Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012752
(1015 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776977.1| interferon alpha/beta receptor 1 precursor [Bos... 385 e-107
Alignment gi|NP_001070443.1| interleukin-10 receptor subunit beta [Bos ta... 90 4e-18
Alignment gi|NP_001193271.1| interleukin-20 receptor subunit alpha [Bos t... 78 1e-14
Alignment gi|XP_002684633.1| PREDICTED: interferon gamma receptor 2 (inte... 63 5e-10
Alignment gi|XP_592804.3| PREDICTED: interferon gamma receptor 2 (interfe... 63 5e-10
Alignment gi|XP_002690307.1| PREDICTED: interleukin 22-binding protein-li... 50 2e-06
Alignment gi|XP_612334.4| PREDICTED: interleukin 22-binding protein [Bos ... 50 2e-06
>ref|NP_776977.1| interferon alpha/beta receptor 1 precursor [Bos taurus].
Length = 560
Score = 385 bits (989), Expect = e-107
Identities = 188/270 (69%), Positives = 221/270 (81%), Gaps = 2/270 (0%)
Frame = +3
Query: 174 MLGFLGATTLMLVAGAPWVLPA--GGADLRSPENVVVSIIDDNFILKWKXXXXXXXXXXX 347
ML LGATTLMLVAG WVLPA G A+L+ PENV + IIDDNF LKW
Sbjct: 1 MLALLGATTLMLVAGR-WVLPAASGEANLK-PENVEIHIIDDNFFLKWNSSSESVKNVTF 58
Query: 348 XADYQITGMDNWIKLPGCQYVTSTECNFSSIKLKSVYEKIKLRIRAETGNSTSPWYEVEP 527
ADYQI G DNW KL GCQ++TST+CNFSS++L++V+EKI+LRIRAE GN+TS WYEVEP
Sbjct: 59 SADYQILGTDNWKKLSGCQHITSTKCNFSSVELENVFEKIELRIRAEEGNNTSTWYEVEP 118
Query: 528 FIPFQEAQIGPPDVHLEAEDKAIIINLSPPGTKNSVMWAMDSSSFVYSLVIWKNSSSLEE 707
F+PF EAQIGPPDVHLEAEDKAII+++SPPGTK+S+MWAMD SSF YS+VIWKNSSSLEE
Sbjct: 119 FVPFLEAQIGPPDVHLEAEDKAIILSISPPGTKDSIMWAMDRSSFRYSVVIWKNSSSLEE 178
Query: 708 RTKTVYARDKIHQLSPETTYCLKVKAGLRSPRKVGVYSPVYCINTTVKHPLPFPENLEIN 887
RT+TVY DKI++LSPE TYCLKVKA LR +VG YSPVYCINTT +H +P PEN++IN
Sbjct: 179 RTETVYPEDKIYKLSPEITYCLKVKAELRLQSRVGCYSPVYCINTTERHKVPSPENIQIN 238
Query: 888 AENRVYVS*WNYNYENVTFQAQWLHAFFKR 977
A+N++YV W+Y YEN TFQAQWL AFFK+
Sbjct: 239 ADNQIYVLKWDYPYENATFQAQWLRAFFKK 268
Score = 70.5 bits (171), Expect = 2e-12
Identities = 48/190 (25%), Positives = 88/190 (46%), Gaps = 7/190 (3%)
Frame = +3
Query: 258 SPENVVVSIIDDNFILKWKXXXXXXXXXXXXADY---QITG--MDNWIKLPGCQYVTSTE 422
SPEN+ ++ + ++LKW +I G D W ++P C+ VTST
Sbjct: 231 SPENIQINADNQIYVLKWDYPYENATFQAQWLRAFFKKIPGNHSDKWKQIPNCENVTSTH 290
Query: 423 CNFS-SIKLKSVYEKIKLRIRAETGNSTSPWYEVEPFIPFQEAQIGPPDVHLEA-EDKAI 596
C F + + +Y +R+RA GN TS W E + F + I PP + +++ D ++
Sbjct: 291 CVFPREVSSRGIYY---VRVRASNGNGTSFWSEEKEFNTEMKTIIFPPVISVKSVTDDSL 347
Query: 597 IINLSPPGTKNSVMWAMDSSSFVYSLVIWKNSSSLEERTKTVYARDKIHQLSPETTYCLK 776
+++ ++ M +Y ++ W+N+S+ E + L P T YC+K
Sbjct: 348 HVSVGA-SEESENMSVNQLYPLIYEVIFWENTSNAERKVLEKRTNFIFPDLKPLTVYCVK 406
Query: 777 VKAGLRSPRK 806
+A + + R+
Sbjct: 407 ARALIENDRR 416
>ref|NP_001070443.1| interleukin-10 receptor subunit beta [Bos taurus].
Length = 317
Score = 89.7 bits (221), Expect = 4e-18
Identities = 67/236 (28%), Positives = 106/236 (44%), Gaps = 4/236 (1%)
Frame = +3
Query: 168 RTMLGFLGATTLMLVAGAPWVLPAGGADLRSPENVVVSIIDDNFILKWKXXXXXXXXXXX 347
R++L +LG LM G + PENV ++ ++ IL+W+
Sbjct: 3 RSLLSWLGGCLLMSALGM----------VPPPENVRMNSVNFKNILRWESPAFPKGNLTF 52
Query: 348 XADYQITGMDNWIKLPG-CQYVTSTECNFSSIKLKSVYEKIKLRIRAETGNSTSPWYEVE 524
A YQ ++ K C + TEC+FSS+ S Y LR+RAE + +S W +
Sbjct: 53 TAQYQ-----SYRKFQDTCTSILLTECDFSSL---SKYGDHTLRVRAEFADESSEWINIT 104
Query: 525 PFIPFQEAQIGPPDVHLEAEDKAIIINLSPPGTKNSVM-WAMDS--SSFVYSLVIWKNSS 695
F P + IGPP + +EA ++ + P +N W M + +S+ Y + WKN S
Sbjct: 105 -FCPVDDTTIGPPRMQVEALANSLHVRFFAPRIENEPEPWTMRNIYNSWTYHVRYWKNGS 163
Query: 696 SLEERTKTVYARDKIHQLSPETTYCLKVKAGLRSPRKVGVYSPVYCINTTVKHPLP 863
+ Y + + L +TTYC++V+ L K G +S C TT+ P
Sbjct: 164 DEKFSISGQYDFEFLRNLESQTTYCVQVRGFLSDRNKAGEWSEPVCEQTTIDETTP 219
>ref|NP_001193271.1| interleukin-20 receptor subunit alpha [Bos taurus].
Length = 558
Score = 77.8 bits (190), Expect = 1e-14
Identities = 59/228 (25%), Positives = 97/228 (42%), Gaps = 9/228 (3%)
Frame = +3
Query: 186 LGATTLMLVAGAPW--VLPAGGADLRSPENVVVSIIDDNFILKWKXXXXXXXXXXXXA-D 356
L A +L+ AP +P DL P NV I+ IL+W
Sbjct: 20 LPALLFLLLVAAPTGRAVPCASGDLPKPTNVAFISINMKNILQWNPPEGLQGMEVSYTVQ 79
Query: 357 YQITGMDNWIKLPGCQYVTSTECNFSSIKLKSVYEKIKLRIRAETGNSTSPWYEVEPFIP 536
Y I G W+ C+ ++ T C+ S+ + + +++A G + S W E F P
Sbjct: 80 YFIYGQKKWLNKSECRNISRTYCDLSA-ETSDYEHQYYAKVKAMWGTNCSKWAETGRFYP 138
Query: 537 FQEAQIGPPDVHLEAEDKAIIINLSPP------GTKNSVMWAMDSSSFVYSLVIWKNSSS 698
F E QIGPP+V L ++K+I I L+ P ++S+ S+ Y++ I+ S+
Sbjct: 139 FLETQIGPPEVALTTDEKSISIVLTAPKKWKKNPEESSISMQQIYSNLKYNVSIYNTKSN 198
Query: 699 LEERTKTVYARDKIHQLSPETTYCLKVKAGLRSPRKVGVYSPVYCINT 842
L P T YC+ V++ + P ++ S C++T
Sbjct: 199 RTWSQCVTNHTLVFSWLEPGTLYCVLVESFVPGPPRLTHPSERQCVST 246
>ref|XP_002684633.1| PREDICTED: interferon gamma receptor 2 (interferon gamma transducer
1) [Bos taurus].
