Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012746
(1609 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001183978.1| reticulon-3 [Canis lupus familiaris]. 377 e-104
Alignment gi|XP_851322.1| PREDICTED: similar to Reticulon protein 3 (Neur... 276 5e-74
Alignment gi|XP_531828.1| PREDICTED: similar to reticulon 4 isoform C iso... 245 8e-65
Alignment gi|NP_001007132.1| reticulon-1 [Canis lupus familiaris]. 233 4e-61
Alignment gi|XP_865248.1| PREDICTED: similar to Reticulon 4 (Neurite outg... 230 3e-60
Alignment gi|XP_852236.1| PREDICTED: similar to Reticulon 4 (Neurite outg... 229 4e-60
Alignment gi|XP_541559.2| PREDICTED: similar to Reticulon protein 2 (Neur... 164 2e-40
Alignment gi|XP_852420.1| PREDICTED: similar to Reticulon protein 2 (Neur... 164 3e-40
Alignment gi|XP_865264.1| PREDICTED: similar to reticulon 4 isoform C iso... 157 2e-38
Alignment gi|XP_865314.1| PREDICTED: similar to reticulon 4 isoform C iso... 154 2e-37
>ref|NP_001183978.1| reticulon-3 [Canis lupus familiaris].
Length = 235
Score = 377 bits (967), Expect = e-104
Identities = 194/197 (98%), Positives = 197/197 (100%)
Frame = +1
Query: 319 KSCGSSCAVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRV 498
KSCGSSCAVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRV
Sbjct: 39 KSCGSSCAVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRV 98
Query: 499 YKSVIQAVQKSEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHINKALKLIIRLFLVEDLV 678
YKSVIQAVQKSEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHIN+ALKLIIRLFLVEDLV
Sbjct: 99 YKSVIQAVQKSEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHINRALKLIIRLFLVEDLV 158
Query: 679 DSLKLAVFMWLMTYVGAVFNGITLLILAELLIFSVPVVYEKYKTQIDHYVGIARDQTKSI 858
DSLKLAVFMWLMTYVGAVFNGITLLILAELLIFSVP+VYEKYKTQIDHYVGIARDQTKSI
Sbjct: 159 DSLKLAVFMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSI 218
Query: 859 VEKIQAKVPGIAKKKAE 909
VEKIQAK+PGIAKKKAE
Sbjct: 219 VEKIQAKLPGIAKKKAE 235
>ref|XP_851322.1| PREDICTED: similar to Reticulon protein 3 (Neuroendocrine-specific
protein-like 2) (NSP-like protein II) (NSPLII) [Canis
familiaris].
Length = 208
Score = 276 bits (705), Expect = 5e-74
Identities = 146/190 (76%), Positives = 157/190 (82%)
Frame = +1
Query: 334 SCAVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSVI 513
SCAV DLIFW+DVKKTGF +L+ SVTISFR+YKSVI
Sbjct: 31 SCAVQDLIFWKDVKKTGFQ----------------CHQCGFLLRPGSSVTISFRLYKSVI 74
Query: 514 QAVQKSEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHINKALKLIIRLFLVEDLVDSLKL 693
Q +QKSEEGHPFKAYLDVDI +SSEAFHN+VNAAMVHIN+ALKLIIRLFLVEDLVDSLKL
Sbjct: 75 QGIQKSEEGHPFKAYLDVDIAVSSEAFHNHVNAAMVHINRALKLIIRLFLVEDLVDSLKL 134
Query: 694 AVFMWLMTYVGAVFNGITLLILAELLIFSVPVVYEKYKTQIDHYVGIARDQTKSIVEKIQ 873
VF+WLMTYVGAVFNGITLLILAELLIFSVP+ EKYKTQIDHYVGIARDQTKSIVEKIQ
Sbjct: 135 NVFVWLMTYVGAVFNGITLLILAELLIFSVPIDCEKYKTQIDHYVGIARDQTKSIVEKIQ 194
Query: 874 AKVPGIAKKK 903
AK+PGI KKK
Sbjct: 195 AKLPGIEKKK 204
>ref|XP_531828.1| PREDICTED: similar to reticulon 4 isoform C isoform 1 [Canis
familiaris].
Length = 199
Score = 245 bits (626), Expect = 8e-65
Identities = 115/189 (60%), Positives = 154/189 (81%)
Frame = +1
Query: 343 VHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSVIQAV 522
V DL++WRD+KKTG VFG +L +LLSL FS++SV +Y++LALLSVTISFR+YK VIQA+
Sbjct: 12 VVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIVLALLSVTISFRIYKGVIQAI 71
Query: 523 QKSEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHINKALKLIIRLFLVEDLVDSLKLAVF 702
QKS+EGHPF+AYL+ ++ +S E Y N+A+ H+N +K + RLFLV+DLVDSLK AV
Sbjct: 72 QKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKFAVL 131
Query: 703 MWLMTYVGAVFNGITLLILAELLIFSVPVVYEKYKTQIDHYVGIARDQTKSIVEKIQAKV 882
MW+ TYVGA+FNG+TLLILA + +FSVPV+YE+++ QIDHY+G+A K + KIQAK+
Sbjct: 132 MWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKSVKDAMAKIQAKI 191
Query: 883 PGIAKKKAE 909
PG+ K+KAE
Sbjct: 192 PGL-KRKAE 199
>ref|NP_001007132.1| reticulon-1 [Canis lupus familiaris].
Length = 208
Score = 233 bits (594), Expect = 4e-61
Identities = 111/187 (59%), Positives = 149/187 (79%)
Frame = +1
Query: 349 DLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSVIQAVQK 528
DL++WRD+K+TG VFG+ L++L SL FSV+SVV+YL LA LS TISFR+YKSV+QAVQK
Sbjct: 23 DLLYWRDIKQTGIVFGSFLLLLFSLTQFSVVSVVAYLALAALSATISFRIYKSVLQAVQK 82
Query: 529 SEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHINKALKLIIRLFLVEDLVDSLKLAVFMW 708
++EGHPFK YL+++ITLS E Y + ++N LK + RLFLV+DLVDSLK AV MW
Sbjct: 83 TDEGHPFKTYLELEITLSQEQIQKYTDCLQFYVNNTLKELRRLFLVQDLVDSLKFAVLMW 142
Query: 709 LMTYVGAVFNGITLLILAELLIFSVPVVYEKYKTQIDHYVGIARDQTKSIVEKIQAKVPG 888
L+TYVGA+FNG+TLL++A + +F++PVVY K++ QID Y+G+ R ++V KIQAK+PG
Sbjct: 143 LLTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQIDQYLGLVRTHINTVVAKIQAKIPG 202
Query: 889 IAKKKAE 909
AK+ AE
Sbjct: 203 -AKRHAE 208
>ref|XP_865248.1| PREDICTED: similar to Reticulon 4 (Neurite outgrowth inhibitor)
(Nogo protein) (Foocen) (Neuroendocrine-specific
protein) (NSP) (Neuroendocrine specific protein C
homolog) (RTN-x) (Reticulon 5) isoform 4 [Canis
familiaris].
Length = 181
Score = 230 bits (586), Expect = 3e-60
Identities = 109/181 (60%), Positives = 146/181 (80%)
Frame = +1
Query: 367 DVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSVIQAVQKSEEGHP 546
D +KTG VFG +L +LLSL FS++SV +Y++LALLSVTISFR+YK VIQA+QKS+EGHP
Sbjct: 2 DCQKTGVVFGASLFLLLSLTVFSIVSVTAYIVLALLSVTISFRIYKGVIQAIQKSDEGHP 61
Query: 547 FKAYLDVDITLSSEAFHNYVNAAMVHINKALKLIIRLFLVEDLVDSLKLAVFMWLMTYVG 726
F+AYL+ ++ +S E Y N+A+ H+N +K + RLFLV+DLVDSLK AV MW+ TYVG
Sbjct: 62 FRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKFAVLMWVFTYVG 121
Query: 727 AVFNGITLLILAELLIFSVPVVYEKYKTQIDHYVGIARDQTKSIVEKIQAKVPGIAKKKA 906
A+FNG+TLLILA + +FSVPV+YE+++ QIDHY+G+A K + KIQAK+PG+ K+KA
Sbjct: 122 ALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKSVKDAMAKIQAKIPGL-KRKA 180
Query: 907 E 909
E
Sbjct: 181 E 181
>ref|XP_852236.1| PREDICTED: similar to Reticulon 4 (Neurite outgrowth inhibitor) (Nogo
protein) (Foocen) (Neuroendocrine-specific protein) (NSP)
(Neuroendocrine specific protein C homolog) (RTN-x)
(Reticulon 5) isoform 3 [Canis familiaris].
