Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012742
(1061 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_543408.2| PREDICTED: similar to serine dehydratase-like [... 182 5e-46
Alignment gi|XP_543407.2| PREDICTED: similar to serine dehydratase [Canis... 127 2e-29
Alignment gi|XP_868499.1| PREDICTED: similar to Serine racemase isoform 2... 54 3e-07
Alignment gi|XP_548320.1| PREDICTED: similar to Serine racemase isoform 1... 54 3e-07
>ref|XP_543408.2| PREDICTED: similar to serine dehydratase-like [Canis familiaris].
Length = 329
Score = 182 bits (462), Expect = 5e-46
Identities = 90/119 (75%), Positives = 98/119 (82%)
Frame = +1
Query: 94 MEASLAKCARGKPFHIVTPLLESWPLSQMAGTPVLLKYENVQPTGSFKIRGIGHFCQEMV 273
M+ S CA+ + FH+VTPLLESW LSQ+AG V LK ENVQP GSFKIRGIGHFCQE+
Sbjct: 1 MDHSRTGCAKAEHFHVVTPLLESWALSQVAGVTVFLKCENVQPAGSFKIRGIGHFCQEVA 60
Query: 274 KRGYRHFVCPSGSNAGIATAYAARNLGIPATIVLPESTSLQVVRRLQGEGAEVQLTGKV 450
K+G RH VC SG NAGIA AYAAR LGIPATIVLPE TS QVV+RLQGEGAEVQLTGKV
Sbjct: 61 KKGCRHLVCSSGGNAGIAAAYAARKLGIPATIVLPEGTSPQVVKRLQGEGAEVQLTGKV 119
>ref|XP_543407.2| PREDICTED: similar to serine dehydratase [Canis familiaris].
Length = 327
Score = 127 bits (319), Expect = 2e-29
Identities = 59/109 (54%), Positives = 80/109 (73%)
Frame = +1
Query: 124 GKPFHIVTPLLESWPLSQMAGTPVLLKYENVQPTGSFKIRGIGHFCQEMVKRGYRHFVCP 303
G+P H+ TP+ +S LS++AGT V LK ++ QP+GSFKIRGIGH C+ ++G HFVC
Sbjct: 4 GEPLHVKTPIRDSMSLSKVAGTSVYLKMDSAQPSGSFKIRGIGHLCKMWAEQGCEHFVCS 63
Query: 304 SGSNAGIATAYAARNLGIPATIVLPESTSLQVVRRLQGEGAEVQLTGKV 450
S NAG+A AYAAR LGIPATIV+P +T + RL+ EGA V++ G++
Sbjct: 64 SAGNAGMAAAYAARKLGIPATIVVPSTTPALTIERLKNEGAIVKVVGEM 112
>ref|XP_868499.1| PREDICTED: similar to Serine racemase isoform 2 [Canis familiaris].
Length = 314
Score = 53.5 bits (127), Expect = 3e-07
Identities = 38/101 (37%), Positives = 52/101 (51%), Gaps = 4/101 (3%)
Frame = +1
Query: 142 VTPLLESWPLSQMAGTPVLLKYENVQPTGSFKIRG----IGHFCQEMVKRGYRHFVCPSG 309
+TP+L S+ L+Q+ G + K E Q TGSFKIRG I + + V S
Sbjct: 25 LTPVLTSFILNQVTGRNLFFKCELFQKTGSFKIRGAINAIKGLTPATSEDKPKAVVTHSS 84
Query: 310 SNAGIATAYAARNLGIPATIVLPESTSLQVVRRLQGEGAEV 432
N G A AYAA+ GIPA IV+P++ +Q GA +
Sbjct: 85 GNHGQALAYAAKLEGIPAYIVVPQTAPNCKKLAIQAYGASI 125
>ref|XP_548320.1| PREDICTED: similar to Serine racemase isoform 1 [Canis familiaris].
