Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012736
(1043 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029785.1| mitochondrial-processing peptidase subunit b... 602 e-172
Alignment gi|XP_001789518.1| PREDICTED: mitochondrial-processing peptidas... 597 e-171
Alignment gi|NP_777054.1| cytochrome b-c1 complex subunit 1, mitochondria... 359 2e-99
Alignment gi|NP_001070432.1| mitochondrial-processing peptidase subunit a... 130 2e-30
Alignment gi|NP_777055.1| cytochrome b-c1 complex subunit 2, mitochondria... 97 3e-20
Alignment gi|XP_002690086.1| PREDICTED: cytochrome b-c1 complex subunit 2... 96 5e-20
Alignment gi|XP_001789022.1| PREDICTED: cytochrome b-c1 complex subunit 2... 96 5e-20
Alignment gi|XP_001790174.1| PREDICTED: cytochrome b-c1 complex subunit 2... 96 5e-20
Alignment gi|XP_002697371.1| PREDICTED: cytochrome b-c1 complex subunit 2... 94 3e-19
Alignment gi|XP_001252309.1| PREDICTED: cytochrome b-c1 complex subunit 2... 94 3e-19
>ref|NP_001029785.1| mitochondrial-processing peptidase subunit beta precursor [Bos
taurus].
Length = 490
Score = 602 bits (1552), Expect = e-172
Identities = 299/315 (94%), Positives = 308/315 (97%)
Frame = +2
Query: 74 RKRLWGFSKRLLVGGPARQSLYFGGNRLRSTQAATQVFLNVPETRVTCLENGLRVASEDS 253
R+RL GF++RLL+GG A +SLYFGGNRLRSTQAA QV LNVPETRVTCLENGLRVASEDS
Sbjct: 16 RRRLCGFTERLLIGGAAGRSLYFGGNRLRSTQAAAQVVLNVPETRVTCLENGLRVASEDS 75
Query: 254 GLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYT 433
GL+TCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYT
Sbjct: 76 GLATCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYT 135
Query: 434 SREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQEVVF 613
SREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQEVVF
Sbjct: 136 SREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQEVVF 195
Query: 614 DYLHATAYQNTALGRTILGPTENIKSINRKDLVDYITTHYKGPRIVLAAAGGVSHDELLE 793
DYLHATAYQNTALGRTILGPTENIKSINRKDLVDYITTHYKGPRIVLAAAGGVSHDELLE
Sbjct: 196 DYLHATAYQNTALGRTILGPTENIKSINRKDLVDYITTHYKGPRIVLAAAGGVSHDELLE 255
Query: 794 LAKFHFGDSLSPDEGEIPALPPCKFTGSEIRVRDDKMPLAHLAIAVEAVGWAHPDTICLM 973
LAKFHFG+SLS +GEIPALPPCKFTGSEIRVRDDKMPLAHLA+AVEAVGWAHPDTICLM
Sbjct: 256 LAKFHFGESLSTHKGEIPALPPCKFTGSEIRVRDDKMPLAHLAVAVEAVGWAHPDTICLM 315
Query: 974 VANTLIGNWDRSFGG 1018
VANTLIGNWDRSFGG
Sbjct: 316 VANTLIGNWDRSFGG 330
>ref|XP_001789518.1| PREDICTED: mitochondrial-processing peptidase subunit beta-like [Bos
taurus].
Length = 490
Score = 597 bits (1539), Expect = e-171
Identities = 297/315 (94%), Positives = 307/315 (97%)
Frame = +2
Query: 74 RKRLWGFSKRLLVGGPARQSLYFGGNRLRSTQAATQVFLNVPETRVTCLENGLRVASEDS 253
R+RL GF++RLL+GG A +SLYFGGNRLRSTQAA QV LNVPETRVTCLENGLRVASEDS
Sbjct: 16 RRRLCGFTERLLIGGAAGRSLYFGGNRLRSTQAAAQVVLNVPETRVTCLENGLRVASEDS 75
Query: 254 GLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYT 433
GL+TCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYT
Sbjct: 76 GLATCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYT 135
Query: 434 SREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQEVVF 613
SREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQEVVF
Sbjct: 136 SREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQEVVF 195
Query: 614 DYLHATAYQNTALGRTILGPTENIKSINRKDLVDYITTHYKGPRIVLAAAGGVSHDELLE 793
DYLHATAYQNTALGRTILGPTENIKSINRKDLVDYITTHYKGPRIVLAAAGGVSHDELL+
Sbjct: 196 DYLHATAYQNTALGRTILGPTENIKSINRKDLVDYITTHYKGPRIVLAAAGGVSHDELLD 255
Query: 794 LAKFHFGDSLSPDEGEIPALPPCKFTGSEIRVRDDKMPLAHLAIAVEAVGWAHPDTICLM 973
LAKFHFG+SLS +GEIPALP CKFTGSEIRVRDDKMPLAHLA+AVEAVGWAHPDTICLM
Sbjct: 256 LAKFHFGESLSTHKGEIPALPLCKFTGSEIRVRDDKMPLAHLAVAVEAVGWAHPDTICLM 315
Query: 974 VANTLIGNWDRSFGG 1018
VANTLIGNWDRSFGG
Sbjct: 316 VANTLIGNWDRSFGG 330
>ref|NP_777054.1| cytochrome b-c1 complex subunit 1, mitochondrial precursor [Bos
taurus].
Length = 480
Score = 359 bits (922), Expect = 2e-99
Identities = 171/289 (59%), Positives = 230/289 (79%), Gaps = 1/289 (0%)
Frame = +2
Query: 155 LRSTQAATQVFLNVPETRVTCLENGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTAH 334
LR T Q +VPET+V+ L+NGLRVASE S TCTVG+WIDAGSRYE+EKNNG +
Sbjct: 32 LRGTATYAQALQSVPETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGY 91
Query: 335 FLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADII 514
F+EH+AFKGTK R LE E+E+MGAHLNAY++RE T YY KA SKDLP+AVE+LADI+
Sbjct: 92 FVEHLAFKGTKNRPGNALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIV 151
Query: 515 QNSTLGEAEIERERGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSI 694
QN +L +++IE+ER VIL+E+QE +T++++VVF+YLHATA+Q T L +++ GP+EN++ +
Sbjct: 152 QNCSLEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKL 211
Query: 695 NRKDLVDYITTHYKGPRIVLAAAGGVSHDELLELAKFHF-GDSLSPDEGEIPALPPCKFT 871
+R DL +Y++ HYK PR+VLAAAGG+ H +LL+LA+ HF G S + DE +P L PC+FT
Sbjct: 212 SRADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTLSPCRFT 271
Query: 872 GSEIRVRDDKMPLAHLAIAVEAVGWAHPDTICLMVANTLIGNWDRSFGG 1018
GS+I R+D +PLAH+AIAVE GWAHPD + L VAN +IG++D ++GG
Sbjct: 272 GSQICHREDGLPLAHVAIAVEGPGWAHPDNVALQVANAIIGHYDCTYGG 320
>ref|NP_001070432.1| mitochondrial-processing peptidase subunit alpha precursor [Bos
taurus].
Length = 525
Score = 130 bits (327), Expect = 2e-30
Identities = 90/281 (32%), Positives = 149/281 (53%), Gaps = 16/281 (5%)
Frame = +2
Query: 200 ETRVTCLENGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKK-RS 376
ET+VT L+NGLRVAS++ CTVG+ I++GSRYE + +G AHFLE +AF T++ S
Sbjct: 66 ETKVTTLDNGLRVASQNKFGQFCTVGILINSGSRYEAKYLSGIAHFLEKLAFSSTERFDS 125
Query: 377 QLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERER 556
+ ++ L +E G + TSR+ T+Y A SK L V +LAD++ + L + EIE R
Sbjct: 126 KDEILLTLEKHGGICDCQTSRDTTMYAVSADSKGLDTVVGLLADVVLHPRLTDEEIEMAR 185
Query: 557 GVILREMQE--VETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSINRKDLVDYITTH 730
+ E+++ + + + ++ + +H AY+ +G P EN+ ++R L Y+ +
Sbjct: 186 MAVQFELEDLNMRPDPEPLLTEMVHEAAYRENTVGLHRFCPAENVGKMDRDVLHAYLRNY 245
Query: 731 YKGPRIVLAAAGGVSHDELLELA-KFHFGDSLSPDEGEIPAL--PPCKFTGSEIRVRDDK 901
Y R+VLA GV H +L+E A K+ G + G + ++TG +++ D
Sbjct: 246 YTPDRMVLAGV-GVEHAQLVECARKYLLGTCPAWGTGAAVHVDRSVAQYTGGIVKLERDM 304
Query: 902 M----------PLAHLAIAVEAVGWAHPDTICLMVANTLIG 994
L H+ I +E+ + D I V N ++G
Sbjct: 305 SNVSLGPTPFPELTHIMIGLESCSFLEGDFIPFAVLNMMMG 345
>ref|NP_777055.1| cytochrome b-c1 complex subunit 2, mitochondrial precursor [Bos
taurus].
