGLPVIHCPSHIIPVRVSDAAKNTEICDELMSRY 1483
LK EG+ALRR HQRNVK MRQ+LMD GLPVI CPSHIIP+RV +AA N+++CD L+S++
Sbjct: 425 LKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSKLCDLLLSKH 484
Query: 1484 NIYVQAINYPTVPRGG---RAAADCPHAP 1561
IYVQAINYPTVPRG R A H+P
Sbjct: 485 GIYVQAINYPTVPRGEELLRLAPSPHHSP 513
>ref|NP_001033056.1| 5-aminolevulinate synthase, erythroid-specific, mitochondrial isoform
b precursor [Homo sapiens].
Length = 550
Score = 576 bits (1485), Expect = e-164
Identities = 292/449 (65%), Positives = 348/449 (77%), Gaps = 15/449 (3%)
Frame = +2
Query: 260 VAQTSVNPSVINVKTD--GGEPSGLLKNFQDIMRKQRPEGVSHLLQDNLP------KSVS 415
+A N S I++K GG+ K M + +G S ++Q P K+
Sbjct: 41 LATQGPNCSQIHLKATKAGGDSPSWAKGHCPFMLSELQDGKSKIVQKAAPEVQEDVKAFK 100
Query: 416 T----FQYDRFFEKKIDEKKNDHTYRVFKTVNRKAQCFPMADDYSDSLVSKRQVSVWCSN 583
T F YD+FF KI EKK DHTYRVFKTVNR A +P A +S++ V+ + VSVWCSN
Sbjct: 101 TGNYVFSYDQFFRDKIMEKKQDHTYRVFKTVNRWADAYPFAQHFSEASVASKDVSVWCSN 160
Query: 584 DYLGMSRHPRVCGAVIDTLKQYGTGAGGTRNISGTSKFHVDLEQELADLHGKDAALLFSS 763
DYLGMSRHP+V A +TL+++G GAGGTRNISGTSKFHV+LEQELA+LH KD+ALLFSS
Sbjct: 161 DYLGMSRHPQVLQATQETLQRHGAGAGGTRNISGTSKFHVELEQELAELHQKDSALLFSS 220
Query: 764 CFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNSGVPKYIFRHNDVHHLRELLQRS 943
CFVANDSTLFTLAK++PGCEIYSD+GNHASMIQGIRNSG K++FRHND HL++LL++S
Sbjct: 221 CFVANDSTLFTLAKILPGCEIYSDAGNHASMIQGIRNSGAAKFVFRHNDPDHLKKLLEKS 280
Query: 944 DPAVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGLYXXXXXXXXXXXX 1123
+P +PKIVAFETVHSMDGA+CPLEELCDV+H++GA+TFVDEVHAVGLY
Sbjct: 281 NPKIPKIVAFETVHSMDGAICPLEELCDVSHQYGALTFVDEVHAVGLYGSRGAGIGERDG 340
Query: 1124 VMPKMDIISGTLGKAFGCVGGYIASTNSLVDTIRSYAAGFIFTTSLPPMVLAGALESVRI 1303
+M K+DIISGTLGKAFGCVGGYIAST LVD +RSYAAGFIFTTSLPPMVL+GALESVR+
Sbjct: 341 IMHKIDIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESVRL 400
Query: 1304 LKSAEGRALRRQHQRNVKLMRQMLMDAGLPVIHCPSHIIPVRVSDAAKNTEICDELMSRY 1483
LK EG+ALRR HQRNVK MRQ+LMD GLPVI CPSHIIP+RV +AA N+++CD L+S++
Sbjct: 401 LKGEEGQALRRAHQRNVKHMRQLLMDRGLPVIPCPSHIIPIRVGNAALNSKLCDLLLSKH 460
Query: 1484 NIYVQAINYPTVPRGG---RAAADCPHAP 1561
IYVQAINYPTVPRG R A H+P
Sbjct: 461 GIYVQAINYPTVPRGEELLRLAPSPHHSP 489
>ref|NP_001165161.1| 2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial isoform 1
precursor [Homo sapiens].
