Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012741
(992 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092465.1| serine dehydratase-like [Bos taurus]. 434 e-122
Alignment gi|NP_001069130.1| L-serine dehydratase/L-threonine deaminase [... 283 2e-76
Alignment gi|XP_001256841.1| PREDICTED: L-serine dehydratase/L-threonine ... 237 1e-62
Alignment gi|NP_001071433.1| serine racemase [Bos taurus]. 60 2e-09
>ref|NP_001092465.1| serine dehydratase-like [Bos taurus].
Length = 329
Score = 434 bits (1116), Expect = e-122
Identities = 217/300 (72%), Positives = 236/300 (78%)
Frame = +3
Query: 93 MEASLTKCARGKPFHIVTPLLESWPLSQMAGTPVLLKYENVQPTGSFKIRGIGHFCQEMV 272
M++ L +CA G+PFHIVTPLLESW LSQ+AG PV LKYENVQP GSFKIRGIGHFCQE+
Sbjct: 1 MKSPLEECAEGEPFHIVTPLLESWALSQVAGMPVFLKYENVQPAGSFKIRGIGHFCQEVA 60
Query: 273 KRGYRHFVCPSGSNAGIATAYAARNLGIPATIVLPESTSLQVVRRLQGEGAEVQLTGKVW 452
K+G RH VC SG NAGIA AYAAR L IPATIVLPE TS++VV+RLQGEGAEVQLTGK+W
Sbjct: 61 KKGCRHLVCSSGGNAGIAAAYAARKLRIPATIVLPEGTSVKVVKRLQGEGAEVQLTGKIW 120
Query: 453 DEANLRAQELAKNDGWVNVPPFDHPLIWEGHSSLVHELKAELRTPPXXXXXXXXXXXXXX 632
+EANLRAQELAKNDGWVN+PPFDHPLIWEGH SLV ELKA L TPP
Sbjct: 121 EEANLRAQELAKNDGWVNLPPFDHPLIWEGHVSLVRELKAALGTPPGALVLAVGGGGLLA 180
Query: 633 XXXXXXXXXXWQHVPIIAMETQGAHCFNAAVKAGRLVTLPDITSVAKCLGAKTVAARALA 812
WQHVPIIAMETQGAHCFNAA+KAG+LVTLP ITS+AK LGA+TVAARAL
Sbjct: 181 GVSAGLAEVGWQHVPIIAMETQGAHCFNAAIKAGKLVTLPGITSLAKSLGARTVAARALE 240
Query: 813 CTKEFEIFXXXXXXXXXXXXXQRFLDDQRMLVEPACGAALAAIYSGLLGRLQAEGRLRPS 992
CTKEF IF QRFLDD+R LVEPACGAALAAIYSGLLG+LQAEG L PS
Sbjct: 241 CTKEFRIFSEVVEDAEAVSAVQRFLDDERTLVEPACGAALAAIYSGLLGKLQAEGHLCPS 300
>ref|NP_001069130.1| L-serine dehydratase/L-threonine deaminase [Bos taurus].
Length = 327
Score = 283 bits (723), Expect = 2e-76
Identities = 145/289 (50%), Positives = 190/289 (65%), Gaps = 1/289 (0%)
Frame = +3
Query: 123 GKPFHIVTPLLESWPLSQMAGTPVLLKYENVQPTGSFKIRGIGHFCQEMVKRGYRHFVCP 302
G+P H+ TP+ +S LS++AGT LK ++ QP+GSFKIRGIGH C+ +RG HFVC
Sbjct: 4 GRPLHMETPVRDSMTLSKVAGTTAYLKLDSAQPSGSFKIRGIGHLCKMWAERGCEHFVCS 63
Query: 303 SGSNAGIATAYAARNLGIPATIVLPESTSLQVVRRLQGEGAEVQLTGKVWDEANLRAQEL 482
S NAG+A AYAAR LGIP+TIV+P +T ++RL+ EGA V++ G+ DEA A++L
Sbjct: 64 SAGNAGMAAAYAARKLGIPSTIVVPSTTPALTIQRLKNEGATVKVVGETLDEAIRVAKDL 123
Query: 483 AKND-GWVNVPPFDHPLIWEGHSSLVHELKAELRTPPXXXXXXXXXXXXXXXXXXXXXXX 659
KN+ GWV VPPFD PLIWEGHSS+V ELK + P
Sbjct: 124 EKNNSGWVYVPPFDDPLIWEGHSSIVKELKETMTEKPGAIVLAVGGGGLLCGVVQGLAEV 183
Query: 660 XWQHVPIIAMETQGAHCFNAAVKAGRLVTLPDITSVAKCLGAKTVAARALACTKEFEIFX 839
W+ VP+I MET GA F+A+ KAG+LVTLP ITSVAK LG TVAA+A+ +E IF
Sbjct: 184 GWRDVPVITMETIGAESFHASTKAGKLVTLPCITSVAKALGVTTVAAQAMKVYREHPIFS 243
Query: 840 XXXXXXXXXXXXQRFLDDQRMLVEPACGAALAAIYSGLLGRLQAEGRLR 986
++F+DD+++LVEPACGAALAA+YS ++ +LQ EG+LR
Sbjct: 244 EVVSDQEAVAALEKFVDDEKILVEPACGAALAAVYSNVIQKLQGEGKLR 292
>ref|XP_001256841.1| PREDICTED: L-serine dehydratase/L-threonine deaminase-like, partial
[Bos taurus].