Length = 453
Score = 96.7 bits (239), Expect = 3e-20
Identities = 77/281 (27%), Positives = 127/281 (45%)
Frame = +2
Query: 152 RLRSTQAATQVFLNVPETRVTCLENGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTA 331
++++T+A V + + T L NGL +AS ++ +GL+I AGSRYEN N GT+
Sbjct: 21 KVKATEAPAGVPPHPQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTS 80
Query: 332 HFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADI 511
H L + TK S + IE +G L+ ++RE Y + D+ +E L ++
Sbjct: 81 HLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNV 140
Query: 512 IQNSTLGEAEIERERGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKS 691
E+ + + + N Q V + LHA AY+N AL ++ P I
Sbjct: 141 TTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAYRN-ALANSLYCPDYRIGK 199
Query: 692 INRKDLVDYITTHYKGPRIVLAAAGGVSHDELLELAKFHFGDSLSPDEGEIPALPPCKFT 871
+ +L DY+ H+ R+ L GVSH L ++A+ L+ G + K+
Sbjct: 200 VTPVELHDYVQNHFTSARMALIGL-GVSHPVLKQVAE----QFLNIRGGLGLSGAKAKYH 254
Query: 872 GSEIRVRDDKMPLAHLAIAVEAVGWAHPDTICLMVANTLIG 994
G EIR ++ L H A+ E+ + V ++G
Sbjct: 255 GGEIREQNGD-SLVHAALVAESAAIGSAEANAFSVLQHVLG 294
>ref|XP_002690086.1| PREDICTED: cytochrome b-c1 complex subunit 2, mitochondrial-like
[Bos taurus].
Length = 453
Score = 95.9 bits (237), Expect = 5e-20
Identities = 78/276 (28%), Positives = 127/276 (46%), Gaps = 2/276 (0%)
Frame = +2
Query: 152 RLRSTQAATQVFLNVPETRVTCLENGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTA 331
++++T A V + + T L NGL +AS ++ +GL+I AGSRYEN N GT+
Sbjct: 21 KVKATAAPAGVPPHPQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTS 80
Query: 332 HFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADI 511
H L + TK S + IE +G L+ ++RE Y + D+ +E L ++
Sbjct: 81 HLLRLASSLTTKGASSFKITRGIEAVGGKLSMMSTRENMAYTVECLRDDVDILMEFLLNV 140
Query: 512 IQNSTLGEAEIERERGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKS 691
E+ + + + N Q V + LHA AY+N AL ++ P I
Sbjct: 141 TTAPEFRRWEVAALQPQLRIDKAVALQNPQAYVIENLHAAAYRN-ALANSLYCPDYRIGK 199
Query: 692 INRKDLVDYITTHYKGPRIVLAAAGGVSHDELLELAKFHFGDSLSPDEGEIPALPPCKFT 871
+ +L DY+ H+ R+ L GVSH L ++A+ L+ G + K+
Sbjct: 200 VTPVELHDYVQNHFTSARMALIGL-GVSHPVLKQVAE----QFLNIRGGLGLSGAKAKYH 254
Query: 872 GSEIRVRDDKMPLAHLAIAVE--AVGWAHPDTICLM 973
G EIR ++ L H A+ E A+G A + ++
Sbjct: 255 GGEIREQNGD-SLVHAALVAESAAIGSAEANVFSVL 289
>ref|XP_001789022.1| PREDICTED: cytochrome b-c1 complex subunit 2, mitochondrial-like
[Bos taurus].
Length = 453
Score = 95.9 bits (237), Expect = 5e-20
Identities = 78/276 (28%), Positives = 127/276 (46%), Gaps = 2/276 (0%)
Frame = +2
Query: 152 RLRSTQAATQVFLNVPETRVTCLENGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTA 331
++++T A V + + T L NGL +AS ++ +GL+I AGSRYEN N GT+
Sbjct: 21 KVKATAAPAGVPPHPQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTS 80
Query: 332 HFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADI 511
H L + TK S + IE +G L+ ++RE Y + D+ +E L ++
Sbjct: 81 HLLRLASSLTTKGASSFKITRGIEAVGGKLSMMSTRENMAYTVECLRDDVDILMEFLLNV 140
Query: 512 IQNSTLGEAEIERERGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKS 691
E+ + + + N Q V + LHA AY+N AL ++ P I
Sbjct: 141 TTAPEFRRWEVAALQPQLRIDKAVALQNPQAYVIENLHAAAYRN-ALANSLYCPDYRIGK 199
Query: 692 INRKDLVDYITTHYKGPRIVLAAAGGVSHDELLELAKFHFGDSLSPDEGEIPALPPCKFT 871
+ +L DY+ H+ R+ L GVSH L ++A+ L+ G + K+
Sbjct: 200 VTPVELHDYVQNHFTSARMALIGL-GVSHPVLKQVAE----QFLNIRGGLGLSGAKAKYH 254
Query: 872 GSEIRVRDDKMPLAHLAIAVE--AVGWAHPDTICLM 973
G EIR ++ L H A+ E A+G A + ++
Sbjct: 255 GGEIREQNGD-SLVHAALVAESAAIGSAEANVFSVL 289
>ref|XP_001790174.1| PREDICTED: cytochrome b-c1 complex subunit 2, mitochondrial-like
[Bos taurus].
Length = 453
Score = 95.9 bits (237), Expect = 5e-20
Identities = 78/276 (28%), Positives = 127/276 (46%), Gaps = 2/276 (0%)
Frame = +2
Query: 152 RLRSTQAATQVFLNVPETRVTCLENGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTA 331
++++T A V + + T L NGL +AS ++ +GL+I AGSRYEN N GT+
Sbjct: 21 KVKATAAPAGVPPHPQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTS 80
Query: 332 HFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADI 511
H L + TK S + IE +G L+ ++RE Y + D+ +E L ++
Sbjct: 81 HLLRLASSLTTKGASSFKITRGIEAVGGKLSMMSTRENMAYTVECLRDDVDILMEFLLNV 140
Query: 512 IQNSTLGEAEIERERGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKS 691
E+ + + + N Q V + LHA AY+N AL ++ P I
Sbjct: 141 TTAPEFRRWEVAALQPQLRIDKAVALQNPQAYVIENLHAAAYRN-ALANSLYCPDYRIGK 199
Query: 692 INRKDLVDYITTHYKGPRIVLAAAGGVSHDELLELAKFHFGDSLSPDEGEIPALPPCKFT 871
+ +L DY+ H+ R+ L GVSH L ++A+ L+ G + K+
Sbjct: 200 VTPVELHDYVQNHFTSARMALIGL-GVSHPVLKQVAE----QFLNIRGGLGLSGAKAKYH 254
Query: 872 GSEIRVRDDKMPLAHLAIAVE--AVGWAHPDTICLM 973
G EIR ++ L H A+ E A+G A + ++
Sbjct: 255 GGEIREQNGD-SLVHAALVAESAAIGSAEANVFSVL 289
>ref|XP_002697371.1| PREDICTED: cytochrome b-c1 complex subunit 2, mitochondrial-like
[Bos taurus].
Length = 453
Score = 93.6 bits (231), Expect = 3e-19
Identities = 77/275 (28%), Positives = 125/275 (45%), Gaps = 1/275 (0%)
Frame = +2
Query: 152 RLRSTQAATQVFLNVPETRVTCLENGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTA 331
++++T A V + T L NGL +AS ++ +GL+I AGSRYEN N GT+
Sbjct: 21 KVKATAAPAGVPPRPQDLEFTRLPNGLVIASLENHAPASRIGLFIKAGSRYENSNNLGTS 80
Query: 332 HFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADI 511
H L + TK S + IE +G L+ ++RE Y + D+ +E L ++
Sbjct: 81 HLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRENMAYTVECLWDDVDILMEFLLNV 140
Query: 512 IQNSTLGEAEIERERGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKS 691
E+ + + + N Q V + LHA AY+N AL ++ P I
Sbjct: 141 TTAPEFRRWEVAALQPQLRIDKAVAFQNPQAHVIENLHAAAYRN-ALANSLYCPDYRIGK 199
Query: 692 INRKDLVDYITTHYKGPRIVLAAAGGVSHDELLELAKFHFGDSLSPDEGEIPALPPCKFT 871
+ +L DY+ H+ R+ L GVSH L ++A+ L+ G + K+
Sbjct: 200 VTPVELHDYVQNHFTSARMALIGL-GVSHPVLKQVAE----QFLNIRGGLGLSGAKAKYH 254
Query: 872 GSEIRVRD-DKMPLAHLAIAVEAVGWAHPDTICLM 973
G EIR ++ D + A L A+G A + ++
Sbjct: 255 GGEIREQNGDSLVHAALVAQSAAIGSAEANVFSVL 289
>ref|XP_001252309.1| PREDICTED: cytochrome b-c1 complex subunit 2, mitochondrial-like
[Bos taurus].