Length = 445
Score = 188 bits (478), Expect = 1e-47
Identities = 111/320 (34%), Positives = 171/320 (53%), Gaps = 1/320 (0%)
Frame = +2
Query: 572 WCSNDYLGMSRHPRVCGAVIDTLKQYGTGAGGTRNISGTSKFHVDLEQELADLHGKDAAL 751
+C+N+YLG+S HP V A + L+++G G R I GT H +LE ++A H ++ A+
Sbjct: 96 FCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKNLEAKIARFHQREDAI 155
Query: 752 LFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNSGVPKYIFRHNDVHHLREL 931
L+ SC+ AN + LF A + P + SD NHAS+I GIR KY +RH D+ L
Sbjct: 156 LYPSCYDAN-AGLFE-ALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDMADLEAK 213
Query: 932 LQRSDPAVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGLYXXXXXXXX 1111
LQ + ++VA + SMDG + PL+E+C +A +GA+ F+DE HA G
Sbjct: 214 LQEAQKHRLRLVATDGAFSMDGDIAPLQEICCLASRYGALVFMDECHATGFLGPTGRGTD 273
Query: 1112 XXXXVMPKMDIISGTLGKAF-GCVGGYIASTNSLVDTIRSYAAGFIFTTSLPPMVLAGAL 1288
VM ++ II+ TLGKA G GGY LV +R A ++F+ SLPP V+ A
Sbjct: 274 ELLGVMDQVTIINSTLGKALGGASGGYTTGPGPLVSLLRQRARPYLFSNSLPPAVVGCAS 333
Query: 1289 ESVRILKSAEGRALRRQHQRNVKLMRQMLMDAGLPVIHCPSHIIPVRVSDAAKNTEICDE 1468
+++ +L + + + + R + AG + I PV + DA + + D+
Sbjct: 334 KALDLLMGS--NTIVQSMAAKTQRFRSKMEAAGFTISGASHPICPVMLGDARLASRMADD 391
Query: 1469 LMSRYNIYVQAINYPTVPRG 1528
++ R I+V +YP VP+G
Sbjct: 392 MLKR-GIFVIGFSYPVVPKG 410
>ref|NP_055106.1| 2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial isoform 2
precursor [Homo sapiens].
Length = 419
Score = 188 bits (478), Expect = 1e-47
Identities = 111/320 (34%), Positives = 171/320 (53%), Gaps = 1/320 (0%)
Frame = +2
Query: 572 WCSNDYLGMSRHPRVCGAVIDTLKQYGTGAGGTRNISGTSKFHVDLEQELADLHGKDAAL 751
+C+N+YLG+S HP V A + L+++G G R I GT H +LE ++A H ++ A+
Sbjct: 70 FCANNYLGLSSHPEVIQAGLQALEEFGAGLSSVRFICGTQSIHKNLEAKIARFHQREDAI 129
Query: 752 LFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNSGVPKYIFRHNDVHHLREL 931
L+ SC+ AN + LF A + P + SD NHAS+I GIR KY +RH D+ L
Sbjct: 130 LYPSCYDAN-AGLFE-ALLTPEDAVLSDELNHASIIDGIRLCKAHKYRYRHLDMADLEAK 187
Query: 932 LQRSDPAVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGLYXXXXXXXX 1111
LQ + ++VA + SMDG + PL+E+C +A +GA+ F+DE HA G
Sbjct: 188 LQEAQKHRLRLVATDGAFSMDGDIAPLQEICCLASRYGALVFMDECHATGFLGPTGRGTD 247
Query: 1112 XXXXVMPKMDIISGTLGKAF-GCVGGYIASTNSLVDTIRSYAAGFIFTTSLPPMVLAGAL 1288
VM ++ II+ TLGKA G GGY LV +R A ++F+ SLPP V+ A
Sbjct: 248 ELLGVMDQVTIINSTLGKALGGASGGYTTGPGPLVSLLRQRARPYLFSNSLPPAVVGCAS 307
Query: 1289 ESVRILKSAEGRALRRQHQRNVKLMRQMLMDAGLPVIHCPSHIIPVRVSDAAKNTEICDE 1468
+++ +L + + + + R + AG + I PV + DA + + D+
Sbjct: 308 KALDLLMGS--NTIVQSMAAKTQRFRSKMEAAGFTISGASHPICPVMLGDARLASRMADD 365
Query: 1469 LMSRYNIYVQAINYPTVPRG 1528
++ R I+V +YP VP+G
Sbjct: 366 MLKR-GIFVIGFSYPVVPKG 384
>ref|NP_004854.1| serine palmitoyltransferase 2 [Homo sapiens].