Length = 608
Score = 62.8 bits (151), Expect = 5e-10
Identities = 78/312 (25%), Positives = 118/312 (37%), Gaps = 50/312 (16%)
Frame = +3
Query: 6 SVGRGDCGGAGHERREGTGPHGSQVRGW--------PVHPS---------FPCAALPDVA 134
S G G GAGH G GP + RG P+ P+ PC
Sbjct: 150 SPGGGRGAGAGHAPG-GPGPGAAAARGARPPQDALPPLQPAGLGKRRAPRAPCGRHGRRG 208
Query: 135 EDVIGSAGGR--------PRTMLG------------FLGATTLMLVAGAPWVLPAGG-AD 251
+V GSA R PR++ L LML PA A
Sbjct: 209 GEVSGSATPRRGRAAPPAPRSVRRPEPWAMRPPPPTLLPPLLLMLSGFGAAAPPADSLAQ 268
Query: 252 LRSPENVVVSIIDDNFILKWKXXXXXXXXXXXX--ADYQITGMDNWIKLP------GCQY 407
L +P N+ V + + L W+ Y+ + NW + C
Sbjct: 269 LPAPGNLKVHLYNAQQALSWEPVSLDSDPRPVVYQVQYKYSTSSNWYDVNKEDSKVDCTN 328
Query: 408 VTSTECNFSSIKLKSVYEK---IKLRIRAETGNSTSPWYEVEPFIPFQEAQIGPPD-VHL 575
+T TEC+F++ L + + I LR+RA+ G S W F ++ A IGPP+ + +
Sbjct: 329 LTRTECDFTANSLSEGFPRRFNISLRVRAKLGGLVSAWATAPWFEHYRNATIGPPENIRV 388
Query: 576 EAEDKAIIINLSPPGTKNSVMWAMDSSSFVYSLVIWKNSSSLEERTKTVYARDKIHQLSP 755
E+ ++II LS P + + FVY + W+ + + + ++ L P
Sbjct: 389 TPEEGSLIIRLSAPFDVPAT-----EAYFVYCVYYWEKAGAKQVTRPFRSNFITLNDLKP 443
Query: 756 ETTYCLKVKAGL 791
YC +VKA L
Sbjct: 444 LRVYCFQVKAEL 455
>ref|XP_592804.3| PREDICTED: interferon gamma receptor 2 (interferon gamma transducer
1) [Bos taurus].
Length = 608
Score = 62.8 bits (151), Expect = 5e-10
Identities = 78/312 (25%), Positives = 118/312 (37%), Gaps = 50/312 (16%)
Frame = +3
Query: 6 SVGRGDCGGAGHERREGTGPHGSQVRGW--------PVHPS---------FPCAALPDVA 134
S G G GAGH G GP + RG P+ P+ PC
Sbjct: 150 SPGGGRGAGAGHAPG-GPGPGAAAARGARPPQDALPPLQPAGLGKRRAPRAPCGRHGRRG 208
Query: 135 EDVIGSAGGR--------PRTMLG------------FLGATTLMLVAGAPWVLPAGG-AD 251
+V GSA R PR++ L LML PA A
Sbjct: 209 GEVSGSATPRRGRAAPPAPRSVRRPEPWAMRPPPPTLLPPLLLMLSGFGAAAPPADSLAQ 268
Query: 252 LRSPENVVVSIIDDNFILKWKXXXXXXXXXXXX--ADYQITGMDNWIKLP------GCQY 407
L +P N+ V + + L W+ Y+ + NW + C
Sbjct: 269 LPAPGNLKVHLYNAQQALSWEPVSLDSDPRPVVYQVQYKYSTSSNWYDVNKEDSKVDCTN 328
Query: 408 VTSTECNFSSIKLKSVYEK---IKLRIRAETGNSTSPWYEVEPFIPFQEAQIGPPD-VHL 575
+T TEC+F++ L + + I LR+RA+ G S W F ++ A IGPP+ + +
Sbjct: 329 LTRTECDFTANSLSEGFPRRFNISLRVRAKLGGLVSAWATAPWFEHYRNATIGPPENIRV 388
Query: 576 EAEDKAIIINLSPPGTKNSVMWAMDSSSFVYSLVIWKNSSSLEERTKTVYARDKIHQLSP 755
E+ ++II LS P + + FVY + W+ + + + ++ L P
Sbjct: 389 TPEEGSLIIRLSAPFDVPAT-----EAYFVYCVYYWEKAGAKQVTRPFRSNFITLNDLKP 443
Query: 756 ETTYCLKVKAGL 791
YC +VKA L
Sbjct: 444 LRVYCFQVKAEL 455
>ref|XP_002690307.1| PREDICTED: interleukin 22-binding protein-like [Bos taurus].
Length = 230
Score = 50.4 bits (119), Expect = 2e-06
Identities = 44/203 (21%), Positives = 85/203 (41%), Gaps = 6/203 (2%)
Frame = +3
Query: 183 FLGATTLMLVAGAPWVLPAGGADLRSPENVVVSIIDDNFILKWKXXXXXXXXXXXX-ADY 359
FLG +L+ G PA + P+ V + + IL+W+ Y
Sbjct: 7 FLGFLLSVLLPGVVETQPAN--ESLKPQRVHFQSRNFHNILRWQPGQACLGNNSIYFVQY 64
Query: 360 QITGMDNWIKLPGCQYVTSTECNFSSIKLKSVYEKIKLRIRAETGNSTSPWYEVEPFIPF 539
++ G W C + C+ ++ + ++E R++ S W + FIP+
Sbjct: 65 KMYGERQWKNKETCWGIREFFCDLTN-ETSDIWEPYYGRVKTALAGIHSGWTMTQRFIPW 123
Query: 540 QEAQIGPPDVHLEAEDKAIIINLSPPG----TKNSVMWAMDSSSFVYSLVIWKNSSSLEE 707
E +I PP +++ + ++++NL P + +M+ VY + I+ NS E+
Sbjct: 124 WETKIDPPVMNITHVNGSLLVNLHAPNLPYRDQEGENVSMEYYELVYRVFIFNNSLEKEQ 183
Query: 708 RT-KTVYARDKIHQLSPETTYCL 773
+ + + +I SP T YC+
Sbjct: 184 KVYEGAHRVVEIKVTSPHTGYCV 206
>ref|XP_612334.4| PREDICTED: interleukin 22-binding protein [Bos taurus].
Length = 230
Score = 50.4 bits (119), Expect = 2e-06
Identities = 44/203 (21%), Positives = 85/203 (41%), Gaps = 6/203 (2%)
Frame = +3
Query: 183 FLGATTLMLVAGAPWVLPAGGADLRSPENVVVSIIDDNFILKWKXXXXXXXXXXXX-ADY 359
FLG +L+ G PA + P+ V + + IL+W+ Y
Sbjct: 7 FLGFLLSVLLPGVVETQPAN--ESLKPQRVHFQSRNFHNILRWQPGQACLGNNSIYFVQY 64
Query: 360 QITGMDNWIKLPGCQYVTSTECNFSSIKLKSVYEKIKLRIRAETGNSTSPWYEVEPFIPF 539
++ G W C + C+ ++ + ++E R++ S W + FIP+
Sbjct: 65 KMYGERQWKNKETCWGIREFFCDLTN-ETSDIWEPYYGRVKTALAGIHSGWTMTQRFIPW 123
Query: 540 QEAQIGPPDVHLEAEDKAIIINLSPPG----TKNSVMWAMDSSSFVYSLVIWKNSSSLEE 707
E +I PP +++ + ++++NL P + +M+ VY + I+ NS E+
Sbjct: 124 WETKIDPPVMNITHVNGSLLVNLHAPNLPYRDQEGENVSMEYYELVYRVFIFNNSLEKEQ 183
Query: 708 RT-KTVYARDKIHQLSPETTYCL 773
+ + + +I SP T YC+
Sbjct: 184 KVYEGAHRVVEIKVTSPHTGYCV 206
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,254,977
Number of extensions: 1008790
Number of successful extensions: 5213
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 5111
Number of HSP's successfully gapped: 8
Length of query: 338
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 235
Effective length of database: 14,273,310
Effective search space: 3354227850
Effective search space used: 3354227850
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Animal-Genome cDNA 20110601C-012752
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012752
(1015 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852266.1| PREDICTED: similar to interferon-alpha receptor... 337 1e-92
Alignment gi|XP_535581.2| PREDICTED: similar to interleukin 10 receptor, ... 81 2e-15
Alignment gi|XP_541119.2| PREDICTED: similar to interleukin 20 receptor, ... 69 5e-12
Alignment gi|XP_544863.2| PREDICTED: similar to interferon-gamma receptor... 54 3e-07
Alignment gi|XP_853473.1| PREDICTED: similar to Interleukin-10 receptor a... 52 9e-07
Alignment gi|NP_001019811.1| tissue factor [Canis lupus familiaris]. 49 8e-06
>ref|XP_852266.1| PREDICTED: similar to interferon-alpha receptor 1 precursor [Canis
familiaris].