Length = 259
Score = 237 bits (605), Expect = 1e-62
Identities = 123/239 (51%), Positives = 157/239 (65%), Gaps = 1/239 (0%)
Frame = +3
Query: 123 GKPFHIVTPLLESWPLSQMAGTPVLLKYENVQPTGSFKIRGIGHFCQEMVKRGYRHFVCP 302
G+P H+ TP+ +S LS++AGT V LK ++ QP+GSFKIRGIGH C+ +RG HFVC
Sbjct: 4 GRPLHMETPVRDSMTLSKVAGTTVYLKLDSAQPSGSFKIRGIGHLCKMWAERGCEHFVCS 63
Query: 303 SGSNAGIATAYAARNLGIPATIVLPESTSLQVVRRLQGEGAEVQLTGKVWDEANLRAQEL 482
S NAG+A AYAAR LGIP+TIV+P +T ++RL+ EGA V++ G+ DEA A++L
Sbjct: 64 SAGNAGMAAAYAARKLGIPSTIVVPSTTPALTIQRLKNEGATVKVVGETLDEAIRVAKDL 123
Query: 483 AKND-GWVNVPPFDHPLIWEGHSSLVHELKAELRTPPXXXXXXXXXXXXXXXXXXXXXXX 659
KN+ GWV VPPFD PLIWEGHSS+V ELK + P
Sbjct: 124 EKNNSGWVYVPPFDDPLIWEGHSSIVKELKETMTEKPGAIVLAVGGGGLLCGVVQGLAEV 183
Query: 660 XWQHVPIIAMETQGAHCFNAAVKAGRLVTLPDITSVAKCLGAKTVAARALACTKEFEIF 836
W+ VP+I MET GA F+A+ KAG+LVTLP ITSVAK LG TVAA+A+ +E IF
Sbjct: 184 GWRDVPVITMETIGAESFHASTKAGKLVTLPCITSVAKALGVTTVAAQAMKVYREHPIF 242
>ref|NP_001071433.1| serine racemase [Bos taurus].
Length = 334
Score = 60.5 bits (145), Expect = 2e-09
Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 4/151 (2%)
Frame = +3
Query: 126 KPFHIVTPLLESWPLSQMAGTPVLLKYENVQPTGSFKIRGIGHFCQEMV----KRGYRHF 293
+ F +TP+L S L+Q+ G + K E Q TGSFKIRG + + ++ + R
Sbjct: 20 RDFIHLTPVLTSSILNQITGRNLFFKCELFQKTGSFKIRGALNAIRGLISAHPEEKPRAV 79
Query: 294 VCPSGSNAGIATAYAARNLGIPATIVLPESTSLQVVRRLQGEGAEVQLTGKVWDEANLRA 473
V S N G A ++AAR GIPA +++PE+ +Q GA + + + +
Sbjct: 80 VAHSSGNHGQALSFAARLEGIPAYVIVPETAPNCKKLAIQAYGASIVYSEQSEESRENIT 139
Query: 474 QELAKNDGWVNVPPFDHPLIWEGHSSLVHEL 566
+ +A+ + V P P + G ++ E+
Sbjct: 140 KRIAEETEGIMVHPNQEPAVIAGQGTIAMEV 170
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,545,510
Number of extensions: 1324299
Number of successful extensions: 7691
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 7328
Number of HSP's successfully gapped: 4
Length of query: 330
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 227
Effective length of database: 14,273,310
Effective search space: 3240041370
Effective search space used: 3240041370
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-012741
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012741
(992 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_543408.2| PREDICTED: similar to serine dehydratase-like [... 411 e-115
Alignment gi|XP_543407.2| PREDICTED: similar to serine dehydratase [Canis... 278 4e-75
Alignment gi|XP_868499.1| PREDICTED: similar to Serine racemase isoform 2... 58 2e-08
Alignment gi|XP_548320.1| PREDICTED: similar to Serine racemase isoform 1... 57 2e-08
>ref|XP_543408.2| PREDICTED: similar to serine dehydratase-like [Canis familiaris].