Length = 562
Score = 140 bits (354), Expect = 3e-33
Identities = 114/435 (26%), Positives = 204/435 (46%), Gaps = 26/435 (5%)
Frame = +2
Query: 341 QDIMRKQRPEGVSHLLQDNLPKS-VSTFQ-YDRFFEKKIDEKKNDHTYRVFKTV------ 496
+D +R R E H + K VS +Q ++ F+ + + + D+ R +V
Sbjct: 88 RDFLRYWRIEKCHHATEREEQKDFVSLYQDFENFYTRNLYMRIRDNWNRPICSVPGARVD 147
Query: 497 --NRKAQCFPMADDYSDSLVSKRQVSVWCSNDYLGMSRHPRVCG-AVIDTLKQYGTGAGG 667
R++ + + Y+ +++ + V S +YLG +R+ C A L++YG G
Sbjct: 148 IMERQSHDYNWSFKYTGNII--KGVINMGSYNYLGFARNTGSCQEAAAKVLEEYGAGVCS 205
Query: 668 TRNISGTSKFHVDLEQELADLHGKDAALLFSSCFVANDSTLFTLAKMMPGCEIYSDSGNH 847
TR G H +LE+ +A G +AA+ + F N + L GC I SD NH
Sbjct: 206 TRQEIGNLDKHEELEELVARFLGVEAAMAYGMGFATNSMNIPALVGK--GCLILSDELNH 263
Query: 848 ASMIQGIRNSGVPKYIFRHNDVHHLRELLQRS---------DPAVPKIVAFETVHSMDGA 1000
AS++ G R SG IF+HN++ L +LL+ + P ++ E ++SM+G+
Sbjct: 264 ASLVLGARLSGATIRIFKHNNMQSLEKLLKDAIVYGQPRTRRPWKKILILVEGIYSMEGS 323
Query: 1001 VCPLEELCDVAHEFGAITFVDEVHAVGLYXXXXXXXXXXXXVMPK-MDIISGTLGKAFGC 1177
+ L E+ + ++ A ++DE H++G + P+ +D++ GT K+FG
Sbjct: 324 IVRLPEVIALKKKYKAYLYLDEAHSIGALGPTGRGVVEYFGLDPEDVDVMMGTFTKSFGA 383
Query: 1178 VGGYIASTNSLVDTIRSYAAGFIFTTSLPPMVLAGALESVRILKSAEGRALRR----QHQ 1345
GGYI L+D +R+++ ++ TSL P V+ + S++ + +G +L + Q
Sbjct: 384 SGGYIGGKKELIDYLRTHSHSAVYATSLSPPVVEQIITSMKCIMGQDGTSLGKECVQQLA 443
Query: 1346 RNVKLMRQMLMDAGLPVI-HCPSHIIPVRVSDAAKNTEICDELMSRYNIYVQAINYPTVP 1522
N + R+ L + G + + S ++P+ + AK E++ R NI V + +P P
Sbjct: 444 ENTRYFRRRLKEMGFIIYGNEDSPVVPLMLYMPAKIGAFGREMLKR-NIGVVVVGFPATP 502
Query: 1523 RGGRAAADCPHAPST 1567
A C A T
Sbjct: 503 IIESRARFCLSAAHT 517
>ref|NP_060797.2| serine palmitoyltransferase 3 [Homo sapiens].