Length = 569
Score = 337 bits (864), Expect = 1e-92
Identities = 169/279 (60%), Positives = 209/279 (74%), Gaps = 11/279 (3%)
Frame = +3
Query: 174 MLGFLGATTLMLVAGAPWVLPA--GGADLRSPENVVVSIIDDNFILKWKXXXXXXXXXXX 347
ML LGATT++LVAGAPW+LPA GG L+SP+NV V I+DD FIL+W
Sbjct: 1 MLTLLGATTVVLVAGAPWMLPAAAGGTTLKSPQNVEVYIVDDTFILRWNRSNPSIRNVTF 60
Query: 348 XADYQITGMDNWIKLPGCQYVTSTECNFSSIKLKSVYEKIKLRIRAETGNSTSPWYEVEP 527
A YQ G D W+KLPGCQ V +T C+FSS+KL +VY+K+KLRIRAE GN+TSPW+ ++
Sbjct: 61 SAYYQTLGNDTWLKLPGCQSVANTTCDFSSLKL-NVYDKVKLRIRAEEGNNTSPWHNIDS 119
Query: 528 FIPFQEAQIGPPDVHLEAEDKAIIINLSPPGTKNSVMWAMDSSSFVYSLVIWKNSSSLEE 707
F F++AQIGPP VHLEAEDK IIIN+S PG ++SVMWA+DSSSF YSL IWKNSSS E
Sbjct: 120 FTLFEKAQIGPPKVHLEAEDKTIIINISLPGARDSVMWALDSSSFTYSLDIWKNSSSGER 179
Query: 708 RTKTVYARDKIHQLSPETTYCLKVKAGLRSPRKVGVYSPVYCINTTVKHPLPFPENLEIN 887
RT+TVY+RDKI+ LSPETTYCLKVKA L PRK G+YSPVYCI T V + LP PEN+ ++
Sbjct: 180 RTETVYSRDKIYNLSPETTYCLKVKARL-LPRKNGIYSPVYCIKTPVANKLPPPENIRLD 238
Query: 888 AENRVYVS*WNYNY---------ENVTFQAQWLHAFFKR 977
++N ++V W+Y Y NVTFQAQWL+A+ K+
Sbjct: 239 SKNNIFVLRWDYPYGSVKWGHARPNVTFQAQWLYAYLKK 277
Score = 64.3 bits (155), Expect = 2e-10
Identities = 41/159 (25%), Positives = 79/159 (49%), Gaps = 5/159 (3%)
Frame = +3
Query: 381 WIKLPGCQYVTSTECNFSSIKLKSVYEK--IKLRIRAETGNSTSPWYEVEPFIPFQEAQI 554
W ++PGC+ V +T+C F L++ + K +R++A GN+TS W + E F + +
Sbjct: 286 WKQIPGCKNVHTTQCVF----LQNTFRKGIYLIRVQASDGNTTSVWSKEEKFDAQLQITL 341
Query: 555 GPPDVHLEA-EDKAIIINLSPPGTKNSVMWAMDSSSFVYSLVIWKNSSSLEERTKTVYAR 731
PP + +++ D ++ + +S P + + +Y +V W+N+S+ E + +
Sbjct: 342 LPPVITMKSTNDVSLRVYISAPEESENKP-VNQNFPLIYEIVFWENTSNAERKIREKKTD 400
Query: 732 DKIHQLSPETTYCLKVKAGLRSPR--KVGVYSPVYCINT 842
+L P T YC+K +A + + K +S C T
Sbjct: 401 FTFSKLKPLTEYCVKARALIEDDKWNKSSGFSDTVCEKT 439
>ref|XP_535581.2| PREDICTED: similar to interleukin 10 receptor, beta precursor
[Canis familiaris].
Length = 374
Score = 80.9 bits (198), Expect = 2e-15
Identities = 64/229 (27%), Positives = 99/229 (43%), Gaps = 4/229 (1%)
Frame = +3
Query: 168 RTMLGFLGATTLMLVAGAPWVLPAGGADLRSPENVVVSIIDDNFILKWKXXXXXXXXXXX 347
R++ LG LM G + P+NV + ++ IL+W+
Sbjct: 3 RSLRSLLGGCLLMSALGL----------VPPPKNVRMKSVNFKNILQWELPAFPKGTLTF 52
Query: 348 XADYQITGMDNWIKLPG-CQYVTSTECNFSSIKLKSVYEKIKLRIRAETGNSTSPWYEVE 524
A YQ ++ K C TEC+FSS+ S Y LR+RAE + S W +
Sbjct: 53 TAQYQ-----SYRKFQDLCTSTAFTECDFSSL---SKYGDHTLRVRAEFADEHSDWVNIT 104
Query: 525 PFIPFQEAQIGPPDVHLEAEDKAIIINLSPPGTKNSV-MWAMDS--SSFVYSLVIWKNSS 695
F P + IGPP + +EA ++ + P +N W M + +S+ Y++ WKN S
Sbjct: 105 -FCPVDDTMIGPPGMQVEALANSLHLRFLAPKIENEPETWTMRNIYNSWAYNVQYWKNGS 163
Query: 696 SLEERTKTVYARDKIHQLSPETTYCLKVKAGLRSPRKVGVYSPVYCINT 842
+ Y + + L P TTYC++V+ L K G +S C T
Sbjct: 164 DEKWPITCQYDFEVLRDLEPWTTYCVRVQGFLPERNKTGEWSKPVCEQT 212
>ref|XP_541119.2| PREDICTED: similar to interleukin 20 receptor, alpha [Canis
familiaris].
Length = 558
Score = 69.3 bits (168), Expect = 5e-12
Identities = 58/224 (25%), Positives = 95/224 (42%), Gaps = 10/224 (4%)
Frame = +3
Query: 201 LMLVAGAPW---VLPAGGADLRSPENVVVSIIDDNFILKWKXXXXXXXXXXXXA-DYQIT 368
L+L+A AP VL G L P N+ I+ IL+W Y I
Sbjct: 29 LLLLAAAPSGRAVLCISGG-LPKPTNITFLSINMKNILQWSPPEGLQGAEVTYTVQYFIY 87
Query: 369 GMDNWIKLPGCQYVTSTECNFSSIKLKSVYEKIKLRIRAETGNSTSPWYEVEPFIPFQEA 548
G W+ C+ + T C+ S ++ + +++A + S W E F PF E
Sbjct: 88 GQKKWLSKSECRNINRTCCDLS-VETSDYEHQYYAKVKAIWETNCSKWAETGRFYPFLET 146
Query: 549 QIGPPDVHLEAEDKAIIINLSPP------GTKNSVMWAMDSSSFVYSLVIWKNSSSLEER 710
QIGPP V L ++K+I I L+ P ++S+ S+ Y++ I+ S+
Sbjct: 147 QIGPPRVALTTDEKSISIVLTAPEKWKRSPEESSISMRQIYSNLKYNVSIYNTKSNRMWS 206
Query: 711 TKTVYARDKIHQLSPETTYCLKVKAGLRSPRKVGVYSPVYCINT 842
+ L P+T YC+ V++ + P ++ S C+ T
Sbjct: 207 QCVTNHTLVLVWLEPDTLYCILVESFVPGPPRLAQPSEKQCVRT 250
>ref|XP_544863.2| PREDICTED: similar to interferon-gamma receptor beta chain
precursor [Canis familiaris].