Length = 453
Score = 93.6 bits (231), Expect = 3e-19
Identities = 77/275 (28%), Positives = 125/275 (45%), Gaps = 1/275 (0%)
Frame = +2
Query: 152 RLRSTQAATQVFLNVPETRVTCLENGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTA 331
++++T A V + T L NGL +AS ++ +GL+I AGSRYEN N GT+
Sbjct: 21 KVKATAAPAGVPPRPQDLEFTRLPNGLVIASLENHAPASRIGLFIKAGSRYENSNNLGTS 80
Query: 332 HFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADI 511
H L + TK S + IE +G L+ ++RE Y + D+ +E L ++
Sbjct: 81 HLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRENMAYTVECLWDDVDILMEFLLNV 140
Query: 512 IQNSTLGEAEIERERGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKS 691
E+ + + + N Q V + LHA AY+N AL ++ P I
Sbjct: 141 TTAPEFRRWEVAALQPQLRIDKAVAFQNPQAHVIENLHAAAYRN-ALANSLYCPDYRIGK 199
Query: 692 INRKDLVDYITTHYKGPRIVLAAAGGVSHDELLELAKFHFGDSLSPDEGEIPALPPCKFT 871
+ +L DY+ H+ R+ L GVSH L ++A+ L+ G + K+
Sbjct: 200 VTPVELHDYVQNHFTSARMALIGL-GVSHPVLKQVAE----QFLNIRGGLGLSGAKAKYH 254
Query: 872 GSEIRVRD-DKMPLAHLAIAVEAVGWAHPDTICLM 973
G EIR ++ D + A L A+G A + ++
Sbjct: 255 GGEIREQNGDSLVHAALVAQSAAIGSAEANVFSVL 289
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,754,895
Number of extensions: 930852
Number of successful extensions: 2613
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 2599
Number of HSP's successfully gapped: 10
Length of query: 347
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 244
Effective length of database: 14,273,310
Effective search space: 3482687640
Effective search space used: 3482687640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-012736
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012736
(1043 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533104.2| PREDICTED: similar to Mitochondrial processing ... 575 e-164
Alignment gi|XP_851209.1| PREDICTED: similar to ubiquinol-cytochrome c re... 358 5e-99
Alignment gi|XP_537796.1| PREDICTED: similar to mitochondrial matrix proc... 137 2e-32
Alignment gi|XP_536942.1| PREDICTED: similar to Ubiquinol-cytochrome-c re... 90 3e-18
Alignment gi|XP_861445.1| PREDICTED: similar to Ubiquinol-cytochrome-c re... 63 5e-10
>ref|XP_533104.2| PREDICTED: similar to Mitochondrial processing peptidase beta
subunit, mitochondrial precursor (Beta-MPP) (P-52) [Canis
familiaris].
Length = 513
Score = 575 bits (1482), Expect = e-164
Identities = 295/331 (89%), Positives = 302/331 (91%), Gaps = 16/331 (4%)
Frame = +2
Query: 74 RKRLWGFSKRLLVGG--------------PAR--QSLYFGGNRLRSTQAATQVFLNVPET 205
R+R W F++R VGG PAR SL GG+R RSTQAA QV LNVPET
Sbjct: 23 RRRPWAFAERRAVGGAAGRASRPPRVWVPPARGLPSLCLGGSRWRSTQAAPQVVLNVPET 82
Query: 206 RVTCLENGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLD 385
RVT L+NGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLD
Sbjct: 83 RVTRLDNGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLD 142
Query: 386 LELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVI 565
LELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVI
Sbjct: 143 LELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVI 202
Query: 566 LREMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSINRKDLVDYITTHYKGPR 745
LREMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSINRKDLVDYITTHYKGPR
Sbjct: 203 LREMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSINRKDLVDYITTHYKGPR 262
Query: 746 IVLAAAGGVSHDELLELAKFHFGDSLSPDEGEIPALPPCKFTGSEIRVRDDKMPLAHLAI 925
IVLAAAGGVSHDELLELAKFHFGDSLS +GEIPALPPCKFTGSEIRVRDDKMPLAHLA+
Sbjct: 263 IVLAAAGGVSHDELLELAKFHFGDSLSTHKGEIPALPPCKFTGSEIRVRDDKMPLAHLAV 322
Query: 926 AVEAVGWAHPDTICLMVANTLIGNWDRSFGG 1018
AVEAVGWAHPDTICLMVANTLIGNWDRSFGG
Sbjct: 323 AVEAVGWAHPDTICLMVANTLIGNWDRSFGG 353
>ref|XP_851209.1| PREDICTED: similar to ubiquinol-cytochrome c reductase core protein I
isoform 2 [Canis familiaris].
Length = 480
Score = 358 bits (919), Expect = 5e-99
Identities = 174/299 (58%), Positives = 226/299 (75%), Gaps = 1/299 (0%)
Frame = +2
Query: 125 RQSLYFGGNRLRSTQAATQVFLNVPETRVTCLENGLRVASEDSGLSTCTVGLWIDAGSRY 304
R S LRST Q +VPET+V+ L+NGLRVASE S TCTVG+WID GSRY
Sbjct: 22 RSSSLLRSPALRSTATFAQALQSVPETQVSLLDNGLRVASEQSSQPTCTVGVWIDVGSRY 81
Query: 305 ENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLP 484
E EKNNG +FLEH+AFKGTK R LE E+E+MGAHLNAY++RE T YY KA SKDLP
Sbjct: 82 ETEKNNGAGYFLEHLAFKGTKNRPGNALEKEVESMGAHLNAYSTREHTAYYIKALSKDLP 141
Query: 485 RAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTI 664
+AVE+LADI+QN +L +++IE+ER VIL+E+QE + +++VVFDYLHATA+Q T L + +
Sbjct: 142 KAVELLADIVQNCSLEDSQIEKERDVILQELQENDACMRDVVFDYLHATAFQGTPLAQAV 201
Query: 665 LGPTENIKSINRKDLVDYITTHYKGPRIVLAAAGGVSHDELLELAKFHFGD-SLSPDEGE 841
GP+ N++ ++R DL +Y++ HYK PR+VLAAAGGV H +LL+LA+ HF S + E
Sbjct: 202 EGPSGNVRKLSRADLTEYLSRHYKAPRMVLAAAGGVEHRQLLDLAQKHFSSVSETYTEDT 261
Query: 842 IPALPPCKFTGSEIRVRDDKMPLAHLAIAVEAVGWAHPDTICLMVANTLIGNWDRSFGG 1018
+P L PC+FTGSEIR RDD +PLAH+AIAVE GWA+PD + L VAN +IG++D ++GG
Sbjct: 262 VPTLAPCRFTGSEIRHRDDALPLAHVAIAVEGPGWANPDNVALQVANAIIGHYDCTYGG 320
>ref|XP_537796.1| PREDICTED: similar to mitochondrial matrix processing protease,
alpha subunit [Canis familiaris].
Length = 526
Score = 137 bits (344), Expect = 2e-32
Identities = 95/283 (33%), Positives = 151/283 (53%), Gaps = 18/283 (6%)
Frame = +2
Query: 200 ETRVTCLENGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKK-RS 376
ET+VT L+NGLRVAS++ CTVG+ I++GSRYE + +G AHFLE +AF T + S
Sbjct: 67 ETKVTTLDNGLRVASQNKFGQFCTVGILINSGSRYEAKYLSGIAHFLEKLAFSSTDRFES 126
Query: 377 QLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERER 556
+ ++ L +E G + TSR+ T+Y A SK L V +LAD++ + L + EIE R
Sbjct: 127 KDEILLTLEKHGGICDCQTSRDTTMYAVSADSKGLDTVVGLLADVVLHPRLTDKEIEMTR 186
Query: 557 GVILREMQE--VETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSINRKDLVDYITTH 730
+ E+++ + + + ++ + +H AY+ +G PTENI I+R+ L Y+ +
Sbjct: 187 MAVQFELEDLNMRPDPEPLLTEMIHEAAYRENTVGLHRFCPTENIAKIDREVLHSYLRNY 246
Query: 731 YKGPRIVLAAAGGVSHDELLELA-KFHFGDSLSPDEGEIPAL----PPCKFTGSEIRVRD 895
Y R+VLA GV H+ L+E A K+ G P G A+ ++TG +++
Sbjct: 247 YTPDRMVLAGV-GVEHEHLVECARKYLLG--TQPAWGCEKAVDVDRSVAQYTGGVVKLER 303
Query: 896 DKM----------PLAHLAIAVEAVGWAHPDTICLMVANTLIG 994
D L H+ I +E+ + D I V N ++G
Sbjct: 304 DMSNVSLGPAPFPELTHIMIGLESCSFLEEDFIPFAVLNMMMG 346
>ref|XP_536942.1| PREDICTED: similar to Ubiquinol-cytochrome-c reductase complex core
protein 2, mitochondrial precursor (Complex III subunit
II) isoform 1 [Canis familiaris].