Length = 552
Score = 135 bits (339), Expect = 1e-31
Identities = 95/346 (27%), Positives = 168/346 (48%), Gaps = 16/346 (4%)
Frame = +2
Query: 578 SNDYLGMS-RHPRVCGAVIDTLKQYGTGAGGTRNISGTSKFHVDLEQELADLHGKDAALL 754
S ++LG++ ++ + D L+ YGTG TR+ GT H +LE +A +AA++
Sbjct: 167 SYNFLGLAAKYDESMRTIKDVLEVYGTGVASTRHEMGTLDKHKELEDLVAKFLNVEAAMV 226
Query: 755 FSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNSGVPKYIFRHNDVHHLRELL 934
F F N + L GC I SD NH S++ G R SG IF+HN+ L +LL
Sbjct: 227 FGMGFATNSMNIPALVGK--GCLILSDELNHTSLVLGARLSGATIRIFKHNNTQSLEKLL 284
Query: 935 Q--------RSDPAVPKI-VAFETVHSMDGAVCPLEELCDVAHEFGAITFVDEVHAVGLY 1087
+ R+ A KI + E V+SM+G++ L ++ + ++ A ++DE H++G
Sbjct: 285 RDAVIYGQPRTRRAWKKILILVEGVYSMEGSIVHLPQIIALKKKYKAYLYIDEAHSIGAV 344
Query: 1088 XXXXXXXXXXXXVMP-KMDIISGTLGKAFGCVGGYIASTNSLVDTIRSYAAGFIFTTSLP 1264
+ P ++D++ GT K+FG GGYIA LVD +R ++ ++ +S+
Sbjct: 345 GPTGRGVTEFFGLDPHEVDVLMGTFTKSFGASGGYIAGRKDLVDYLRVHSHSAVYASSMS 404
Query: 1265 PMVLAGALESVRILKSAEG--RALRRQHQ--RNVKLMRQMLMDAGLPVI-HCPSHIIPVR 1429
P + + S++++ +G + L+R Q +N + RQ L + G + + + ++P+
Sbjct: 405 PPIAEQIIRSLKLIMGLDGTTQGLQRVQQLAKNTRYFRQRLQEMGFIIYGNENASVVPLL 464
Query: 1430 VSDAAKNTEICDELMSRYNIYVQAINYPTVPRGGRAAADCPHAPST 1567
+ K ++ + I V + +P P A C A T
Sbjct: 465 LYMPGKVAAFARHMLEK-KIGVVVVGFPATPLAEARARFCVSAAHT 509
>ref|NP_006406.1| serine palmitoyltransferase 1 isoform a [Homo sapiens].