Length = 363
Score = 53.5 bits (127), Expect = 3e-07
Identities = 58/246 (23%), Positives = 97/246 (39%), Gaps = 18/246 (7%)
Frame = +3
Query: 159 GRPRTMLGFLGATTLMLVAGAPWVLPAGGADLRSPENVVVSIIDDNFILKWKXXXXXXXX 338
G PR G TL +V PW + L +P N V + + +L W+
Sbjct: 34 GHPRK-----GTLTLAVV---PW---DSLSQLPAPRNPKVHLYNAERVLSWEPVSLSNDS 82
Query: 339 XXXX--ADYQITGMDNWIKLP------GCQYVTSTECNFSSIKLKSVYE---KIKLRIRA 485
Y+ W C +T+ EC+F+ + + LR+RA
Sbjct: 83 RPVVYQVQYKYASGSQWYDFSVDSIGVNCMNITTMECDFTPTSPSQEFLPHLNVSLRVRA 142
Query: 486 ETGNSTSPWYEVEPFIPFQEAQIGPPD-VHLEAEDKAIIINLSPPGTKNSVMWAMDSSSF 662
+ G+ S W V F + +GPP+ V + + +++I S P + S++F
Sbjct: 143 KVGDLVSTWVRVPWFQYLRNVTVGPPENVWVTPGEGSLVIRFSSPFDISP-----SSATF 197
Query: 663 VYSLVIWKNSSSLEERTKTVYARDKI--HQLSPETTYCLKVKAGL----RSPRKVGVYSP 824
+Y + W+ ++ K + + I + L P YCL+VKA L ++G S
Sbjct: 198 LYYVHYWEKGGI--QKVKGPFRSNSIVLNDLKPLREYCLQVKAQLVWTVSKLSRLGHLSN 255
Query: 825 VYCINT 842
V C T
Sbjct: 256 VSCYET 261
>ref|XP_853473.1| PREDICTED: similar to Interleukin-10 receptor alpha chain precursor
(IL-10R-A) (IL-10R1) [Canis familiaris].
Length = 653
Score = 52.0 bits (123), Expect = 9e-07
Identities = 49/212 (23%), Positives = 83/212 (39%), Gaps = 8/212 (3%)
Frame = +3
Query: 243 GADLRSPENVVVSIIDDNFILKWKXXXXXXXXXXXXADYQITGMDNWIKLPGCQYVTSTE 422
G +L SP +V + IL W + G++ W ++P C
Sbjct: 104 GTELPSPSSVWFEAEFFSHILHWTPIPKPSNSTYYEVELLRYGLEPWKRIPSCNQTQVLF 163
Query: 423 CNFSSIKLKSVYEK-IKLRIRAETGNSTSPWYEVEPFIPFQEAQIGPPDVHLEAEDKAII 599
C+ + + L + + ++RA GN +S W E + V LE E+ I+
Sbjct: 164 CDLTMVTLDLYHNNGYRAKVRAVDGNQSSNWTLTNTRFSMDEVNLTVGSVKLEVENGIIL 223
Query: 600 INLSPPGTKNSVMWAMDSSSF----VYSLVIWKNSSSLEERTKTVYARDKIHQLSPE--- 758
+ PP + + S F Y + I K + TKTV + + LSP
Sbjct: 224 GKIQPPRPRIAPTGDTYESIFQHFREYKIEIRKVPGNY-TFTKTV--KHENFSLSPPGKL 280
Query: 759 TTYCLKVKAGLRSPRKVGVYSPVYCINTTVKH 854
+C+KVK + S G++S C+ T ++
Sbjct: 281 GNFCVKVKPSVSSRMNNGIWSKEECVVLTYQY 312
>ref|NP_001019811.1| tissue factor [Canis lupus familiaris].
Length = 292
Score = 48.9 bits (115), Expect = 8e-06
Identities = 57/248 (22%), Positives = 101/248 (40%), Gaps = 20/248 (8%)
Frame = +3
Query: 162 RPRTMLGFLGATTLMLVAGAPWVL-----PAGGADLRSPENVVVSIIDDNFILKWKXXXX 326
RPR A L+L+A W L +G AD+ N+ + IL+W+
Sbjct: 6 RPRGPRAEAAAARLLLLA---WALLQVAGASGTADVVVAYNLTWKSTNFKTILEWEPKPI 62
Query: 327 XXXXXXXXADYQITGMDNWIKLPGCQYVTSTECNFSSIKLKSVYEKIKLRIRAETGNSTS 506
+ + NW C Y T TEC+ + + V++ + R+ + ++T
Sbjct: 63 NHVYTVQISPR----LGNWKSK--CFYTTDTECDLTDEIVNDVHQTYQARVFSYPADATD 116
Query: 507 -----PWYEVEPFIPFQEAQIGPP----------DVHLEAEDKAIIINLSPPGTKNSVMW 641
P+ FIP+ E ++G P ++++ +D ++ ++ ++
Sbjct: 117 YSGEPPFTNSPEFIPYIETKLGQPTIQSFKQVGTELNVIVQDARTLVKVNGTFLSLRDVF 176
Query: 642 AMDSSSFVYSLVIWKNSSSLEERTKTVYARDKIHQLSPETTYCLKVKAGLRSPRKVGVYS 821
D S Y+L WK SS+ ++ KT + + + YC V+AG+ S RK S
Sbjct: 177 GKDLS---YTLYYWKASSTGKKTAKT-NTNEFLIDVDEGQNYCFSVQAGIPS-RKANQKS 231
Query: 822 PVYCINTT 845
P I T
Sbjct: 232 PESPIECT 239
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,951,789
Number of extensions: 1043857
Number of successful extensions: 5440
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5359
Number of HSP's successfully gapped: 7
Length of query: 338
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 235
Effective length of database: 15,440,896
Effective search space: 3628610560
Effective search space used: 3628610560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012752
(1015 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_998937.1| interferon alpha/beta receptor 1 precursor [Sus... 503 e-143
Alignment gi|NP_998936.1| interleukin-10 receptor subunit beta [Sus scrof... 78 7e-15
Alignment gi|NP_001104728.1| interferon gamma receptor 2 [Sus scrofa]. 59 6e-09
Alignment gi|XP_003358614.1| PREDICTED: interleukin-20 receptor subunit b... 55 6e-08
>ref|NP_998937.1| interferon alpha/beta receptor 1 precursor [Sus scrofa].
Length = 560
Score = 503 bits (1295), Expect = e-143
Identities = 247/268 (92%), Positives = 248/268 (92%)
Frame = +3
Query: 174 MLGFLGATTLMLVAGAPWVLPAGGADLRSPENVVVSIIDDNFILKWKXXXXXXXXXXXXA 353
MLG LGATTLMLVAGAPWVLPAGGADLRSPENVVVSIIDDNFILKWK A
Sbjct: 1 MLGLLGATTLMLVAGAPWVLPAGGADLRSPENVVVSIIDDNFILKWKSSSESVSNVTFSA 60
Query: 354 DYQITGMDNWIKLPGCQYVTSTECNFSSIKLKSVYEKIKLRIRAETGNSTSPWYEVEPFI 533
DYQITGMDNWIKLPGCQYVTSTECNFSSIKLKSVYEK KLRIRAETGNSTSPWYEVEPFI
Sbjct: 61 DYQITGMDNWIKLPGCQYVTSTECNFSSIKLKSVYEKTKLRIRAETGNSTSPWYEVEPFI 120
Query: 534 PFQEAQIGPPDVHLEAEDKAIIINLSPPGTKNSVMWAMDSSSFVYSLVIWKNSSSLEERT 713
PFQEAQIGPPDVHLEAEDKAIIINLSPPGTKNSVMWAMDSSSFVYSLVIWKNSSSLEERT
Sbjct: 121 PFQEAQIGPPDVHLEAEDKAIIINLSPPGTKNSVMWAMDSSSFVYSLVIWKNSSSLEERT 180
Query: 714 KTVYARDKIHQLSPETTYCLKVKAGLRSPRKVGVYSPVYCINTTVKHPLPFPENLEINAE 893
KTVYARDKIHQLSPETTYCLKVKAGLRSPRKVGVYSPVYCINTTVKH LP PENLEINAE
Sbjct: 181 KTVYARDKIHQLSPETTYCLKVKAGLRSPRKVGVYSPVYCINTTVKHHLPSPENLEINAE 240
Query: 894 NRVYVS*WNYNYENVTFQAQWLHAFFKR 977
NRVYV WNY YENVTFQAQWLHAF K+
Sbjct: 241 NRVYVLKWNYTYENVTFQAQWLHAFLKK 268
Score = 62.8 bits (151), Expect = 3e-10
Identities = 52/212 (24%), Positives = 99/212 (46%), Gaps = 15/212 (7%)
Frame = +3
Query: 252 LRSPENVVVSIIDDNFILKWKXXXXXXXXXXXXADYQITGM-----DNWIKLPGCQYVTS 416
L SPEN+ ++ + ++LKW + + D W ++P C+ V +
Sbjct: 229 LPSPENLEINAENRVYVLKWNYTYENVTFQAQWLHAFLKKIPEDHSDKWKQIPNCENVKT 288
Query: 417 TECNF-SSIKLKSVYEKIKLRIRAETGNSTSPWYEVEPFIPFQEAQIGPPDVHLE-AEDK 590
T C F ++ K ++ +R++A GNSTS W E + F + + PP ++++ D
Sbjct: 289 THCVFPQNVFTKGIFF---IRVQASNGNSTSLWSEEKRFNTEMQTILFPPVINMKPINDA 345
Query: 591 AIIINLSPPGTKNSVMWAMDS-SSFVYSLVIWKNSSS-----LEERTKTVYARDKIHQLS 752
++ + + P K S +++ +Y ++ +N+S LE+RT ++ L
Sbjct: 346 SLRVGIGAP--KESEDKSVNQLYPLIYEVIFRENTSDTERDVLEKRTDFTFS-----NLK 398
Query: 753 PETTYCLKVKAGLRSPR--KVGVYSPVYCINT 842
P T YC+K +A + + R + V+S C T
Sbjct: 399 PLTVYCVKARALIENDRWNRSSVFSDTVCEKT 430
>ref|NP_998936.1| interleukin-10 receptor subunit beta [Sus scrofa].
