Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012739
(1143 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030389.2| eukaryotic translation initiation factor 3 s... 580 e-166
Alignment gi|XP_002699727.1| PREDICTED: eukaryotic translation initiation... 580 e-166
>ref|NP_001030389.2| eukaryotic translation initiation factor 3 subunit M [Bos taurus].
Length = 374
Score = 580 bits (1495), Expect = e-166
Identities = 295/296 (99%), Positives = 295/296 (99%)
Frame = +3
Query: 225 MSVPAFIDISEEDQAAELRAYLKSKGAEISEENSEGGLHVDLAQIIEACDVCLKEDDKDV 404
MSVPAFIDISEEDQAAELRAYLKSKGAEISEENSEGGLHVDLAQIIEACDVCLKEDDKDV
Sbjct: 1 MSVPAFIDISEEDQAAELRAYLKSKGAEISEENSEGGLHVDLAQIIEACDVCLKEDDKDV 60
Query: 405 ESVMNSVVSLLLILEPDKQEALIESLCEKLVKFREGERPSLRLQLLSNLFHGMDKNTPVR 584
ESVMNSVVSLLLILEPDKQEALIESLCEKLVKFREGERPSLRLQLLSNLFHGMDKNTPVR
Sbjct: 61 ESVMNSVVSLLLILEPDKQEALIESLCEKLVKFREGERPSLRLQLLSNLFHGMDKNTPVR 120
Query: 585 YTVYCSLIKVAASCGAIQYIPTELDQVRKWISDWNLNTEKKHTLLRLLYEALVDCKKSDA 764
YTVYCSLIKVAASCGAIQYIPTELDQVRKWISDWNL TEKKHTLLRLLYEALVDCKKSDA
Sbjct: 121 YTVYCSLIKVAASCGAIQYIPTELDQVRKWISDWNLTTEKKHTLLRLLYEALVDCKKSDA 180
Query: 765 ASKVMVELLGSYTEDNASQARVDAHRCIVRALKDPNAFLFDHLLTLKPVKFLEGELIHDL 944
ASKVMVELLGSYTEDNASQARVDAHRCIVRALKDPNAFLFDHLLTLKPVKFLEGELIHDL
Sbjct: 181 ASKVMVELLGSYTEDNASQARVDAHRCIVRALKDPNAFLFDHLLTLKPVKFLEGELIHDL 240
Query: 945 LTIFVSAKLASYVKFYQNNKDFIDSLGLLHEQNMAKMRLLTFMGMAVENKEISFDT 1112
LTIFVSAKLASYVKFYQNNKDFIDSLGLLHEQNMAKMRLLTFMGMAVENKEISFDT
Sbjct: 241 LTIFVSAKLASYVKFYQNNKDFIDSLGLLHEQNMAKMRLLTFMGMAVENKEISFDT 296
>ref|XP_002699727.1| PREDICTED: eukaryotic translation initiation factor 3, subunit M-like
[Bos taurus].
