Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012753
(2082 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776977.1| interferon alpha/beta receptor 1 precursor [Bos... 784 0.0
Alignment gi|NP_001070443.1| interleukin-10 receptor subunit beta [Bos ta... 91 4e-18
Alignment gi|NP_001193271.1| interleukin-20 receptor subunit alpha [Bos t... 78 3e-14
Alignment gi|XP_002684633.1| PREDICTED: interferon gamma receptor 2 (inte... 62 2e-09
Alignment gi|XP_592804.3| PREDICTED: interferon gamma receptor 2 (interfe... 62 2e-09
Alignment gi|XP_002690307.1| PREDICTED: interleukin 22-binding protein-li... 50 6e-06
Alignment gi|XP_612334.4| PREDICTED: interleukin 22-binding protein [Bos ... 50 6e-06
>ref|NP_776977.1| interferon alpha/beta receptor 1 precursor [Bos taurus].
Length = 560
Score = 784 bits (2025), Expect = 0.0
Identities = 383/562 (68%), Positives = 452/562 (80%), Gaps = 2/562 (0%)
Frame = +2
Query: 137 MLGFLGATTLMLVAGAPWVLPA--GGADLRSPENVVVSIIDDNFILKWKXXXXXXXXXXX 310
ML LGATTLMLVAG WVLPA G A+L+ PENV + IIDDNF LKW
Sbjct: 1 MLALLGATTLMLVAGR-WVLPAASGEANLK-PENVEIHIIDDNFFLKWNSSSESVKNVTF 58
Query: 311 XADYQITGMDNWIKLPGCQYVTSTECNFSSIKLKSVYEKIKLRIRAETGNSTSPWYEVEP 490
ADYQI G DNW KL GCQ++TST+CNFSS++L++V+EKI+LRIRAE GN+TS WYEVEP
Sbjct: 59 SADYQILGTDNWKKLSGCQHITSTKCNFSSVELENVFEKIELRIRAEEGNNTSTWYEVEP 118
Query: 491 FIPFQEAQIGPPDVHLEAEDKAIIINLSPPGTKNSVMWAMDSSSFVYSLVIWKNSSSLEE 670
F+PF EAQIGPPDVHLEAEDKAII+++SPPGTK+S+MWAMD SSF YS+VIWKNSSSLEE
Sbjct: 119 FVPFLEAQIGPPDVHLEAEDKAIILSISPPGTKDSIMWAMDRSSFRYSVVIWKNSSSLEE 178
Query: 671 RTKTVYARDKIHQLSPETTYCLKVKAGLRSPRKVGVYSPVYCINTTVKHHLPSPENLEIN 850
RT+TVY DKI++LSPE TYCLKVKA LR +VG YSPVYCINTT +H +PSPEN++IN
Sbjct: 179 RTETVYPEDKIYKLSPEITYCLKVKAELRLQSRVGCYSPVYCINTTERHKVPSPENIQIN 238
Query: 851 AENRVYVLKWNYTYENVTFQAQWLHAFLKKIPEDHSDKWKQIPNCENVKTTHCVFPQNVF 1030
A+N++YVLKW+Y YEN TFQAQWL AF KKIP +HSDKWKQIPNCENV +THCVFP+ V
Sbjct: 239 ADNQIYVLKWDYPYENATFQAQWLRAFFKKIPGNHSDKWKQIPNCENVTSTHCVFPREVS 298
Query: 1031 TKGIFFIRVQASNGNSTSLWSEEKRFNTEMQTILFPPVINMKPINDASLRVGIGAPKESE 1210
++GI+++RV+ASNGN TS WSEEK FNTEM+TI+FPPVI++K + D SL V +GA +ESE
Sbjct: 299 SRGIYYVRVRASNGNGTSFWSEEKEFNTEMKTIIFPPVISVKSVTDDSLHVSVGASEESE 358
Query: 1211 DKSVNQLYPLIYEVIFRENTSDTERDVLEKRTDFTFSNLKPLTVYCVKARALIENDRWNR 1390
+ SVNQLYPLIYEVIF ENTS+ ER VLEKRT+F F +LKPLTVYCVKARALIENDR N+
Sbjct: 359 NMSVNQLYPLIYEVIFWENTSNAERKVLEKRTNFIFPDLKPLTVYCVKARALIENDRRNK 418
Query: 1391 SSVFSDTVCEKTKPGSTSQAWLIAGILSAILLFPAVFYGVKVVSRCINYVFFPSSKPPST 1570
S SDTVCEKTKPG+TS+ WLI G +A+ P V Y V V RC+ YVFFPSSKPPS+
Sbjct: 419 GSSVSDTVCEKTKPGNTSKTWLIVGTCTALFSIPVVIYVVSVFLRCVKYVFFPSSKPPSS 478
Query: 1571 IDEYFAEQPLKNLLLSTSEEQTEICFIVXXXXXXXXXXXXXXXXXXHSRCSSQTNRDSGV 1750
+DEYF++QPL+NLLLSTSEEQTE CFI+ H + SSQT++DSG
Sbjct: 479 VDEYFSDQPLRNLLLSTSEEQTERCFIIENASIITEIEETDEIDEVHKKYSSQTSQDSGN 538
Query: 1751 YSNEDENSGSKIGEEILRQAAV 1816
YSNEDENSGSKI EE +Q +V
Sbjct: 539 YSNEDENSGSKISEEFPQQDSV 560
>ref|NP_001070443.1| interleukin-10 receptor subunit beta [Bos taurus].