Length = 362
Score = 78.2 bits (191), Expect = 7e-15
Identities = 65/235 (27%), Positives = 101/235 (42%), Gaps = 3/235 (1%)
Frame = +3
Query: 168 RTMLGFLGATTLMLVAGAPWVLPAGGADLRSPENVVVSIIDDNFILKWKXXXXXXXXXXX 347
R++ +LG +LV+ V+P PENV ++ ++ IL+W
Sbjct: 3 RSLRNWLGGC--LLVSALGMVVPP-------PENVRMNSVNFKNILQWDSPAFPQGDLTF 53
Query: 348 XADYQITGMDNWIKLPGCQYVTSTECNFSSIKLKSVYEKIKLRIRAETGNSTSPWYEVEP 527
A Y C + TEC+FSS+ S Y LR+RAE + S W +
Sbjct: 54 TAQYHSYRQFQ----DQCVSIILTECDFSSL---SKYGDHILRVRAEFADEHSDWINIT- 105
Query: 528 FIPFQEAQIGPPDVHLEAEDKAIIINLSPPGTKNSV-MWAMDS--SSFVYSLVIWKNSSS 698
F P + IGPP + +EA ++ + P +N W + + +S+ Y + WKN S
Sbjct: 106 FCPVDDTIIGPPGMQVEALANSLHMRFLAPKIENEPETWTVRNIYNSWAYHVQYWKNGSD 165
Query: 699 LEERTKTVYARDKIHQLSPETTYCLKVKAGLRSPRKVGVYSPVYCINTTVKHPLP 863
+ Y + + L TTYC++V+A L K G +S C TT P
Sbjct: 166 EKFAVTAQYDFEVLRNLESSTTYCVQVRAFLPDRNKTGEWSDPVCGQTTNDETTP 220
>ref|NP_001104728.1| interferon gamma receptor 2 [Sus scrofa].
Length = 369
Score = 58.5 bits (140), Expect = 6e-09
Identities = 52/215 (24%), Positives = 92/215 (42%), Gaps = 17/215 (7%)
Frame = +3
Query: 252 LRSPENVVVSIIDDNFILKWKXXXXXXXXXXXX--ADYQITGMDNWIKLP------GCQY 407
L P+N+ V + + L W Y+ + NW + C
Sbjct: 34 LPPPQNLKVRLYNAQQALSWDPVTLSNDTRPVVYQVQYRYSTSHNWYDVNKRDISVDCTN 93
Query: 408 VTSTECNFSSIKLKSVYEK---IKLRIRAETGNSTSPWYEVEPFIPFQEAQIGPPD-VHL 575
++ TEC+F++ L + + I LR+RA+ G+ SPW F ++ A IGPP+ + +
Sbjct: 94 LSRTECDFTANSLSKGFPRQFNISLRVRAKVGDRVSPWVTAPWFEHYRNATIGPPENIWV 153
Query: 576 EAEDKAIIINLSPPGTKNSVMWAMDSSSFVYSLVIWKNSSSLEERTKTVYAR-DKIHQLS 752
E+ ++II S P + S +F V ++ + +++ T+ ++ L
Sbjct: 154 TPEEGSLIIRFSSPFDVPA------SVAFFSYYVYYREMAGIQQVTQPFRNNFITLNDLK 207
Query: 753 PETTYCLKVKAGL----RSPRKVGVYSPVYCINTT 845
P YC +VKA L + + G S + C TT
Sbjct: 208 PLRVYCFQVKAELFLVKENISRSGHLSNISCSETT 242
>ref|XP_003358614.1| PREDICTED: interleukin-20 receptor subunit beta-like [Sus scrofa].
Length = 304
Score = 55.1 bits (131), Expect = 6e-08
Identities = 44/213 (20%), Positives = 80/213 (37%), Gaps = 8/213 (3%)
Frame = +3
Query: 222 PWVLPAGGADLRSPENVVVSIIDDNFILKWKXXXXXXXXXXXXADYQ-----ITGMDNWI 386
P +L G A L +P+N+ V + +L W +YQ + WI
Sbjct: 19 PCLLTDGVAVLPAPQNISVQSTNMKHVLTWSPVMVPEEIVYYSVEYQGEYESLYMSHIWI 78
Query: 387 KLPGCQYVTSTECNFSSIKLKSVYEKIKLRIRAETGNSTSPWYEVEPFIPFQEAQIGPPD 566
C T EC+ + +V LR+RA G+ TS W ++ + PP
Sbjct: 79 PSNWCSPTTGLECDITDDITATV--PYNLRVRATLGSQTSAWSTLKHPFNRNSTTLIPPG 136
Query: 567 VHLEAEDKAIIINLSPPGTKNSVMWAMDSSSFVYSLVIWKNSSSLEERTKTVYARD---K 737
+ + + ++I L G + F + + W+ +E K V
Sbjct: 137 MEVTKDGFHLVIKLEDLGPQ-----------FEFFVAYWRREPGAKEHVKVVRPGGIPMH 185
Query: 738 IHQLSPETTYCLKVKAGLRSPRKVGVYSPVYCI 836
+ + P TYC+K + +++ + +S C+
Sbjct: 186 LETMEPGATYCVKARTFVKAIGRYSAFSQAECV 218
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,976,500
Number of extensions: 649886
Number of successful extensions: 3442
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3377
Number of HSP's successfully gapped: 5
Length of query: 338
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 238
Effective length of database: 8,854,232
Effective search space: 2107307216
Effective search space used: 2107307216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012752
(1015 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034638.2| interferon alpha/beta receptor 1 precursor [Mus... 252 4e-67
Alignment gi|NP_032375.2| interleukin-10 receptor subunit beta [Mus muscu... 80 2e-15
Alignment gi|NP_032364.1| interferon gamma receptor 2 [Mus musculus]. 76 4e-14
Alignment gi|NP_766374.1| interleukin-20 receptor subunit alpha precursor... 69 8e-12
>ref|NP_034638.2| interferon alpha/beta receptor 1 precursor [Mus musculus].