Length = 339
Score = 53.5 bits (127), Expect = 3e-07
Identities = 38/101 (37%), Positives = 52/101 (51%), Gaps = 4/101 (3%)
Frame = +1
Query: 142 VTPLLESWPLSQMAGTPVLLKYENVQPTGSFKIRG----IGHFCQEMVKRGYRHFVCPSG 309
+TP+L S+ L+Q+ G + K E Q TGSFKIRG I + + V S
Sbjct: 25 LTPVLTSFILNQVTGRNLFFKCELFQKTGSFKIRGAINAIKGLTPATSEDKPKAVVTHSS 84
Query: 310 SNAGIATAYAARNLGIPATIVLPESTSLQVVRRLQGEGAEV 432
N G A AYAA+ GIPA IV+P++ +Q GA +
Sbjct: 85 GNHGQALAYAAKLEGIPAYIVVPQTAPNCKKLAIQAYGASI 125
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,972,770
Number of extensions: 1208159
Number of successful extensions: 4242
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4232
Number of HSP's successfully gapped: 4
Length of query: 353
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 249
Effective length of database: 15,407,560
Effective search space: 3836482440
Effective search space used: 3836482440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Animal-Genome cDNA 20110601C-012742
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012742
(1061 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092465.1| serine dehydratase-like [Bos taurus]. 192 4e-49
Alignment gi|XP_001256841.1| PREDICTED: L-serine dehydratase/L-threonine ... 127 1e-29
Alignment gi|NP_001069130.1| L-serine dehydratase/L-threonine deaminase [... 126 4e-29
Alignment gi|NP_001071433.1| serine racemase [Bos taurus]. 55 1e-07
>ref|NP_001092465.1| serine dehydratase-like [Bos taurus].
Length = 329
Score = 192 bits (488), Expect = 4e-49
Identities = 92/119 (77%), Positives = 103/119 (86%)
Frame = +1
Query: 94 MEASLAKCARGKPFHIVTPLLESWPLSQMAGTPVLLKYENVQPTGSFKIRGIGHFCQEMV 273
M++ L +CA G+PFHIVTPLLESW LSQ+AG PV LKYENVQP GSFKIRGIGHFCQE+
Sbjct: 1 MKSPLEECAEGEPFHIVTPLLESWALSQVAGMPVFLKYENVQPAGSFKIRGIGHFCQEVA 60
Query: 274 KRGYRHFVCPSGSNAGIATAYAARNLGIPATIVLPESTSLQVVRRLQGEGAEVQLTGKV 450
K+G RH VC SG NAGIA AYAAR L IPATIVLPE TS++VV+RLQGEGAEVQLTGK+
Sbjct: 61 KKGCRHLVCSSGGNAGIAAAYAARKLRIPATIVLPEGTSVKVVKRLQGEGAEVQLTGKI 119
>ref|XP_001256841.1| PREDICTED: L-serine dehydratase/L-threonine deaminase-like, partial
[Bos taurus].
Length = 259
Score = 127 bits (320), Expect = 1e-29
Identities = 59/108 (54%), Positives = 80/108 (74%)
Frame = +1
Query: 124 GKPFHIVTPLLESWPLSQMAGTPVLLKYENVQPTGSFKIRGIGHFCQEMVKRGYRHFVCP 303
G+P H+ TP+ +S LS++AGT V LK ++ QP+GSFKIRGIGH C+ +RG HFVC
Sbjct: 4 GRPLHMETPVRDSMTLSKVAGTTVYLKLDSAQPSGSFKIRGIGHLCKMWAERGCEHFVCS 63
Query: 304 SGSNAGIATAYAARNLGIPATIVLPESTSLQVVRRLQGEGAEVQLTGK 447
S NAG+A AYAAR LGIP+TIV+P +T ++RL+ EGA V++ G+
Sbjct: 64 SAGNAGMAAAYAARKLGIPSTIVVPSTTPALTIQRLKNEGATVKVVGE 111
>ref|NP_001069130.1| L-serine dehydratase/L-threonine deaminase [Bos taurus].
Length = 327
Score = 126 bits (316), Expect = 4e-29
Identities = 58/108 (53%), Positives = 79/108 (73%)
Frame = +1
Query: 124 GKPFHIVTPLLESWPLSQMAGTPVLLKYENVQPTGSFKIRGIGHFCQEMVKRGYRHFVCP 303
G+P H+ TP+ +S LS++AGT LK ++ QP+GSFKIRGIGH C+ +RG HFVC
Sbjct: 4 GRPLHMETPVRDSMTLSKVAGTTAYLKLDSAQPSGSFKIRGIGHLCKMWAERGCEHFVCS 63
Query: 304 SGSNAGIATAYAARNLGIPATIVLPESTSLQVVRRLQGEGAEVQLTGK 447
S NAG+A AYAAR LGIP+TIV+P +T ++RL+ EGA V++ G+
Sbjct: 64 SAGNAGMAAAYAARKLGIPSTIVVPSTTPALTIQRLKNEGATVKVVGE 111
>ref|NP_001071433.1| serine racemase [Bos taurus].