Length = 317
Score = 90.9 bits (224), Expect = 4e-18
Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 4/237 (1%)
Frame = +2
Query: 131 RTMLGFLGATTLMLVAGAPWVLPAGGADLRSPENVVVSIIDDNFILKWKXXXXXXXXXXX 310
R++L +LG LM G + PENV ++ ++ IL+W+
Sbjct: 3 RSLLSWLGGCLLMSALGM----------VPPPENVRMNSVNFKNILRWESPAFPKGNLTF 52
Query: 311 XADYQITGMDNWIKLPG-CQYVTSTECNFSSIKLKSVYEKIKLRIRAETGNSTSPWYEVE 487
A YQ ++ K C + TEC+FSS+ S Y LR+RAE + +S W +
Sbjct: 53 TAQYQ-----SYRKFQDTCTSILLTECDFSSL---SKYGDHTLRVRAEFADESSEWINIT 104
Query: 488 PFIPFQEAQIGPPDVHLEAEDKAIIINLSPPGTKNSVM-WAMDS--SSFVYSLVIWKNSS 658
F P + IGPP + +EA ++ + P +N W M + +S+ Y + WKN S
Sbjct: 105 -FCPVDDTTIGPPRMQVEALANSLHVRFFAPRIENEPEPWTMRNIYNSWTYHVRYWKNGS 163
Query: 659 SLEERTKTVYARDKIHQLSPETTYCLKVKAGLRSPRKVGVYSPVYCINTTVKHHLPS 829
+ Y + + L +TTYC++V+ L K G +S C TT+ PS
Sbjct: 164 DEKFSISGQYDFEFLRNLESQTTYCVQVRGFLSDRNKAGEWSEPVCEQTTIDETTPS 220
Score = 84.3 bits (207), Expect = 4e-16
Identities = 78/287 (27%), Positives = 138/287 (48%), Gaps = 13/287 (4%)
Frame = +2
Query: 794 CINTTVKHHLPSPENLEINAENRVYVLKWN---YTYENVTFQAQWLHAFLKKIPEDHSDK 964
C+ + +P PEN+ +N+ N +L+W + N+TF AQ+ +K +
Sbjct: 12 CLLMSALGMVPPPENVRMNSVNFKNILRWESPAFPKGNLTFTAQYQS--YRKFQD----- 64
Query: 965 WKQIPNCENVKTTHCVFPQNVFTKGIFFIRVQASNGNSTSLWSEEKRFNTEMQTILFPPV 1144
C ++ T C F ++ G +RV+A + +S W F T + PP
Sbjct: 65 -----TCTSILLTECDF-SSLSKYGDHTLRVRAEFADESSEWINIT-FCPVDDTTIGPPR 117
Query: 1145 INMKPINDASLRVGIGAPK---ESEDKSVNQLY-PLIYEVIFRENTSDTERDVLEKRTDF 1312
+ ++ + + SL V AP+ E E ++ +Y Y V + +N SD E+ + + DF
Sbjct: 118 MQVEALAN-SLHVRFFAPRIENEPEPWTMRNIYNSWTYHVRYWKNGSD-EKFSISGQYDF 175
Query: 1313 TF-SNLKPLTVYCVKARALIENDRWNRSSVFSDTVCEKTKPGSTSQAWLIAGIL-----S 1474
F NL+ T YCV+ R + +DR N++ +S+ VCE+T T+ +W++A +L +
Sbjct: 176 EFLRNLESQTTYCVQVRGFL-SDR-NKAGEWSEPVCEQTTIDETTPSWMVASVLAASVCA 233
Query: 1475 AILLFPAVFYGVKVVSRCINYVFFPSSKPPSTIDEYFAEQPLKNLLL 1615
A+LL F+ ++ V R + F P + P + E+ + LLL
Sbjct: 234 ALLLLLGCFFLLRCVYRKARHAFPPRNSLPQHLKEFMSHPHHSTLLL 280
>ref|NP_001193271.1| interleukin-20 receptor subunit alpha [Bos taurus].