Length = 590
Score = 252 bits (643), Expect = 4e-67
Identities = 130/270 (48%), Positives = 179/270 (66%), Gaps = 3/270 (1%)
Frame = +3
Query: 174 MLGFLGATTLMLVAGAPWVLP--AGGADLRSPENVVVSIIDDNFILKWKXXXXXXXXXXX 347
ML +GA L+LVAGAPWVLP AGG +L+ PEN+ V IIDDN+ LKW
Sbjct: 1 MLAVVGAAALVLVAGAPWVLPSAAGGENLKPPENIDVYIIDDNYTLKWSSHGESMGSVTF 60
Query: 348 XADYQITGMDNWIKLPGCQYVTSTECNFSSIKLKSVYEKIKLRIRAETGNSTSPWYEVEP 527
A+Y+ W+K+P CQ+ T+T+C FS + +VY K + R+RAE GNSTS W EV+P
Sbjct: 61 SAEYRTKDEAKWLKVPECQHTTTTKCEFSLLDT-NVYIKTQFRVRAEEGNSTSSWNEVDP 119
Query: 528 FIPFQEAQIGPPDVHLEAEDKAIIINLSPPGTKNSVMWAMDSSSFVYSLVIWKNSSSLEE 707
FIPF A + PP+V LEAEDKAI++++SPPG + MWA++ SF Y++ IW+ SSS ++
Sbjct: 120 FIPFYTAHMSPPEVRLEAEDKAILVHISPPGQDGN-MWALEKPSFSYTIRIWQKSSSDKK 178
Query: 708 RTKTVYARDKIHQLSPETTYCLKVKAGLRSPRKVGVYSPVYCINTTVKHPLPFPENLEIN 887
+ Y +KI +L PETTYCL+VKA S +K YS V CI+TTV + +P P NL+++
Sbjct: 179 TINSTYYVEKIPELLPETTYCLEVKAIHPSLKKHSNYSTVQCISTTVANKMPVPGNLQVD 238
Query: 888 AENRVYVS*WNY-NYENVTFQAQWLHAFFK 974
A+ + YV W+Y +V F+AQWL + K
Sbjct: 239 AQGKSYVLKWDYIASADVLFRAQWLPGYSK 268
Score = 48.5 bits (114), Expect = 8e-06
Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 5/161 (3%)
Frame = +3
Query: 375 DNWIKLPGCQYVTSTECNFSSIKLKSVYE-KIKLRIRAETGNSTSPWYEVEPFIPFQEAQ 551
D W +P C V +T C FS +VY L ++A GN TS W E E FI Q+
Sbjct: 276 DKWKPIPTCANVQTTHCVFSQ---DTVYTGTFFLHVQASEGNHTSFWSE-EKFIDSQKHI 331
Query: 552 IGPPDV-HLEAEDKAIIINLSPPGTKNSVMWAMDSS--SFVYSLVIWKNSSSLEERTKTV 722
+ PP V + A +++ ++ DS+ Y ++ W+N+S+ + +
Sbjct: 332 LPPPPVITVTAMSDTLLVYVN----------CQDSTCDGLNYEIIFWENTSNTKISMEKD 381
Query: 723 YARDKIHQLSPETTYCLKVKAGLRS-PRKVGVYSPVYCINT 842
+ L P T YC++ + R+ K +S C T
Sbjct: 382 GPEFTLKNLQPLTVYCVQARVLFRALLNKTSNFSEKLCEKT 422
>ref|NP_032375.2| interleukin-10 receptor subunit beta [Mus musculus].
Length = 351
Score = 80.5 bits (197), Expect = 2e-15
Identities = 56/210 (26%), Positives = 102/210 (48%), Gaps = 5/210 (2%)
Frame = +3
Query: 228 VLPAGGADLRSPENVVVSIIDDNFILKWKXXXXXXXXXXXXADYQI--TGMDNWIKLPGC 401
++PA G + PE V ++ ++ IL+W+ A Y+ + D+ C
Sbjct: 16 LVPALGM-IPPPEKVRMNSVNFKNILQWEVPAFPKTNLTFTAQYESYRSFQDH------C 68
Query: 402 QYVTSTECNFSSIKLKSVYEKIKLRIRAETGNSTSPWYEVEPFIPFQEAQIGPPDVHLEA 581
+ ST+C+FS + S Y +R+RAE + S W V F P ++ IGPP++ +E+
Sbjct: 69 KRTASTQCDFSHL---SKYGDYTVRVRAELADEHSEWVNVT-FCPVEDTIIGPPEMQIES 124
Query: 582 EDKAIIINLSPPGTKNSV-MWAMDS--SSFVYSLVIWKNSSSLEERTKTVYARDKIHQLS 752
+++ + S P +N W + + S+ Y + WKN ++ + + + Y + + L
Sbjct: 125 LAESLHLRFSAPQIENEPETWTLKNIYDSWAYRVQYWKNGTNEKFQVVSPYDSEVLRNLE 184
Query: 753 PETTYCLKVKAGLRSPRKVGVYSPVYCINT 842
P TTYC++V+ L + G +S C T
Sbjct: 185 PWTTYCIQVQGFLLDQNRTGEWSEPICERT 214
>ref|NP_032364.1| interferon gamma receptor 2 [Mus musculus].
Length = 332
Score = 76.3 bits (186), Expect = 4e-14
Identities = 60/228 (26%), Positives = 105/228 (46%), Gaps = 13/228 (5%)
Frame = +3
Query: 201 LMLVAGAPWVLPAGGADLRSPENVVVSIIDDNFILKWKXXXXXXXXXXXXADYQITGMD- 377
L+ GA P + L +P N + + +D IL W+ + + +D
Sbjct: 12 LLCGLGAAASSPDSFSQLAAPLNPRLHLYNDEQILTWEPSPSSNDPRPVVYQVEYSFIDG 71
Query: 378 NWIKL--PGCQYVTSTECNFSS---IKLKSVYEKIKLRIRAETGNSTSPWYEVEPFIPFQ 542
+W +L P C +T T+C+ + +KL + LR+RA+ GN TS W +EPF ++
Sbjct: 72 SWHRLLEPNCTDITETKCDLTGGGRLKLFPHPFTVFLRVRAKRGNLTSKWVGLEPFQHYE 131
Query: 543 EAQIGPP-DVHLEAEDKAIIINLSPPGTKNSVMWAMDSSSFVYSLVIWKNSSSLEERTKT 719
+GPP ++ + +++I+ SPP ++F Y + W+ S + +E+ +
Sbjct: 132 NVTVGPPKNISVTPGKGSLVIHFSPP------FDVFHGATFQYLVHYWEKSETQQEQVEG 185
Query: 720 VYARDKI--HQLSPETTYCLKVKAGL----RSPRKVGVYSPVYCINTT 845
+ + I L P YCL+ +A L + R G+ S V C TT
Sbjct: 186 PFKSNSIVLGNLKPYRVYCLQTEAQLILKNKKIRPHGLLSNVSCHETT 233
>ref|NP_766374.1| interleukin-20 receptor subunit alpha precursor [Mus musculus].
Length = 546
Score = 68.6 bits (166), Expect = 8e-12
Identities = 52/223 (23%), Positives = 90/223 (40%), Gaps = 7/223 (3%)
Frame = +3
Query: 195 TTLMLVAGAPWVLPAGGADLRSPENVVVSIIDDNFILKWKXXXXXXXXXXXXA-DYQITG 371
T L+L+A + +P L P N+ I+ +L W Y I G
Sbjct: 21 TLLLLLAASGRAVPCVFCGLPKPTNITFLSINMKNVLHWNPPESLHGVEVTYTVQYFIYG 80
Query: 372 MDNWIKLPGCQYVTSTECNFSSIKLKSVYEKIKLRIRAETGNSTSPWYEVEPFIPFQEAQ 551
W+ C + T C+ S ++ + +++A S W E E F PF E Q
Sbjct: 81 QKKWLNASKCGSINRTYCDLS-VETSDYEHQFYAKVKAIWEARCSEWAETERFYPFLETQ 139
Query: 552 IGPPDVHLEAEDKAIIINLSPP------GTKNSVMWAMDSSSFVYSLVIWKNSSSLEERT 713
+ PP+V L +K+I I L+ P ++V + Y++ ++ S
Sbjct: 140 VSPPEVALTTGEKSISIALTAPEKWKRNPQDHTVSMQQIYPNLKYNVSVYNTKSRRTWSQ 199
Query: 714 KTVYARDKIHQLSPETTYCLKVKAGLRSPRKVGVYSPVYCINT 842
+ + L P T YC+ V++ + P ++ + S CI+T
Sbjct: 200 CVTNSTLVLSWLEPNTLYCVHVESLVPGPPRLPMPSQKQCIST 242
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,473,484
Number of extensions: 860663
Number of successful extensions: 4318
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4189
Number of HSP's successfully gapped: 5
Length of query: 338
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 236
Effective length of database: 12,553,887
Effective search space: 2962717332
Effective search space used: 2962717332
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012752
(1015 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000620.2| interferon alpha/beta receptor 1 precursor [Hom... 350 1e-96
Alignment gi|NP_000619.3| interleukin-10 receptor subunit beta precursor ... 84 2e-16
Alignment gi|NP_055247.2| interleukin-20 receptor subunit alpha precursor... 71 1e-12
Alignment gi|NP_005525.2| interferon gamma receptor 2 precursor [Homo sap... 52 9e-07
Alignment gi|NP_001984.1| tissue factor isoform 1 precursor [Homo sapiens]. 51 2e-06
Alignment gi|NP_851826.1| interleukin-22 receptor subunit alpha-2 isoform... 50 4e-06
>ref|NP_000620.2| interferon alpha/beta receptor 1 precursor [Homo sapiens].