Length = 334
Score = 54.7 bits (130), Expect = 1e-07
Identities = 37/106 (34%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
Frame = +1
Query: 127 KPFHIVTPLLESWPLSQMAGTPVLLKYENVQPTGSFKIRGIGHFCQEMV----KRGYRHF 294
+ F +TP+L S L+Q+ G + K E Q TGSFKIRG + + ++ + R
Sbjct: 20 RDFIHLTPVLTSSILNQITGRNLFFKCELFQKTGSFKIRGALNAIRGLISAHPEEKPRAV 79
Query: 295 VCPSGSNAGIATAYAARNLGIPATIVLPESTSLQVVRRLQGEGAEV 432
V S N G A ++AAR GIPA +++PE+ +Q GA +
Sbjct: 80 VAHSSGNHGQALSFAARLEGIPAYVIVPETAPNCKKLAIQAYGASI 125
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,294,362
Number of extensions: 1179911
Number of successful extensions: 4280
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4265
Number of HSP's successfully gapped: 4
Length of query: 353
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 250
Effective length of database: 14,273,310
Effective search space: 3568327500
Effective search space used: 3568327500
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012742
(1061 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928354.1| PREDICTED: serine dehydratase-like isoform 1... 253 1e-67
Alignment gi|XP_001928337.1| PREDICTED: l-serine dehydratase/L-threonine ... 129 4e-30
>ref|XP_001928354.1| PREDICTED: serine dehydratase-like isoform 1 [Sus scrofa].
Length = 335
Score = 253 bits (647), Expect = 1e-67
Identities = 125/125 (100%), Positives = 125/125 (100%)
Frame = +1
Query: 76 MQVDAGMEASLAKCARGKPFHIVTPLLESWPLSQMAGTPVLLKYENVQPTGSFKIRGIGH 255
MQVDAGMEASLAKCARGKPFHIVTPLLESWPLSQMAGTPVLLKYENVQPTGSFKIRGIGH
Sbjct: 1 MQVDAGMEASLAKCARGKPFHIVTPLLESWPLSQMAGTPVLLKYENVQPTGSFKIRGIGH 60
Query: 256 FCQEMVKRGYRHFVCPSGSNAGIATAYAARNLGIPATIVLPESTSLQVVRRLQGEGAEVQ 435
FCQEMVKRGYRHFVCPSGSNAGIATAYAARNLGIPATIVLPESTSLQVVRRLQGEGAEVQ
Sbjct: 61 FCQEMVKRGYRHFVCPSGSNAGIATAYAARNLGIPATIVLPESTSLQVVRRLQGEGAEVQ 120
Query: 436 LTGKV 450
LTGKV
Sbjct: 121 LTGKV 125
>ref|XP_001928337.1| PREDICTED: l-serine dehydratase/L-threonine deaminase [Sus scrofa].
Length = 328
Score = 129 bits (323), Expect = 4e-30
Identities = 61/110 (55%), Positives = 80/110 (72%)
Frame = +1
Query: 118 ARGKPFHIVTPLLESWPLSQMAGTPVLLKYENVQPTGSFKIRGIGHFCQEMVKRGYRHFV 297
A G+P H+ TP+ +S LS++AGT V LK E+ QP+GSFKIRGIGH C+ +RG HFV
Sbjct: 2 ASGQPLHVRTPIRDSMTLSKVAGTTVYLKLESSQPSGSFKIRGIGHLCKTWAERGCEHFV 61
Query: 298 CPSGSNAGIATAYAARNLGIPATIVLPESTSLQVVRRLQGEGAEVQLTGK 447
C S NAG+A AYAAR LGIPA IV+P +T ++RL+ EGA V++ G+
Sbjct: 62 CSSAGNAGLAAAYAARKLGIPALIVVPSTTPALTIQRLKNEGAMVKVVGE 111
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,231,515
Number of extensions: 759186
Number of successful extensions: 2761
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2749
Number of HSP's successfully gapped: 2
Length of query: 353
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 253
Effective length of database: 8,854,232
Effective search space: 2240120696
Effective search space used: 2240120696
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012742
(1061 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598663.2| serine dehydratase-like [Mus musculus]. 184 1e-46
Alignment gi|NP_663540.1| L-serine dehydratase/L-threonine deaminase [Mus... 129 3e-30
Alignment gi|NP_001156783.1| serine racemase [Mus musculus]. 54 2e-07
Alignment gi|NP_038789.1| serine racemase [Mus musculus]. 54 2e-07
>ref|NP_598663.2| serine dehydratase-like [Mus musculus].
