Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012740
(1017 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,090,126
Number of extensions: 1402494
Number of successful extensions: 7063
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 7029
Number of HSP's successfully gapped: 0
Length of query: 339
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 236
Effective length of database: 15,440,896
Effective search space: 3644051456
Effective search space used: 3644051456
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-012740
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012740
(1017 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069583.1| transmembrane prolyl 4-hydroxylase [Bos taur... 596 e-170
>ref|NP_001069583.1| transmembrane prolyl 4-hydroxylase [Bos taurus].
Length = 494
Score = 596 bits (1536), Expect = e-170
Identities = 292/322 (90%), Positives = 301/322 (93%)
Frame = +3
Query: 51 GPRREDSSPQWTPPPREPVGAAAGLGDCEDAPVRPLGKPRGICSRAYFLVLMVFVHLYLG 230
GPR E SPQW P + AAA L DCEDAPVRPL KPRGICSRAYFLVLMVFVHLYLG
Sbjct: 6 GPRPEAPSPQWPPRHHDSAEAAARLSDCEDAPVRPLCKPRGICSRAYFLVLMVFVHLYLG 65
Query: 231 NVLALLLFVHYSNGDESSDPGPQRRTQSPGPAPTLAPLTRLEGIKVGHERKVQLVADRDH 410
NVLALLLFVHYSNGDESSDPGPQRR Q PGPAPTLAPLTRLEGIKVGHERK+QLVADRDH
Sbjct: 66 NVLALLLFVHYSNGDESSDPGPQRRAQGPGPAPTLAPLTRLEGIKVGHERKIQLVADRDH 125
Query: 411 FIRTLSLKPLLFEVPGFLSDEECRLIIHLAQMKGLQRSQILPTEEYEEAMGTMQISQLDL 590
FIRTLSLKPLLFE+PGFLSDEECRL+IHLAQMKGLQRSQILPTEEYEEAMGTMQIS LDL
Sbjct: 126 FIRTLSLKPLLFEIPGFLSDEECRLVIHLAQMKGLQRSQILPTEEYEEAMGTMQISLLDL 185
Query: 591 FQLLDQNHDGHLQLREVLAQTRLGNGRWMTPENIQEMYSAIKADPDGDGVLSLQEFSDMD 770
FQLLDQNHDG LQLREVLAQ RLGNGRWMTPE IQEMYSAIKADPDGDGVLSLQEFS+MD
Sbjct: 186 FQLLDQNHDGRLQLREVLAQNRLGNGRWMTPETIQEMYSAIKADPDGDGVLSLQEFSNMD 245
Query: 771 LRDFHKYMRSHKAESSELVRNSYHTWLYQGEGAHHVMRAIRQRVLRLTRLSPEIVELSEP 950
LRDFHKYMRSH+AESS+LVRNS+HTWLYQGEGAHHVMRAIRQRVLRLTRLSPEIVELSEP
Sbjct: 246 LRDFHKYMRSHRAESSQLVRNSHHTWLYQGEGAHHVMRAIRQRVLRLTRLSPEIVELSEP 305
Query: 951 LQVVRYGEGSHYHAHVERGPVY 1016
LQVVRYGEG HYHAHV+ GPVY
Sbjct: 306 LQVVRYGEGGHYHAHVDSGPVY 327
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,369,902
Number of extensions: 1366812
Number of successful extensions: 6750
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6707
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 236
Effective length of database: 14,273,310
Effective search space: 3368501160
Effective search space used: 3368501160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012740
(1017 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003132246.1| PREDICTED: transmembrane prolyl 4-hydroxylas... 653 0.0
>ref|XP_003132246.1| PREDICTED: transmembrane prolyl 4-hydroxylase [Sus scrofa].