Length = 557
Score = 350 bits (898), Expect = 1e-96
Identities = 175/270 (64%), Positives = 213/270 (78%), Gaps = 2/270 (0%)
Frame = +3
Query: 174 MLGFLGATTLMLVAGAPWVLPA--GGADLRSPENVVVSIIDDNFILKWKXXXXXXXXXXX 347
M+ LGATTL+LVA APWVL A GG +L+SP+ V V IIDDNFIL+W
Sbjct: 2 MVVLLGATTLVLVAVAPWVLSAAAGGKNLKSPQKVEVDIIDDNFILRWNRSDESVGNVTF 61
Query: 348 XADYQITGMDNWIKLPGCQYVTSTECNFSSIKLKSVYEKIKLRIRAETGNSTSPWYEVEP 527
DYQ TGMDNWIKL GCQ +TST+CNFSS+KL +VYE+IKLRIRAE N TS WYEV+
Sbjct: 62 SFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKL-NVYEEIKLRIRAEKEN-TSSWYEVDS 119
Query: 528 FIPFQEAQIGPPDVHLEAEDKAIIINLSPPGTKNSVMWAMDSSSFVYSLVIWKNSSSLEE 707
F PF++AQIGPP+VHLEAEDKAI+I++SP GTK+SVMWA+D SF YSLVIWKNSS +EE
Sbjct: 120 FTPFRKAQIGPPEVHLEAEDKAIVIHISP-GTKDSVMWALDGLSFTYSLVIWKNSSGVEE 178
Query: 708 RTKTVYARDKIHQLSPETTYCLKVKAGLRSPRKVGVYSPVYCINTTVKHPLPFPENLEIN 887
R + +Y+R KI++LSPETTYCLKVKA L + K+GVYSPV+CI TTV++ LP PEN+E++
Sbjct: 179 RIENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVS 238
Query: 888 AENRVYVS*WNYNYENVTFQAQWLHAFFKR 977
+N+ YV W+Y Y N+TFQ QWLHAF KR
Sbjct: 239 VQNQNYVLKWDYTYANMTFQVQWLHAFLKR 268
Score = 73.9 bits (180), Expect = 2e-13
Identities = 52/206 (25%), Positives = 91/206 (44%), Gaps = 8/206 (3%)
Frame = +3
Query: 249 DLRSPENVVVSIIDDNFILKWKXXXXXXXXXXXXADYQI-----TGMDNWIKLPGCQYVT 413
+L PEN+ VS+ + N++LKW + + W ++P C+ V
Sbjct: 228 ELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVK 287
Query: 414 STECNF-SSIKLKSVYEKIKLRIRAETGNSTSPWYEVEPFIPFQEAQIGPPDVHLEAEDK 590
+T+C F ++ K +Y LR++A GN+TS W E F +A + PP ++ +
Sbjct: 288 TTQCVFPQNVFQKGIY---LLRVQASDGNNTSFWSEEIKFDTEIQAFLLPPVFNIRSLSD 344
Query: 591 AIIINLSPPGTKNSVMWAMDSSSFVYSLVIWKNSSSLEERTKTVYARDKIHQLSPETTYC 770
+ I + P + D +Y ++ W+N+S+ E + + L P T YC
Sbjct: 345 SFHIYIGAPKQSGNTPVIQDYP-LIYEIIFWENTSNAERKIIEKKTDVTVPNLKPLTVYC 403
Query: 771 LKVKAGLRSPR--KVGVYSPVYCINT 842
+K +A + K V+S C T
Sbjct: 404 VKARAHTMDEKLNKSSVFSDAVCEKT 429
>ref|NP_000619.3| interleukin-10 receptor subunit beta precursor [Homo sapiens].
Length = 325
Score = 84.0 bits (206), Expect = 2e-16
Identities = 59/204 (28%), Positives = 93/204 (45%), Gaps = 3/204 (1%)
Frame = +3
Query: 261 PENVVVSIIDDNFILKWKXXXXXXXXXXXXADYQITGMDNWIKLPGCQYVTSTECNFSSI 440
PENV ++ ++ IL+W+ A Y + I C T TEC+FSS+
Sbjct: 24 PENVRMNSVNFKNILQWESPAFAKGNLTFTAQY----LSYRIFQDKCMNTTLTECDFSSL 79
Query: 441 KLKSVYEKIKLRIRAETGNSTSPWYEVEPFIPFQEAQIGPPDVHLEAEDKAIIINLSPPG 620
S Y LR+RAE + S W + F P + IGPP + +E ++ + P
Sbjct: 80 ---SKYGDHTLRVRAEFADEHSDWVNIT-FCPVDDTIIGPPGMQVEVLADSLHMRFLAPK 135
Query: 621 TKNSV-MWAMDS--SSFVYSLVIWKNSSSLEERTKTVYARDKIHQLSPETTYCLKVKAGL 791
+N W M + +S+ Y++ WKN + + + Y + + L P TTYC++V+ L
Sbjct: 136 IENEYETWTMKNVYNSWTYNVQYWKNGTDEKFQITPQYDFEVLRNLEPWTTYCVQVRGFL 195
Query: 792 RSPRKVGVYSPVYCINTTVKHPLP 863
K G +S C TT +P
Sbjct: 196 PDRNKAGEWSEPVCEQTTHDETVP 219
>ref|NP_055247.2| interleukin-20 receptor subunit alpha precursor [Homo sapiens].
Length = 553
Score = 71.2 bits (173), Expect = 1e-12
Identities = 57/224 (25%), Positives = 95/224 (42%), Gaps = 10/224 (4%)
Frame = +3
Query: 201 LMLVAGAPW--VLPAGGADLRSPENVVVSIIDDNFILKWKXXXXXXXXXXXXA-DYQITG 371
L+L+ APW +P L P N+ I+ +L+W Y I G
Sbjct: 18 LLLLLAAPWGRAVPCVSGGLPKPANITFLSINMKNVLQWTPPEGLQGVKVTYTVQYFIYG 77
Query: 372 MDNWIKLPGCQYVTSTECNFSSIKLKSVYEKIKLRIRAETGNSTSPWYEVEPFIPFQEAQ 551
W+ C+ + T C+ S+ + + +++A G S W E F PF E Q
Sbjct: 78 QKKWLNKSECRNINRTYCDLSA-ETSDYEHQYYAKVKAIWGTKCSKWAESGRFYPFLETQ 136
Query: 552 IGPPDVHLEAEDKAIIINLSPPGT-KNSVMWAMDSSSFVYSLVIWKNSSSLEERTKTVYA 728
IGPP+V L ++K+I + L+ P K + S +YS + + N S L ++ ++
Sbjct: 137 IGPPEVALTTDEKSISVVLTAPEKWKRNPEDLPVSMQQIYSNLKY-NVSVLNTKSNRTWS 195
Query: 729 RDKIHQ------LSPETTYCLKVKAGLRSPRKVGVYSPVYCINT 842
+ + L P T YC+ V++ + P + S C T
Sbjct: 196 QCVTNHTLVLTWLEPNTLYCVHVESFVPGPPRRAQPSEKQCART 239
>ref|NP_005525.2| interferon gamma receptor 2 precursor [Homo sapiens].