Length = 558
Score = 77.8 bits (190), Expect = 3e-14
Identities = 59/228 (25%), Positives = 97/228 (42%), Gaps = 9/228 (3%)
Frame = +2
Query: 149 LGATTLMLVAGAPW--VLPAGGADLRSPENVVVSIIDDNFILKWKXXXXXXXXXXXXA-D 319
L A +L+ AP +P DL P NV I+ IL+W
Sbjct: 20 LPALLFLLLVAAPTGRAVPCASGDLPKPTNVAFISINMKNILQWNPPEGLQGMEVSYTVQ 79
Query: 320 YQITGMDNWIKLPGCQYVTSTECNFSSIKLKSVYEKIKLRIRAETGNSTSPWYEVEPFIP 499
Y I G W+ C+ ++ T C+ S+ + + +++A G + S W E F P
Sbjct: 80 YFIYGQKKWLNKSECRNISRTYCDLSA-ETSDYEHQYYAKVKAMWGTNCSKWAETGRFYP 138
Query: 500 FQEAQIGPPDVHLEAEDKAIIINLSPP------GTKNSVMWAMDSSSFVYSLVIWKNSSS 661
F E QIGPP+V L ++K+I I L+ P ++S+ S+ Y++ I+ S+
Sbjct: 139 FLETQIGPPEVALTTDEKSISIVLTAPKKWKKNPEESSISMQQIYSNLKYNVSIYNTKSN 198
Query: 662 LEERTKTVYARDKIHQLSPETTYCLKVKAGLRSPRKVGVYSPVYCINT 805
L P T YC+ V++ + P ++ S C++T
Sbjct: 199 RTWSQCVTNHTLVFSWLEPGTLYCVLVESFVPGPPRLTHPSERQCVST 246
Score = 57.4 bits (137), Expect = 5e-08
Identities = 64/288 (22%), Positives = 117/288 (40%), Gaps = 19/288 (6%)
Frame = +2
Query: 821 LPSPENLEINAENRVYVLKWN----YTYENVTFQAQWLHAFLKKIPEDHSDKWKQIPNCE 988
LP P N+ + N +L+WN V++ Q+ KK W C
Sbjct: 44 LPKPTNVAFISINMKNILQWNPPEGLQGMEVSYTVQYFIYGQKK--------WLNKSECR 95
Query: 989 NVKTTHC-VFPQNVFTKGIFFIRVQASNGNSTSLWSEEKRFNTEMQTILFPPVINMKPIN 1165
N+ T+C + + + ++ +V+A G + S W+E RF ++T + PP + + +
Sbjct: 96 NISRTYCDLSAETSDYEHQYYAKVKAMWGTNCSKWAETGRFYPFLETQIGPPEVAL-TTD 154
Query: 1166 DASLRVGIGAPK------ESEDKSVNQLYP-LIYEV-IFRENTSDTERDVLEKRTDFTFS 1321
+ S+ + + APK E S+ Q+Y L Y V I+ ++ T + T FS
Sbjct: 155 EKSISIVLTAPKKWKKNPEESSISMQQIYSNLKYNVSIYNTKSNRTWSQCVTNHT-LVFS 213
Query: 1322 NLKPLTVYCVKARALIENDRWNRSSVFSDTVCEKTKPGSTSQ------AWLIAGILSAIL 1483
L+P T+YCV + + R + S+ C T T+ W + I +
Sbjct: 214 WLEPGTLYCVLVESFVPGP--PRLTHPSERQCVSTLEDQTTALEVKIILWYVLPISVTVF 271
Query: 1484 LFPAVFYGVKVVSRCINYVFFPSSKPPSTIDEYFAEQPLKNLLLSTSE 1627
+F + Y + Y+ K P+ + + + K + T +
Sbjct: 272 IFSVMGYSM------YRYIHVGKEKHPANLVLIYGNEFDKRFFVPTEK 313
>ref|XP_002684633.1| PREDICTED: interferon gamma receptor 2 (interferon gamma transducer
1) [Bos taurus].