Length = 374
Score = 580 bits (1495), Expect = e-166
Identities = 295/296 (99%), Positives = 295/296 (99%)
Frame = +3
Query: 225 MSVPAFIDISEEDQAAELRAYLKSKGAEISEENSEGGLHVDLAQIIEACDVCLKEDDKDV 404
MSVPAFIDISEEDQAAELRAYLKSKGAEISEENSEGGLHVDLAQIIEACDVCLKEDDKDV
Sbjct: 1 MSVPAFIDISEEDQAAELRAYLKSKGAEISEENSEGGLHVDLAQIIEACDVCLKEDDKDV 60
Query: 405 ESVMNSVVSLLLILEPDKQEALIESLCEKLVKFREGERPSLRLQLLSNLFHGMDKNTPVR 584
ESVMNSVVSLLLILEPDKQEALIESLCEKLVKFREGERPSLRLQLLSNLFHGMDKNTPVR
Sbjct: 61 ESVMNSVVSLLLILEPDKQEALIESLCEKLVKFREGERPSLRLQLLSNLFHGMDKNTPVR 120
Query: 585 YTVYCSLIKVAASCGAIQYIPTELDQVRKWISDWNLNTEKKHTLLRLLYEALVDCKKSDA 764
YTVYCSLIKVAASCGAIQYIPTELDQVRKWISDWNL TEKKHTLLRLLYEALVDCKKSDA
Sbjct: 121 YTVYCSLIKVAASCGAIQYIPTELDQVRKWISDWNLTTEKKHTLLRLLYEALVDCKKSDA 180
Query: 765 ASKVMVELLGSYTEDNASQARVDAHRCIVRALKDPNAFLFDHLLTLKPVKFLEGELIHDL 944
ASKVMVELLGSYTEDNASQARVDAHRCIVRALKDPNAFLFDHLLTLKPVKFLEGELIHDL
Sbjct: 181 ASKVMVELLGSYTEDNASQARVDAHRCIVRALKDPNAFLFDHLLTLKPVKFLEGELIHDL 240
Query: 945 LTIFVSAKLASYVKFYQNNKDFIDSLGLLHEQNMAKMRLLTFMGMAVENKEISFDT 1112
LTIFVSAKLASYVKFYQNNKDFIDSLGLLHEQNMAKMRLLTFMGMAVENKEISFDT
Sbjct: 241 LTIFVSAKLASYVKFYQNNKDFIDSLGLLHEQNMAKMRLLTFMGMAVENKEISFDT 296
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,271,393
Number of extensions: 876962
Number of successful extensions: 2042
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2042
Number of HSP's successfully gapped: 2
Length of query: 381
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 277
Effective length of database: 14,240,222
Effective search space: 3944541494
Effective search space used: 3944541494
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012739
(1143 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533160.1| PREDICTED: similar to B5 receptor [Canis famili... 580 e-166
>ref|XP_533160.1| PREDICTED: similar to B5 receptor [Canis familiaris].
Length = 374
Score = 580 bits (1495), Expect = e-166
Identities = 295/296 (99%), Positives = 295/296 (99%)
Frame = +3
Query: 225 MSVPAFIDISEEDQAAELRAYLKSKGAEISEENSEGGLHVDLAQIIEACDVCLKEDDKDV 404
MSVPAFIDISEEDQAAELRAYLKSKGAEISEENSEGGLHVDLAQIIEACDVCLKEDDKDV
Sbjct: 1 MSVPAFIDISEEDQAAELRAYLKSKGAEISEENSEGGLHVDLAQIIEACDVCLKEDDKDV 60
Query: 405 ESVMNSVVSLLLILEPDKQEALIESLCEKLVKFREGERPSLRLQLLSNLFHGMDKNTPVR 584
ESVMNSVVSLLLILEPDKQEALIESLCEKLVKFREGERPSLRLQLLSNLFHGMDKNTPVR
Sbjct: 61 ESVMNSVVSLLLILEPDKQEALIESLCEKLVKFREGERPSLRLQLLSNLFHGMDKNTPVR 120
Query: 585 YTVYCSLIKVAASCGAIQYIPTELDQVRKWISDWNLNTEKKHTLLRLLYEALVDCKKSDA 764
YTVYCSLIKVAASCGAIQYIPTELDQVRKWISDWNL TEKKHTLLRLLYEALVDCKKSDA
Sbjct: 121 YTVYCSLIKVAASCGAIQYIPTELDQVRKWISDWNLTTEKKHTLLRLLYEALVDCKKSDA 180
Query: 765 ASKVMVELLGSYTEDNASQARVDAHRCIVRALKDPNAFLFDHLLTLKPVKFLEGELIHDL 944
ASKVMVELLGSYTEDNASQARVDAHRCIVRALKDPNAFLFDHLLTLKPVKFLEGELIHDL
Sbjct: 181 ASKVMVELLGSYTEDNASQARVDAHRCIVRALKDPNAFLFDHLLTLKPVKFLEGELIHDL 240
Query: 945 LTIFVSAKLASYVKFYQNNKDFIDSLGLLHEQNMAKMRLLTFMGMAVENKEISFDT 1112
LTIFVSAKLASYVKFYQNNKDFIDSLGLLHEQNMAKMRLLTFMGMAVENKEISFDT
Sbjct: 241 LTIFVSAKLASYVKFYQNNKDFIDSLGLLHEQNMAKMRLLTFMGMAVENKEISFDT 296
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,001,024
Number of extensions: 756103
Number of successful extensions: 2172
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2171
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 276
Effective length of database: 15,374,224
Effective search space: 4243285824
Effective search space used: 4243285824
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012739
(1143 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122934.1| PREDICTED: eukaryotic translation initiation... 582 e-166
>ref|XP_003122934.1| PREDICTED: eukaryotic translation initiation factor 3 subunit M [Sus
scrofa].