Length = 453
Score = 90.1 bits (222), Expect = 3e-18
Identities = 73/281 (25%), Positives = 124/281 (44%)
Frame = +2
Query: 152 RLRSTQAATQVFLNVPETRVTCLENGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTA 331
++++T A V L+ + T L NGL +AS ++ +GL+I AGSRYE+ + GT+
Sbjct: 21 KVKATAAPAGVPLHPQDLEFTKLPNGLVIASLENYAPASRIGLFIKAGSRYEDSNHLGTS 80
Query: 332 HFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADI 511
H L + TK S + IE +G L+ ++RE Y + D+ +E L ++
Sbjct: 81 HLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNV 140
Query: 512 IQNSTLGEAEIERERGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKS 691
+ E+ + + + N Q V + LHA AY+N AL ++ P I
Sbjct: 141 TTSPEFRRWEVAALQSQLRIDKAVAFQNPQAHVLENLHAAAYRN-ALANSLYCPDYRIGK 199
Query: 692 INRKDLVDYITTHYKGPRIVLAAAGGVSHDELLELAKFHFGDSLSPDEGEIPALPPCKFT 871
+ +L Y+ H+ R+ L GV H L ++A+ L+ G ++
Sbjct: 200 VTPDELHYYVQNHFTSARMALIGL-GVGHPVLKQVAE----QFLNMRGGLGLPGAKARYR 254
Query: 872 GSEIRVRDDKMPLAHLAIAVEAVGWAHPDTICLMVANTLIG 994
G EIR ++ L H A+ E + V ++G
Sbjct: 255 GGEIREQNGD-SLVHAALVAEGAAIGSTEANAFSVLQYVLG 294
>ref|XP_861445.1| PREDICTED: similar to Ubiquinol-cytochrome-c reductase complex core
protein 2, mitochondrial precursor (Complex III subunit
II) isoform 3 [Canis familiaris].
Length = 167
Score = 62.8 bits (151), Expect = 5e-10
Identities = 40/126 (31%), Positives = 65/126 (51%)
Frame = +2
Query: 152 RLRSTQAATQVFLNVPETRVTCLENGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTA 331
++++T A V L+ + T L NGL +AS ++ +GL+I AGSRYE+ + GT+
Sbjct: 21 KVKATAAPAGVPLHPQDLEFTKLPNGLVIASLENYAPASRIGLFIKAGSRYEDSNHLGTS 80
Query: 332 HFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADI 511
H L + TK S + IE +G L+ ++RE Y + D V+IL +
Sbjct: 81 HLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDD----VDILMEF 136
Query: 512 IQNSTL 529
+ N +L
Sbjct: 137 LLNMSL 142
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,399,481
Number of extensions: 956150
Number of successful extensions: 3037
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3027
Number of HSP's successfully gapped: 5
Length of query: 347
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 243
Effective length of database: 15,407,560
Effective search space: 3744037080
Effective search space used: 3744037080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012736
(1043 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003130289.1| PREDICTED: mitochondrial-processing peptidas... 635 0.0
Alignment gi|XP_003361114.1| PREDICTED: mitochondrial-processing peptidas... 630 0.0
Alignment gi|XP_001926664.3| PREDICTED: cytochrome b-c1 complex subunit 1... 363 e-100
Alignment gi|XP_003362232.1| PREDICTED: mitochondrial-processing peptidas... 122 4e-28
Alignment gi|XP_003124603.2| PREDICTED: cytochrome b-c1 complex subunit 2... 90 2e-18
Alignment gi|XP_001925416.3| PREDICTED: insulin-degrading enzyme isoform ... 51 1e-06
>ref|XP_003130289.1| PREDICTED: mitochondrial-processing peptidase subunit beta [Sus
scrofa].
Length = 489
Score = 635 bits (1638), Expect = 0.0
Identities = 316/316 (100%), Positives = 316/316 (100%)
Frame = +2
Query: 71 VRKRLWGFSKRLLVGGPARQSLYFGGNRLRSTQAATQVFLNVPETRVTCLENGLRVASED 250
VRKRLWGFSKRLLVGGPARQSLYFGGNRLRSTQAATQVFLNVPETRVTCLENGLRVASED
Sbjct: 14 VRKRLWGFSKRLLVGGPARQSLYFGGNRLRSTQAATQVFLNVPETRVTCLENGLRVASED 73
Query: 251 SGLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAY 430
SGLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAY
Sbjct: 74 SGLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAY 133
Query: 431 TSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQEVV 610
TSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQEVV
Sbjct: 134 TSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQEVV 193
Query: 611 FDYLHATAYQNTALGRTILGPTENIKSINRKDLVDYITTHYKGPRIVLAAAGGVSHDELL 790
FDYLHATAYQNTALGRTILGPTENIKSINRKDLVDYITTHYKGPRIVLAAAGGVSHDELL
Sbjct: 194 FDYLHATAYQNTALGRTILGPTENIKSINRKDLVDYITTHYKGPRIVLAAAGGVSHDELL 253
Query: 791 ELAKFHFGDSLSPDEGEIPALPPCKFTGSEIRVRDDKMPLAHLAIAVEAVGWAHPDTICL 970
ELAKFHFGDSLSPDEGEIPALPPCKFTGSEIRVRDDKMPLAHLAIAVEAVGWAHPDTICL
Sbjct: 254 ELAKFHFGDSLSPDEGEIPALPPCKFTGSEIRVRDDKMPLAHLAIAVEAVGWAHPDTICL 313
Query: 971 MVANTLIGNWDRSFGG 1018
MVANTLIGNWDRSFGG
Sbjct: 314 MVANTLIGNWDRSFGG 329
>ref|XP_003361114.1| PREDICTED: mitochondrial-processing peptidase subunit beta-like [Sus
scrofa].
Length = 573
Score = 630 bits (1625), Expect = 0.0
Identities = 313/314 (99%), Positives = 314/314 (100%)
Frame = +2
Query: 77 KRLWGFSKRLLVGGPARQSLYFGGNRLRSTQAATQVFLNVPETRVTCLENGLRVASEDSG 256
+RLWGFSKRLLVGGPARQSLYFGGNRLRSTQAATQVFLNVPETRVTCLENGLRVASEDSG
Sbjct: 100 QRLWGFSKRLLVGGPARQSLYFGGNRLRSTQAATQVFLNVPETRVTCLENGLRVASEDSG 159
Query: 257 LSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTS 436
LSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTS
Sbjct: 160 LSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTS 219
Query: 437 REQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQEVVFD 616
REQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQEVVFD
Sbjct: 220 REQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQEVVFD 279
Query: 617 YLHATAYQNTALGRTILGPTENIKSINRKDLVDYITTHYKGPRIVLAAAGGVSHDELLEL 796
YLHATAYQNTALGRTILGPTENIKSINRKDLVDYITTHYKGPRIVLAAAGGVSHDELLEL
Sbjct: 280 YLHATAYQNTALGRTILGPTENIKSINRKDLVDYITTHYKGPRIVLAAAGGVSHDELLEL 339
Query: 797 AKFHFGDSLSPDEGEIPALPPCKFTGSEIRVRDDKMPLAHLAIAVEAVGWAHPDTICLMV 976
AKFHFGDSLSPDEGEIPALPPCKFTGSEIRVRDDKMPLAHLAIAVEAVGWAHPDTICLMV
Sbjct: 340 AKFHFGDSLSPDEGEIPALPPCKFTGSEIRVRDDKMPLAHLAIAVEAVGWAHPDTICLMV 399
Query: 977 ANTLIGNWDRSFGG 1018
ANTLIGNWDRSFGG
Sbjct: 400 ANTLIGNWDRSFGG 413
>ref|XP_001926664.3| PREDICTED: cytochrome b-c1 complex subunit 1, mitochondrial [Sus
scrofa].
Length = 480
Score = 363 bits (931), Expect = e-100
Identities = 175/290 (60%), Positives = 230/290 (79%), Gaps = 2/290 (0%)
Frame = +2
Query: 155 LRSTQAATQVFLNVPETRVTCLENGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTAH 334
LR T Q +VPET+V+ L+NGLRVASE S TCTVG+WIDAGSRYENEKNNG +
Sbjct: 32 LRGTATYAQALQSVPETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYENEKNNGAGY 91
Query: 335 FLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADII 514
F+EH+AFKGTK R LE E+E+MGAHLNAY++RE T YY KA SKDLP+AVE+LADI+
Sbjct: 92 FVEHLAFKGTKNRPGSALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIV 151
Query: 515 QNSTLGEAEIERERGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSI 694
QN +L +++IE+ER VIL+E+QE ++++++VVFDYLHATA+Q T L +++ GP+EN++ +
Sbjct: 152 QNCSLEDSQIEKERDVILQELQENDSSMRDVVFDYLHATAFQGTPLAQSVEGPSENVRKL 211
Query: 695 NRKDLVDYITTHYKGPRIVLAAAGGVSHDELLELAKFHFGDSLSPD--EGEIPALPPCKF 868
+R DL +Y++ HYK PR+VLAAAGGV H +LL+LA+ HF SLS E +PA PC+F
Sbjct: 212 SRADLTEYVSQHYKAPRMVLAAAGGVEHRQLLDLAQKHF-SSLSGTYVEDAVPAFTPCRF 270
Query: 869 TGSEIRVRDDKMPLAHLAIAVEAVGWAHPDTICLMVANTLIGNWDRSFGG 1018
TGSEIR RDD +PLAH+AIAVE GWA+PD + L VAN +IG++D ++GG
Sbjct: 271 TGSEIRHRDDALPLAHVAIAVEGPGWANPDNVPLQVANAIIGHYDSTYGG 320
>ref|XP_003362232.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like
[Sus scrofa].