Length = 337
Score = 52.0 bits (123), Expect = 9e-07
Identities = 39/156 (25%), Positives = 68/156 (43%), Gaps = 8/156 (5%)
Frame = +3
Query: 399 CQYVTSTECNFSSIKLKSVYE---KIKLRIRAETGNSTSPWYEVEPFIPFQEAQIGPPD- 566
C +T+TEC+F++ + + + LR+RAE G S W + F ++ +GPP+
Sbjct: 86 CTQITATECDFTAASPSAGFPMDFNVTLRLRAELGALHSAWVTMPWFQHYRNVTVGPPEN 145
Query: 567 VHLEAEDKAIIINLSPPGTKNSVMWAMDSSSFVYSLVIWKNSSSLEERTKTVYARDKIHQ 746
+ + + ++II S P A F Y + W+ + + +
Sbjct: 146 IEVTPGEGSLIIRFSSPFDIADTSTAF----FCYYVHYWEKGGIQQVKGPFRSNSISLDN 201
Query: 747 LSPETTYCLKVKAGLRSPR----KVGVYSPVYCINT 842
L P YCL+V+A L + +VG S + C T
Sbjct: 202 LKPSRVYCLQVQAQLLWNKSNIFRVGHLSNISCYET 237
>ref|NP_001984.1| tissue factor isoform 1 precursor [Homo sapiens].
Length = 295
Score = 50.8 bits (120), Expect = 2e-06
Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 22/168 (13%)
Frame = +3
Query: 399 CQYVTSTECNFSSIKLKSVYEKIKLRIRA-------ETGNSTSPWYEVEP-FIPFQEAQI 554
C Y T TEC+ + +K V + R+ + TG++ P YE P F P+ E +
Sbjct: 81 CFYTTDTECDLTDEIVKDVKQTYLARVFSYPAGNVESTGSAGEPLYENSPEFTPYLETNL 140
Query: 555 GPPD----------VHLEAEDKAIIINLSPPGTKNSVMWAMD--SSSFVYSLVIWKNSSS 698
G P V++ ED+ ++ + N+ + D +Y+L WK+SSS
Sbjct: 141 GQPTIQSFEQVGTKVNVTVEDERTLVRRN-----NTFLSLRDVFGKDLIYTLYYWKSSSS 195
Query: 699 LEERTKTVYARDKIHQLSPETTYCLKVKAGL--RSPRKVGVYSPVYCI 836
++ KT + + + YC V+A + R+ + SPV C+
Sbjct: 196 GKKTAKT-NTNEFLIDVDKGENYCFSVQAVIPSRTVNRKSTDSPVECM 242
>ref|NP_851826.1| interleukin-22 receptor subunit alpha-2 isoform 2 [Homo sapiens].
Length = 231
Score = 49.7 bits (117), Expect = 4e-06
Identities = 47/206 (22%), Positives = 83/206 (40%), Gaps = 7/206 (3%)
Frame = +3
Query: 177 LGFLGATTLMLVAGAPWVLPAGGADLRSPENVVVSIIDDNFILKWKXXXXXXXXXXXX-A 353
LGFL + L VAG + P+ V + + IL+W+
Sbjct: 8 LGFLISFFLTGVAGTQ-----STHESLKPQRVQFQSRNFHNILQWQPGRALTGNSSVYFV 62
Query: 354 DYQITGMDNWIKLPGCQYVTSTECNFSSIKLKSVYEKIKLRIRAETGNSTSPWYEVEPFI 533
Y+I G W C C+ +S + + E R+RA + S S W F
Sbjct: 63 QYKIYGQRQWKNKEDCWGTQELSCDLTS-ETSDIQEPYYGRVRAASAGSYSEWSMTPRFT 121
Query: 534 PFQEAQIGPPDVHLEAEDKAIIINLSPPG-----TKNSVMWAMDSSSFVYSLVIWKNSSS 698
P+ E +I PP +++ + ++++ L P K + D +Y + I NS
Sbjct: 122 PWWETKIDPPVMNITQVNGSLLVILHAPNLPYRYQKEKNVSIEDYYELLYRVFIINNSLE 181
Query: 699 LEERT-KTVYARDKIHQLSPETTYCL 773
E++ + + +I L+P ++YC+
Sbjct: 182 KEQKVYEGAHRAVEIEALTPHSSYCV 207
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,211,009
Number of extensions: 1022047
Number of successful extensions: 5285
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5170
Number of HSP's successfully gapped: 7
Length of query: 338
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 235
Effective length of database: 14,901,872
Effective search space: 3501939920
Effective search space used: 3501939920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012752
(1015 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL894601.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 361 5e-97
gb|GL892856.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 254 8e-65
gb|GL892890.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 252 3e-64
gb|GL894523.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 176 2e-41
gb|GL893257.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 60 2e-06
>gb|GL894601.1| Sus scrofa unplaced genomic scaffold chrU_scaffold325
Length = 566
Score = 361 bits (182), Expect = 5e-97
Identities = 182/182 (100%)
Strand = Plus / Plus
Query: 365 aacagggatggataattggataaagttgcctggatgtcaatatgttactagcactgaatg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aacagggatggataattggataaagttgcctggatgtcaatatgttactagcactgaatg 319
Query: 425 caacttttcttccatcaagcttaaaagcgtgtatgaaaaaattaaattgcgtataagagc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 caacttttcttccatcaagcttaaaagcgtgtatgaaaaaattaaattgcgtataagagc 379
Query: 485 agaaacaggaaacagcacttctccgtggtatgaggttgagccgtttataccatttcaaga 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agaaacaggaaacagcacttctccgtggtatgaggttgagccgtttataccatttcaaga 439
Query: 545 ag 546
||
Sbjct: 440 ag 441
>gb|GL892856.1| Sus scrofa unplaced genomic scaffold chrU_scaffold168
Length = 207
Score = 254 bits (128), Expect = 8e-65
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 719 tgtttatgccagagataaaattcaccaactctcaccagagacaacttactgtttaaaagt 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtttatgccagagataaaattcaccaactctcaccagagacaacttactgtttaaaagt 60
Query: 779 taaagccggactccgttcgccaagaaaagtcggtgtctacagtccagtgtattgtataaa 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 taaagccggactccgttcgccaagaaaagtcggtgtctacagtccagtgtattgtataaa 120
Query: 839 taccacag 846
||||||||
Sbjct: 121 taccacag 128
>gb|GL892890.1| Sus scrofa unplaced genomic scaffold chrU_scaffold171
Length = 210
Score = 252 bits (127), Expect = 3e-64
Identities = 127/127 (100%)
Strand = Plus / Minus
Query: 238 cagggggtgcagatctcagatctcctgaaaatgtcgtggtctctatcattgatgacaact 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 cagggggtgcagatctcagatctcctgaaaatgtcgtggtctctatcattgatgacaact 135
Query: 298 tcatcctgaaatggaagagcagcagtgaatccgtcagcaatgtgactttttcagcagatt 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 tcatcctgaaatggaagagcagcagtgaatccgtcagcaatgtgactttttcagcagatt 75
Query: 358 atcaaat 364
|||||||
Sbjct: 74 atcaaat 68
>gb|GL894523.1| Sus scrofa unplaced genomic scaffold chrU_scaffold318
Length = 520
Score = 176 bits (89), Expect = 2e-41
Identities = 110/117 (94%)
Strand = Plus / Plus
Query: 845 agtgaaacatcccctgcctttcccagaaaatctagaaattaatgctgaaaaccgggtcta 904
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtgaaacatcacctgccttcaccagaaaatctagaaattaatgctgaaaaccgggtcta 320
Query: 905 tgtttcttaatggaattacaactatgaaaatgtgacttttcaagctcagtggctcca 961
|||| | |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgttcttaaatggaattacacctatgaaaatgtgacttttcaagctcagtggctcca 377
>gb|GL893257.1| Sus scrofa unplaced genomic scaffold chrU_scaffold204
Length = 257
Score = 60.0 bits (30), Expect = 2e-06
Identities = 42/45 (93%), Gaps = 1/45 (2%)
Strand = Plus / Plus
Query: 972 aaaagattcctgaggacca-tcagaanagtggaaacaaataccaa 1015
||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 47 aaaagattcctgaggaccattcagacaagtggaaacaaataccaa 91
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,558,549
Number of extensions: 166
Number of successful extensions: 166
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 5
Length of query: 1015
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 994
Effective length of database: 2,808,413,156
Effective search space: 2791562677064
Effective search space used: 2791562677064
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)