Length = 329
Score = 411 bits (1056), Expect = e-115
Identities = 210/297 (70%), Positives = 228/297 (76%)
Frame = +3
Query: 93 MEASLTKCARGKPFHIVTPLLESWPLSQMAGTPVLLKYENVQPTGSFKIRGIGHFCQEMV 272
M+ S T CA+ + FH+VTPLLESW LSQ+AG V LK ENVQP GSFKIRGIGHFCQE+
Sbjct: 1 MDHSRTGCAKAEHFHVVTPLLESWALSQVAGVTVFLKCENVQPAGSFKIRGIGHFCQEVA 60
Query: 273 KRGYRHFVCPSGSNAGIATAYAARNLGIPATIVLPESTSLQVVRRLQGEGAEVQLTGKVW 452
K+G RH VC SG NAGIA AYAAR LGIPATIVLPE TS QVV+RLQGEGAEVQLTGKVW
Sbjct: 61 KKGCRHLVCSSGGNAGIAAAYAARKLGIPATIVLPEGTSPQVVKRLQGEGAEVQLTGKVW 120
Query: 453 DEANLRAQELAKNDGWVNVPPFDHPLIWEGHSSLVHELKAELRTPPXXXXXXXXXXXXXX 632
DEA+L+AQELAK DGWVNV PFDH LIWEGH+SLV ELKA L TPP
Sbjct: 121 DEASLKAQELAKRDGWVNVHPFDHRLIWEGHASLVRELKAALGTPPGALVLAVGGGGLLA 180
Query: 633 XXXXXXXXXXWQHVPIIAMETQGAHCFNAAVKAGRLVTLPDITSVAKCLGAKTVAARALA 812
WQHVPIIA+ET+GAHCFNAA+KAGRLVTLP+ITSVAK LGAKTVAARAL
Sbjct: 181 GVSAGLAEVGWQHVPIIAVETRGAHCFNAAIKAGRLVTLPEITSVAKSLGAKTVAARALE 240
Query: 813 CTKEFEIFXXXXXXXXXXXXXQRFLDDQRMLVEPACGAALAAIYSGLLGRLQAEGRL 983
CT+E EI QRFLDD+R+LVEPACGAALA IYSGLL RLQAEGRL
Sbjct: 241 CTQELEIISEVVEDVQAVSAVQRFLDDERILVEPACGAALAVIYSGLLERLQAEGRL 297
>ref|XP_543407.2| PREDICTED: similar to serine dehydratase [Canis familiaris].
Length = 327
Score = 278 bits (712), Expect = 4e-75
Identities = 144/289 (49%), Positives = 189/289 (65%), Gaps = 1/289 (0%)
Frame = +3
Query: 123 GKPFHIVTPLLESWPLSQMAGTPVLLKYENVQPTGSFKIRGIGHFCQEMVKRGYRHFVCP 302
G+P H+ TP+ +S LS++AGT V LK ++ QP+GSFKIRGIGH C+ ++G HFVC
Sbjct: 4 GEPLHVKTPIRDSMSLSKVAGTSVYLKMDSAQPSGSFKIRGIGHLCKMWAEQGCEHFVCS 63
Query: 303 SGSNAGIATAYAARNLGIPATIVLPESTSLQVVRRLQGEGAEVQLTGKVWDEANLRAQEL 482
S NAG+A AYAAR LGIPATIV+P +T + RL+ EGA V++ G++ DEA A+ L
Sbjct: 64 SAGNAGMAAAYAARKLGIPATIVVPSTTPALTIERLKNEGAIVKVVGEMLDEAFELAKAL 123
Query: 483 AKND-GWVNVPPFDHPLIWEGHSSLVHELKAELRTPPXXXXXXXXXXXXXXXXXXXXXXX 659
AKN+ GWV +PPFD PLIWEGH+S+V ELK L P
Sbjct: 124 AKNNPGWVYIPPFDDPLIWEGHTSIVKELKETLSAKPGAIALSVGGGGLLCGVVQGLQEV 183
Query: 660 XWQHVPIIAMETQGAHCFNAAVKAGRLVTLPDITSVAKCLGAKTVAARALACTKEFEIFX 839
W VP+IAMET GAH F+AA AG+LV+L +TSVAK L KTV A+AL +E IF
Sbjct: 184 GWGDVPVIAMETAGAHSFHAATTAGKLVSLSQVTSVAKALCVKTVGAQALKLFQEHPIFS 243
Query: 840 XXXXXXXXXXXXQRFLDDQRMLVEPACGAALAAIYSGLLGRLQAEGRLR 986
++F+DD+++LVEPACGAALAA+YS ++ +LQ EG+L+
Sbjct: 244 EVISDQEAVAAIEKFVDDEKILVEPACGAALAAVYSRVVQKLQGEGKLQ 292
>ref|XP_868499.1| PREDICTED: similar to Serine racemase isoform 2 [Canis familiaris].
Length = 314
Score = 57.8 bits (138), Expect = 2e-08
Identities = 49/155 (31%), Positives = 76/155 (49%), Gaps = 6/155 (3%)
Frame = +3
Query: 141 VTPLLESWPLSQMAGTPVLLKYENVQPTGSFKIRG----IGHFCQEMVKRGYRHFVCPSG 308
+TP+L S+ L+Q+ G + K E Q TGSFKIRG I + + V S
Sbjct: 25 LTPVLTSFILNQVTGRNLFFKCELFQKTGSFKIRGAINAIKGLTPATSEDKPKAVVTHSS 84
Query: 309 SNAGIATAYAARNLGIPATIVLPESTSLQVVRRLQGEGAEVQLTGKVWDEA--NLRAQEL 482
N G A AYAA+ GIPA IV+P++ +Q GA + + + DE+ NL + +
Sbjct: 85 GNHGQALAYAAKLEGIPAYIVVPQTAPNCKKLAIQAYGASI-VYSEQNDESRENLTRRIM 143
Query: 483 AKNDGWVNVPPFDHPLIWEGHSSLVHELKAELRTP 587
+ +G + V P P + G ++ E+ + P
Sbjct: 144 EETEG-IMVHPNQEPAVIAGQGTIAMEVLNQALRP 177
>ref|XP_548320.1| PREDICTED: similar to Serine racemase isoform 1 [Canis familiaris].