Length = 374
Score = 582 bits (1501), Expect = e-166
Identities = 296/296 (100%), Positives = 296/296 (100%)
Frame = +3
Query: 225 MSVPAFIDISEEDQAAELRAYLKSKGAEISEENSEGGLHVDLAQIIEACDVCLKEDDKDV 404
MSVPAFIDISEEDQAAELRAYLKSKGAEISEENSEGGLHVDLAQIIEACDVCLKEDDKDV
Sbjct: 1 MSVPAFIDISEEDQAAELRAYLKSKGAEISEENSEGGLHVDLAQIIEACDVCLKEDDKDV 60
Query: 405 ESVMNSVVSLLLILEPDKQEALIESLCEKLVKFREGERPSLRLQLLSNLFHGMDKNTPVR 584
ESVMNSVVSLLLILEPDKQEALIESLCEKLVKFREGERPSLRLQLLSNLFHGMDKNTPVR
Sbjct: 61 ESVMNSVVSLLLILEPDKQEALIESLCEKLVKFREGERPSLRLQLLSNLFHGMDKNTPVR 120
Query: 585 YTVYCSLIKVAASCGAIQYIPTELDQVRKWISDWNLNTEKKHTLLRLLYEALVDCKKSDA 764
YTVYCSLIKVAASCGAIQYIPTELDQVRKWISDWNLNTEKKHTLLRLLYEALVDCKKSDA
Sbjct: 121 YTVYCSLIKVAASCGAIQYIPTELDQVRKWISDWNLNTEKKHTLLRLLYEALVDCKKSDA 180
Query: 765 ASKVMVELLGSYTEDNASQARVDAHRCIVRALKDPNAFLFDHLLTLKPVKFLEGELIHDL 944
ASKVMVELLGSYTEDNASQARVDAHRCIVRALKDPNAFLFDHLLTLKPVKFLEGELIHDL
Sbjct: 181 ASKVMVELLGSYTEDNASQARVDAHRCIVRALKDPNAFLFDHLLTLKPVKFLEGELIHDL 240
Query: 945 LTIFVSAKLASYVKFYQNNKDFIDSLGLLHEQNMAKMRLLTFMGMAVENKEISFDT 1112
LTIFVSAKLASYVKFYQNNKDFIDSLGLLHEQNMAKMRLLTFMGMAVENKEISFDT
Sbjct: 241 LTIFVSAKLASYVKFYQNNKDFIDSLGLLHEQNMAKMRLLTFMGMAVENKEISFDT 296
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,643,435
Number of extensions: 779395
Number of successful extensions: 1272
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1272
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 280
Effective length of database: 8,829,335
Effective search space: 2472213800
Effective search space used: 2472213800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012739
(1143 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_663355.1| eukaryotic translation initiation factor 3 subu... 577 e-165
>ref|NP_663355.1| eukaryotic translation initiation factor 3 subunit M [Mus musculus].