Length = 974
Score = 229 bits (585), Expect = 4e-60
Identities = 106/179 (59%), Positives = 143/179 (79%)
Frame = +1
Query: 331 SSCAVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSV 510
S +V DL++WRD+KKTG VFG +L +LLSL FS++SV +Y++LALLSVTISFR+YK V
Sbjct: 796 SKTSVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIVLALLSVTISFRIYKGV 855
Query: 511 IQAVQKSEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHINKALKLIIRLFLVEDLVDSLK 690
IQA+QKS+EGHPF+AYL+ ++ +S E Y N+A+ H+N +K + RLFLV+DLVDSLK
Sbjct: 856 IQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLK 915
Query: 691 LAVFMWLMTYVGAVFNGITLLILAELLIFSVPVVYEKYKTQIDHYVGIARDQTKSIVEK 867
AV MW+ TYVGA+FNG+TLLILA + +FSVPV+YE+++ QIDHY+G+A K + K
Sbjct: 916 FAVLMWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKSVKDAMAK 974
>ref|XP_541559.2| PREDICTED: similar to Reticulon protein 2 (Neuroendocrine-specific
protein-like 1) (NSP-like protein 1) (NSPLI) isoform 1
[Canis familiaris].
Length = 208
Score = 164 bits (416), Expect = 2e-40
Identities = 82/186 (44%), Positives = 122/186 (65%)
Frame = +1
Query: 331 SSCAVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSV 510
S V DL++W+D + +G VF ++ LL L FS++SV +++ L LL TIS RVY+ V
Sbjct: 4 SPSTVADLLYWKDTRTSGVVFTGLMVSLLCLLHFSIVSVTAHVALLLLCGTISLRVYRKV 63
Query: 511 IQAVQKSEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHINKALKLIIRLFLVEDLVDSLK 690
+QAV + + +PF+AYLDVD+TL+ E + + FLVEDLVDSLK
Sbjct: 64 LQAVHRGDGANPFQAYLDVDLTLTREQMERLSQQIASRVVSMAIQLRHFFLVEDLVDSLK 123
Query: 691 LAVFMWLMTYVGAVFNGITLLILAELLIFSVPVVYEKYKTQIDHYVGIARDQTKSIVEKI 870
LA+ +++T+VGAVFNG+TLLIL + +F+VP++Y +++ Q+D YVG+ +Q I K
Sbjct: 124 LALLFYILTFVGAVFNGLTLLILGVIGLFTVPLLYRQHQAQMDQYVGLVTNQLSHIKAKP 183
Query: 871 QAKVPG 888
AK+PG
Sbjct: 184 LAKIPG 189
>ref|XP_852420.1| PREDICTED: similar to Reticulon protein 2 (Neuroendocrine-specific
protein-like 1) (NSP-like protein 1) (NSPLI) isoform 2
[Canis familiaris].
Length = 205
Score = 164 bits (414), Expect = 3e-40
Identities = 81/182 (44%), Positives = 121/182 (66%)
Frame = +1
Query: 343 VHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSVIQAV 522
V DL++W+D + +G VF ++ LL L FS++SV +++ L LL TIS RVY+ V+QAV
Sbjct: 5 VADLLYWKDTRTSGVVFTGLMVSLLCLLHFSIVSVTAHVALLLLCGTISLRVYRKVLQAV 64
Query: 523 QKSEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHINKALKLIIRLFLVEDLVDSLKLAVF 702
+ + +PF+AYLDVD+TL+ E + + FLVEDLVDSLKLA+
Sbjct: 65 HRGDGANPFQAYLDVDLTLTREQMERLSQQIASRVVSMAIQLRHFFLVEDLVDSLKLALL 124
Query: 703 MWLMTYVGAVFNGITLLILAELLIFSVPVVYEKYKTQIDHYVGIARDQTKSIVEKIQAKV 882
+++T+VGAVFNG+TLLIL + +F+VP++Y +++ Q+D YVG+ +Q I K AK+
Sbjct: 125 FYILTFVGAVFNGLTLLILGVIGLFTVPLLYRQHQAQMDQYVGLVTNQLSHIKAKPLAKI 184
Query: 883 PG 888
PG
Sbjct: 185 PG 186
>ref|XP_865264.1| PREDICTED: similar to reticulon 4 isoform C isoform 5 [Canis
familiaris].
Length = 135
Score = 157 bits (398), Expect = 2e-38
Identities = 72/120 (60%), Positives = 99/120 (82%)
Frame = +1
Query: 343 VHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSVIQAV 522
V DL++WRD+KKTG VFG +L +LLSL FS++SV +Y++LALLSVTISFR+YK VIQA+
Sbjct: 12 VVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIVLALLSVTISFRIYKGVIQAI 71
Query: 523 QKSEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHINKALKLIIRLFLVEDLVDSLKLAVF 702
QKS+EGHPF+AYL+ ++ +S E Y N+A+ H+N +K + RLFLV+DLVDSLK+++F
Sbjct: 72 QKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKVSLF 131
>ref|XP_865314.1| PREDICTED: similar to reticulon 4 isoform C isoform 6 [Canis
familiaris].
Length = 131
Score = 154 bits (390), Expect = 2e-37
Identities = 71/117 (60%), Positives = 96/117 (82%)
Frame = +1
Query: 343 VHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSVIQAV 522
V DL++WRD+KKTG VFG +L +LLSL FS++SV +Y++LALLSVTISFR+YK VIQA+
Sbjct: 12 VVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIVLALLSVTISFRIYKGVIQAI 71
Query: 523 QKSEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHINKALKLIIRLFLVEDLVDSLKL 693
QKS+EGHPF+AYL+ ++ +S E Y N+A+ H+N +K + RLFLV+DLVDSLK+
Sbjct: 72 QKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKV 128
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 49,347,121
Number of extensions: 1085412
Number of successful extensions: 3446
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 3441
Number of HSP's successfully gapped: 10
Length of query: 536
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 428
Effective length of database: 15,274,216
Effective search space: 6537364448
Effective search space used: 6537364448
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012746
Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012746
(1609 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_872598.1| reticulon-3 [Bos taurus]. 376 e-104
Alignment gi|NP_001106692.1| reticulon-4 isoform 2 [Bos taurus]. 245 9e-65
Alignment gi|NP_001068606.1| reticulon-4 isoform 1 [Bos taurus]. 244 2e-64
Alignment gi|NP_001106731.1| reticulon-2 isoform B [Bos taurus]. 173 4e-43
Alignment gi|NP_872597.1| reticulon-2 isoform C [Bos taurus]. 172 8e-43
>ref|NP_872598.1| reticulon-3 [Bos taurus].
Length = 237
Score = 376 bits (965), Expect = e-104
Identities = 192/197 (97%), Positives = 197/197 (100%)
Frame = +1
Query: 319 KSCGSSCAVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRV 498
KSCGSSCAVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRV
Sbjct: 41 KSCGSSCAVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRV 100
Query: 499 YKSVIQAVQKSEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHINKALKLIIRLFLVEDLV 678
YKSVIQAVQKSEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHIN+ALKLIIRLFLVEDLV
Sbjct: 101 YKSVIQAVQKSEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHINRALKLIIRLFLVEDLV 160
Query: 679 DSLKLAVFMWLMTYVGAVFNGITLLILAELLIFSVPVVYEKYKTQIDHYVGIARDQTKSI 858
DSLKLAVFMWLMTYVGAVFNGITLLILAELL+FS+P+VYEKYKTQIDHYVGIARDQTKSI
Sbjct: 161 DSLKLAVFMWLMTYVGAVFNGITLLILAELLVFSIPIVYEKYKTQIDHYVGIARDQTKSI 220
Query: 859 VEKIQAKVPGIAKKKAE 909
VEKIQAK+PGIAKKKAE
Sbjct: 221 VEKIQAKLPGIAKKKAE 237
>ref|NP_001106692.1| reticulon-4 isoform 2 [Bos taurus].
Length = 379
Score = 245 bits (625), Expect = 9e-65
Identities = 116/193 (60%), Positives = 154/193 (79%)
Frame = +1
Query: 331 SSCAVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSV 510
S V DL++WRD+KKTG VFG +L +LLSL FS++SV +Y+ LALLSVTISFR+YK V
Sbjct: 188 SGSVVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGV 247
Query: 511 IQAVQKSEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHINKALKLIIRLFLVEDLVDSLK 690
IQA+QKS+EGHPF+AYL+ ++ +S E Y N+A+ H+N +K + RLFLV+DLVDSLK
Sbjct: 248 IQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLK 307
Query: 691 LAVFMWLMTYVGAVFNGITLLILAELLIFSVPVVYEKYKTQIDHYVGIARDQTKSIVEKI 870
AV MW+ TYVGA+FNG+TLLILA + +FSVPV+YE+++ QIDHY+G+A K + KI
Sbjct: 308 FAVLMWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMAKI 367
Query: 871 QAKVPGIAKKKAE 909
QAK+PG+ K+KAE
Sbjct: 368 QAKIPGL-KRKAE 379
>ref|NP_001068606.1| reticulon-4 isoform 1 [Bos taurus].