Length = 473
Score = 110 bits (274), Expect = 5e-24
Identities = 70/271 (25%), Positives = 133/271 (49%), Gaps = 11/271 (4%)
Frame = +2
Query: 542 SLVSKRQVSVWCSNDYLGMSRHPRVCGAVIDTLKQYGTGAGGTRNISGTSKFHVDLEQEL 721
++V+ ++ + S ++LG+ +PRV A + +LK+YG G G R GT H+DLE L
Sbjct: 93 TVVNGKECINFASFNFLGLLDNPRVKAAALASLKKYGVGTCGPRGFYGTFDVHLDLEDRL 152
Query: 722 ADLHGKDAALLFSSCFVANDSTLFTLAKMMPGCEIYSDSGNHASMIQGIRNSGVPKYIFR 901
A + A+++S F S + +K G ++ D ++ +G++ S +F+
Sbjct: 153 AKFMKTEEAIIYSYGFATIASAIPAYSKR--GDIVFVDRAACFAIQKGLQASRSDIKLFK 210
Query: 902 HNDVHHLRELLQ----------RSDPAVPKIVAFETVHSMDGAVCPLEELCDVAHEFGAI 1051
HND+ L LL+ R + + E ++ G +CPL EL + +++ A
Sbjct: 211 HNDMADLERLLKEQEIEDQKNPRKARVTRRFIVVEGLYMNTGTICPLPELVKLKYKYKAR 270
Query: 1052 TFVDEVHAVGLYXXXXXXXXXXXXV-MPKMDIISGTLGKAFGCVGGYIASTNSLVDTIRS 1228
F++E + G+ + + +D+IS + A +GG+ + ++D R
Sbjct: 271 IFLEESLSFGVLGEHGRGVTEHYGINIDDIDLISANMENALASIGGFCCGRSFVIDHQRL 330
Query: 1229 YAAGFIFTTSLPPMVLAGALESVRILKSAEG 1321
G+ F+ SLPP++ A A+E++ I++ G
Sbjct: 331 SGQGYCFSASLPPLLAAAAIEALNIMEENPG 361
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 69,335,063
Number of extensions: 1964658
Number of successful extensions: 8188
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 8146
Number of HSP's successfully gapped: 12
Length of query: 560
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 452
Effective length of database: 14,737,052
Effective search space: 6661147504
Effective search space used: 6661147504
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012735
(1681 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 539 e-150
Sscrofa_ChrX 82 1e-12
>Sscrofa_Chr13
|| Length = 218635234
Score = 539 bits (272), Expect = e-150
Identities = 272/272 (100%)
Strand = Plus / Minus
Query: 1160 ggcaaagcctttggctgtgttggagggtacatcgccagcacgaattccctggttgacacc 1219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37660647 ggcaaagcctttggctgtgttggagggtacatcgccagcacgaattccctggttgacacc 37660588
Query: 1220 atccggtcctacgcggctggcttcatcttcaccacctccctgccacccatggtgctggct 1279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37660587 atccggtcctacgcggctggcttcatcttcaccacctccctgccacccatggtgctggct 37660528
Query: 1280 ggagccctggaatctgtgcggatcctcaagagtgccgagggccgggccctccgccgccag 1339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37660527 ggagccctggaatctgtgcggatcctcaagagtgccgagggccgggccctccgccgccag 37660468
Query: 1340 caccagcgcaacgtcaagctcatgaggcagatgctgatggacgccggcctcccagtcatc 1399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37660467 caccagcgcaacgtcaagctcatgaggcagatgctgatggacgccggcctcccagtcatc 37660408
Query: 1400 cactgccccagtcacatcatccctgtccgggt 1431
||||||||||||||||||||||||||||||||
Sbjct: 37660407 cactgccccagtcacatcatccctgtccgggt 37660376
Score = 452 bits (228), Expect = e-124
Identities = 228/228 (100%)
Strand = Plus / Minus
Query: 30 aggacaaaactgccaaagccgaggttcagcaggctcctgatggctcccagcggaccccag 89
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37666904 aggacaaaactgccaaagccgaggttcagcaggctcctgatggctcccagcggaccccag 37666845
Query: 90 atggcacgcagcttccaactggtcacccctcccctgcctcgagccagagcactgcaagca 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37666844 atggcacgcagcttccaactggtcacccctcccctgcctcgagccagagcactgcaagca 37666785