Length = 497
Score = 653 bits (1685), Expect = 0.0
Identities = 319/322 (99%), Positives = 320/322 (99%)
Frame = +3
Query: 51 GPRREDSSPQWTPPPREPVGAAAGLGDCEDAPVRPLGKPRGICSRAYFLVLMVFVHLYLG 230
GPRREDSSPQWTPPPREPVGAAAGLGDCEDAPVRPLGKPRGICSRAYFLVLMVFVHLYLG
Sbjct: 9 GPRREDSSPQWTPPPREPVGAAAGLGDCEDAPVRPLGKPRGICSRAYFLVLMVFVHLYLG 68
Query: 231 NVLALLLFVHYSNGDESSDPGPQRRTQSPGPAPTLAPLTRLEGIKVGHERKVQLVADRDH 410
NVLALLLFVHYSNGDESSDPGPQRRTQSPGPAPTLAPLTRLEGIKVGHERKVQLVADRDH
Sbjct: 69 NVLALLLFVHYSNGDESSDPGPQRRTQSPGPAPTLAPLTRLEGIKVGHERKVQLVADRDH 128
Query: 411 FIRTLSLKPLLFEVPGFLSDEECRLIIHLAQMKGLQRSQILPTEEYEEAMGTMQISQLDL 590
FIRTLSLKPLLFEVPGFLSDEECRLIIHLAQMKGLQRSQILPTEEYEEAMGTMQISQLDL
Sbjct: 129 FIRTLSLKPLLFEVPGFLSDEECRLIIHLAQMKGLQRSQILPTEEYEEAMGTMQISQLDL 188
Query: 591 FQLLDQNHDGHLQLREVLAQTRLGNGRWMTPENIQEMYSAIKADPDGDGVLSLQEFSDMD 770
FQLLDQNHDGHLQLREVLAQTRLGNGRWMTPENIQEMYSAIKADPDGDGVLSLQEFSDMD
Sbjct: 189 FQLLDQNHDGHLQLREVLAQTRLGNGRWMTPENIQEMYSAIKADPDGDGVLSLQEFSDMD 248
Query: 771 LRDFHKYMRSHKAESSELVRNSYHTWLYQGEGAHHVMRAIRQRVLRLTRLSPEIVELSEP 950
LRDFHKYMRSHKAESSELVRNSYHTWLYQGEGAHHVMRAIRQRVLRLTRLSPEIVELSEP
Sbjct: 249 LRDFHKYMRSHKAESSELVRNSYHTWLYQGEGAHHVMRAIRQRVLRLTRLSPEIVELSEP 308
Query: 951 LQVVRYGEGSHYHAHVERGPVY 1016
LQVVRYGEG HYHAHV+ GPVY
Sbjct: 309 LQVVRYGEGGHYHAHVDSGPVY 330
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,016,578
Number of extensions: 884554
Number of successful extensions: 4564
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4535
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 239
Effective length of database: 8,854,232
Effective search space: 2116161448
Effective search space used: 2116161448
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012740
(1017 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_083220.3| transmembrane prolyl 4-hydroxylase [Mus musculu... 573 e-164
>ref|NP_083220.3| transmembrane prolyl 4-hydroxylase [Mus musculus].
Length = 503
Score = 573 bits (1477), Expect = e-164
Identities = 284/319 (89%), Positives = 295/319 (92%), Gaps = 1/319 (0%)
Frame = +3
Query: 63 EDSSPQWT-PPPREPVGAAAGLGDCEDAPVRPLGKPRGICSRAYFLVLMVFVHLYLGNVL 239
E S+ QW PP P GAA GD EDAPVRPL KPRGICSRAYFLVLMVFVHLYLGNVL
Sbjct: 18 EASNLQWPLPPEHRPSGAATRPGDSEDAPVRPLCKPRGICSRAYFLVLMVFVHLYLGNVL 77
Query: 240 ALLLFVHYSNGDESSDPGPQRRTQSPGPAPTLAPLTRLEGIKVGHERKVQLVADRDHFIR 419
ALLLFVHYSNGDES+DPGPQRR QSP P PTL PLTRLEGIKVG+ERKVQ+VA RDHFIR
Sbjct: 78 ALLLFVHYSNGDESTDPGPQRREQSPQPVPTLGPLTRLEGIKVGYERKVQVVAGRDHFIR 137
Query: 420 TLSLKPLLFEVPGFLSDEECRLIIHLAQMKGLQRSQILPTEEYEEAMGTMQISQLDLFQL 599
TLSLKPLLFE+PGFLSDEECRLIIHLAQMKGLQRSQILPTEEYEEAM MQ+SQLDLFQL