Length = 199
Score = 244 bits (622), Expect = 2e-64
Identities = 115/189 (60%), Positives = 153/189 (80%)
Frame = +1
Query: 343 VHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSVIQAV 522
V DL++WRD+KKTG VFG +L +LLSL FS++SV +Y+ LALLSVTISFR+YK VIQA+
Sbjct: 12 VVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQAI 71
Query: 523 QKSEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHINKALKLIIRLFLVEDLVDSLKLAVF 702
QKS+EGHPF+AYL+ ++ +S E Y N+A+ H+N +K + RLFLV+DLVDSLK AV
Sbjct: 72 QKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKFAVL 131
Query: 703 MWLMTYVGAVFNGITLLILAELLIFSVPVVYEKYKTQIDHYVGIARDQTKSIVEKIQAKV 882
MW+ TYVGA+FNG+TLLILA + +FSVPV+YE+++ QIDHY+G+A K + KIQAK+
Sbjct: 132 MWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMAKIQAKI 191
Query: 883 PGIAKKKAE 909
PG+ K+KAE
Sbjct: 192 PGL-KRKAE 199
>ref|NP_001106731.1| reticulon-2 isoform B [Bos taurus].
Length = 470
Score = 173 bits (438), Expect = 4e-43
Identities = 87/186 (46%), Positives = 125/186 (67%)
Frame = +1
Query: 331 SSCAVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSV 510
S V DL+ W+D K +G VF ++ LLSL FS++SV +++ L LL TIS RVY+ V
Sbjct: 266 SQVLVVDLLHWKDAKTSGVVFTCLMVSLLSLLHFSIVSVAAHVALLLLCGTISLRVYRKV 325
Query: 511 IQAVQKSEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHINKALKLIIRLFLVEDLVDSLK 690
+QAV + + +PF+AYLDVD+TL+ E + A + FLVEDLVDSLK
Sbjct: 326 LQAVHRGDGANPFQAYLDVDLTLTQEQTERLSQQIASRVVSAAIQLRHFFLVEDLVDSLK 385
Query: 691 LAVFMWLMTYVGAVFNGITLLILAELLIFSVPVVYEKYKTQIDHYVGIARDQTKSIVEKI 870
LA+ +++T+VGAVFNG+TLLIL + +F+VP++Y +++ QID YVG+ +Q I KI
Sbjct: 386 LALLFYILTFVGAVFNGLTLLILGVIGVFTVPLLYRQHQAQIDQYVGLVTNQLSHIKAKI 445
Query: 871 QAKVPG 888
+AK+PG
Sbjct: 446 RAKIPG 451
>ref|NP_872597.1| reticulon-2 isoform C [Bos taurus].
Length = 205
Score = 172 bits (436), Expect = 8e-43
Identities = 86/182 (47%), Positives = 124/182 (68%)
Frame = +1
Query: 343 VHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSVIQAV 522
V DL+ W+D K +G VF ++ LLSL FS++SV +++ L LL TIS RVY+ V+QAV
Sbjct: 5 VVDLLHWKDAKTSGVVFTCLMVSLLSLLHFSIVSVAAHVALLLLCGTISLRVYRKVLQAV 64
Query: 523 QKSEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHINKALKLIIRLFLVEDLVDSLKLAVF 702
+ + +PF+AYLDVD+TL+ E + A + FLVEDLVDSLKLA+
Sbjct: 65 HRGDGANPFQAYLDVDLTLTQEQTERLSQQIASRVVSAAIQLRHFFLVEDLVDSLKLALL 124
Query: 703 MWLMTYVGAVFNGITLLILAELLIFSVPVVYEKYKTQIDHYVGIARDQTKSIVEKIQAKV 882
+++T+VGAVFNG+TLLIL + +F+VP++Y +++ QID YVG+ +Q I KI+AK+
Sbjct: 125 FYILTFVGAVFNGLTLLILGVIGVFTVPLLYRQHQAQIDQYVGLVTNQLSHIKAKIRAKI 184
Query: 883 PG 888
PG
Sbjct: 185 PG 186
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 47,452,317
Number of extensions: 1110366
Number of successful extensions: 3232
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3229
Number of HSP's successfully gapped: 5
Length of query: 536
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 429
Effective length of database: 14,140,958
Effective search space: 6066470982
Effective search space used: 6066470982
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012746
(1609 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122650.1| PREDICTED: reticulon-3 isoform 1 [Sus scrofa]. 362 e-100
Alignment gi|XP_003353848.1| PREDICTED: reticulon-3 isoform 2 [Sus scrofa]. 315 5e-97
Alignment gi|NP_001123435.1| reticulon-4 [Sus scrofa]. 243 3e-64
Alignment gi|XP_003121890.2| PREDICTED: reticulon-1 isoform 1 [Sus scrofa]. 234 8e-62
Alignment gi|XP_003353544.1| PREDICTED: reticulon-1 isoform 2 [Sus scrofa]. 234 8e-62
Alignment gi|NP_001123432.1| reticulon-2 [Sus scrofa]. 167 2e-41
Alignment gi|XP_003125190.2| PREDICTED: reticulon-4-like [Sus scrofa]. 110 3e-24
>ref|XP_003122650.1| PREDICTED: reticulon-3 isoform 1 [Sus scrofa].
Length = 1016
Score = 362 bits (930), Expect = e-100
Identities = 189/190 (99%), Positives = 190/190 (100%)
Frame = +1
Query: 340 AVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSVIQA 519
+VHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSVIQA
Sbjct: 827 SVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSVIQA 886
Query: 520 VQKSEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHINKALKLIIRLFLVEDLVDSLKLAV 699
VQKSEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHINKALKLIIRLFLVEDLVDSLKLAV
Sbjct: 887 VQKSEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHINKALKLIIRLFLVEDLVDSLKLAV 946
Query: 700 FMWLMTYVGAVFNGITLLILAELLIFSVPVVYEKYKTQIDHYVGIARDQTKSIVEKIQAK 879
FMWLMTYVGAVFNGITLLILAELLIFSVPVVYEKYKTQIDHYVGIARDQTKSIVEKIQAK
Sbjct: 947 FMWLMTYVGAVFNGITLLILAELLIFSVPVVYEKYKTQIDHYVGIARDQTKSIVEKIQAK 1006
Query: 880 VPGIAKKKAE 909
VPGIAKKKAE
Sbjct: 1007 VPGIAKKKAE 1016
>ref|XP_003353848.1| PREDICTED: reticulon-3 isoform 2 [Sus scrofa].
Length = 241
Score = 315 bits (806), Expect(2) = 5e-97
Identities = 163/163 (100%), Positives = 163/163 (100%)
Frame = +1
Query: 319 KSCGSSCAVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRV 498
KSCGSSCAVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRV
Sbjct: 40 KSCGSSCAVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRV 99
Query: 499 YKSVIQAVQKSEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHINKALKLIIRLFLVEDLV 678
YKSVIQAVQKSEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHINKALKLIIRLFLVEDLV
Sbjct: 100 YKSVIQAVQKSEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHINKALKLIIRLFLVEDLV 159
Query: 679 DSLKLAVFMWLMTYVGAVFNGITLLILAELLIFSVPVVYEKYK 807
DSLKLAVFMWLMTYVGAVFNGITLLILAELLIFSVPVVYEKYK
Sbjct: 160 DSLKLAVFMWLMTYVGAVFNGITLLILAELLIFSVPVVYEKYK 202
Score = 59.3 bits (142), Expect(2) = 5e-97
Identities = 25/25 (100%), Positives = 25/25 (100%)
Frame = +3
Query: 864 KDPSKSPWNRKEKGRISTWTPEMQQ 938
KDPSKSPWNRKEKGRISTWTPEMQQ
Sbjct: 202 KDPSKSPWNRKEKGRISTWTPEMQQ 226
>ref|NP_001123435.1| reticulon-4 [Sus scrofa].