Query: 150 aatgtcctttcctggcggcccagatgagccagggtggcagcagcgtcttccgcaaagcca 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37666784 aatgtcctttcctggcggcccagatgagccagggtggcagcagcgtcttccgcaaagcca 37666725
Query: 210 gcctggaacttcaggaggacgtgcaggaaatgcatgctgtgagggaag 257
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37666724 gcctggaacttcaggaggacgtgcaggaaatgcatgctgtgagggaag 37666677
Score = 394 bits (199), Expect = e-107
Identities = 215/223 (96%)
Strand = Plus / Minus
Query: 408 ctgtttccacttttcagtatgatcgtttctttgagaagaaaattgatgagnnnnnnnntg 467
|||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 37665075 ctgtttccacttttcagtatgatcgtttctttgagaagaaaattgatgagaaaaaaaatg 37665016
Query: 468 accatacatatcgggttttcaaaactgtgaaccggaaggcgcagtgcttccccatggcgg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37665015 accatacatatcgggttttcaaaactgtgaaccggaaggcgcagtgcttccccatggcgg 37664956
Query: 528 atgactattcagactctctcgtcagcaaaaggcaggtgtccgtctggtgtagcaacgact 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37664955 atgactattcagactctctcgtcagcaaaaggcaggtgtccgtctggtgtagcaacgact 37664896
Query: 588 acctcgggatgagtcgccacccacgggtgtgtggggccgtcat 630
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37664895 acctcgggatgagtcgccacccacgggtgtgtggggccgtcat 37664853
Score = 369 bits (186), Expect = 3e-99
Identities = 186/186 (100%)
Strand = Plus / Minus
Query: 631 agatactttgaaacaatatggtactggagctgggggtactagaaacatttctggaactag 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37663943 agatactttgaaacaatatggtactggagctgggggtactagaaacatttctggaactag 37663884
Query: 691 taaattccacgtggacctggagcaggagctggctgacctccacgggaaagatgcagcact 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37663883 taaattccacgtggacctggagcaggagctggctgacctccacgggaaagatgcagcact 37663824
Query: 751 cttattttcctcgtgctttgtggccaatgactcaaccctcttcactctggctaaaatgat 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37663823 cttattttcctcgtgctttgtggccaatgactcaaccctcttcactctggctaaaatgat 37663764
Query: 811 gccagg 816
||||||
Sbjct: 37663763 gccagg 37663758
Score = 363 bits (183), Expect = 2e-97
Identities = 183/183 (100%)
Strand = Plus / Minus
Query: 814 aggctgtgagatttactctgattctgggaaccatgcctccatgatccaagggatccggaa 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37662972 aggctgtgagatttactctgattctgggaaccatgcctccatgatccaagggatccggaa 37662913
Query: 874 cagcggagtgcccaagtacatcttccgccacaatgacgtccaccacctccgagaactgct 933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37662912 cagcggagtgcccaagtacatcttccgccacaatgacgtccaccacctccgagaactgct 37662853
Query: 934 gcagaggtcggaccccgcagtccccaagattgtcgcttttgaaactgtgcattccatgga 993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37662852 gcagaggtcggaccccgcagtccccaagattgtcgcttttgaaactgtgcattccatgga 37662793
Query: 994 cgg 996
|||
Sbjct: 37662792 cgg 37662790
Score = 331 bits (167), Expect = 7e-88
Identities = 167/167 (100%)
Strand = Plus / Minus
Query: 995 ggggctgtgtgcccactggaagagctgtgtgatgtggctcacgagtttggagccatcacc 1054
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37662453 ggggctgtgtgcccactggaagagctgtgtgatgtggctcacgagtttggagccatcacc 37662394
Query: 1055 ttcgtggatgaggtccatgcagtggggctgtatggggctcaaggcggagggattggcgat 1114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37662393 ttcgtggatgaggtccatgcagtggggctgtatggggctcaaggcggagggattggcgat 37662334
Query: 1115 cgggatggagttatgccaaaaatggacatcatttctggaactcttgg 1161