Length = 339
Score = 57.4 bits (137), Expect = 2e-08
Identities = 48/148 (32%), Positives = 74/148 (50%), Gaps = 6/148 (4%)
Frame = +3
Query: 141 VTPLLESWPLSQMAGTPVLLKYENVQPTGSFKIRG----IGHFCQEMVKRGYRHFVCPSG 308
+TP+L S+ L+Q+ G + K E Q TGSFKIRG I + + V S
Sbjct: 25 LTPVLTSFILNQVTGRNLFFKCELFQKTGSFKIRGAINAIKGLTPATSEDKPKAVVTHSS 84
Query: 309 SNAGIATAYAARNLGIPATIVLPESTSLQVVRRLQGEGAEVQLTGKVWDEA--NLRAQEL 482
N G A AYAA+ GIPA IV+P++ +Q GA + + + DE+ NL + +
Sbjct: 85 GNHGQALAYAAKLEGIPAYIVVPQTAPNCKKLAIQAYGASI-VYSEQNDESRENLTRRIM 143
Query: 483 AKNDGWVNVPPFDHPLIWEGHSSLVHEL 566
+ +G + V P P + G ++ E+
Sbjct: 144 EETEG-IMVHPNQEPAVIAGQGTIAMEV 170
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,130,647
Number of extensions: 1354711
Number of successful extensions: 7703
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 7386
Number of HSP's successfully gapped: 4
Length of query: 330
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 227
Effective length of database: 15,440,896
Effective search space: 3505083392
Effective search space used: 3505083392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012741
(992 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928354.1| PREDICTED: serine dehydratase-like isoform 1... 531 e-151
Alignment gi|XP_001928337.1| PREDICTED: l-serine dehydratase/L-threonine ... 277 6e-75
>ref|XP_001928354.1| PREDICTED: serine dehydratase-like isoform 1 [Sus scrofa].
Length = 335
Score = 531 bits (1367), Expect = e-151
Identities = 268/306 (87%), Positives = 268/306 (87%)
Frame = +3
Query: 75 MQVDAGMEASLTKCARGKPFHIVTPLLESWPLSQMAGTPVLLKYENVQPTGSFKIRGIGH 254
MQVDAGMEASL KCARGKPFHIVTPLLESWPLSQMAGTPVLLKYENVQPTGSFKIRGIGH
Sbjct: 1 MQVDAGMEASLAKCARGKPFHIVTPLLESWPLSQMAGTPVLLKYENVQPTGSFKIRGIGH 60
Query: 255 FCQEMVKRGYRHFVCPSGSNAGIATAYAARNLGIPATIVLPESTSLQVVRRLQGEGAEVQ 434
FCQEMVKRGYRHFVCPSGSNAGIATAYAARNLGIPATIVLPESTSLQVVRRLQGEGAEVQ
Sbjct: 61 FCQEMVKRGYRHFVCPSGSNAGIATAYAARNLGIPATIVLPESTSLQVVRRLQGEGAEVQ 120
Query: 435 LTGKVWDEANLRAQELAKNDGWVNVPPFDHPLIWEGHSSLVHELKAELRTPPXXXXXXXX 614
LTGKVWDEANLRAQELAKNDGWVNVPPFDHPLIWEGHSSLVHELKAELRTPP
Sbjct: 121 LTGKVWDEANLRAQELAKNDGWVNVPPFDHPLIWEGHSSLVHELKAELRTPPGALVLAVG 180
Query: 615 XXXXXXXXXXXXXXXXWQHVPIIAMETQGAHCFNAAVKAGRLVTLPDITSVAKCLGAKTV 794
WQHVPIIAMETQGAHCFNAAVKAGRLVTLPDITSVAKCLGAKTV
Sbjct: 181 GGGLLAGVSAGLAEVGWQHVPIIAMETQGAHCFNAAVKAGRLVTLPDITSVAKCLGAKTV 240
Query: 795 AARALACTKEFEIFXXXXXXXXXXXXXQRFLDDQRMLVEPACGAALAAIYSGLLGRLQAE 974
AARALACTKEFEIF QRFLDDQRMLVEPACGAALAAIYSGLLGRLQAE
Sbjct: 241 AARALACTKEFEIFSEVVEDVEAVSAVQRFLDDQRMLVEPACGAALAAIYSGLLGRLQAE 300
Query: 975 GRLRPS 992
GRLRPS
Sbjct: 301 GRLRPS 306
>ref|XP_001928337.1| PREDICTED: l-serine dehydratase/L-threonine deaminase [Sus scrofa].