Length = 199
Score = 243 bits (619), Expect = 3e-64
Identities = 112/186 (60%), Positives = 150/186 (80%)
Frame = +1
Query: 343 VHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSVIQAV 522
V DL++WRD+KKTG VFG +L +LLSL FS++SV +Y+ LALLSVTISFR+YK VIQA+
Sbjct: 12 VVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQAI 71
Query: 523 QKSEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHINKALKLIIRLFLVEDLVDSLKLAVF 702
QKS+EGHPF+AYL+ ++ +S E Y N+A+ H+N +K + RLFLV+DLVDSLK AV
Sbjct: 72 QKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKFAVL 131
Query: 703 MWLMTYVGAVFNGITLLILAELLIFSVPVVYEKYKTQIDHYVGIARDQTKSIVEKIQAKV 882
MW+ TYVGA+FNG+TLLILA + +FSVPV+YE+++ QIDHY+G+A K + KIQAK+
Sbjct: 132 MWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMAKIQAKI 191
Query: 883 PGIAKK 900
PG+ +K
Sbjct: 192 PGLKRK 197
>ref|XP_003121890.2| PREDICTED: reticulon-1 isoform 1 [Sus scrofa].
Length = 770
Score = 234 bits (598), Expect = 8e-62
Identities = 112/187 (59%), Positives = 150/187 (80%)
Frame = +1
Query: 349 DLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSVIQAVQK 528
DL++WRD+K+TG VFG+ L++L SL FSV+SVV+YL LA LS TISFR+YKSV+QAVQK
Sbjct: 585 DLLYWRDIKQTGIVFGSFLLLLFSLTQFSVVSVVAYLALAALSATISFRIYKSVLQAVQK 644
Query: 529 SEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHINKALKLIIRLFLVEDLVDSLKLAVFMW 708
++EGHPFKAYL+++ITLS E Y + ++N LK + RLFLV+DLVDSLK AV MW
Sbjct: 645 TDEGHPFKAYLELEITLSQEQIQKYTDCLQFYVNSTLKELRRLFLVQDLVDSLKFAVLMW 704
Query: 709 LMTYVGAVFNGITLLILAELLIFSVPVVYEKYKTQIDHYVGIARDQTKSIVEKIQAKVPG 888
L+TYVGA+FNG+TLL++A + +F++PVVY K++ QID Y+G+ R ++V KIQAK+PG
Sbjct: 705 LLTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQIDQYLGLVRTHINAVVAKIQAKIPG 764
Query: 889 IAKKKAE 909
AK+ AE
Sbjct: 765 -AKRHAE 770
>ref|XP_003353544.1| PREDICTED: reticulon-1 isoform 2 [Sus scrofa].
Length = 208
Score = 234 bits (598), Expect = 8e-62
Identities = 112/187 (59%), Positives = 150/187 (80%)
Frame = +1
Query: 349 DLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSVIQAVQK 528
DL++WRD+K+TG VFG+ L++L SL FSV+SVV+YL LA LS TISFR+YKSV+QAVQK
Sbjct: 23 DLLYWRDIKQTGIVFGSFLLLLFSLTQFSVVSVVAYLALAALSATISFRIYKSVLQAVQK 82
Query: 529 SEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHINKALKLIIRLFLVEDLVDSLKLAVFMW 708
++EGHPFKAYL+++ITLS E Y + ++N LK + RLFLV+DLVDSLK AV MW
Sbjct: 83 TDEGHPFKAYLELEITLSQEQIQKYTDCLQFYVNSTLKELRRLFLVQDLVDSLKFAVLMW 142
Query: 709 LMTYVGAVFNGITLLILAELLIFSVPVVYEKYKTQIDHYVGIARDQTKSIVEKIQAKVPG 888
L+TYVGA+FNG+TLL++A + +F++PVVY K++ QID Y+G+ R ++V KIQAK+PG
Sbjct: 143 LLTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQIDQYLGLVRTHINAVVAKIQAKIPG 202
Query: 889 IAKKKAE 909
AK+ AE
Sbjct: 203 -AKRHAE 208
>ref|NP_001123432.1| reticulon-2 [Sus scrofa].
Length = 470
Score = 167 bits (423), Expect = 2e-41
Identities = 83/182 (45%), Positives = 122/182 (67%)
Frame = +1
Query: 343 VHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSVIQAV 522
V DL++W+D K +G VF ++ LLSL FS++SV +++ L LL TIS RVY+ V+ V
Sbjct: 270 VADLLYWKDTKTSGVVFTGLMVSLLSLLHFSIVSVAAHVALLLLCGTISLRVYRKVLHTV 329
Query: 523 QKSEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHINKALKLIIRLFLVEDLVDSLKLAVF 702
+ + +PF+AYLDVD+TL+ E + A + LVEDLVDSLKLA+
Sbjct: 330 HRGDGSNPFQAYLDVDLTLTREQTERLSQQIASRVVVAATQLRHFLLVEDLVDSLKLALL 389
Query: 703 MWLMTYVGAVFNGITLLILAELLIFSVPVVYEKYKTQIDHYVGIARDQTKSIVEKIQAKV 882
+++T+VGAVFNG+TLLIL + +F+VP++Y +++ QID YVG+ +Q I KI+AK+
Sbjct: 390 FYILTFVGAVFNGLTLLILGVIGLFTVPLLYRQHQAQIDQYVGLVTNQLSHIKAKIRAKI 449
Query: 883 PG 888
PG
Sbjct: 450 PG 451
>ref|XP_003125190.2| PREDICTED: reticulon-4-like [Sus scrofa].
Length = 1745
Score = 110 bits (274), Expect = 3e-24
Identities = 52/87 (59%), Positives = 68/87 (78%)
Frame = +1
Query: 331 SSCAVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSV 510
S +V DL++WRD+KKTG VFG +L +LLSL FS++SV +Y+ LALLSVTISFR+YK V
Sbjct: 1008 SKTSVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGV 1067
Query: 511 IQAVQKSEEGHPFKAYLDVDITLSSEA 591
IQA+QKS+EGHPF + V L++ A
Sbjct: 1068 IQAIQKSDEGHPFSLEISVSKQLAALA 1094
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,993,304
Number of extensions: 788868
Number of successful extensions: 2056
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2055
Number of HSP's successfully gapped: 8
Length of query: 536
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 432
Effective length of database: 8,754,644
Effective search space: 3782006208
Effective search space used: 3782006208
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012746
(1609 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_444306.1| reticulon-3 isoform 4 [Mus musculus]. 376 e-104
Alignment gi|NP_001003934.1| reticulon-3 isoform 1 [Mus musculus]. 359 4e-99
Alignment gi|NP_001003933.1| reticulon-3 isoform 2 [Mus musculus]. 359 4e-99
Alignment gi|NP_918941.1| reticulon-4 isoform B1 [Mus musculus]. 248 7e-66
Alignment gi|NP_918942.1| reticulon-4 isoform B2 [Mus musculus]. 247 2e-65
Alignment gi|NP_918943.1| reticulon-4 isoform A [Mus musculus]. 245 8e-65
Alignment gi|NP_918940.1| reticulon-4 isoform D [Mus musculus]. 245 8e-65
Alignment gi|NP_077188.1| reticulon-4 isoform C [Mus musculus]. 244 1e-64
Alignment gi|NP_001007597.1| reticulon-1 isoform RTN1-C [Mus musculus]. 235 8e-62
Alignment gi|NP_703187.2| reticulon-1 isoform RTN1-A [Mus musculus]. 235 8e-62
>ref|NP_444306.1| reticulon-3 isoform 4 [Mus musculus].
Length = 237
Score = 376 bits (965), Expect = e-104
Identities = 192/197 (97%), Positives = 197/197 (100%)
Frame = +1
Query: 319 KSCGSSCAVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRV 498
KSCGSSCAVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRV
Sbjct: 41 KSCGSSCAVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRV 100
Query: 499 YKSVIQAVQKSEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHINKALKLIIRLFLVEDLV 678
YKSVIQAVQKSEEGHPFKAYLDVDITLSSEAFHNY+NAAMVH+NKALKLIIRLFLVEDLV
Sbjct: 101 YKSVIQAVQKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHVNKALKLIIRLFLVEDLV 160
Query: 679 DSLKLAVFMWLMTYVGAVFNGITLLILAELLIFSVPVVYEKYKTQIDHYVGIARDQTKSI 858
DSLKLAVFMWLMTYVGAVFNGITLLILAELL+FSVP+VYEKYKTQIDHYVGIARDQTKSI
Sbjct: 161 DSLKLAVFMWLMTYVGAVFNGITLLILAELLVFSVPIVYEKYKTQIDHYVGIARDQTKSI 220
Query: 859 VEKIQAKVPGIAKKKAE 909
VEKIQAK+PGIAKKKAE
Sbjct: 221 VEKIQAKLPGIAKKKAE 237
>ref|NP_001003934.1| reticulon-3 isoform 1 [Mus musculus].