Length = 395
Score = 122 bits (305), Expect = 4e-28
Identities = 73/204 (35%), Positives = 117/204 (57%), Gaps = 1/204 (0%)
Frame = +2
Query: 200 ETRVTCLENGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKK-RS 376
ET+VT L+NGLRVAS++ C + + I++GSRYE + +G AHFLE +AF T + S
Sbjct: 45 ETKVTTLDNGLRVASQNKFGQFCLLPVLINSGSRYEAKYLSGIAHFLEKLAFSSTDRFAS 104
Query: 377 QLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERER 556
+ ++ L +E G + TSR+ T+Y A SK L V +LAD++ + L + E+E R
Sbjct: 105 KDEILLTLEKHGGICDCQTSRDTTMYAVSANSKGLDTVVGLLADVVLHPRLTDEELEMTR 164
Query: 557 GVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSINRKDLVDYITTHYK 736
+ E++++ N++ + +H + L L P EN+ ++R +L Y+ +Y
Sbjct: 165 MAVQFELEDL--NMRPDPXEMIHQVTWARATLSLQRLCPAENVAKMDRAELHAYLRNYYT 222
Query: 737 GPRIVLAAAGGVSHDELLELAKFH 808
R+VLAA GV H L+E A+ H
Sbjct: 223 PDRMVLAAV-GVEHQHLVECARKH 245
>ref|XP_003124603.2| PREDICTED: cytochrome b-c1 complex subunit 2, mitochondrial-like
[Sus scrofa].
Length = 453
Score = 90.1 bits (222), Expect = 2e-18
Identities = 75/278 (26%), Positives = 121/278 (43%)
Frame = +2
Query: 161 STQAATQVFLNVPETRVTCLENGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTAHFL 340
++ A V L + T L NGL +AS ++ +GL+I AGSRYE+ N GT+H L
Sbjct: 24 ASAAPAGVPLQPQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYEDSNNLGTSHLL 83
Query: 341 EHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQN 520
+ TK S + IE +G L+ ++RE Y + D+ +E L ++
Sbjct: 84 RLASSLTTKGASSFKITRGIEAVGGKLSVTSTRESMAYTVECLRDDIEILMEFLLNVTAA 143
Query: 521 STLGEAEIERERGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSINR 700
E+ + + + N Q V + LHA AY+N AL ++ P I +
Sbjct: 144 PEFRRWEVAALQSQLRIDKAVAFQNPQAQVLENLHAAAYRN-ALANSLYCPDYRIGKVTP 202
Query: 701 KDLVDYITTHYKGPRIVLAAAGGVSHDELLELAKFHFGDSLSPDEGEIPALPPCKFTGSE 880
L Y+ H+ R+ L GVSH L ++A+ L+ G + K+ G E
Sbjct: 203 DQLHYYVQNHFTSARMALIGL-GVSHPVLKQVAE----RFLNMRGGLGLSGAKAKYRGGE 257
Query: 881 IRVRDDKMPLAHLAIAVEAVGWAHPDTICLMVANTLIG 994
IR ++ L H A+ E+ + V ++G
Sbjct: 258 IRDQNGD-SLVHAALVAESAATGSAEANAFSVLQHVLG 294
>ref|XP_001925416.3| PREDICTED: insulin-degrading enzyme isoform 1 [Sus scrofa].
Length = 1019
Score = 50.8 bits (120), Expect = 1e-06
Identities = 56/232 (24%), Positives = 91/232 (39%), Gaps = 9/232 (3%)
Frame = +2
Query: 218 LENGLRVAS-EDSGLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKK-RSQLDLE 391
L NG++V D + L + GS + G +HF EHM F GTKK + +
Sbjct: 69 LANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFCEHMLFLGTKKYPKENEYS 128
Query: 392 LEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILR 571
+ NA+TS E T YY + L A++ A E+ +RE +
Sbjct: 129 QFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLCPLFDESCKDREVNAVDS 188
Query: 572 EMQEVETNLQEVVFDYLHATAYQNTAL------GRTILGPTENIKSIN-RKDLVDYITTH 730
E ++ N +F AT N + L N + I+ R++L+ + +T+
Sbjct: 189 EHEKNVMNDAWRLFQLEKATGNPNHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSTY 248
Query: 731 YKGPRIVLAAAGGVSHDELLELAKFHFGDSLSPDEGEIPALPPCKFTGSEIR 886
Y + + G S D+L L F + + +P P F +R
Sbjct: 249 YSSNLMAICVLGRESLDDLTNLVVKLFSE-VENKNVPLPEFPEHPFQEEHLR 299
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,231,713
Number of extensions: 592394
Number of successful extensions: 1716
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1709
Number of HSP's successfully gapped: 6
Length of query: 347
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 247
Effective length of database: 8,854,232
Effective search space: 2186995304
Effective search space used: 2186995304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012736
(1043 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_082707.1| mitochondrial-processing peptidase subunit beta... 586 e-167
Alignment gi|NP_079683.2| cytochrome b-c1 complex subunit 1, mitochondria... 361 e-100
Alignment gi|NP_775272.1| mitochondrial-processing peptidase subunit alph... 134 9e-32
Alignment gi|NP_080175.1| cytochrome b-c1 complex subunit 2, mitochondria... 93 3e-19
>ref|NP_082707.1| mitochondrial-processing peptidase subunit beta precursor [Mus
musculus].
Length = 489
Score = 586 bits (1510), Expect = e-167
Identities = 292/315 (92%), Positives = 302/315 (95%)
Frame = +2
Query: 74 RKRLWGFSKRLLVGGPARQSLYFGGNRLRSTQAATQVFLNVPETRVTCLENGLRVASEDS 253
R+RLWGF++RL + A Q LYFGG+RLRSTQAA QV LNVPET+VTCLENGLRVASE+S
Sbjct: 15 RRRLWGFTRRLPLRRAAAQPLYFGGDRLRSTQAAPQVVLNVPETQVTCLENGLRVASENS 74
Query: 254 GLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYT 433
GLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYT
Sbjct: 75 GLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYT 134
Query: 434 SREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQEVVF 613
SREQTVYYAKAFS+DLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQEVVF
Sbjct: 135 SREQTVYYAKAFSRDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQEVVF 194
Query: 614 DYLHATAYQNTALGRTILGPTENIKSINRKDLVDYITTHYKGPRIVLAAAGGVSHDELLE 793
DYLHATAYQNTALGRTILGPTENIKSINRKDLVDYITTHYKGPRIVLAAAGGV H+ELLE
Sbjct: 195 DYLHATAYQNTALGRTILGPTENIKSINRKDLVDYITTHYKGPRIVLAAAGGVCHNELLE 254
Query: 794 LAKFHFGDSLSPDEGEIPALPPCKFTGSEIRVRDDKMPLAHLAIAVEAVGWAHPDTICLM 973
LAKFHFGDSL +G IPALPPCKFTGSEIRVRDDKMPLAHLAIAVEAVGWAHPDTICLM
Sbjct: 255 LAKFHFGDSLCSHKGAIPALPPCKFTGSEIRVRDDKMPLAHLAIAVEAVGWAHPDTICLM 314
Query: 974 VANTLIGNWDRSFGG 1018
VANTLIGNWDRSFGG
Sbjct: 315 VANTLIGNWDRSFGG 329
>ref|NP_079683.2| cytochrome b-c1 complex subunit 1, mitochondrial precursor [Mus
musculus].
Length = 480
Score = 361 bits (926), Expect = e-100
Identities = 174/289 (60%), Positives = 223/289 (77%), Gaps = 1/289 (0%)
Frame = +2
Query: 155 LRSTQAATQVFLNVPETRVTCLENGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTAH 334
LR T Q +VPET+V+ L+NGLRVASE S +TCTVG+WIDAGSRYE EKNNG +
Sbjct: 32 LRGTATFAQALQSVPETQVSILDNGLRVASEQSSHATCTVGVWIDAGSRYETEKNNGAGY 91
Query: 335 FLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADII 514
FLEH+AFKGTK R LE E+E++GAHLNAY++RE T Y KA SKDLP+ VE+LADI+
Sbjct: 92 FLEHLAFKGTKNRPGNALEKEVESIGAHLNAYSTREHTAYLIKALSKDLPKVVELLADIV 151
Query: 515 QNSTLGEAEIERERGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSI 694
QNS+L +++IE+ER VILREMQE + ++Q VVFDYLHATA+Q T L + + GP+EN++ +
Sbjct: 152 QNSSLEDSQIEKERDVILREMQENDASMQNVVFDYLHATAFQGTPLAQAVEGPSENVRRL 211
Query: 695 NRKDLVDYITTHYKGPRIVLAAAGGVSHDELLELAKFHFGD-SLSPDEGEIPALPPCKFT 871
+R DL DY+ HYK PR+VLAAAGGV H +LL+LA+ H S +E +P L PC+FT
Sbjct: 212 SRTDLTDYLNRHYKAPRMVLAAAGGVEHQQLLDLAQKHLSSVSRVYEEDAVPGLTPCRFT 271
Query: 872 GSEIRVRDDKMPLAHLAIAVEAVGWAHPDTICLMVANTLIGNWDRSFGG 1018
GSEIR RDD +PLAH+AIAVE GWA+PD + L VAN +IG++D ++GG
Sbjct: 272 GSEIRHRDDALPLAHVAIAVEGPGWANPDNVTLQVANAIIGHYDCTYGG 320
>ref|NP_775272.1| mitochondrial-processing peptidase subunit alpha precursor [Mus
musculus].