Length = 328
Score = 277 bits (709), Expect = 6e-75
Identities = 144/290 (49%), Positives = 188/290 (64%), Gaps = 1/290 (0%)
Frame = +3
Query: 117 ARGKPFHIVTPLLESWPLSQMAGTPVLLKYENVQPTGSFKIRGIGHFCQEMVKRGYRHFV 296
A G+P H+ TP+ +S LS++AGT V LK E+ QP+GSFKIRGIGH C+ +RG HFV
Sbjct: 2 ASGQPLHVRTPIRDSMTLSKVAGTTVYLKLESSQPSGSFKIRGIGHLCKTWAERGCEHFV 61
Query: 297 CPSGSNAGIATAYAARNLGIPATIVLPESTSLQVVRRLQGEGAEVQLTGKVWDEANLRAQ 476
C S NAG+A AYAAR LGIPA IV+P +T ++RL+ EGA V++ G+ DEA A+
Sbjct: 62 CSSAGNAGLAAAYAARKLGIPALIVVPSTTPALTIQRLKNEGAMVKVVGETLDEAIKLAK 121
Query: 477 ELAKND-GWVNVPPFDHPLIWEGHSSLVHELKAELRTPPXXXXXXXXXXXXXXXXXXXXX 653
+L KN+ WV VPPFD PLIWEGH+S+V ELK + P
Sbjct: 122 DLVKNNSNWVYVPPFDDPLIWEGHASIVKELKETMSAKPGAIVLAVGGGGLLSGVAQGLL 181
Query: 654 XXXWQHVPIIAMETQGAHCFNAAVKAGRLVTLPDITSVAKCLGAKTVAARALACTKEFEI 833
W VPI+A+ET GA FNA+ KAG+LVTLP ITSVAK LG TV A+A+ +E +
Sbjct: 182 EVGWGDVPILAIETIGADSFNASTKAGKLVTLPRITSVAKALGVTTVTAQAMKVFQEQPV 241
Query: 834 FXXXXXXXXXXXXXQRFLDDQRMLVEPACGAALAAIYSGLLGRLQAEGRL 983
F ++F+DD+++LVEPACGAALAA+YS ++ +LQ EG+L
Sbjct: 242 FSEVVSDQEAVAALEKFVDDEKILVEPACGAALAAVYSQVVQKLQGEGKL 291
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,482,160
Number of extensions: 854946
Number of successful extensions: 5087
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4828
Number of HSP's successfully gapped: 2
Length of query: 330
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 231
Effective length of database: 8,879,129
Effective search space: 2051078799
Effective search space used: 2051078799
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012741
(992 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598663.2| serine dehydratase-like [Mus musculus]. 402 e-112
Alignment gi|NP_663540.1| L-serine dehydratase/L-threonine deaminase [Mus... 284 9e-77
Alignment gi|NP_001156783.1| serine racemase [Mus musculus]. 57 2e-08
Alignment gi|NP_038789.1| serine racemase [Mus musculus]. 57 2e-08
>ref|NP_598663.2| serine dehydratase-like [Mus musculus].
Length = 329
Score = 402 bits (1033), Expect = e-112
Identities = 204/297 (68%), Positives = 223/297 (75%)
Frame = +3
Query: 93 MEASLTKCARGKPFHIVTPLLESWPLSQMAGTPVLLKYENVQPTGSFKIRGIGHFCQEMV 272
ME +L + +PFH VTPLLESW LSQ+AG PV LKYENVQ GSFKIRGIGHFCQ+M
Sbjct: 1 MEGALAERVGAEPFHRVTPLLESWALSQVAGMPVFLKYENVQIAGSFKIRGIGHFCQQMA 60
Query: 273 KRGYRHFVCPSGSNAGIATAYAARNLGIPATIVLPESTSLQVVRRLQGEGAEVQLTGKVW 452
KRG RH VC SG NAGIA AY+AR LGIP TIVLPE TS+QVVRRL+GEGAEVQLTGKVW
Sbjct: 61 KRGCRHLVCSSGGNAGIAAAYSARKLGIPVTIVLPEGTSVQVVRRLEGEGAEVQLTGKVW 120
Query: 453 DEANLRAQELAKNDGWVNVPPFDHPLIWEGHSSLVHELKAELRTPPXXXXXXXXXXXXXX 632
DEAN++AQELA DGWVNV PFDHPLIWEGH+SLV ELK L TPP
Sbjct: 121 DEANVKAQELATRDGWVNVSPFDHPLIWEGHASLVRELKESLGTPPGAVVLAVGGGGLLA 180
Query: 633 XXXXXXXXXXWQHVPIIAMETQGAHCFNAAVKAGRLVTLPDITSVAKCLGAKTVAARALA 812
WQHVPI+AMET+GAH FN+A++AGR VTLPDITSVAK LGAKTVAAR L
Sbjct: 181 GVTAGLLEVGWQHVPIVAMETRGAHSFNSALQAGRPVTLPDITSVAKSLGAKTVAARTLE 240
Query: 813 CTKEFEIFXXXXXXXXXXXXXQRFLDDQRMLVEPACGAALAAIYSGLLGRLQAEGRL 983
C KE E+ QRFLDD+RMLVEPACGAALAAIYSG+L RLQAEGRL
Sbjct: 241 CAKECEVLSEVVEDREAVSAVQRFLDDERMLVEPACGAALAAIYSGILWRLQAEGRL 297
>ref|NP_663540.1| L-serine dehydratase/L-threonine deaminase [Mus musculus].