Length = 964
Score = 359 bits (921), Expect = 4e-99
Identities = 185/193 (95%), Positives = 190/193 (98%)
Frame = +1
Query: 331 SSCAVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSV 510
S VHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSV
Sbjct: 772 SDFPVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSV 831
Query: 511 IQAVQKSEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHINKALKLIIRLFLVEDLVDSLK 690
IQAVQKSEEGHPFKAYLDVDITLSSEAFHNY+NAAMVH+NKALKLIIRLFLVEDLVDSLK
Sbjct: 832 IQAVQKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHVNKALKLIIRLFLVEDLVDSLK 891
Query: 691 LAVFMWLMTYVGAVFNGITLLILAELLIFSVPVVYEKYKTQIDHYVGIARDQTKSIVEKI 870
LAVFMWLMTYVGAVFNGITLLILAELL+FSVP+VYEKYKTQIDHYVGIARDQTKSIVEKI
Sbjct: 892 LAVFMWLMTYVGAVFNGITLLILAELLVFSVPIVYEKYKTQIDHYVGIARDQTKSIVEKI 951
Query: 871 QAKVPGIAKKKAE 909
QAK+PGIAKKKAE
Sbjct: 952 QAKLPGIAKKKAE 964
>ref|NP_001003933.1| reticulon-3 isoform 2 [Mus musculus].
Length = 945
Score = 359 bits (921), Expect = 4e-99
Identities = 185/193 (95%), Positives = 190/193 (98%)
Frame = +1
Query: 331 SSCAVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSV 510
S VHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSV
Sbjct: 753 SDFPVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSV 812
Query: 511 IQAVQKSEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHINKALKLIIRLFLVEDLVDSLK 690
IQAVQKSEEGHPFKAYLDVDITLSSEAFHNY+NAAMVH+NKALKLIIRLFLVEDLVDSLK
Sbjct: 813 IQAVQKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHVNKALKLIIRLFLVEDLVDSLK 872
Query: 691 LAVFMWLMTYVGAVFNGITLLILAELLIFSVPVVYEKYKTQIDHYVGIARDQTKSIVEKI 870
LAVFMWLMTYVGAVFNGITLLILAELL+FSVP+VYEKYKTQIDHYVGIARDQTKSIVEKI
Sbjct: 873 LAVFMWLMTYVGAVFNGITLLILAELLVFSVPIVYEKYKTQIDHYVGIARDQTKSIVEKI 932
Query: 871 QAKVPGIAKKKAE 909
QAK+PGIAKKKAE
Sbjct: 933 QAKLPGIAKKKAE 945
>ref|NP_918941.1| reticulon-4 isoform B1 [Mus musculus].
Length = 356
Score = 248 bits (634), Expect = 7e-66
Identities = 117/197 (59%), Positives = 156/197 (79%)
Frame = +1
Query: 319 KSCGSSCAVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRV 498
K GS V DL++WRD+KKTG VFG +L +LLSL FS++SV +Y+ LALLSVTISFR+
Sbjct: 161 KRRGSGSVVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRI 220
Query: 499 YKSVIQAVQKSEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHINKALKLIIRLFLVEDLV 678
YK VIQA+QKS+EGHPF+AYL+ ++ +S E Y N+A+ H+N +K + RLFLV+DLV
Sbjct: 221 YKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLV 280
Query: 679 DSLKLAVFMWLMTYVGAVFNGITLLILAELLIFSVPVVYEKYKTQIDHYVGIARDQTKSI 858
DSLK AV MW+ TYVGA+FNG+TLLILA + +FS+PV+YE+++ QIDHY+G+A K
Sbjct: 281 DSLKFAVLMWVFTYVGALFNGLTLLILALISLFSIPVIYERHQAQIDHYLGLANKSVKDA 340
Query: 859 VEKIQAKVPGIAKKKAE 909
+ KIQAK+PG+ K+KAE
Sbjct: 341 MAKIQAKIPGL-KRKAE 356
>ref|NP_918942.1| reticulon-4 isoform B2 [Mus musculus].
Length = 375
Score = 247 bits (631), Expect = 2e-65
Identities = 116/192 (60%), Positives = 155/192 (80%)
Frame = +1
Query: 334 SCAVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSVI 513
S AV DL++WRD+KKTG VFG +L +LLSL FS++SV +Y+ LALLSVTISFR+YK VI
Sbjct: 185 SSAVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVI 244
Query: 514 QAVQKSEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHINKALKLIIRLFLVEDLVDSLKL 693
QA+QKS+EGHPF+AYL+ ++ +S E Y N+A+ H+N +K + RLFLV+DLVDSLK
Sbjct: 245 QAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLKF 304
Query: 694 AVFMWLMTYVGAVFNGITLLILAELLIFSVPVVYEKYKTQIDHYVGIARDQTKSIVEKIQ 873
AV MW+ TYVGA+FNG+TLLILA + +FS+PV+YE+++ QIDHY+G+A K + KIQ
Sbjct: 305 AVLMWVFTYVGALFNGLTLLILALISLFSIPVIYERHQAQIDHYLGLANKSVKDAMAKIQ 364
Query: 874 AKVPGIAKKKAE 909
AK+PG+ K+KAE
Sbjct: 365 AKIPGL-KRKAE 375
>ref|NP_918943.1| reticulon-4 isoform A [Mus musculus].
Length = 1162
Score = 245 bits (625), Expect = 8e-65
Identities = 114/190 (60%), Positives = 154/190 (81%)
Frame = +1
Query: 340 AVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSVIQA 519
+V DL++WRD+KKTG VFG +L +LLSL FS++SV +Y+ LALLSVTISFR+YK VIQA
Sbjct: 974 SVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQA 1033
Query: 520 VQKSEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHINKALKLIIRLFLVEDLVDSLKLAV 699
+QKS+EGHPF+AYL+ ++ +S E Y N+A+ H+N +K + RLFLV+DLVDSLK AV
Sbjct: 1034 IQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLKFAV 1093
Query: 700 FMWLMTYVGAVFNGITLLILAELLIFSVPVVYEKYKTQIDHYVGIARDQTKSIVEKIQAK 879
MW+ TYVGA+FNG+TLLILA + +FS+PV+YE+++ QIDHY+G+A K + KIQAK
Sbjct: 1094 LMWVFTYVGALFNGLTLLILALISLFSIPVIYERHQAQIDHYLGLANKSVKDAMAKIQAK 1153
Query: 880 VPGIAKKKAE 909
+PG+ K+KAE
Sbjct: 1154 IPGL-KRKAE 1162
>ref|NP_918940.1| reticulon-4 isoform D [Mus musculus].
Length = 1046
Score = 245 bits (625), Expect = 8e-65
Identities = 114/190 (60%), Positives = 154/190 (81%)
Frame = +1
Query: 340 AVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSVIQA 519
+V DL++WRD+KKTG VFG +L +LLSL FS++SV +Y+ LALLSVTISFR+YK VIQA
Sbjct: 858 SVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQA 917
Query: 520 VQKSEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHINKALKLIIRLFLVEDLVDSLKLAV 699
+QKS+EGHPF+AYL+ ++ +S E Y N+A+ H+N +K + RLFLV+DLVDSLK AV
Sbjct: 918 IQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLKFAV 977
Query: 700 FMWLMTYVGAVFNGITLLILAELLIFSVPVVYEKYKTQIDHYVGIARDQTKSIVEKIQAK 879
MW+ TYVGA+FNG+TLLILA + +FS+PV+YE+++ QIDHY+G+A K + KIQAK
Sbjct: 978 LMWVFTYVGALFNGLTLLILALISLFSIPVIYERHQAQIDHYLGLANKSVKDAMAKIQAK 1037
Query: 880 VPGIAKKKAE 909
+PG+ K+KAE
Sbjct: 1038 IPGL-KRKAE 1046
>ref|NP_077188.1| reticulon-4 isoform C [Mus musculus].
Length = 199
Score = 244 bits (624), Expect = 1e-64
Identities = 114/189 (60%), Positives = 153/189 (80%)
Frame = +1
Query: 343 VHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSVIQAV 522
V DL++WRD+KKTG VFG +L +LLSL FS++SV +Y+ LALLSVTISFR+YK VIQA+
Sbjct: 12 VVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQAI 71
Query: 523 QKSEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHINKALKLIIRLFLVEDLVDSLKLAVF 702
QKS+EGHPF+AYL+ ++ +S E Y N+A+ H+N +K + RLFLV+DLVDSLK AV
Sbjct: 72 QKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLKFAVL 131
Query: 703 MWLMTYVGAVFNGITLLILAELLIFSVPVVYEKYKTQIDHYVGIARDQTKSIVEKIQAKV 882
MW+ TYVGA+FNG+TLLILA + +FS+PV+YE+++ QIDHY+G+A K + KIQAK+
Sbjct: 132 MWVFTYVGALFNGLTLLILALISLFSIPVIYERHQAQIDHYLGLANKSVKDAMAKIQAKI 191
Query: 883 PGIAKKKAE 909
PG+ K+KAE
Sbjct: 192 PGL-KRKAE 199
>ref|NP_001007597.1| reticulon-1 isoform RTN1-C [Mus musculus].