Length = 329
Score = 184 bits (467), Expect = 1e-46
Identities = 91/119 (76%), Positives = 99/119 (83%)
Frame = +1
Query: 94 MEASLAKCARGKPFHIVTPLLESWPLSQMAGTPVLLKYENVQPTGSFKIRGIGHFCQEMV 273
ME +LA+ +PFH VTPLLESW LSQ+AG PV LKYENVQ GSFKIRGIGHFCQ+M
Sbjct: 1 MEGALAERVGAEPFHRVTPLLESWALSQVAGMPVFLKYENVQIAGSFKIRGIGHFCQQMA 60
Query: 274 KRGYRHFVCPSGSNAGIATAYAARNLGIPATIVLPESTSLQVVRRLQGEGAEVQLTGKV 450
KRG RH VC SG NAGIA AY+AR LGIP TIVLPE TS+QVVRRL+GEGAEVQLTGKV
Sbjct: 61 KRGCRHLVCSSGGNAGIAAAYSARKLGIPVTIVLPEGTSVQVVRRLEGEGAEVQLTGKV 119
>ref|NP_663540.1| L-serine dehydratase/L-threonine deaminase [Mus musculus].
Length = 327
Score = 129 bits (325), Expect = 3e-30
Identities = 62/111 (55%), Positives = 81/111 (72%)
Frame = +1
Query: 118 ARGKPFHIVTPLLESWPLSQMAGTPVLLKYENVQPTGSFKIRGIGHFCQEMVKRGYRHFV 297
A + H+ TPL +S LS++AGT V LK ++ QP+GSFKIRGIGH C+ K+G RHFV
Sbjct: 2 AAQESLHVKTPLRDSMALSKLAGTSVFLKMDSSQPSGSFKIRGIGHLCKMKAKQGCRHFV 61
Query: 298 CPSGSNAGIATAYAARNLGIPATIVLPESTSLQVVRRLQGEGAEVQLTGKV 450
C S NAG+ATAYAAR LGIPATIV+P +T + RL+ EGA V++ G++
Sbjct: 62 CSSAGNAGMATAYAARRLGIPATIVVPNTTPALTIERLKNEGATVEVVGEM 112
>ref|NP_001156783.1| serine racemase [Mus musculus].
Length = 339
Score = 53.9 bits (128), Expect = 2e-07
Identities = 38/101 (37%), Positives = 52/101 (51%), Gaps = 4/101 (3%)
Frame = +1
Query: 142 VTPLLESWPLSQMAGTPVLLKYENVQPTGSFKIRG----IGHFCQEMVKRGYRHFVCPSG 309
+TP+L S L+Q+AG + K E Q TGSFKIRG I + + + V S
Sbjct: 25 LTPVLTSSILNQIAGRNLFFKCELFQKTGSFKIRGALNAIRGLIPDTPEEKPKAVVTHSS 84
Query: 310 SNAGIATAYAARNLGIPATIVLPESTSLQVVRRLQGEGAEV 432
N G A YAA+ GIPA IV+P++ +Q GA +
Sbjct: 85 GNHGQALTYAAKLEGIPAYIVVPQTAPNCKKLAIQAYGASI 125
>ref|NP_038789.1| serine racemase [Mus musculus].
Length = 339
Score = 53.9 bits (128), Expect = 2e-07
Identities = 38/101 (37%), Positives = 52/101 (51%), Gaps = 4/101 (3%)
Frame = +1
Query: 142 VTPLLESWPLSQMAGTPVLLKYENVQPTGSFKIRG----IGHFCQEMVKRGYRHFVCPSG 309
+TP+L S L+Q+AG + K E Q TGSFKIRG I + + + V S
Sbjct: 25 LTPVLTSSILNQIAGRNLFFKCELFQKTGSFKIRGALNAIRGLIPDTPEEKPKAVVTHSS 84
Query: 310 SNAGIATAYAARNLGIPATIVLPESTSLQVVRRLQGEGAEV 432
N G A YAA+ GIPA IV+P++ +Q GA +
Sbjct: 85 GNHGQALTYAAKLEGIPAYIVVPQTAPNCKKLAIQAYGASI 125
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,858,618
Number of extensions: 1013472
Number of successful extensions: 3318
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3304
Number of HSP's successfully gapped: 4
Length of query: 353
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 251
Effective length of database: 12,553,887
Effective search space: 3151025637
Effective search space used: 3151025637
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012742
(1061 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_612441.1| serine dehydratase-like [Homo sapiens]. 191 7e-49
Alignment gi|NP_006834.2| L-serine dehydratase/L-threonine deaminase [Hom... 133 2e-31
Alignment gi|NP_068766.1| serine racemase [Homo sapiens]. 55 8e-08
>ref|NP_612441.1| serine dehydratase-like [Homo sapiens].