Length = 327
Score = 284 bits (726), Expect = 9e-77
Identities = 151/291 (51%), Positives = 189/291 (64%), Gaps = 1/291 (0%)
Frame = +3
Query: 117 ARGKPFHIVTPLLESWPLSQMAGTPVLLKYENVQPTGSFKIRGIGHFCQEMVKRGYRHFV 296
A + H+ TPL +S LS++AGT V LK ++ QP+GSFKIRGIGH C+ K+G RHFV
Sbjct: 2 AAQESLHVKTPLRDSMALSKLAGTSVFLKMDSSQPSGSFKIRGIGHLCKMKAKQGCRHFV 61
Query: 297 CPSGSNAGIATAYAARNLGIPATIVLPESTSLQVVRRLQGEGAEVQLTGKVWDEANLRAQ 476
C S NAG+ATAYAAR LGIPATIV+P +T + RL+ EGA V++ G++ DEA A+
Sbjct: 62 CSSAGNAGMATAYAARRLGIPATIVVPNTTPALTIERLKNEGATVEVVGEMLDEAIQVAK 121
Query: 477 ELAKND-GWVNVPPFDHPLIWEGHSSLVHELKAELRTPPXXXXXXXXXXXXXXXXXXXXX 653
L KN+ GWV + PFD PLIWEGH+SLV ELK L P
Sbjct: 122 ALEKNNPGWVYISPFDDPLIWEGHTSLVKELKETLSAKPGAIVLSVGGGGLLCGVVQGLR 181
Query: 654 XXXWQHVPIIAMETQGAHCFNAAVKAGRLVTLPDITSVAKCLGAKTVAARALACTKEFEI 833
W+ VPIIAMET GAH F+AA+K G+LVTLP ITSVAK LG TV A+ L E I
Sbjct: 182 EVGWEDVPIIAMETFGAHSFHAAIKEGKLVTLPKITSVAKALGVNTVGAQTLKLFYEHPI 241
Query: 834 FXXXXXXXXXXXXXQRFLDDQRMLVEPACGAALAAIYSGLLGRLQAEGRLR 986
F ++F+DD+++LVEPACGAALAA+YS ++ RLQ EGRL+
Sbjct: 242 FSEVISDQEAVSALEKFVDDEKILVEPACGAALAAVYSRVVCRLQDEGRLQ 292
>ref|NP_001156783.1| serine racemase [Mus musculus].
Length = 339
Score = 57.4 bits (137), Expect = 2e-08
Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 4/146 (2%)
Frame = +3
Query: 141 VTPLLESWPLSQMAGTPVLLKYENVQPTGSFKIRG----IGHFCQEMVKRGYRHFVCPSG 308
+TP+L S L+Q+AG + K E Q TGSFKIRG I + + + V S
Sbjct: 25 LTPVLTSSILNQIAGRNLFFKCELFQKTGSFKIRGALNAIRGLIPDTPEEKPKAVVTHSS 84
Query: 309 SNAGIATAYAARNLGIPATIVLPESTSLQVVRRLQGEGAEVQLTGKVWDEANLRAQELAK 488
N G A YAA+ GIPA IV+P++ +Q GA + + Q + +
Sbjct: 85 GNHGQALTYAAKLEGIPAYIVVPQTAPNCKKLAIQAYGASIVYCDPSDESREKVTQRIMQ 144
Query: 489 NDGWVNVPPFDHPLIWEGHSSLVHEL 566
+ V P P + G ++ E+
Sbjct: 145 ETEGILVHPNQEPAVIAGQGTIALEV 170
>ref|NP_038789.1| serine racemase [Mus musculus].
Length = 339
Score = 57.4 bits (137), Expect = 2e-08
Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 4/146 (2%)
Frame = +3
Query: 141 VTPLLESWPLSQMAGTPVLLKYENVQPTGSFKIRG----IGHFCQEMVKRGYRHFVCPSG 308
+TP+L S L+Q+AG + K E Q TGSFKIRG I + + + V S
Sbjct: 25 LTPVLTSSILNQIAGRNLFFKCELFQKTGSFKIRGALNAIRGLIPDTPEEKPKAVVTHSS 84
Query: 309 SNAGIATAYAARNLGIPATIVLPESTSLQVVRRLQGEGAEVQLTGKVWDEANLRAQELAK 488
N G A YAA+ GIPA IV+P++ +Q GA + + Q + +
Sbjct: 85 GNHGQALTYAAKLEGIPAYIVVPQTAPNCKKLAIQAYGASIVYCDPSDESREKVTQRIMQ 144
Query: 489 NDGWVNVPPFDHPLIWEGHSSLVHEL 566
+ V P P + G ++ E+
Sbjct: 145 ETEGILVHPNQEPAVIAGQGTIALEV 170
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,717,031
Number of extensions: 1111677
Number of successful extensions: 6000
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5689
Number of HSP's successfully gapped: 4
Length of query: 330
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 228
Effective length of database: 12,553,887
Effective search space: 2862286236
Effective search space used: 2862286236
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012741
(992 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_612441.1| serine dehydratase-like [Homo sapiens]. 416 e-116
Alignment gi|NP_006834.2| L-serine dehydratase/L-threonine deaminase [Hom... 290 1e-78
Alignment gi|NP_068766.1| serine racemase [Homo sapiens]. 59 9e-09
>ref|NP_612441.1| serine dehydratase-like [Homo sapiens].