Sbjct: 138 TLSLKPLLFEIPGFLSDEECRLIIHLAQMKGLQRSQILPTEEYEEAMSAMQVSQLDLFQL 197
Query: 600 LDQNHDGHLQLREVLAQTRLGNGRWMTPENIQEMYSAIKADPDGDGVLSLQEFSDMDLRD 779
LDQNHDG LQLREVLAQTRLGNGRWMTPENIQEMYSAIKADPDGDGVLSLQEFS+MDLRD
Sbjct: 198 LDQNHDGRLQLREVLAQTRLGNGRWMTPENIQEMYSAIKADPDGDGVLSLQEFSNMDLRD 257
Query: 780 FHKYMRSHKAESSELVRNSYHTWLYQGEGAHHVMRAIRQRVLRLTRLSPEIVELSEPLQV 959
FHKYMRSHKAES+ELVRNS+HTWL+QGEGAHHVMRAIRQRVLRLTRLSPEIVE SEPLQV
Sbjct: 258 FHKYMRSHKAESNELVRNSHHTWLHQGEGAHHVMRAIRQRVLRLTRLSPEIVEFSEPLQV 317
Query: 960 VRYGEGSHYHAHVERGPVY 1016
VRYGEG HYHAHV+ GPVY
Sbjct: 318 VRYGEGGHYHAHVDSGPVY 336
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,133,054
Number of extensions: 1124971
Number of successful extensions: 5333
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5296
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 237
Effective length of database: 12,553,887
Effective search space: 2975271219
Effective search space used: 2975271219
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012740
(1017 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_808807.2| transmembrane prolyl 4-hydroxylase isoform c [H... 583 e-167
Alignment gi|NP_808808.1| transmembrane prolyl 4-hydroxylase isoform a [H... 583 e-167
>ref|NP_808807.2| transmembrane prolyl 4-hydroxylase isoform c [Homo sapiens].
Length = 563
Score = 583 bits (1504), Expect = e-167
Identities = 286/318 (89%), Positives = 296/318 (93%)
Frame = +3
Query: 63 EDSSPQWTPPPREPVGAAAGLGDCEDAPVRPLGKPRGICSRAYFLVLMVFVHLYLGNVLA 242
E S PQW PP AAAGLGD EDAPVRPL KPRGICSRAYFLVLMVFVHLYLGNVLA
Sbjct: 18 EASRPQWAPPDHCQAQAAAGLGDGEDAPVRPLCKPRGICSRAYFLVLMVFVHLYLGNVLA 77
Query: 243 LLLFVHYSNGDESSDPGPQRRTQSPGPAPTLAPLTRLEGIKVGHERKVQLVADRDHFIRT 422
LLLFVHYSNGDESSDPGPQ R Q PGP PTL PLTRLEGIKVGHERKVQLV DRDHFIRT
Sbjct: 78 LLLFVHYSNGDESSDPGPQHRAQGPGPEPTLGPLTRLEGIKVGHERKVQLVTDRDHFIRT 137
Query: 423 LSLKPLLFEVPGFLSDEECRLIIHLAQMKGLQRSQILPTEEYEEAMGTMQISQLDLFQLL 602
LSLKPLLFE+PGFL+DEECRLIIHLAQMKGLQRSQILPTEEYEEAM TMQ+SQLDLF+LL
Sbjct: 138 LSLKPLLFEIPGFLTDEECRLIIHLAQMKGLQRSQILPTEEYEEAMSTMQVSQLDLFRLL 197
Query: 603 DQNHDGHLQLREVLAQTRLGNGRWMTPENIQEMYSAIKADPDGDGVLSLQEFSDMDLRDF 782
DQN DGHLQLREVLAQTRLGNG WMTPE+IQEMY+AIKADPDGDGVLSLQEFS+MDLRDF
Sbjct: 198 DQNRDGHLQLREVLAQTRLGNGWWMTPESIQEMYAAIKADPDGDGVLSLQEFSNMDLRDF 257
Query: 783 HKYMRSHKAESSELVRNSYHTWLYQGEGAHHVMRAIRQRVLRLTRLSPEIVELSEPLQVV 962
HKYMRSHKAESSELVRNS+HTWLYQGEGAHH+MRAIRQRVLRLTRLSPEIVELSEPLQVV
Sbjct: 258 HKYMRSHKAESSELVRNSHHTWLYQGEGAHHIMRAIRQRVLRLTRLSPEIVELSEPLQVV 317
Query: 963 RYGEGSHYHAHVERGPVY 1016
RYGEG HYHAHV+ GPVY
Sbjct: 318 RYGEGGHYHAHVDSGPVY 335
>ref|NP_808808.1| transmembrane prolyl 4-hydroxylase isoform a [Homo sapiens].