Length = 374
Score = 577 bits (1487), Expect = e-165
Identities = 293/296 (98%), Positives = 294/296 (99%)
Frame = +3
Query: 225 MSVPAFIDISEEDQAAELRAYLKSKGAEISEENSEGGLHVDLAQIIEACDVCLKEDDKDV 404
MSVPAFIDISEEDQAAELRAYLKSKGAE+SEENSEGGLHVDLAQIIEACDVCLKEDDKDV
Sbjct: 1 MSVPAFIDISEEDQAAELRAYLKSKGAELSEENSEGGLHVDLAQIIEACDVCLKEDDKDV 60
Query: 405 ESVMNSVVSLLLILEPDKQEALIESLCEKLVKFREGERPSLRLQLLSNLFHGMDKNTPVR 584
ESVMNSVVSLLLILEPDKQEALIESLCEKLVKFREGERPSLRLQLLSNLFHGMDKNTPVR
Sbjct: 61 ESVMNSVVSLLLILEPDKQEALIESLCEKLVKFREGERPSLRLQLLSNLFHGMDKNTPVR 120
Query: 585 YTVYCSLIKVAASCGAIQYIPTELDQVRKWISDWNLNTEKKHTLLRLLYEALVDCKKSDA 764
YTVYCSLIKVAASCGAIQYIPTELDQVRKWISDW L TEKKHTLLRLLYEALVDCKKSDA
Sbjct: 121 YTVYCSLIKVAASCGAIQYIPTELDQVRKWISDWKLTTEKKHTLLRLLYEALVDCKKSDA 180
Query: 765 ASKVMVELLGSYTEDNASQARVDAHRCIVRALKDPNAFLFDHLLTLKPVKFLEGELIHDL 944
ASKVMVELLGSYTEDNASQARVDAHRCIVRALKDPNAFLFDHLLTLKPVKFLEGELIHDL
Sbjct: 181 ASKVMVELLGSYTEDNASQARVDAHRCIVRALKDPNAFLFDHLLTLKPVKFLEGELIHDL 240
Query: 945 LTIFVSAKLASYVKFYQNNKDFIDSLGLLHEQNMAKMRLLTFMGMAVENKEISFDT 1112
LTIFVSAKLASYVKFYQNNKDFIDSLGLLHEQNMAKMRLLTFMGMAVENKEISFDT
Sbjct: 241 LTIFVSAKLASYVKFYQNNKDFIDSLGLLHEQNMAKMRLLTFMGMAVENKEISFDT 296
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,770,715
Number of extensions: 649175
Number of successful extensions: 1793
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1793
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 278
Effective length of database: 12,523,851
Effective search space: 3481630578
Effective search space used: 3481630578
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012739
(1143 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006351.2| eukaryotic translation initiation factor 3 subu... 580 e-166
>ref|NP_006351.2| eukaryotic translation initiation factor 3 subunit M [Homo sapiens].
Length = 374
Score = 580 bits (1495), Expect = e-166
Identities = 295/296 (99%), Positives = 295/296 (99%)
Frame = +3
Query: 225 MSVPAFIDISEEDQAAELRAYLKSKGAEISEENSEGGLHVDLAQIIEACDVCLKEDDKDV 404
MSVPAFIDISEEDQAAELRAYLKSKGAEISEENSEGGLHVDLAQIIEACDVCLKEDDKDV
Sbjct: 1 MSVPAFIDISEEDQAAELRAYLKSKGAEISEENSEGGLHVDLAQIIEACDVCLKEDDKDV 60
Query: 405 ESVMNSVVSLLLILEPDKQEALIESLCEKLVKFREGERPSLRLQLLSNLFHGMDKNTPVR 584
ESVMNSVVSLLLILEPDKQEALIESLCEKLVKFREGERPSLRLQLLSNLFHGMDKNTPVR
Sbjct: 61 ESVMNSVVSLLLILEPDKQEALIESLCEKLVKFREGERPSLRLQLLSNLFHGMDKNTPVR 120
Query: 585 YTVYCSLIKVAASCGAIQYIPTELDQVRKWISDWNLNTEKKHTLLRLLYEALVDCKKSDA 764
YTVYCSLIKVAASCGAIQYIPTELDQVRKWISDWNL TEKKHTLLRLLYEALVDCKKSDA
Sbjct: 121 YTVYCSLIKVAASCGAIQYIPTELDQVRKWISDWNLTTEKKHTLLRLLYEALVDCKKSDA 180
Query: 765 ASKVMVELLGSYTEDNASQARVDAHRCIVRALKDPNAFLFDHLLTLKPVKFLEGELIHDL 944
ASKVMVELLGSYTEDNASQARVDAHRCIVRALKDPNAFLFDHLLTLKPVKFLEGELIHDL
Sbjct: 181 ASKVMVELLGSYTEDNASQARVDAHRCIVRALKDPNAFLFDHLLTLKPVKFLEGELIHDL 240
Query: 945 LTIFVSAKLASYVKFYQNNKDFIDSLGLLHEQNMAKMRLLTFMGMAVENKEISFDT 1112
LTIFVSAKLASYVKFYQNNKDFIDSLGLLHEQNMAKMRLLTFMGMAVENKEISFDT
Sbjct: 241 LTIFVSAKLASYVKFYQNNKDFIDSLGLLHEQNMAKMRLLTFMGMAVENKEISFDT 296
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 33,489,470