Length = 329
Score = 416 bits (1070), Expect = e-116
Identities = 213/300 (71%), Positives = 231/300 (77%)
Frame = +3
Query: 93 MEASLTKCARGKPFHIVTPLLESWPLSQMAGTPVLLKYENVQPTGSFKIRGIGHFCQEMV 272
M+ + + A+ +PFH+VTPLLESW LSQ+AG PV LK ENVQP+GSFKIRGIGHFCQEM
Sbjct: 1 MDGPVAEHAKQEPFHVVTPLLESWALSQVAGMPVFLKCENVQPSGSFKIRGIGHFCQEMA 60
Query: 273 KRGYRHFVCPSGSNAGIATAYAARNLGIPATIVLPESTSLQVVRRLQGEGAEVQLTGKVW 452
K+G RH VC SG NAGIA AYAAR LGIPATIVLPESTSLQVV+RLQGEGAEVQLTGKVW
Sbjct: 61 KKGCRHLVCSSGGNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGEGAEVQLTGKVW 120
Query: 453 DEANLRAQELAKNDGWVNVPPFDHPLIWEGHSSLVHELKAELRTPPXXXXXXXXXXXXXX 632
DEANLRAQELAK DGW NVPPFDHPLIW+GH+SLV ELKA LRTPP
Sbjct: 121 DEANLRAQELAKRDGWENVPPFDHPLIWKGHASLVQELKAVLRTPPGALVLAVGGGGLLA 180
Query: 633 XXXXXXXXXXWQHVPIIAMETQGAHCFNAAVKAGRLVTLPDITSVAKCLGAKTVAARALA 812
WQHVPIIAMET GAHCFNAA+ AG+LVTLPDITSVAK LGAKTVAARAL
Sbjct: 181 GVVAGLLEVGWQHVPIIAMETHGAHCFNAAITAGKLVTLPDITSVAKSLGAKTVAARALE 240
Query: 813 CTKEFEIFXXXXXXXXXXXXXQRFLDDQRMLVEPACGAALAAIYSGLLGRLQAEGRLRPS 992
C + +I Q+ LDD+RMLVEPACGAALAAIYSGLL RLQAEG L PS
Sbjct: 241 CMQVCKIHSEVVEDTEAVSAVQQLLDDERMLVEPACGAALAAIYSGLLRRLQAEGCLPPS 300
>ref|NP_006834.2| L-serine dehydratase/L-threonine deaminase [Homo sapiens].
Length = 328
Score = 290 bits (742), Expect = 1e-78
Identities = 150/289 (51%), Positives = 191/289 (66%), Gaps = 1/289 (0%)
Frame = +3
Query: 123 GKPFHIVTPLLESWPLSQMAGTPVLLKYENVQPTGSFKIRGIGHFCQEMVKRGYRHFVCP 302
G+P H+ TP+ +S LS+MAGT V LK ++ QP+GSFKIRGIGHFC+ K+G HFVC
Sbjct: 4 GEPLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQGCAHFVCS 63
Query: 303 SGSNAGIATAYAARNLGIPATIVLPESTSLQVVRRLQGEGAEVQLTGKVWDEANLRAQEL 482
S NAG+A AYAAR LG+PATIV+P +T + RL+ EGA V++ G++ DEA A+ L
Sbjct: 64 SAGNAGMAAAYAARQLGVPATIVVPSTTPALTIERLKNEGATVKVVGELLDEAFELAKAL 123
Query: 483 AKND-GWVNVPPFDHPLIWEGHSSLVHELKAELRTPPXXXXXXXXXXXXXXXXXXXXXXX 659
AKN+ GWV +PPFD PLIWEGH+S+V ELK L P
Sbjct: 124 AKNNPGWVYIPPFDDPLIWEGHASIVKELKETLWEKPGAIALSVGGGGLLCGVVQGLQEV 183
Query: 660 XWQHVPIIAMETQGAHCFNAAVKAGRLVTLPDITSVAKCLGAKTVAARALACTKEFEIFX 839
W VP+IAMET GAH F+AA AG+LV+LP ITSVAK LG KTV A+AL +E IF
Sbjct: 184 GWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAKALGVKTVGAQALKLFQEHPIFS 243
Query: 840 XXXXXXXXXXXXQRFLDDQRMLVEPACGAALAAIYSGLLGRLQAEGRLR 986
++F+DD+++LVEPACGAALAA+YS ++ +LQ EG LR
Sbjct: 244 EVISDQEAVAAIEKFVDDEKILVEPACGAALAAVYSHVIQKLQLEGNLR 292
>ref|NP_068766.1| serine racemase [Homo sapiens].