Length = 524
Score = 134 bits (338), Expect = 9e-32
Identities = 90/282 (31%), Positives = 151/282 (53%), Gaps = 17/282 (6%)
Frame = +2
Query: 200 ETRVTCLENGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKK-RS 376
ET+VT L+NGLRVAS++ CTVG+ I++GSRYE + +G AHFLE +AF T + S
Sbjct: 65 ETKVTTLDNGLRVASQNKFGQFCTVGILINSGSRYEAKYLSGIAHFLEKLAFSSTARFDS 124
Query: 377 QLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERER 556
+ ++ L +E G + TSR+ T+Y A SK L V++LAD++ + L + EIE R
Sbjct: 125 KDEILLTLEKHGGICDCQTSRDTTMYAVSADSKGLDTVVDLLADVVLHPRLTDEEIEMTR 184
Query: 557 GVILREMQE--VETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSINRKDLVDYITTH 730
+ E+++ + + + ++ + +H A++ +G P ENI I+R+ L Y+ +
Sbjct: 185 MAVQFELEDLNMRPDPEPLLTEMIHEAAFRENTVGLHRFCPVENIAKIDREVLHSYLKNY 244
Query: 731 YKGPRIVLAAAGGVSHDELLELAKFHFGDSL----SPDEGEIPALPPCKFTGSEIRVRDD 898
Y R+VLA GV H+ L+E A+ + + +P ++ ++TG I+V D
Sbjct: 245 YTPDRMVLAGV-GVEHEHLVECARKYLVGAEPAWGAPGTVDVDR-SVAQYTGGIIKVERD 302
Query: 899 KM----------PLAHLAIAVEAVGWAHPDTICLMVANTLIG 994
L H+ + +E+ + D I V N ++G
Sbjct: 303 MSNVSLGPTPIPELTHIMVGLESCSFLEDDFIPFAVLNMMMG 344
>ref|NP_080175.1| cytochrome b-c1 complex subunit 2, mitochondrial precursor [Mus
musculus].
Length = 453
Score = 93.2 bits (230), Expect = 3e-19
Identities = 75/281 (26%), Positives = 124/281 (44%)
Frame = +2
Query: 152 RLRSTQAATQVFLNVPETRVTCLENGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTA 331
+++++ A V L + T L NGL +AS ++ +GL++ AGSRYE+ N GT+
Sbjct: 21 KVKTSAAPGGVPLQPQDLEFTKLPNGLVIASLENYAPLSRIGLFVKAGSRYEDSNNLGTS 80
Query: 332 HFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADI 511
H L + TK S + IE +G L+ +RE Y + D+ +E L ++
Sbjct: 81 HLLRLASSLTTKGASSFKITRGIEAVGGKLSVTATRENMAYTVEGIRSDIEILMEFLLNV 140
Query: 512 IQNSTLGEAEIERERGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKS 691
E+ R + + N Q + + LH AY+N AL + P +
Sbjct: 141 TTAPEFRRWEVAALRSQLKIDKAVAFQNSQTRIIENLHDVAYKN-ALANPLYCPDYRMGK 199
Query: 692 INRKDLVDYITTHYKGPRIVLAAAGGVSHDELLELAKFHFGDSLSPDEGEIPALPPCKFT 871
I ++L ++ H+ R+ L GVSH L ++A+ L+ G A K+
Sbjct: 200 ITSEELHYFVQNHFTSARMALVGL-GVSHSVLKQVAE----QFLNMRGGLGLAGAKAKYR 254
Query: 872 GSEIRVRDDKMPLAHLAIAVEAVGWAHPDTICLMVANTLIG 994
G EIR ++ L H AI E+ + + V L+G
Sbjct: 255 GGEIREQNGD-NLVHAAIVAESAAIGNAEANAFSVLQHLLG 294
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,247,860
Number of extensions: 819779
Number of successful extensions: 2378
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2372
Number of HSP's successfully gapped: 4
Length of query: 347
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 245
Effective length of database: 12,553,887
Effective search space: 3075702315
Effective search space used: 3075702315
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012736
(1043 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004270.2| mitochondrial-processing peptidase subunit beta... 598 e-171
Alignment gi|NP_003356.2| cytochrome b-c1 complex subunit 1, mitochondria... 357 1e-98
Alignment gi|NP_055975.1| mitochondrial-processing peptidase subunit alph... 137 2e-32
Alignment gi|NP_003357.2| cytochrome b-c1 complex subunit 2, mitochondria... 81 1e-15
>ref|NP_004270.2| mitochondrial-processing peptidase subunit beta precursor [Homo
sapiens].
Length = 489
Score = 598 bits (1541), Expect = e-171
Identities = 298/315 (94%), Positives = 306/315 (97%)
Frame = +2
Query: 74 RKRLWGFSKRLLVGGPARQSLYFGGNRLRSTQAATQVFLNVPETRVTCLENGLRVASEDS 253
R+RLWGFS+ LL+ G A +SLYFG NRLRSTQAATQV LNVPETRVTCLE+GLRVASEDS
Sbjct: 15 RRRLWGFSESLLIRGAAGRSLYFGENRLRSTQAATQVVLNVPETRVTCLESGLRVASEDS 74
Query: 254 GLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYT 433
GLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYT
Sbjct: 75 GLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYT 134
Query: 434 SREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQEVVF 613
SREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQEVVF
Sbjct: 135 SREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQEVVF 194
Query: 614 DYLHATAYQNTALGRTILGPTENIKSINRKDLVDYITTHYKGPRIVLAAAGGVSHDELLE 793
DYLHATAYQNTALGRTILGPTENIKSI+RKDLVDYITTHYKGPRIVLAAAGGVSHDELL+
Sbjct: 195 DYLHATAYQNTALGRTILGPTENIKSISRKDLVDYITTHYKGPRIVLAAAGGVSHDELLD 254
Query: 794 LAKFHFGDSLSPDEGEIPALPPCKFTGSEIRVRDDKMPLAHLAIAVEAVGWAHPDTICLM 973
LAKFHFGDSL +GEIPALPPCKFTGSEIRVRDDKMPLAHLAIAVEAVGWAHPDTICLM
Sbjct: 255 LAKFHFGDSLCTHKGEIPALPPCKFTGSEIRVRDDKMPLAHLAIAVEAVGWAHPDTICLM 314
Query: 974 VANTLIGNWDRSFGG 1018
VANTLIGNWDRSFGG
Sbjct: 315 VANTLIGNWDRSFGG 329
>ref|NP_003356.2| cytochrome b-c1 complex subunit 1, mitochondrial precursor [Homo
sapiens].
Length = 480
Score = 357 bits (916), Expect = 1e-98
Identities = 171/289 (59%), Positives = 222/289 (76%), Gaps = 1/289 (0%)
Frame = +2
Query: 155 LRSTQAATQVFLNVPETRVTCLENGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTAH 334
LRST Q VPET+V+ L+NGLRVASE S TCTVG+WID GSR+E EKNNG +
Sbjct: 32 LRSTATFAQALQFVPETQVSLLDNGLRVASEQSSQPTCTVGVWIDVGSRFETEKNNGAGY 91
Query: 335 FLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADII 514
FLEH+AFKGTK R LE E+E+MGAHLNAY++RE T YY KA SKDLP+AVE+L DI+
Sbjct: 92 FLEHLAFKGTKNRPGSALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLGDIV 151
Query: 515 QNSTLGEAEIERERGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSI 694
QN +L +++IE+ER VILREMQE + ++++VVF+YLHATA+Q T L + + GP+EN++ +
Sbjct: 152 QNCSLEDSQIEKERDVILREMQENDASMRDVVFNYLHATAFQGTPLAQAVEGPSENVRKL 211
Query: 695 NRKDLVDYITTHYKGPRIVLAAAGGVSHDELLELAKFHFGD-SLSPDEGEIPALPPCKFT 871
+R DL +Y++THYK PR+VLAAAGGV H +LL+LA+ H G + E +P L PC+FT
Sbjct: 212 SRADLTEYLSTHYKAPRMVLAAAGGVEHQQLLDLAQKHLGGIPWTYAEDAVPTLTPCRFT 271
Query: 872 GSEIRVRDDKMPLAHLAIAVEAVGWAHPDTICLMVANTLIGNWDRSFGG 1018
GSEIR RDD +P AH+AIAVE GWA PD + L VAN +IG++D ++GG
Sbjct: 272 GSEIRHRDDALPFAHVAIAVEGPGWASPDNVALQVANAIIGHYDCTYGG 320
>ref|NP_055975.1| mitochondrial-processing peptidase subunit alpha precursor [Homo
sapiens].