Length = 208
Score = 235 bits (599), Expect = 8e-62
Identities = 111/187 (59%), Positives = 151/187 (80%)
Frame = +1
Query: 349 DLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSVIQAVQK 528
DL++WRD+K+TG VFG+ L++L SL FSV+SVV+YL LA LS TISFR+YKSV+QAVQK
Sbjct: 23 DLLYWRDIKQTGIVFGSFLLLLFSLTQFSVVSVVAYLALAALSATISFRIYKSVLQAVQK 82
Query: 529 SEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHINKALKLIIRLFLVEDLVDSLKLAVFMW 708
++EGHPFKAYL+++ITLS E Y + +++N LK + RLFLV+DLVDSLK AV MW
Sbjct: 83 TDEGHPFKAYLELEITLSQEQIQKYTDCLQLYVNSTLKELRRLFLVQDLVDSLKFAVLMW 142
Query: 709 LMTYVGAVFNGITLLILAELLIFSVPVVYEKYKTQIDHYVGIARDQTKSIVEKIQAKVPG 888
L+TYVGA+FNG+TLL++A + +F++PVVY K++ Q+D Y+G+ R ++V KIQAK+PG
Sbjct: 143 LLTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQVDQYLGLVRTHINTVVAKIQAKIPG 202
Query: 889 IAKKKAE 909
AK+ AE
Sbjct: 203 -AKRHAE 208
>ref|NP_703187.2| reticulon-1 isoform RTN1-A [Mus musculus].
Length = 780
Score = 235 bits (599), Expect = 8e-62
Identities = 111/187 (59%), Positives = 151/187 (80%)
Frame = +1
Query: 349 DLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSVIQAVQK 528
DL++WRD+K+TG VFG+ L++L SL FSV+SVV+YL LA LS TISFR+YKSV+QAVQK
Sbjct: 595 DLLYWRDIKQTGIVFGSFLLLLFSLTQFSVVSVVAYLALAALSATISFRIYKSVLQAVQK 654
Query: 529 SEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHINKALKLIIRLFLVEDLVDSLKLAVFMW 708
++EGHPFKAYL+++ITLS E Y + +++N LK + RLFLV+DLVDSLK AV MW
Sbjct: 655 TDEGHPFKAYLELEITLSQEQIQKYTDCLQLYVNSTLKELRRLFLVQDLVDSLKFAVLMW 714
Query: 709 LMTYVGAVFNGITLLILAELLIFSVPVVYEKYKTQIDHYVGIARDQTKSIVEKIQAKVPG 888
L+TYVGA+FNG+TLL++A + +F++PVVY K++ Q+D Y+G+ R ++V KIQAK+PG
Sbjct: 715 LLTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQVDQYLGLVRTHINTVVAKIQAKIPG 774
Query: 889 IAKKKAE 909
AK+ AE
Sbjct: 775 -AKRHAE 780
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,385,597
Number of extensions: 921461
Number of successful extensions: 2872
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 2869
Number of HSP's successfully gapped: 12
Length of query: 536
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 430
Effective length of database: 12,433,743
Effective search space: 5346509490
Effective search space used: 5346509490
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012746
(1609 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006045.1| reticulon-3 isoform a [Homo sapiens]. 373 e-103
Alignment gi|NP_958832.1| reticulon-3 isoform c [Homo sapiens]. 361 e-100
Alignment gi|NP_958831.1| reticulon-3 isoform b [Homo sapiens]. 358 8e-99
Alignment gi|NP_958833.1| reticulon-3 isoform d [Homo sapiens]. 309 3e-93
Alignment gi|NP_997403.1| reticulon-4 isoform D [Homo sapiens]. 246 3e-65
Alignment gi|NP_997404.1| reticulon-4 isoform E [Homo sapiens]. 245 7e-65
Alignment gi|NP_065393.1| reticulon-4 isoform A [Homo sapiens]. 245 7e-65
Alignment gi|NP_722550.1| reticulon-4 isoform B [Homo sapiens]. 245 1e-64
Alignment gi|NP_008939.1| reticulon-4 isoform C [Homo sapiens]. 244 2e-64
Alignment gi|NP_996734.1| reticulon-1 isoform C [Homo sapiens]. 234 1e-61
>ref|NP_006045.1| reticulon-3 isoform a [Homo sapiens].
Length = 236
Score = 373 bits (957), Expect = e-103
Identities = 191/197 (96%), Positives = 196/197 (99%)
Frame = +1
Query: 319 KSCGSSCAVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRV 498
KSC SSCAVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFR+
Sbjct: 40 KSCSSSCAVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRI 99
Query: 499 YKSVIQAVQKSEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHINKALKLIIRLFLVEDLV 678
YKSVIQAVQKSEEGHPFKAYLDVDITLSSEAFHNY+NAAMVHIN+ALKLIIRLFLVEDLV
Sbjct: 100 YKSVIQAVQKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLV 159
Query: 679 DSLKLAVFMWLMTYVGAVFNGITLLILAELLIFSVPVVYEKYKTQIDHYVGIARDQTKSI 858
DSLKLAVFMWLMTYVGAVFNGITLLILAELLIFSVP+VYEKYKTQIDHYVGIARDQTKSI
Sbjct: 160 DSLKLAVFMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSI 219
Query: 859 VEKIQAKVPGIAKKKAE 909
VEKIQAK+PGIAKKKAE
Sbjct: 220 VEKIQAKLPGIAKKKAE 236
>ref|NP_958832.1| reticulon-3 isoform c [Homo sapiens].
Length = 255
Score = 361 bits (927), Expect = e-100
Identities = 191/216 (88%), Positives = 196/216 (90%), Gaps = 19/216 (8%)
Frame = +1
Query: 319 KSCGSSCA-------------------VHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVI 441
KSC SSCA VHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVI
Sbjct: 40 KSCSSSCADSFVSSSSSQPVSLFSTSQVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVI 99
Query: 442 SVVSYLILALLSVTISFRVYKSVIQAVQKSEEGHPFKAYLDVDITLSSEAFHNYVNAAMV 621
SVVSYLILALLSVTISFR+YKSVIQAVQKSEEGHPFKAYLDVDITLSSEAFHNY+NAAMV
Sbjct: 100 SVVSYLILALLSVTISFRIYKSVIQAVQKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMV 159
Query: 622 HINKALKLIIRLFLVEDLVDSLKLAVFMWLMTYVGAVFNGITLLILAELLIFSVPVVYEK 801
HIN+ALKLIIRLFLVEDLVDSLKLAVFMWLMTYVGAVFNGITLLILAELLIFSVP+VYEK
Sbjct: 160 HINRALKLIIRLFLVEDLVDSLKLAVFMWLMTYVGAVFNGITLLILAELLIFSVPIVYEK 219
Query: 802 YKTQIDHYVGIARDQTKSIVEKIQAKVPGIAKKKAE 909
YKTQIDHYVGIARDQTKSIVEKIQAK+PGIAKKKAE
Sbjct: 220 YKTQIDHYVGIARDQTKSIVEKIQAKLPGIAKKKAE 255
>ref|NP_958831.1| reticulon-3 isoform b [Homo sapiens].
Length = 1013
Score = 358 bits (919), Expect = 8e-99
Identities = 184/190 (96%), Positives = 190/190 (100%)
Frame = +1
Query: 340 AVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSVIQA 519
+VHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFR+YKSVIQA
Sbjct: 824 SVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSVIQA 883
Query: 520 VQKSEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHINKALKLIIRLFLVEDLVDSLKLAV 699
VQKSEEGHPFKAYLDVDITLSSEAFHNY+NAAMVHIN+ALKLIIRLFLVEDLVDSLKLAV
Sbjct: 884 VQKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLKLAV 943
Query: 700 FMWLMTYVGAVFNGITLLILAELLIFSVPVVYEKYKTQIDHYVGIARDQTKSIVEKIQAK 879
FMWLMTYVGAVFNGITLLILAELLIFSVP+VYEKYKTQIDHYVGIARDQTKSIVEKIQAK
Sbjct: 944 FMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSIVEKIQAK 1003
Query: 880 VPGIAKKKAE 909
+PGIAKKKAE
Sbjct: 1004 LPGIAKKKAE 1013
>ref|NP_958833.1| reticulon-3 isoform d [Homo sapiens].