Length = 329
Score = 191 bits (486), Expect = 7e-49
Identities = 94/119 (78%), Positives = 104/119 (87%)
Frame = +1
Query: 94 MEASLAKCARGKPFHIVTPLLESWPLSQMAGTPVLLKYENVQPTGSFKIRGIGHFCQEMV 273
M+ +A+ A+ +PFH+VTPLLESW LSQ+AG PV LK ENVQP+GSFKIRGIGHFCQEM
Sbjct: 1 MDGPVAEHAKQEPFHVVTPLLESWALSQVAGMPVFLKCENVQPSGSFKIRGIGHFCQEMA 60
Query: 274 KRGYRHFVCPSGSNAGIATAYAARNLGIPATIVLPESTSLQVVRRLQGEGAEVQLTGKV 450
K+G RH VC SG NAGIA AYAAR LGIPATIVLPESTSLQVV+RLQGEGAEVQLTGKV
Sbjct: 61 KKGCRHLVCSSGGNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGEGAEVQLTGKV 119
>ref|NP_006834.2| L-serine dehydratase/L-threonine deaminase [Homo sapiens].
Length = 328
Score = 133 bits (335), Expect = 2e-31
Identities = 61/109 (55%), Positives = 81/109 (74%)
Frame = +1
Query: 124 GKPFHIVTPLLESWPLSQMAGTPVLLKYENVQPTGSFKIRGIGHFCQEMVKRGYRHFVCP 303
G+P H+ TP+ +S LS+MAGT V LK ++ QP+GSFKIRGIGHFC+ K+G HFVC
Sbjct: 4 GEPLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQGCAHFVCS 63
Query: 304 SGSNAGIATAYAARNLGIPATIVLPESTSLQVVRRLQGEGAEVQLTGKV 450
S NAG+A AYAAR LG+PATIV+P +T + RL+ EGA V++ G++
Sbjct: 64 SAGNAGMAAAYAARQLGVPATIVVPSTTPALTIERLKNEGATVKVVGEL 112
>ref|NP_068766.1| serine racemase [Homo sapiens].
Length = 340
Score = 55.5 bits (132), Expect = 8e-08
Identities = 37/101 (36%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Frame = +1
Query: 142 VTPLLESWPLSQMAGTPVLLKYENVQPTGSFKIRG----IGHFCQEMVKRGYRHFVCPSG 309
+TP+L S L+Q+ G + K E Q TGSFKIRG + + ++R + V S
Sbjct: 25 LTPVLTSSILNQLTGRNLFFKCELFQKTGSFKIRGALNAVRSLVPDALERKPKAVVTHSS 84
Query: 310 SNAGIATAYAARNLGIPATIVLPESTSLQVVRRLQGEGAEV 432
N G A YAA+ GIPA IV+P++ +Q GA +
Sbjct: 85 GNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASI 125
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,318,797
Number of extensions: 1197908
Number of successful extensions: 4139
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4119
Number of HSP's successfully gapped: 3
Length of query: 353
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 249
Effective length of database: 14,868,908
Effective search space: 3702358092
Effective search space used: 3702358092
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012742
(1061 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 1459 0.0
>Sscrofa_Chr14
|| Length = 153851969
Score = 1459 bits (736), Expect = 0.0
Identities = 750/757 (99%)
Strand = Plus / Plus
Query: 305 cagggagcaacgcgggcattgctactgcttatgcggccaggaacctgggcatcccagcca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40888677 cagggagcaacgcgggcattgctactgcttatgcggccaggaacctgggcatcccagcca 40888736
Query: 365 ccattgtgctccctgagagcacctctctgcaggtggtgaggaggctgcagggggaggggg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40888737 ccattgtgctccctgagagcacctctctgcaggtggtgaggaggctgcagggggaggggg 40888796
Query: 425 ctgaggttcagctgactggaaaggtaaggaccccagaaagggaaaccagctgatcatggt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40888797 ctgaggttcagctgactggaaaggtaaggaccccagaaagggaaaccagctgatcatggt 40888856
Query: 485 tgtacaccttcacctccacctcatccctaagagattctgtctctttttccttttggtgaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40888857 tgtacaccttcacctccacctcatccctaagagattctgtctctttttccttttggtgaa 40888916
Query: 545 ttatgcctgggattagtcatcctaagagactgagctgttgagtgagtgaggtgaaatgta 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40888917 ttatgcctgggattagtcatcctaagagactgagctgttgagtgagtgaggtgaaatgta 40888976