Length = 525
Score = 137 bits (345), Expect = 2e-32
Identities = 105/332 (31%), Positives = 166/332 (50%), Gaps = 29/332 (8%)
Frame = +2
Query: 86 WGFSKRLLVGGPARQSLYFGGNRLRSTQAAT------QVFLNVP-----ETRVTCLENGL 232
WG S RL G PA + GG ++ VF V ET+VT L+NGL
Sbjct: 18 WGCS-RLRFGPPAYRRFSSGGAYPNIPLSSPLPGVPKPVFATVDGQEKFETKVTTLDNGL 76
Query: 233 RVASEDSGLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKK-RSQLDLELEIENM 409
RVAS++ CTVG+ I++GSRYE + +G AHFLE +AF T + S+ ++ L +E
Sbjct: 77 RVASQNKFGQFCTVGILINSGSRYEAKYLSGIAHFLEKLAFSSTARFDSKDEILLTLEKH 136
Query: 410 GAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILREMQE-- 583
G + TSR+ T+Y A SK L V +LAD++ L + E+E R + E+++
Sbjct: 137 GGICDCQTSRDTTMYAVSADSKGLDTVVALLADVVLQPRLTDEEVEMTRMAVQFELEDLN 196
Query: 584 VETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSINRKDLVDYITTHYKGPRIVLAAA 763
+ + + ++ + +H AY+ +G PTEN+ INR+ L Y+ +Y R+VLA
Sbjct: 197 LRPDPEPLLTEMIHEAAYRENTVGLHRFCPTENVAKINREVLHSYLRNYYTPDRMVLAGV 256
Query: 764 GGVSHDELLELA-KFHFGDSLSPDEGEIPAL----PPCKFTGSEIRVRDDKM-------- 904
GV H+ L++ A K+ G + P G A+ ++TG ++ D
Sbjct: 257 -GVEHEHLVDCARKYLLG--VQPAWGSAEAVDIDRSVAQYTGGIAKLERDMSNVSLGPTP 313
Query: 905 --PLAHLAIAVEAVGWAHPDTICLMVANTLIG 994
L H+ + +E+ + D I V N ++G
Sbjct: 314 IPELTHIMVGLESCSFLEEDFIPFAVLNMMMG 345
>ref|NP_003357.2| cytochrome b-c1 complex subunit 2, mitochondrial precursor [Homo
sapiens].
Length = 453
Score = 81.3 bits (199), Expect = 1e-15
Identities = 70/262 (26%), Positives = 114/262 (43%)
Frame = +2
Query: 152 RLRSTQAATQVFLNVPETRVTCLENGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTA 331
++++T A + T L NGL +AS ++ +GL+I AGSRYE+ N GT
Sbjct: 21 KVKATAAPAGAPPQPQDLEFTKLPNGLVIASLENYSPVSRIGLFIKAGSRYEDFSNLGTT 80
Query: 332 HFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADI 511
H L + TK S + IE +G L+ +RE Y + D+ +E L ++
Sbjct: 81 HLLRLTSSLTTKGASSFKITRGIEAVGGKLSVTATRENMAYTVECLRGDVDILMEFLLNV 140
Query: 512 IQNSTLGEAEIERERGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKS 691
E+ + + + N Q V + LHA AY+N AL + P I
Sbjct: 141 TTAPEFRRWEVADLQPQLKIDKAVAFQNPQTHVIENLHAAAYRN-ALANPLYCPDYRIGK 199
Query: 692 INRKDLVDYITTHYKGPRIVLAAAGGVSHDELLELAKFHFGDSLSPDEGEIPALPPCKFT 871
+ ++L ++ H+ R+ L GVSH L ++A+ L+ G + +
Sbjct: 200 VTSEELHYFVQNHFTSARMALIGL-GVSHPVLKQVAE----QFLNMRGGLGLSGAKANYR 254
Query: 872 GSEIRVRDDKMPLAHLAIAVEA 937
G EIR ++ L H A E+
Sbjct: 255 GGEIREQNGD-SLVHAAFVAES 275
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,859,790
Number of extensions: 957180
Number of successful extensions: 2874
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2866
Number of HSP's successfully gapped: 4
Length of query: 347
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 244
Effective length of database: 14,901,872
Effective search space: 3636056768
Effective search space used: 3636056768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012736
(1043 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL893533.2| Sus scrofa unplaced genomic scaffold ChrUScaf1418 398 e-108
Sscrofa_Chr09 398 e-108
Sscrofa_Chr08 371 e-100
>gb|GL893533.2| Sus scrofa unplaced genomic scaffold ChrUScaf1418
Length = 96275
Score = 398 bits (201), Expect = e-108
Identities = 201/201 (100%)
Strand = Plus / Plus
Query: 487 agctgtagaaattcttgctgatataatacaaaacagcacattgggagaagcagagattga 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20388 agctgtagaaattcttgctgatataatacaaaacagcacattgggagaagcagagattga 20447
Query: 547 acgtgaacgtggagtgatccttagagagatgcaggaagtcgaaaccaatttacaggaagt 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20448 acgtgaacgtggagtgatccttagagagatgcaggaagtcgaaaccaatttacaggaagt 20507
Query: 607 tgtttttgattatcttcatgccacagcttatcaaaatactgcacttggacggacaatttt 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20508 tgtttttgattatcttcatgccacagcttatcaaaatactgcacttggacggacaatttt 20567
Query: 667 gggaccaactgaaaatatcaa 687
|||||||||||||||||||||
Sbjct: 20568 gggaccaactgaaaatatcaa 20588
Score = 289 bits (146), Expect = 2e-75
Identities = 146/146 (100%)
Strand = Plus / Plus
Query: 128 cagtcattatattttggaggaaacagattgagaagtacacaggctgctacacaagttttt 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15309 cagtcattatattttggaggaaacagattgagaagtacacaggctgctacacaagttttt 15368
Query: 188 ctgaatgttcctgaaacgagagtaacctgtttggagaacggactcagagtggcctctgaa 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15369 ctgaatgttcctgaaacgagagtaacctgtttggagaacggactcagagtggcctctgaa 15428
Query: 248 gactctgggctctcaacatgcacagt 273
||||||||||||||||||||||||||
Sbjct: 15429 gactctgggctctcaacatgcacagt 15454
Score = 272 bits (137), Expect = 4e-70
Identities = 140/141 (99%)
Strand = Plus / Plus
Query: 879 agatccgagtgagggatgacaagatgcctttggcacaccttgccatagctgttgaagctg 938
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 24772 agatccgagtgagggatgacaagatgcctttggcacaccttgcaatagctgttgaagctg 24831
Query: 939 tcggttgggcacatccagatacaatctgtctcatggttgcaaacacattgattggcaact 998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24832 tcggttgggcacatccagatacaatctgtctcatggttgcaaacacattgattggcaact 24891
Query: 999 gggatcgctcctttggaggag 1019
|||||||||||||||||||||
Sbjct: 24892 gggatcgctcctttggaggag 24912
Score = 262 bits (132), Expect = 3e-67
Identities = 132/132 (100%)
Strand = Plus / Plus
Query: 357 agggcaccaaaaagagatcccagttagatttggaacttgagattgaaaacatgggtgctc 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16643 agggcaccaaaaagagatcccagttagatttggaacttgagattgaaaacatgggtgctc 16702
Query: 417 atctcaatgcctatacctccagagagcagactgtatattatgccaaagcattctctaaag 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16703 atctcaatgcctatacctccagagagcagactgtatattatgccaaagcattctctaaag 16762
Query: 477 atttgccaagag 488
||||||||||||
Sbjct: 16763 atttgccaagag 16774
Score = 228 bits (115), Expect = 5e-57
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 766 aggagtttcccatgatgaactgcttgaattggcgaagtttcattttggtgactctttgtc 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23805 aggagtttcccatgatgaactgcttgaattggcgaagtttcattttggtgactctttgtc 23864
Query: 826 cccagacgaaggagaaataccagctctgcctccctgcaaattcacaggaagtgag 880
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23865 cccagacgaaggagaaataccagctctgcctccctgcaaattcacaggaagtgag 23919
Score = 174 bits (88), Expect = 6e-41
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 272 gttgggctttggattgatgctgggagtcgatatgaaaatgagaagaataatggaacagct 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16181 gttgggctttggattgatgctgggagtcgatatgaaaatgagaagaataatggaacagct 16240
Query: 332 cactttctggaacatatggctttcaagg 359
||||||||||||||||||||||||||||
Sbjct: 16241 cactttctggaacatatggctttcaagg 16268
Score = 161 bits (81), Expect = 9e-37
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 688 atctataaatcgtaaggacttagtcgattatataaccacacattataagggaccaagaat 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21113 atctataaatcgtaaggacttagtcgattatataaccacacattataagggaccaagaat 21172
Query: 748 agttcttgctgctgctggagg 768
|||||||||||||||||||||
Sbjct: 21173 agttcttgctgctgctggagg 21193
Score = 107 bits (54), Expect = 1e-20
Identities = 54/54 (100%)
Strand = Plus / Plus
Query: 77 aagcggctctggggtttctccaagaggctcttggtcggaggccctgcaaggcag 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14197 aagcggctctggggtttctccaagaggctcttggtcggaggccctgcaaggcag 14250
>Sscrofa_Chr09
|| Length = 153670197
Score = 398 bits (201), Expect = e-108
Identities = 201/201 (100%)
Strand = Plus / Plus
Query: 487 agctgtagaaattcttgctgatataatacaaaacagcacattgggagaagcagagattga 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113930712 agctgtagaaattcttgctgatataatacaaaacagcacattgggagaagcagagattga 113930771