Length = 608
Score = 62.4 bits (150), Expect = 2e-09
Identities = 49/194 (25%), Positives = 83/194 (42%), Gaps = 12/194 (6%)
Frame = +2
Query: 209 ADLRSPENVVVSIIDDNFILKWKXXXXXXXXXXXX--ADYQITGMDNWIKLP------GC 364
A L +P N+ V + + L W+ Y+ + NW + C
Sbjct: 267 AQLPAPGNLKVHLYNAQQALSWEPVSLDSDPRPVVYQVQYKYSTSSNWYDVNKEDSKVDC 326
Query: 365 QYVTSTECNFSSIKLKSVYEK---IKLRIRAETGNSTSPWYEVEPFIPFQEAQIGPPD-V 532
+T TEC+F++ L + + I LR+RA+ G S W F ++ A IGPP+ +
Sbjct: 327 TNLTRTECDFTANSLSEGFPRRFNISLRVRAKLGGLVSAWATAPWFEHYRNATIGPPENI 386
Query: 533 HLEAEDKAIIINLSPPGTKNSVMWAMDSSSFVYSLVIWKNSSSLEERTKTVYARDKIHQL 712
+ E+ ++II LS P + + FVY + W+ + + + ++ L
Sbjct: 387 RVTPEEGSLIIRLSAPFDVPAT-----EAYFVYCVYYWEKAGAKQVTRPFRSNFITLNDL 441
Query: 713 SPETTYCLKVKAGL 754
P YC +VKA L
Sbjct: 442 KPLRVYCFQVKAEL 455
Score = 60.1 bits (144), Expect = 8e-09
Identities = 67/283 (23%), Positives = 115/283 (40%), Gaps = 19/283 (6%)
Frame = +2
Query: 821 LPSPENLEINAENRVYVLKWNYTYEN-----VTFQAQWLHAFLKKIPEDHSDKWKQIPNC 985
LP+P NL+++ N L W + V +Q Q+ ++ + + + K +C
Sbjct: 269 LPAPGNLKVHLYNAQQALSWEPVSLDSDPRPVVYQVQYKYSTSSNWYDVNKEDSKV--DC 326
Query: 986 ENVKTTHCVFPQNVFTKGI-----FFIRVQASNGNSTSLWSEEKRFNTEMQTILFPPVIN 1150
N+ T C F N ++G +RV+A G S W+ F + PP
Sbjct: 327 TNLTRTECDFTANSLSEGFPRRFNISLRVRAKLGGLVSAWATAPWFEHYRNATIGPPENI 386
Query: 1151 MKPINDASLRVGIGAPKESEDKSVNQLYPLIYEVIFRENTSDTERDVLEKRTDFTFSNLK 1330
+ SL + + AP D + Y +Y V + E + + T ++LK
Sbjct: 387 RVTPEEGSLIIRLSAPF---DVPATEAY-FVYCVYYWEKAGAKQVTRPFRSNFITLNDLK 442
Query: 1331 PLTVYC--VKARALIENDRWNRSSVFSDTVCEKTKPGST---SQAWLIAGILSAIL--LF 1489
PL VYC VKA + + +R S+ C +T ++ Q +L AG +L +
Sbjct: 443 PLRVYCFQVKAELFLTKENISRPGHLSNISCCETAADASVKLQQDFLAAGTTFLVLSVVV 502
Query: 1490 PAVFYGVKVVSRCINYVFFPSSKPPSTIDEYFAE--QPLKNLL 1612
+ + V + + F PS I+EY + QP+ + L
Sbjct: 503 GSCLFLVLRYRGLVKHWFHSPPSIPSQIEEYLKDPAQPILDAL 545
>ref|XP_592804.3| PREDICTED: interferon gamma receptor 2 (interferon gamma transducer
1) [Bos taurus].