Number of extensions: 741563
Number of successful extensions: 2078
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2078
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 277
Effective length of database: 14,868,908
Effective search space: 4118687516
Effective search space used: 4118687516
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012739
(1143 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr08 979 0.0
Sscrofa_Chr02 281 4e-73
>Sscrofa_Chr08
|| Length = 148491826
Score = 979 bits (494), Expect = 0.0
Identities = 811/913 (88%), Gaps = 34/913 (3%)
Strand = Plus / Plus
Query: 209 tgccccggtcttcaccatgagcgtcccggcgttcatcgacatcagcgaggaagatcaggc 268
|||||| ||||| ||||||||| || | | |||||| |||||| ||||||||||||||
Sbjct: 111487799 tgcccctgtctttaccatgagcaaccggacattcatccgcatcagtgaggaagatcaggc 111487858
Query: 269 tgctgaacttcgagcttatttgaaatctaaaggagctgaaatttcagaagagaactcaga 328
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 111487859 tgctgaacttcgagcttatttgaaatctagaggagctgaaatttcagaaaagaactcaga 111487918
Query: 329 aggtggacttcatgtagatttagctcaaattattgaagcctgtgatgtatgtctgaagga 388
|||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 111487919 aggtggacctcatgtagctttagctcaaattattgaagcctatgatgtatgtctgaaggg 111487978
Query: 389 agatgataaagatgttgaaagtgtgatgaacagcgtggtatccctcctgttgatcctgga 448
|||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 111487979 agatgataaagatg---aaagt-----------------atccctcctgttgatcctgga 111488018
Query: 449 accagataagcaagaagctctgattgagagcctgtgtgagaaactggtcaaatttcggga 508
||||||||||||||||||| |||||||||||||||||||||||| ||| ||||| ||||
Sbjct: 111488019 gccagataagcaagaagctcagattgagagcctgtgtgagaaactagtcgaattttggga 111488078
Query: 509 aggtgaacgcccatctctgagact-acagttgcttagcaacctttttcatgggatggata 567
| ||||| |||||||||| ||| |||| |||| |||||| |||| ||||||||| ||
Sbjct: 111488079 cg-tgaacatccatctctgaaactcacagctgctaagcaacatttta-atgggatgggta 111488136
Query: 568 agaatactcctgtaagatacacagtatattgcagcctcattaaagtggcagcatcttgtg 627
|||| |||||| ||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 111488137 agaagactcctataagatatacagtatattgcagtctcattaaagtggcagcatcttgtg 111488196
Query: 628 gggccatccagtatattccaactgagctggat-caagttagaaaatggatttctgactgg 686
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 111488197 gggtcatccagtatattccaactgagctggatacaagttagaaaatggatttctgactgg 111488256
Query: 687 aacctcaacactgagaaaaaa-------cacacccttttaaggctactttatgaggcact 739
||||||||||| | | |||| |||| ||||||||||||| |||||||||||||
Sbjct: 111488257 aacctcaacacacacacaaaaaaaaacccacatccttttaaggctattttatgaggcact 111488316
Query: 740 tgtagattgtaagaaaagtgatgctgcatcaaaagtcatggtggaattgctaggaagtta 799
||||||||||||||||||||||| ||| |||||| ||||||| ||||||||||||||||
Sbjct: 111488317 tgtagattgtaagaaaagtgatgttgcttcaaaaatcatggtaaaattgctaggaagtta 111488376
Query: 800 cacagaggacaatgcttcccaggctcgagttgatgctcacaggtgtattgtgcgagcatt 859
|| ||| | ||||||||||||| ||| |||||||||||||| || ||||| |||| |
Sbjct: 111488377 catggagaat--tgcttcccaggcttgagctgatgctcacaggtatactgtgcaagcact 111488434