Length = 241
Score = 309 bits (792), Expect(2) = 3e-93
Identities = 158/163 (96%), Positives = 162/163 (99%)
Frame = +1
Query: 319 KSCGSSCAVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRV 498
KSC SSCAVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFR+
Sbjct: 40 KSCSSSCAVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRI 99
Query: 499 YKSVIQAVQKSEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHINKALKLIIRLFLVEDLV 678
YKSVIQAVQKSEEGHPFKAYLDVDITLSSEAFHNY+NAAMVHIN+ALKLIIRLFLVEDLV
Sbjct: 100 YKSVIQAVQKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLV 159
Query: 679 DSLKLAVFMWLMTYVGAVFNGITLLILAELLIFSVPVVYEKYK 807
DSLKLAVFMWLMTYVGAVFNGITLLILAELLIFSVP+VYEKYK
Sbjct: 160 DSLKLAVFMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYK 202
Score = 52.8 bits (125), Expect(2) = 3e-93
Identities = 21/25 (84%), Positives = 24/25 (96%)
Frame = +3
Query: 864 KDPSKSPWNRKEKGRISTWTPEMQQ 938
KDPSK+PWNR++KGRISTW PEMQQ
Sbjct: 202 KDPSKTPWNRQKKGRISTWKPEMQQ 226
>ref|NP_997403.1| reticulon-4 isoform D [Homo sapiens].
Length = 392
Score = 246 bits (629), Expect = 3e-65
Identities = 117/192 (60%), Positives = 155/192 (80%)
Frame = +1
Query: 334 SCAVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSVI 513
S AV DL++WRD+KKTG VFG +L +LLSL FS++SV +Y+ LALLSVTISFR+YK VI
Sbjct: 202 SSAVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVI 261
Query: 514 QAVQKSEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHINKALKLIIRLFLVEDLVDSLKL 693
QA+QKS+EGHPF+AYL+ ++ +S E Y N+A+ H+N +K + RLFLV+DLVDSLK
Sbjct: 262 QAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKF 321
Query: 694 AVFMWLMTYVGAVFNGITLLILAELLIFSVPVVYEKYKTQIDHYVGIARDQTKSIVEKIQ 873
AV MW+ TYVGA+FNG+TLLILA + +FSVPV+YE+++ QIDHY+G+A K + KIQ
Sbjct: 322 AVLMWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMAKIQ 381
Query: 874 AKVPGIAKKKAE 909
AK+PG+ K+KAE
Sbjct: 382 AKIPGL-KRKAE 392
>ref|NP_997404.1| reticulon-4 isoform E [Homo sapiens].
Length = 986
Score = 245 bits (626), Expect = 7e-65
Identities = 116/193 (60%), Positives = 155/193 (80%)
Frame = +1
Query: 331 SSCAVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSV 510
S +V DL++WRD+KKTG VFG +L +LLSL FS++SV +Y+ LALLSVTISFR+YK V
Sbjct: 795 SKTSVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGV 854
Query: 511 IQAVQKSEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHINKALKLIIRLFLVEDLVDSLK 690
IQA+QKS+EGHPF+AYL+ ++ +S E Y N+A+ H+N +K + RLFLV+DLVDSLK
Sbjct: 855 IQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLK 914
Query: 691 LAVFMWLMTYVGAVFNGITLLILAELLIFSVPVVYEKYKTQIDHYVGIARDQTKSIVEKI 870
AV MW+ TYVGA+FNG+TLLILA + +FSVPV+YE+++ QIDHY+G+A K + KI
Sbjct: 915 FAVLMWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMAKI 974
Query: 871 QAKVPGIAKKKAE 909
QAK+PG+ K+KAE
Sbjct: 975 QAKIPGL-KRKAE 986
>ref|NP_065393.1| reticulon-4 isoform A [Homo sapiens].
Length = 1192
Score = 245 bits (626), Expect = 7e-65
Identities = 116/193 (60%), Positives = 155/193 (80%)
Frame = +1
Query: 331 SSCAVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSV 510
S +V DL++WRD+KKTG VFG +L +LLSL FS++SV +Y+ LALLSVTISFR+YK V
Sbjct: 1001 SKTSVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGV 1060
Query: 511 IQAVQKSEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHINKALKLIIRLFLVEDLVDSLK 690
IQA+QKS+EGHPF+AYL+ ++ +S E Y N+A+ H+N +K + RLFLV+DLVDSLK
Sbjct: 1061 IQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLK 1120
Query: 691 LAVFMWLMTYVGAVFNGITLLILAELLIFSVPVVYEKYKTQIDHYVGIARDQTKSIVEKI 870
AV MW+ TYVGA+FNG+TLLILA + +FSVPV+YE+++ QIDHY+G+A K + KI
Sbjct: 1121 FAVLMWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMAKI 1180
Query: 871 QAKVPGIAKKKAE 909
QAK+PG+ K+KAE
Sbjct: 1181 QAKIPGL-KRKAE 1192
>ref|NP_722550.1| reticulon-4 isoform B [Homo sapiens].
Length = 373
Score = 245 bits (625), Expect = 1e-64
Identities = 116/193 (60%), Positives = 154/193 (79%)
Frame = +1
Query: 331 SSCAVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSV 510
S V DL++WRD+KKTG VFG +L +LLSL FS++SV +Y+ LALLSVTISFR+YK V
Sbjct: 182 SGSVVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGV 241
Query: 511 IQAVQKSEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHINKALKLIIRLFLVEDLVDSLK 690
IQA+QKS+EGHPF+AYL+ ++ +S E Y N+A+ H+N +K + RLFLV+DLVDSLK
Sbjct: 242 IQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLK 301
Query: 691 LAVFMWLMTYVGAVFNGITLLILAELLIFSVPVVYEKYKTQIDHYVGIARDQTKSIVEKI 870
AV MW+ TYVGA+FNG+TLLILA + +FSVPV+YE+++ QIDHY+G+A K + KI
Sbjct: 302 FAVLMWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMAKI 361
Query: 871 QAKVPGIAKKKAE 909
QAK+PG+ K+KAE
Sbjct: 362 QAKIPGL-KRKAE 373
>ref|NP_008939.1| reticulon-4 isoform C [Homo sapiens].
Length = 199
Score = 244 bits (622), Expect = 2e-64
Identities = 115/189 (60%), Positives = 153/189 (80%)
Frame = +1
Query: 343 VHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSVIQAV 522
V DL++WRD+KKTG VFG +L +LLSL FS++SV +Y+ LALLSVTISFR+YK VIQA+
Sbjct: 12 VVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQAI 71
Query: 523 QKSEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHINKALKLIIRLFLVEDLVDSLKLAVF 702
QKS+EGHPF+AYL+ ++ +S E Y N+A+ H+N +K + RLFLV+DLVDSLK AV
Sbjct: 72 QKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKFAVL 131
Query: 703 MWLMTYVGAVFNGITLLILAELLIFSVPVVYEKYKTQIDHYVGIARDQTKSIVEKIQAKV 882
MW+ TYVGA+FNG+TLLILA + +FSVPV+YE+++ QIDHY+G+A K + KIQAK+
Sbjct: 132 MWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMAKIQAKI 191
Query: 883 PGIAKKKAE 909
PG+ K+KAE
Sbjct: 192 PGL-KRKAE 199
>ref|NP_996734.1| reticulon-1 isoform C [Homo sapiens].