Length = 608
Score = 62.4 bits (150), Expect = 2e-09
Identities = 49/194 (25%), Positives = 83/194 (42%), Gaps = 12/194 (6%)
Frame = +2
Query: 209 ADLRSPENVVVSIIDDNFILKWKXXXXXXXXXXXX--ADYQITGMDNWIKLP------GC 364
A L +P N+ V + + L W+ Y+ + NW + C
Sbjct: 267 AQLPAPGNLKVHLYNAQQALSWEPVSLDSDPRPVVYQVQYKYSTSSNWYDVNKEDSKVDC 326
Query: 365 QYVTSTECNFSSIKLKSVYEK---IKLRIRAETGNSTSPWYEVEPFIPFQEAQIGPPD-V 532
+T TEC+F++ L + + I LR+RA+ G S W F ++ A IGPP+ +
Sbjct: 327 TNLTRTECDFTANSLSEGFPRRFNISLRVRAKLGGLVSAWATAPWFEHYRNATIGPPENI 386
Query: 533 HLEAEDKAIIINLSPPGTKNSVMWAMDSSSFVYSLVIWKNSSSLEERTKTVYARDKIHQL 712
+ E+ ++II LS P + + FVY + W+ + + + ++ L
Sbjct: 387 RVTPEEGSLIIRLSAPFDVPAT-----EAYFVYCVYYWEKAGAKQVTRPFRSNFITLNDL 441
Query: 713 SPETTYCLKVKAGL 754
P YC +VKA L
Sbjct: 442 KPLRVYCFQVKAEL 455
Score = 60.1 bits (144), Expect = 8e-09
Identities = 67/283 (23%), Positives = 115/283 (40%), Gaps = 19/283 (6%)
Frame = +2
Query: 821 LPSPENLEINAENRVYVLKWNYTYEN-----VTFQAQWLHAFLKKIPEDHSDKWKQIPNC 985
LP+P NL+++ N L W + V +Q Q+ ++ + + + K +C
Sbjct: 269 LPAPGNLKVHLYNAQQALSWEPVSLDSDPRPVVYQVQYKYSTSSNWYDVNKEDSKV--DC 326
Query: 986 ENVKTTHCVFPQNVFTKGI-----FFIRVQASNGNSTSLWSEEKRFNTEMQTILFPPVIN 1150
N+ T C F N ++G +RV+A G S W+ F + PP
Sbjct: 327 TNLTRTECDFTANSLSEGFPRRFNISLRVRAKLGGLVSAWATAPWFEHYRNATIGPPENI 386
Query: 1151 MKPINDASLRVGIGAPKESEDKSVNQLYPLIYEVIFRENTSDTERDVLEKRTDFTFSNLK 1330
+ SL + + AP D + Y +Y V + E + + T ++LK
Sbjct: 387 RVTPEEGSLIIRLSAPF---DVPATEAY-FVYCVYYWEKAGAKQVTRPFRSNFITLNDLK 442
Query: 1331 PLTVYC--VKARALIENDRWNRSSVFSDTVCEKTKPGST---SQAWLIAGILSAIL--LF 1489
PL VYC VKA + + +R S+ C +T ++ Q +L AG +L +
Sbjct: 443 PLRVYCFQVKAELFLTKENISRPGHLSNISCCETAADASVKLQQDFLAAGTTFLVLSVVV 502
Query: 1490 PAVFYGVKVVSRCINYVFFPSSKPPSTIDEYFAE--QPLKNLL 1612
+ + V + + F PS I+EY + QP+ + L
Sbjct: 503 GSCLFLVLRYRGLVKHWFHSPPSIPSQIEEYLKDPAQPILDAL 545
>ref|XP_002690307.1| PREDICTED: interleukin 22-binding protein-like [Bos taurus].