Query: 860 gaaagatccaaatgcatttctttttgaccaccttcttactttgaaaccagtcaagttttt 919
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111488435 gaaagatccaaattcatttctttttgaccaccttcttactttgaaaccagtcaagttttt 111488494
Query: 920 ggaaggcgagcttattcatgatcttttaaccatttttgtgagtgctaagttggcatcata 979
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 111488495 ggaaggcgagcttattcatgatcttttaaccatttttgggagtgctaagttggcatcaca 111488554
Query: 980 tgtcaagttttatcagaataataaagacttcattgattcacttggcctactacatgaaca 1039
||||||||||||||||||||||||||||||||||| || || ||||||||||||| |||
Sbjct: 111488555 tgtcaagttttatcagaataataaagacttcattggtttacgtggcctactacataaact 111488614
Query: 1040 gaatatggcaaaaatgaggctactcacttttatgggaatggcagtggaaaataaagaaat 1099
||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 111488615 gaata-ggcaaaaattaggctacttacttttatgggaatggcagtggaaaataaagaaac 111488673
Query: 1100 ttcttttgacaca 1112
|| ||||||||||
Sbjct: 111488674 ttattttgacaca 111488686
>Sscrofa_Chr02
|| Length = 162569375
Score = 281 bits (142), Expect = 4e-73
Identities = 142/142 (100%)
Strand = Plus / Minus
Query: 398 agatgttgaaagtgtgatgaacagcgtggtatccctcctgttgatcctggaaccagataa 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30768967 agatgttgaaagtgtgatgaacagcgtggtatccctcctgttgatcctggaaccagataa 30768908
Query: 458 gcaagaagctctgattgagagcctgtgtgagaaactggtcaaatttcgggaaggtgaacg 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30768907 gcaagaagctctgattgagagcctgtgtgagaaactggtcaaatttcgggaaggtgaacg 30768848
Query: 518 cccatctctgagactacagttg 539
||||||||||||||||||||||
Sbjct: 30768847 cccatctctgagactacagttg 30768826
Score = 270 bits (136), Expect = 2e-69
Identities = 136/136 (100%)
Strand = Plus / Minus
Query: 264 caggctgctgaacttcgagcttatttgaaatctaaaggagctgaaatttcagaagagaac 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30770090 caggctgctgaacttcgagcttatttgaaatctaaaggagctgaaatttcagaagagaac 30770031
Query: 324 tcagaaggtggacttcatgtagatttagctcaaattattgaagcctgtgatgtatgtctg 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30770030 tcagaaggtggacttcatgtagatttagctcaaattattgaagcctgtgatgtatgtctg 30769971
Query: 384 aaggaagatgataaag 399
||||||||||||||||
Sbjct: 30769970 aaggaagatgataaag 30769955
Score = 250 bits (126), Expect = 1e-63
Identities = 126/126 (100%)
Strand = Plus / Minus
Query: 539 gcttagcaacctttttcatgggatggataagaatactcctgtaagatacacagtatattg 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30768544 gcttagcaacctttttcatgggatggataagaatactcctgtaagatacacagtatattg 30768485
Query: 599 cagcctcattaaagtggcagcatcttgtggggccatccagtatattccaactgagctgga 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30768484 cagcctcattaaagtggcagcatcttgtggggccatccagtatattccaactgagctgga 30768425
Query: 659 tcaagt 664
||||||
Sbjct: 30768424 tcaagt 30768419
Score = 212 bits (107), Expect = 3e-52
Identities = 110/111 (99%)
Strand = Plus / Minus
Query: 157 cagcccagctctcttttccggtcggcgtggtttgggaggtgctcgttcgcggtgccccgg 216
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 30772822 cagcccagctctcttttccggtcggcgtggtttgggaggtgctcgtttgcggtgccccgg 30772763