Query: 605 cattaagggctgggacctccagacttgcctctccccacctcgagaagactttacatgcac 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40888977 cattaagggctgggacctccagacttgcctctccccacctcgagaagactttacatgcac 40889036
Query: 665 aaacccaagagaaacaggaagctggtgattaccaggagtgtagctgtctccctacatcct 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40889037 aaacccaagagaaacaggaagctggtgattaccaggagtgtagctgtctccctacatcct 40889096
Query: 725 tgctaacacgtggtattatccattaaaaatttttgccattcatttaaacaacagtataaa 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40889097 tgctaacacgtggtattatccattaaaaatttttgccattcatttaaacaacagtataaa 40889156
Query: 785 gaaagatgatgaggggcatcatctcccattctgagaacaccctgatatgaaaagatattc 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40889157 gaaagatgatgaggggcatcatctcccattctgagaacaccctgatatgaaaagatattc 40889216
Query: 845 atctgataaggctattgttggttcactttattaccaaagaaacagaaatgcaaccatgta 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40889217 atctgataaggctattgttggttcactttattaccaaagaaacagaaatgcaaccatgta 40889276
Query: 905 agtccttctaccctcctgggaagaagnnnnnnntccatccacccatccatcctttcaact 964
|||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 40889277 agtccttctaccctcctgggaagaagaaaaaaatccatccacccatccatcctttcaact 40889336
Query: 965 catattctctgagcacatactatactcctgcaccatgttaggcagtgctaaaaatataga 1024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40889337 catattctctgagcacatactatactcctgcaccatgttaggcagtgctaaaaatataga 40889396
Query: 1025 cacaatgagacatgatttctaccctcacagacctcaa 1061
|||||||||||||||||||||||||||||||||||||
Sbjct: 40889397 cacaatgagacatgatttctaccctcacagacctcaa 40889433
Score = 391 bits (197), Expect = e-106
Identities = 197/197 (100%)
Strand = Plus / Plus
Query: 71 aggccatgcaggtggatgctgggatggaagcctctctggccaagtgtgctcgggggaagc 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40887580 aggccatgcaggtggatgctgggatggaagcctctctggccaagtgtgctcgggggaagc 40887639
Query: 131 ccttccacatagtcacacctctgctggagagctggccactgtcccagatggcaggcacac 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40887640 ccttccacatagtcacacctctgctggagagctggccactgtcccagatggcaggcacac 40887699
Query: 191 ctgtcctcctcaagtatgagaatgtgcagcccacaggctccttcaagatccgtggcatcg 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40887700 ctgtcctcctcaagtatgagaatgtgcagcccacaggctccttcaagatccgtggcatcg 40887759
Query: 251 ggcatttctgccaggag 267
|||||||||||||||||
Sbjct: 40887760 ggcatttctgccaggag 40887776
Score = 145 bits (73), Expect = 6e-32
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 1 agagcggtgctaaggcaagcttgtgggcagtgggctggggctgagctgctctggggacct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40882903 agagcggtgctaaggcaagcttgtgggcagtgggctggggctgagctgctctggggacct 40882962
Query: 61 ctggaaaagaagg 73
|||||||||||||
Sbjct: 40882963 ctggaaaagaagg 40882975
Score = 85.7 bits (43), Expect = 5e-14
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 266 agatggtcaaaagaggatacagacatttcgtgtgcccttcagg 308
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40887952 agatggtcaaaagaggatacagacatttcgtgtgcccttcagg 40887994
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,006,108
Number of extensions: 1031
Number of successful extensions: 1031
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1030
Number of HSP's successfully gapped: 4
Length of query: 1061
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1040
Effective length of database: 2,808,413,156
Effective search space: 2920749682240
Effective search space used: 2920749682240
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)