Length = 230
Score = 50.4 bits (119), Expect = 6e-06
Identities = 44/203 (21%), Positives = 85/203 (41%), Gaps = 6/203 (2%)
Frame = +2
Query: 146 FLGATTLMLVAGAPWVLPAGGADLRSPENVVVSIIDDNFILKWKXXXXXXXXXXXX-ADY 322
FLG +L+ G PA + P+ V + + IL+W+ Y
Sbjct: 7 FLGFLLSVLLPGVVETQPAN--ESLKPQRVHFQSRNFHNILRWQPGQACLGNNSIYFVQY 64
Query: 323 QITGMDNWIKLPGCQYVTSTECNFSSIKLKSVYEKIKLRIRAETGNSTSPWYEVEPFIPF 502
++ G W C + C+ ++ + ++E R++ S W + FIP+
Sbjct: 65 KMYGERQWKNKETCWGIREFFCDLTN-ETSDIWEPYYGRVKTALAGIHSGWTMTQRFIPW 123
Query: 503 QEAQIGPPDVHLEAEDKAIIINLSPPG----TKNSVMWAMDSSSFVYSLVIWKNSSSLEE 670
E +I PP +++ + ++++NL P + +M+ VY + I+ NS E+
Sbjct: 124 WETKIDPPVMNITHVNGSLLVNLHAPNLPYRDQEGENVSMEYYELVYRVFIFNNSLEKEQ 183
Query: 671 RT-KTVYARDKIHQLSPETTYCL 736
+ + + +I SP T YC+
Sbjct: 184 KVYEGAHRVVEIKVTSPHTGYCV 206
>ref|XP_612334.4| PREDICTED: interleukin 22-binding protein [Bos taurus].
Length = 230
Score = 50.4 bits (119), Expect = 6e-06
Identities = 44/203 (21%), Positives = 85/203 (41%), Gaps = 6/203 (2%)
Frame = +2
Query: 146 FLGATTLMLVAGAPWVLPAGGADLRSPENVVVSIIDDNFILKWKXXXXXXXXXXXX-ADY 322
FLG +L+ G PA + P+ V + + IL+W+ Y
Sbjct: 7 FLGFLLSVLLPGVVETQPAN--ESLKPQRVHFQSRNFHNILRWQPGQACLGNNSIYFVQY 64
Query: 323 QITGMDNWIKLPGCQYVTSTECNFSSIKLKSVYEKIKLRIRAETGNSTSPWYEVEPFIPF 502
++ G W C + C+ ++ + ++E R++ S W + FIP+
Sbjct: 65 KMYGERQWKNKETCWGIREFFCDLTN-ETSDIWEPYYGRVKTALAGIHSGWTMTQRFIPW 123
Query: 503 QEAQIGPPDVHLEAEDKAIIINLSPPG----TKNSVMWAMDSSSFVYSLVIWKNSSSLEE 670
E +I PP +++ + ++++NL P + +M+ VY + I+ NS E+
Sbjct: 124 WETKIDPPVMNITHVNGSLLVNLHAPNLPYRDQEGENVSMEYYELVYRVFIFNNSLEKEQ 183
Query: 671 RT-KTVYARDKIHQLSPETTYCL 736
+ + + +I SP T YC+
Sbjct: 184 KVYEGAHRVVEIKVTSPHTGYCV 206
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 73,914,006
Number of extensions: 1862167
Number of successful extensions: 5929
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 5887
Number of HSP's successfully gapped: 11
Length of query: 694
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 585
Effective length of database: 14,074,782
Effective search space: 8233747470
Effective search space used: 8233747470
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Animal-Genome cDNA 20110601C-012753
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012753
(2082 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852266.1| PREDICTED: similar to interferon-alpha receptor... 723 0.0
Alignment gi|XP_535581.2| PREDICTED: similar to interleukin 10 receptor, ... 82 2e-15
Alignment gi|XP_541119.2| PREDICTED: similar to interleukin 20 receptor, ... 69 1e-11
Alignment gi|XP_853651.1| PREDICTED: similar to fibronectin type III doma... 59 1e-08
Alignment gi|XP_544863.2| PREDICTED: similar to interferon-gamma receptor... 54 8e-07
Alignment gi|XP_853473.1| PREDICTED: similar to Interleukin-10 receptor a... 52 2e-06
>ref|XP_852266.1| PREDICTED: similar to interferon-alpha receptor 1 precursor [Canis
familiaris].