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37662333 cgggatggagttatgccaaaaatggacatcatttctggaactcttgg 37662287
Score = 301 bits (152), Expect = 7e-79
Identities = 152/152 (100%)
Strand = Plus / Minus
Query: 256 agaggttgctcaaacctcagtgaatcccagtgtgattaacgtgaagactgatggagggga 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37665864 agaggttgctcaaacctcagtgaatcccagtgtgattaacgtgaagactgatggagggga 37665805
Query: 316 gccgagtggactgctcaagaactttcaggatatcatgcgaaagcagagaccagaaggggt 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37665804 gccgagtggactgctcaagaactttcaggatatcatgcgaaagcagagaccagaaggggt 37665745
Query: 376 ctcccatcttcttcaagataacttgccaaaat 407
||||||||||||||||||||||||||||||||
Sbjct: 37665744 ctcccatcttcttcaagataacttgccaaaat 37665713
Score = 188 bits (95), Expect = 7e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 1429 ggtttcagatgctgctaaaaacacagagatctgtgatgaactaatgagtagatacaacat 1488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37659657 ggtttcagatgctgctaaaaacacagagatctgtgatgaactaatgagtagatacaacat 37659598
Query: 1489 ctacgtccaagcgatcaattaccccacggtgcccc 1523
|||||||||||||||||||||||||||||||||||
Sbjct: 37659597 ctacgtccaagcgatcaattaccccacggtgcccc 37659563
Score = 113 bits (57), Expect = 3e-22
Identities = 86/92 (93%), Gaps = 4/92 (4%)
Strand = Plus / Minus
Query: 1594 gacaatctgctggctgcatggaaacaagttgggctggaactca--gcacattcctcagct 1651
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 37658190 gacaatctgctggctgcatggaagcaagttgggctggaactcaagccacattcctcagct 37658131
Query: 1652 gagtg-aacttctgcaggagg-cactgcattt 1681
||||| ||||||||||||||| ||||||||||
Sbjct: 37658130 gagtgcaacttctgcaggaggccactgcattt 37658099
>Sscrofa_ChrX
|| Length = 144288218
Score = 81.8 bits (41), Expect = 1e-12
Identities = 122/149 (81%)
Strand = Plus / Minus
Query: 1013 gaagagctgtgtgatgtggctcacgagtttggagccatcaccttcgtggatgaggtccat 1072
|||||| ||||||||||||||||| ||| ||| || | || || ||||||||||| |||
Sbjct: 53815312 gaagagttgtgtgatgtggctcaccagtatggggctctgacttttgtggatgaggttcat 53815253
Query: 1073 gcagtggggctgtatggggctcaaggcggagggattggcgatcgggatggagttatgcca 1132
|| || || ||||||||| | | ||||| |||||||| || || |||||| ||||||
Sbjct: 53815252 gctgtaggactgtatgggtcccgaggcgctgggattggggagcgtgatggaattatgcat 53815193
Query: 1133 aaaatggacatcatttctggaactcttgg 1161
|| || |||||||| ||||||||||||||
Sbjct: 53815192 aagattgacatcatctctggaactcttgg 53815164
Score = 63.9 bits (32), Expect = 3e-07
Identities = 71/84 (84%)
Strand = Plus / Minus
Query: 1226 tcctacgcggctggcttcatcttcaccacctccctgccacccatggtgctggctggagcc 1285
||||| || ||||| |||||||||||||| || ||||| ||||||||||| |||| ||
Sbjct: 53814529 tcctatgctgctggtttcatcttcaccacttcactgcctcccatggtgctctctggggct 53814470
Query: 1286 ctggaatctgtgcggatcctcaag 1309
|||||||| |||||| | ||||||
Sbjct: 53814469 ctggaatccgtgcggctgctcaag 53814446
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 44,857,610
Number of extensions: 296
Number of successful extensions: 296
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 295
Number of HSP's successfully gapped: 12
Length of query: 1681
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1659
Effective length of database: 2,808,408,574
Effective search space: 4659149824266
Effective search space used: 4659149824266
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)