Length = 502
Score = 583 bits (1504), Expect = e-167
Identities = 286/318 (89%), Positives = 296/318 (93%)
Frame = +3
Query: 63 EDSSPQWTPPPREPVGAAAGLGDCEDAPVRPLGKPRGICSRAYFLVLMVFVHLYLGNVLA 242
E S PQW PP AAAGLGD EDAPVRPL KPRGICSRAYFLVLMVFVHLYLGNVLA
Sbjct: 18 EASRPQWAPPDHCQAQAAAGLGDGEDAPVRPLCKPRGICSRAYFLVLMVFVHLYLGNVLA 77
Query: 243 LLLFVHYSNGDESSDPGPQRRTQSPGPAPTLAPLTRLEGIKVGHERKVQLVADRDHFIRT 422
LLLFVHYSNGDESSDPGPQ R Q PGP PTL PLTRLEGIKVGHERKVQLV DRDHFIRT
Sbjct: 78 LLLFVHYSNGDESSDPGPQHRAQGPGPEPTLGPLTRLEGIKVGHERKVQLVTDRDHFIRT 137
Query: 423 LSLKPLLFEVPGFLSDEECRLIIHLAQMKGLQRSQILPTEEYEEAMGTMQISQLDLFQLL 602
LSLKPLLFE+PGFL+DEECRLIIHLAQMKGLQRSQILPTEEYEEAM TMQ+SQLDLF+LL
Sbjct: 138 LSLKPLLFEIPGFLTDEECRLIIHLAQMKGLQRSQILPTEEYEEAMSTMQVSQLDLFRLL 197
Query: 603 DQNHDGHLQLREVLAQTRLGNGRWMTPENIQEMYSAIKADPDGDGVLSLQEFSDMDLRDF 782
DQN DGHLQLREVLAQTRLGNG WMTPE+IQEMY+AIKADPDGDGVLSLQEFS+MDLRDF
Sbjct: 198 DQNRDGHLQLREVLAQTRLGNGWWMTPESIQEMYAAIKADPDGDGVLSLQEFSNMDLRDF 257
Query: 783 HKYMRSHKAESSELVRNSYHTWLYQGEGAHHVMRAIRQRVLRLTRLSPEIVELSEPLQVV 962
HKYMRSHKAESSELVRNS+HTWLYQGEGAHH+MRAIRQRVLRLTRLSPEIVELSEPLQVV
Sbjct: 258 HKYMRSHKAESSELVRNSHHTWLYQGEGAHHIMRAIRQRVLRLTRLSPEIVELSEPLQVV 317
Query: 963 RYGEGSHYHAHVERGPVY 1016
RYGEG HYHAHV+ GPVY
Sbjct: 318 RYGEGGHYHAHVDSGPVY 335
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,163,736
Number of extensions: 1364375
Number of successful extensions: 6734
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6684
Number of HSP's successfully gapped: 2
Length of query: 339
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 236
Effective length of database: 14,901,872
Effective search space: 3516841792
Effective search space used: 3516841792
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012740
(1017 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 728 0.0
>Sscrofa_Chr13
|| Length = 218635234
Score = 728 bits (367), Expect = 0.0
Identities = 367/367 (100%)
Strand = Plus / Plus
Query: 2 ttggcgcgtgcgccacttgggcgctatggctgcagctgcggcggccgcaggcccgcggcg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34877005 ttggcgcgtgcgccacttgggcgctatggctgcagctgcggcggccgcaggcccgcggcg 34877064
Query: 62 ggaggactcgagtccgcagtggacgccacccccgcgcgagccggtcggagcagcggccgg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34877065 ggaggactcgagtccgcagtggacgccacccccgcgcgagccggtcggagcagcggccgg 34877124
Query: 122 gctgggcgactgcgaggatgcaccggtccggccgctgggtaagccccgcggcatctgctc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34877125 gctgggcgactgcgaggatgcaccggtccggccgctgggtaagccccgcggcatctgctc 34877184
Query: 182 gcgcgcctactttctggtgctgatggtgttcgtgcatctgtacctgggcaacgtgctagc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34877185 gcgcgcctactttctggtgctgatggtgttcgtgcatctgtacctgggcaacgtgctagc 34877244
Query: 242 gctgctgctcttcgtacactacagcaacggtgacgagagcagcgaccctgggccccagcg 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34877245 gctgctgctcttcgtacactacagcaacggtgacgagagcagcgaccctgggccccagcg 34877304
Query: 302 ccgcacccagagccccggacctgcgccaaccttggctcccctcacccggctcgagggcat 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34877305 ccgcacccagagccccggacctgcgccaaccttggctcccctcacccggctcgagggcat 34877364
Query: 362 caaggtg 368
|||||||
Sbjct: 34877365 caaggtg 34877371
Score = 385 bits (194), Expect = e-104