Query: 217 tcttcaccatgagcgtcccggcgttcatcgacatcagcgaggaagatcagg 267
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30772762 tcttcaccatgagcgtcccggcgttcatcgacatcagcgaggaagatcagg 30772712
Score = 202 bits (102), Expect = 3e-49
Identities = 102/102 (100%)
Strand = Plus / Minus
Query: 840 aggtgtattgtgcgagcattgaaagatccaaatgcatttctttttgaccaccttcttact 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30755000 aggtgtattgtgcgagcattgaaagatccaaatgcatttctttttgaccaccttcttact 30754941
Query: 900 ttgaaaccagtcaagtttttggaaggcgagcttattcatgat 941
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30754940 ttgaaaccagtcaagtttttggaaggcgagcttattcatgat 30754899
Score = 188 bits (95), Expect = 5e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 663 gttagaaaatggatttctgactggaacctcaacactgagaaaaaacacacccttttaagg 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30768268 gttagaaaatggatttctgactggaacctcaacactgagaaaaaacacacccttttaagg 30768209
Query: 723 ctactttatgaggcacttgtagattgtaagaaaag 757
|||||||||||||||||||||||||||||||||||
Sbjct: 30768208 ctactttatgaggcacttgtagattgtaagaaaag 30768174
Score = 186 bits (94), Expect = 2e-44
Identities = 120/125 (96%), Gaps = 4/125 (3%)
Strand = Plus / Minus
Query: 1023 ggcctactacatgaacagaatatggcaaaaatgaggctactcacttttatgggaatggca 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30750580 ggcctactacatgaacagaatatggcaaaaatgaggctactcacttttatgggaatggca 30750521
Query: 1083 gtggaaaataaagaaatttcttttgacac-atgcaac-agaacttc--aatggagctgat 1138
||||||||||||||||||||||||||||| ||||||| |||||||| | ||||||||||
Sbjct: 30750520 gtggaaaataaagaaatttcttttgacacaatgcaacaagaacttcagattggagctgat 30750461
Query: 1139 gatgt 1143
|||||
Sbjct: 30750460 gatgt 30750456
Score = 174 bits (88), Expect = 7e-41
Identities = 88/88 (100%)
Strand = Plus / Minus
Query: 756 agtgatgctgcatcaaaagtcatggtggaattgctaggaagttacacagaggacaatgct 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30755938 agtgatgctgcatcaaaagtcatggtggaattgctaggaagttacacagaggacaatgct 30755879
Query: 816 tcccaggctcgagttgatgctcacaggt 843
||||||||||||||||||||||||||||
Sbjct: 30755878 tcccaggctcgagttgatgctcacaggt 30755851
Score = 165 bits (83), Expect = 7e-38
Identities = 83/83 (100%)
Strand = Plus / Minus
Query: 942 cttttaaccatttttgtgagtgctaagttggcatcatatgtcaagttttatcagaataat 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30754291 cttttaaccatttttgtgagtgctaagttggcatcatatgtcaagttttatcagaataat 30754232
Query: 1002 aaagacttcattgattcacttgg 1024
|||||||||||||||||||||||
Sbjct: 30754231 aaagacttcattgattcacttgg 30754209
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,894,454
Number of extensions: 221
Number of successful extensions: 221
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 218
Number of HSP's successfully gapped: 13
Length of query: 1143
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1122
Effective length of database: 2,808,413,156
Effective search space: 3151039561032
Effective search space used: 3151039561032
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)