Query: 547 acgtgaacgtggagtgatccttagagagatgcaggaagtcgaaaccaatttacaggaagt 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113930772 acgtgaacgtggagtgatccttagagagatgcaggaagtcgaaaccaatttacaggaagt 113930831
Query: 607 tgtttttgattatcttcatgccacagcttatcaaaatactgcacttggacggacaatttt 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113930832 tgtttttgattatcttcatgccacagcttatcaaaatactgcacttggacggacaatttt 113930891
Query: 667 gggaccaactgaaaatatcaa 687
|||||||||||||||||||||
Sbjct: 113930892 gggaccaactgaaaatatcaa 113930912
Score = 289 bits (146), Expect = 2e-75
Identities = 146/146 (100%)
Strand = Plus / Plus
Query: 128 cagtcattatattttggaggaaacagattgagaagtacacaggctgctacacaagttttt 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113925807 cagtcattatattttggaggaaacagattgagaagtacacaggctgctacacaagttttt 113925866
Query: 188 ctgaatgttcctgaaacgagagtaacctgtttggagaacggactcagagtggcctctgaa 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113925867 ctgaatgttcctgaaacgagagtaacctgtttggagaacggactcagagtggcctctgaa 113925926
Query: 248 gactctgggctctcaacatgcacagt 273
||||||||||||||||||||||||||
Sbjct: 113925927 gactctgggctctcaacatgcacagt 113925952
Score = 272 bits (137), Expect = 4e-70
Identities = 140/141 (99%)
Strand = Plus / Plus
Query: 879 agatccgagtgagggatgacaagatgcctttggcacaccttgccatagctgttgaagctg 938
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 113935403 agatccgagtgagggatgacaagatgcctttggcacaccttgcaatagctgttgaagctg 113935462
Query: 939 tcggttgggcacatccagatacaatctgtctcatggttgcaaacacattgattggcaact 998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113935463 tcggttgggcacatccagatacaatctgtctcatggttgcaaacacattgattggcaact 113935522
Query: 999 gggatcgctcctttggaggag 1019
|||||||||||||||||||||
Sbjct: 113935523 gggatcgctcctttggaggag 113935543
Score = 262 bits (132), Expect = 3e-67
Identities = 132/132 (100%)
Strand = Plus / Plus
Query: 357 agggcaccaaaaagagatcccagttagatttggaacttgagattgaaaacatgggtgctc 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113927141 agggcaccaaaaagagatcccagttagatttggaacttgagattgaaaacatgggtgctc 113927200
Query: 417 atctcaatgcctatacctccagagagcagactgtatattatgccaaagcattctctaaag 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113927201 atctcaatgcctatacctccagagagcagactgtatattatgccaaagcattctctaaag 113927260
Query: 477 atttgccaagag 488
||||||||||||
Sbjct: 113927261 atttgccaagag 113927272
Score = 256 bits (129), Expect = 2e-65
Identities = 129/129 (100%)
Strand = Plus / Plus
Query: 2 aacacatccctcacactgtccagagcggagatggcggcggcggcggcccgagcggtgttt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113924698 aacacatccctcacactgtccagagcggagatggcggcggcggcggcccgagcggtgttt 113924757
Query: 62 ttgcccgcggtgcggaagcggctctggggtttctccaagaggctcttggtcggaggccct 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113924758 ttgcccgcggtgcggaagcggctctggggtttctccaagaggctcttggtcggaggccct 113924817
Query: 122 gcaaggcag 130
|||||||||
Sbjct: 113924818 gcaaggcag 113924826
Score = 228 bits (115), Expect = 5e-57
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 766 aggagtttcccatgatgaactgcttgaattggcgaagtttcattttggtgactctttgtc 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113934436 aggagtttcccatgatgaactgcttgaattggcgaagtttcattttggtgactctttgtc 113934495
Query: 826 cccagacgaaggagaaataccagctctgcctccctgcaaattcacaggaagtgag 880
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113934496 cccagacgaaggagaaataccagctctgcctccctgcaaattcacaggaagtgag 113934550
Score = 174 bits (88), Expect = 6e-41
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 272 gttgggctttggattgatgctgggagtcgatatgaaaatgagaagaataatggaacagct 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113926679 gttgggctttggattgatgctgggagtcgatatgaaaatgagaagaataatggaacagct 113926738
Query: 332 cactttctggaacatatggctttcaagg 359
||||||||||||||||||||||||||||
Sbjct: 113926739 cactttctggaacatatggctttcaagg 113926766
Score = 161 bits (81), Expect = 9e-37
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 688 atctataaatcgtaaggacttagtcgattatataaccacacattataagggaccaagaat 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113931377 atctataaatcgtaaggacttagtcgattatataaccacacattataagggaccaagaat 113931436
Query: 748 agttcttgctgctgctggagg 768
|||||||||||||||||||||
Sbjct: 113931437 agttcttgctgctgctggagg 113931457
>Sscrofa_Chr08
|| Length = 148491826
Score = 371 bits (187), Expect = e-100
Identities = 571/697 (81%), Gaps = 14/697 (2%)
Strand = Plus / Plus
Query: 130 gtcattatattttggaggaaacagattgagaagtacacaggctgctacacaagtttttct 189
|||| |||| ||||||| |||||| |||||| | ||||||| |||| |||| || |||
Sbjct: 43866789 gtcactataatttggagacaacagagtgagaaatgcacaggccgctatacaaattgctct 43866848
Query: 190 gaatgttcctgaaacgagagtaacctgtttggagaacggactcagagtggcctctgaaga 249
||||||||||||||| | ||||| |||||||| || | |||||||||| |||||||| |
Sbjct: 43866849 gaatgttcctgaaacatgggtaacatgtttggaaaatgaactcagagtgccctctgaaaa 43866908
Query: 250 ctctgggctctcaacatgcacagttgggctttggattgatgctgggagtcgatatgaaaa 309
|||||| | |||| ||||||||| || |||||||||||| | | | |||| |||||
Sbjct: 43866909 ctctggattgtcaatatgcacagt----ctctggattgatgctagaatttgatacgaaaa 43866964
Query: 310 tgagaagaataatggaacagctcactttctggaacatatggctttcaagggcaccaaaaa 369
| ||||||| |||||||||||| | | ||||||| | ||| |||||||||||||||||
Sbjct: 43866965 taagaagaaaaatggaacagctaattctctggaagacatgaacttcaagggcaccaaaaa 43867024
Query: 370 gagatcccagttagatttggaacttgagattgaaaacatgggtgctcatctcaatgccta 429
||||| | | |||||| ||||| |||| | |||| || |||||||| |||||| |||
Sbjct: 43867025 gagattcaaattagatctggaatttgaaaacaaaaatgtgagtgctcatttcaatgacta 43867084
Query: 430 tacctccagagagcagactgtatattatgccaaagcattctctaaagatttgccaagagc 489
|||||||||| || | ||||||||||||||| ||| |||||| |||| |||| |||
Sbjct: 43867085 tacctccagaaagtggttcatatattatgccaaagaattatctaaatattttccaaaagc 43867144
Query: 490 tgtagaaattcttgctgatataatacaaaacagcacattgggagaagcagagattgaacg 549
|||||||| ||||| |||||| |||||| |||||||||| | ||||||||| |||||
Sbjct: 43867145 catagaaatttttgcttatataacacaaaatagcacattggaataagcagagactgaaca 43867204
Query: 550 tgaacgtggagtgatccttagagagatgcaggaagtcgaaaccaatttacaggaagttgt 609
||| || ||||||||||||||||| ||||| || |||||||||| |||||||
Sbjct: 43867205 tga-------gtaatccttagagagatgcacaaagtcaaagccaatttacacaaagttgt 43867257
Query: 610 ttttgattatcttcatgccacagcttatcaaaatactgcacttggacggacaattttggg 669
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 43867258 tttttattatcttcatgccacagcttatcaaaatactgcacttggatggacaatttgggg 43867317
Query: 670 accaactgaaaatatcaaatctataaatcgtaaggacttagtcgattatataaccacaca 729
|||||||||||||||||||| |||||||| | | ||| || | |||||| ||| ||||
Sbjct: 43867318 accaactgaaaatatcaaatgtataaatcatgaagacatactgtattatacgacctcaca 43867377
Query: 730 ttataagggaccaagaatagttcttgctgctgctggaggagtttcccatgatgaactgct 789
||| ||||| ||||||||||| |||||| || ||||||||| ||| || |||||| |||
Sbjct: 43867378 ttaaaaggggccaagaatagtccttgct-ct--tggaggagtctcctatcatgaacagct 43867434
Query: 790 tgaattggcgaagtttcattttggtgactctttgtcc 826
| | || || |||||||| ||||||||| |||||||
Sbjct: 43867435 taagttagcaaagtttcagtttggtgacattttgtcc 43867471
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,280,208
Number of extensions: 264
Number of successful extensions: 264
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 261
Number of HSP's successfully gapped: 19
Length of query: 1043
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1022
Effective length of database: 2,808,413,156
Effective search space: 2870198245432
Effective search space used: 2870198245432
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)