Identities = 194/194 (100%)
Strand = Plus / Plus
Query: 447 gaagtccctggcttcctgagtgatgaggagtgtcggctcatcatccacctggcacagatg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34880112 gaagtccctggcttcctgagtgatgaggagtgtcggctcatcatccacctggcacagatg 34880171
Query: 507 aaggggttacagcgcagccagatcctgcccaccgaagagtacgaggaagcaatgggcaca 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34880172 aaggggttacagcgcagccagatcctgcccaccgaagagtacgaggaagcaatgggcaca 34880231
Query: 567 atgcagatcagccagttggacctcttccagctgctggaccagaaccatgatggtcacctg 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34880232 atgcagatcagccagttggacctcttccagctgctggaccagaaccatgatggtcacctg 34880291
Query: 627 cagctccgtgaggt 640
||||||||||||||
Sbjct: 34880292 cagctccgtgaggt 34880305
Score = 327 bits (165), Expect = 7e-87
Identities = 165/165 (100%)
Strand = Plus / Plus
Query: 735 ggagtgctgagcctgcaggagttctccgacatggaccttcgggactttcacaagtacatg 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34882591 ggagtgctgagcctgcaggagttctccgacatggaccttcgggactttcacaagtacatg 34882650
Query: 795 aggagccacaaagcagagtccagtgagctggtgcgtaacagctaccacacgtggctgtac 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34882651 aggagccacaaagcagagtccagtgagctggtgcgtaacagctaccacacgtggctgtac 34882710
Query: 855 cagggtgaaggtgcccatcacgtcatgcgtgccatccgccagagg 899
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34882711 cagggtgaaggtgcccatcacgtcatgcgtgccatccgccagagg 34882755
Score = 216 bits (109), Expect = 2e-53
Identities = 118/121 (97%)
Strand = Plus / Plus
Query: 897 agggtgctgcgcctcacccgcctgtcacctgagatcgtggagctcagcgagccgctgcag 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34883306 agggtgctgcgcctcacccgcctgtcacctgagatcgtggagctcagcgagccgctgcag 34883365
Query: 957 gtcgtgcggtatggcgagggaagccactaccatgcccatgtggaacgcgggcctgtgtac 1016
||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 34883366 gtcgtgcggtatggcgagggaggccactaccatgcccatgtggacagcgggcctgtgtac 34883425
Query: 1017 c 1017
|
Sbjct: 34883426 c 34883426
Score = 198 bits (100), Expect = 4e-48
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 637 aggtcctggcccagactcgcctgggaaatggacggtggatgactccagagaacattcagg 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34881156 aggtcctggcccagactcgcctgggaaatggacggtggatgactccagagaacattcagg 34881215
Query: 697 agatgtactctgcgatcaaggctgaccctgatggtgatgg 736
||||||||||||||||||||||||||||||||||||||||
Sbjct: 34881216 agatgtactctgcgatcaaggctgaccctgatggtgatgg 34881255
Score = 167 bits (84), Expect = 1e-38
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 364 aggtgggtcatgagcgcaaggtccagctggttgccgacagggatcacttcatccgaaccc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34877592 aggtgggtcatgagcgcaaggtccagctggttgccgacagggatcacttcatccgaaccc 34877651
Query: 424 tcagcctcaagccgctgctcttcg 447
||||||||||||||||||||||||
Sbjct: 34877652 tcagcctcaagccgctgctcttcg 34877675
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 22,469,256
Number of extensions: 96
Number of successful extensions: 96
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 6
Length of query: 1017
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 996
Effective length of database: 2,808,413,156
Effective search space: 2797179503376
Effective search space used: 2797179503376
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)