Length = 340
Score = 58.5 bits (140), Expect = 9e-09
Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 4/146 (2%)
Frame = +3
Query: 141 VTPLLESWPLSQMAGTPVLLKYENVQPTGSFKIRG----IGHFCQEMVKRGYRHFVCPSG 308
+TP+L S L+Q+ G + K E Q TGSFKIRG + + ++R + V S
Sbjct: 25 LTPVLTSSILNQLTGRNLFFKCELFQKTGSFKIRGALNAVRSLVPDALERKPKAVVTHSS 84
Query: 309 SNAGIATAYAARNLGIPATIVLPESTSLQVVRRLQGEGAEVQLTGKVWDEANLRAQELAK 488
N G A YAA+ GIPA IV+P++ +Q GA + + A+ + +
Sbjct: 85 GNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSDESRENVAKRVTE 144
Query: 489 NDGWVNVPPFDHPLIWEGHSSLVHEL 566
+ V P P + G ++ E+
Sbjct: 145 ETEGIMVHPNQEPAVIAGQGTIALEV 170
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,466,563
Number of extensions: 1334373
Number of successful extensions: 7519
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7190
Number of HSP's successfully gapped: 3
Length of query: 330
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 227
Effective length of database: 14,901,872
Effective search space: 3382724944
Effective search space used: 3382724944
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012741
(992 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 454 e-125
>Sscrofa_Chr14
|| Length = 153851969
Score = 454 bits (229), Expect = e-125
Identities = 229/229 (100%)
Strand = Plus / Plus
Query: 535 gggaaggccacagtagcttggtgcacgagctgaaggcagagctgcggaccccaccaggtg 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40891591 gggaaggccacagtagcttggtgcacgagctgaaggcagagctgcggaccccaccaggtg 40891650
Query: 595 ccctggtgctggcagtggggggtggaggtctcctggctggggtgtcggccggtctggcag 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40891651 ccctggtgctggcagtggggggtggaggtctcctggctggggtgtcggccggtctggcag 40891710
Query: 655 aggtgggctggcagcatgtgcccattatcgccatggagactcaaggggcacactgtttca 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40891711 aggtgggctggcagcatgtgcccattatcgccatggagactcaaggggcacactgtttca 40891770
Query: 715 acgcagccgtcaaggcaggcaggctggtgacactgccagatatcaccag 763
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40891771 acgcagccgtcaaggcaggcaggctggtgacactgccagatatcaccag 40891819
Score = 383 bits (193), Expect = e-103
Identities = 196/197 (99%)
Strand = Plus / Plus
Query: 70 aggccatgcaggtggatgctgggatggaagcctctctgaccaagtgtgctcgggggaagc 129
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 40887580 aggccatgcaggtggatgctgggatggaagcctctctggccaagtgtgctcgggggaagc 40887639
Query: 130 ccttccacatagtcacacctctgctggagagctggccactgtcccagatggcaggcacac 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40887640 ccttccacatagtcacacctctgctggagagctggccactgtcccagatggcaggcacac 40887699
Query: 190 ctgtcctcctcaagtatgagaatgtgcagcccacaggctccttcaagatccgtggcatcg 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40887700 ctgtcctcctcaagtatgagaatgtgcagcccacaggctccttcaagatccgtggcatcg 40887759
Query: 250 ggcatttctgccaggag 266
|||||||||||||||||
Sbjct: 40887760 ggcatttctgccaggag 40887776
Score = 287 bits (145), Expect = 6e-75
Identities = 145/145 (100%)
Strand = Plus / Plus
Query: 304 cagggagcaacgcgggcattgctactgcttatgcggccaggaacctgggcatcccagcca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40888677 cagggagcaacgcgggcattgctactgcttatgcggccaggaacctgggcatcccagcca 40888736
Query: 364 ccattgtgctccctgagagcacctctctgcaggtggtgaggaggctgcagggggaggggg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40888737 ccattgtgctccctgagagcacctctctgcaggtggtgaggaggctgcagggggaggggg 40888796
Query: 424 ctgaggttcagctgactggaaaggt 448
|||||||||||||||||||||||||
Sbjct: 40888797 ctgaggttcagctgactggaaaggt 40888821
Score = 254 bits (128), Expect = 8e-65
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 761 cagtgtggccaagtgcctaggtgccaagacggtggctgcgcgggccctggcgtgtacaaa 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40894039 cagtgtggccaagtgcctaggtgccaagacggtggctgcgcgggccctggcgtgtacaaa 40894098
Query: 821 ggagtttgagatcttctctgaggtggtggaggatgttgaggctgtgagtgctgtgcagcg 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40894099 ggagtttgagatcttctctgaggtggtggaggatgttgaggctgtgagtgctgtgcagcg 40894158
Query: 881 gttcctgg 888
||||||||
Sbjct: 40894159 gttcctgg 40894166
Score = 208 bits (105), Expect = 4e-51
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 888 gatgaccagcgaatgttggtggagcctgcctgtggggcagccttagctgccatctactca 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40895456 gatgaccagcgaatgttggtggagcctgcctgtggggcagccttagctgccatctactca 40895515
Query: 948 ggcctcctggggaggctccaggctgagggccgcctgcgcccttcc 992
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40895516 ggcctcctggggaggctccaggctgagggccgcctgcgcccttcc 40895560
Score = 186 bits (94), Expect = 2e-44
Identities = 97/98 (98%)
Strand = Plus / Plus
Query: 445 aggtctgggatgaggccaatctgagagcacaagagttggccaagaatgatggctgggtga 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40890784 aggtctgggatgaggccaatctgagagcacaagagttggccaagaatgatggctgggtga 40890843
Query: 505 atgtccccccatttgaccaccccctgatatgggaaggc 542
|||||||||||||||||||||||||||||||| |||||
Sbjct: 40890844 atgtccccccatttgaccaccccctgatatggtaaggc 40890881
Score = 143 bits (72), Expect = 2e-31
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 1 gagcggtgctaaggcaagcttgtgggcagtgggctggggctgagctgctctggggacctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40882904 gagcggtgctaaggcaagcttgtgggcagtgggctggggctgagctgctctggggacctc 40882963
Query: 61 tggaaaagaagg 72
||||||||||||
Sbjct: 40882964 tggaaaagaagg 40882975
Score = 85.7 bits (43), Expect = 4e-14
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 265 agatggtcaaaagaggatacagacatttcgtgtgcccttcagg 307
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40887952 agatggtcaaaagaggatacagacatttcgtgtgcccttcagg 40887994
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,727,192
Number of extensions: 252
Number of successful extensions: 252
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 252
Number of HSP's successfully gapped: 8
Length of query: 992
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 971
Effective length of database: 2,808,413,156
Effective search space: 2726969174476
Effective search space used: 2726969174476
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)