Length = 208
Score = 234 bits (598), Expect = 1e-61
Identities = 112/187 (59%), Positives = 150/187 (80%)
Frame = +1
Query: 349 DLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRVYKSVIQAVQK 528
DL++WRD+K+TG VFG+ L++L SL FSV+SVV+YL LA LS TISFR+YKSV+QAVQK
Sbjct: 23 DLLYWRDIKQTGIVFGSFLLLLFSLTQFSVVSVVAYLALAALSATISFRIYKSVLQAVQK 82
Query: 529 SEEGHPFKAYLDVDITLSSEAFHNYVNAAMVHINKALKLIIRLFLVEDLVDSLKLAVFMW 708
++EGHPFKAYL+++ITLS E Y + ++N LK + RLFLV+DLVDSLK AV MW
Sbjct: 83 TDEGHPFKAYLELEITLSQEQIQKYTDCLQFYVNSTLKELRRLFLVQDLVDSLKFAVLMW 142
Query: 709 LMTYVGAVFNGITLLILAELLIFSVPVVYEKYKTQIDHYVGIARDQTKSIVEKIQAKVPG 888
L+TYVGA+FNG+TLL++A + +F++PVVY K++ QID Y+G+ R ++V KIQAK+PG
Sbjct: 143 LLTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQIDQYLGLVRTHINAVVAKIQAKIPG 202
Query: 889 IAKKKAE 909
AK+ AE
Sbjct: 203 -AKRHAE 208
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 48,452,314
Number of extensions: 1073705
Number of successful extensions: 3397
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 3389
Number of HSP's successfully gapped: 15
Length of query: 536
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 429
Effective length of database: 14,770,016
Effective search space: 6336336864
Effective search space used: 6336336864
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012746
(1609 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 999 0.0
Sscrofa_Chr05 62 1e-06
>Sscrofa_Chr02
|| Length = 162569375
Score = 999 bits (504), Expect = 0.0
Identities = 544/564 (96%)
Strand = Plus / Minus
Query: 867 gatccaagcaaaagtccctggaatcgcaaagaaaaaggcagaataagtacatggacaccg 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7561011 gatccaagcaaaagtccctggaatcgcaaagaaaaaggcagaataagtacatggacaccg 7560952
Query: 927 gagatgcaacagttactaaaacaccatttaatagttataatgttgttacttgtactatga 986
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7560951 gagatgcaacagttactaaaacaccatttaatagttataatgttgttacttgtactatga 7560892
Query: 987 aggaacgtgctcagtgtcagcttgagcctgcattccaagcnnnnnnnnnnnnnaatttgg 1046
|||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 7560891 aggaacgtgctcagtgtcagcttgagcctgcattccaagctttttttttttttaatttgg 7560832
Query: 1047 tgttttctccccacctttccctttatcctcagtatcaagcacaagaatgattggactnnn 1106
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7560831 tgttttctccccacctttccctttatcctcagtatcaagcacaagaatgattggactaaa 7560772
Query: 1107 nnnngaactgatatcttagaacccgaaagaataaagaaaggatcaaattaataggataaa 1166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7560771 aaaagaactgatatcttagaacccgaaagaataaagaaaggatcaaattaataggataaa 7560712
Query: 1167 tcagtaccttaagggtggtggagcttttacctatagcttgaaaggaggggaaagattgga 1226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7560711 tcagtaccttaagggtggtggagcttttacctatagcttgaaaggaggggaaagattgga 7560652
Query: 1227 agtaaggagaaaatgaaaaatgaacacatctcttggattcttctatccaagtttcaagga 1286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7560651 agtaaggagaaaatgaaaaatgaacacatctcttggattcttctatccaagtttcaagga 7560592
Query: 1287 atagttttacacagcttcccatcatagttttgcccttatttttaagttaagaaataatga 1346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7560591 atagttttacacagcttcccatcatagttttgcccttatttttaagttaagaaataatga 7560532
Query: 1347 ttaatttatgaagaaattatctgggacaaaagtgggattccttcccttggttttttgtgt 1406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7560531 ttaatttatgaagaaattatctgggacaaaagtgggattccttcccttggttttttgtgt 7560472
Query: 1407 ttcggggggttttgtttcagtgtt 1430
||||||||||||||||||||||||
Sbjct: 7560471 ttcggggggttttgtttcagtgtt 7560448
Score = 414 bits (209), Expect = e-113
Identities = 209/209 (100%)
Strand = Plus / Minus
Query: 343 gtgcacgacttgattttctggcgagatgtgaagaagactgggtttgtctttggcaccaca 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7567740 gtgcacgacttgattttctggcgagatgtgaagaagactgggtttgtctttggcaccaca 7567681
Query: 403 ctgatcatgctgctttccctggcagctttcagtgtcatcagtgtggtttcttacctcatc 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7567680 ctgatcatgctgctttccctggcagctttcagtgtcatcagtgtggtttcttacctcatc 7567621
Query: 463 cttgctcttctgtctgtcaccatcagcttcagagtctacaagtctgtcatccaagctgta 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7567620 cttgctcttctgtctgtcaccatcagcttcagagtctacaagtctgtcatccaagctgta 7567561
Query: 523 cagaagtcagaagaaggccatccattcaa 551
|||||||||||||||||||||||||||||
Sbjct: 7567560 cagaagtcagaagaaggccatccattcaa 7567532
Score = 297 bits (150), Expect = 1e-77
Identities = 150/150 (100%)
Strand = Plus / Minus
Query: 194 gcgcagccatggcggagctgtcggcggccactcagtccccgtccgtctcgtcgtcctccg 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7713833 gcgcagccatggcggagctgtcggcggccactcagtccccgtccgtctcgtcgtcctccg 7713774
Query: 254 gggccgagtcctctgcgcccggtggcggcggtgggagcccgggagcctgccccgccctgg 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7713773 gggccgagtcctctgcgcccggtggcggcggtgggagcccgggagcctgccccgccctgg 7713714
Query: 314 gggcgaagagctgcggctcctcctgtgcgg 343
||||||||||||||||||||||||||||||
Sbjct: 7713713 gggcgaagagctgcggctcctcctgtgcgg 7713684
Score = 276 bits (139), Expect = 4e-71
Identities = 139/139 (100%)
Strand = Plus / Minus
Query: 552 agcctacctggatgtagacatcactctgtcctcagaagctttccataattatgtgaatgc 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7565698 agcctacctggatgtagacatcactctgtcctcagaagctttccataattatgtgaatgc 7565639
Query: 612 tgccatggtgcacatcaacaaggccctgaaactcatcattcgtctcttcctggtggaaga 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7565638 tgccatggtgcacatcaacaaggccctgaaactcatcattcgtctcttcctggtggaaga 7565579
Query: 672 tctagttgactccttgaag 690
|||||||||||||||||||
Sbjct: 7565578 tctagttgactccttgaag 7565560
Score = 250 bits (126), Expect = 2e-63
Identities = 129/130 (99%)
Strand = Plus / Minus
Query: 4 tttgtgcgcctgcgcgctcgcgctcccgccctctcgcggcgctgggcttagtcagtgagt 63
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 7714023 tttgtgcgcctgcgcgctcgcgctcccgccctctcgcggcgctgggcttagtcagtcagt 7713964
Query: 64 ctgtcggagtctgtcctcggagcaggaggggcgaagcgacttcggagagctagctgccgg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7713963 ctgtcggagtctgtcctcggagcaggaggggcgaagcgacttcggagagctagctgccgg 7713904
Query: 124 actcgattat 133
||||||||||
Sbjct: 7713903 actcgattat 7713894
Score = 228 bits (115), Expect = 7e-57
Identities = 115/115 (100%)
Strand = Plus / Minus
Query: 1495 cagtcctctgatcccatctttctgccccacaatgtgagcagctactcctaatattcttca 1554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7560383 cagtcctctgatcccatctttctgccccacaatgtgagcagctactcctaatattcttca 7560324
Query: 1555 tttggtgagataactttcaactctatgaataacttagaggtgatagtgataattc 1609
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7560323 tttggtgagataactttcaactctatgaataacttagaggtgatagtgataattc 7560269
Score = 143 bits (72), Expect = 3e-31
Identities = 72/72 (100%)
Strand = Plus / Minus
Query: 689 agctggctgtcttcatgtggctgatgacctatgttggtgccgttttcaatgggatcaccc 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7564845 agctggctgtcttcatgtggctgatgacctatgttggtgccgttttcaatgggatcaccc 7564786
Query: 749 ttctgattcttg 760
||||||||||||
Sbjct: 7564785 ttctgattcttg 7564774
Score = 125 bits (63), Expect = 8e-26
Identities = 63/63 (100%)
Strand = Plus / Minus
Query: 805 aagacccagattgatcactatgttggcatcgctcgggatcagaccaagtccattgttgaa 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7563039 aagacccagattgatcactatgttggcatcgctcgggatcagaccaagtccattgttgaa 7562980
Query: 865 aag 867
|||
Sbjct: 7562979 aag 7562977
Score = 95.6 bits (48), Expect = 7e-17
Identities = 48/48 (100%)
Strand = Plus / Minus
Query: 760 gccgaactgctcattttcagtgttccagtcgtctatgagaagtacaag 807
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7564036 gccgaactgctcattttcagtgttccagtcgtctatgagaagtacaag 7563989
>Sscrofa_Chr05
|| Length = 111506441
Score = 61.9 bits (31), Expect = 1e-06
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 459 catccttgctcttctgtctgtcaccatcagcttcagagtctacaagtctgtcatccaagc 518
|||||| ||||| || | ||||||||||| |||||| |||||||||| ||||||||||||
Sbjct: 85903205 catcctggctctcctctttgtcaccatcaacttcag-gtctacaagtatgtcatccaagc 85903263
Query: 519 tgt 521
|||
Sbjct: 85903264 tgt 85903266
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 45,307,748
Number of extensions: 357
Number of successful extensions: 357
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 356
Number of HSP's successfully gapped: 11
Length of query: 1609
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1587
Effective length of database: 2,808,408,574
Effective search space: 4456944406938
Effective search space used: 4456944406938
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)