Length = 569
Score = 723 bits (1866), Expect = 0.0
Identities = 359/568 (63%), Positives = 435/568 (76%), Gaps = 11/568 (1%)
Frame = +2
Query: 137 MLGFLGATTLMLVAGAPWVLPA--GGADLRSPENVVVSIIDDNFILKWKXXXXXXXXXXX 310
ML LGATT++LVAGAPW+LPA GG L+SP+NV V I+DD FIL+W
Sbjct: 1 MLTLLGATTVVLVAGAPWMLPAAAGGTTLKSPQNVEVYIVDDTFILRWNRSNPSIRNVTF 60
Query: 311 XADYQITGMDNWIKLPGCQYVTSTECNFSSIKLKSVYEKIKLRIRAETGNSTSPWYEVEP 490
A YQ G D W+KLPGCQ V +T C+FSS+KL +VY+K+KLRIRAE GN+TSPW+ ++
Sbjct: 61 SAYYQTLGNDTWLKLPGCQSVANTTCDFSSLKL-NVYDKVKLRIRAEEGNNTSPWHNIDS 119
Query: 491 FIPFQEAQIGPPDVHLEAEDKAIIINLSPPGTKNSVMWAMDSSSFVYSLVIWKNSSSLEE 670
F F++AQIGPP VHLEAEDK IIIN+S PG ++SVMWA+DSSSF YSL IWKNSSS E
Sbjct: 120 FTLFEKAQIGPPKVHLEAEDKTIIINISLPGARDSVMWALDSSSFTYSLDIWKNSSSGER 179
Query: 671 RTKTVYARDKIHQLSPETTYCLKVKAGLRSPRKVGVYSPVYCINTTVKHHLPSPENLEIN 850
RT+TVY+RDKI+ LSPETTYCLKVKA L PRK G+YSPVYCI T V + LP PEN+ ++
Sbjct: 180 RTETVYSRDKIYNLSPETTYCLKVKARLL-PRKNGIYSPVYCIKTPVANKLPPPENIRLD 238
Query: 851 AENRVYVLKWNYTY---------ENVTFQAQWLHAFLKKIPEDHSDKWKQIPNCENVKTT 1003
++N ++VL+W+Y Y NVTFQAQWL+A+LKKIP D S KWKQIP C+NV TT
Sbjct: 239 SKNNIFVLRWDYPYGSVKWGHARPNVTFQAQWLYAYLKKIPGDSSGKWKQIPGCKNVHTT 298
Query: 1004 HCVFPQNVFTKGIFFIRVQASNGNSTSLWSEEKRFNTEMQTILFPPVINMKPINDASLRV 1183
CVF QN F KGI+ IRVQAS+GN+TS+WS+E++F+ ++Q L PPVI MK ND SLRV
Sbjct: 299 QCVFLQNTFRKGIYLIRVQASDGNTTSVWSKEEKFDAQLQITLLPPVITMKSTNDVSLRV 358
Query: 1184 GIGAPKESEDKSVNQLYPLIYEVIFRENTSDTERDVLEKRTDFTFSNLKPLTVYCVKARA 1363
I AP+ESE+K VNQ +PLIYE++F ENTS+ ER + EK+TDFTFS LKPLT YCVKARA
Sbjct: 359 YISAPEESENKPVNQNFPLIYEIVFWENTSNAERKIREKKTDFTFSKLKPLTEYCVKARA 418
Query: 1364 LIENDRWNRSSVFSDTVCEKTKPGSTSQAWLIAGILSAILLFPAVFYGVKVVSRCINYVF 1543
LIE+D+WN+SS FSDTVCEKTKPG+TS+ WLIAGI +AI P V Y VK++ RCI+YVF
Sbjct: 419 LIEDDKWNKSSGFSDTVCEKTKPGNTSRTWLIAGICAAIFSIPVVIYVVKLLLRCISYVF 478
Query: 1544 FPSSKPPSTIDEYFAEQPLKNLLLSTSEEQTEICFIVXXXXXXXXXXXXXXXXXXHSRCS 1723
FPSSKPPSTIDEYF+E PL NLLL TSEEQTE CFI+ H + S
Sbjct: 479 FPSSKPPSTIDEYFSEPPLWNLLLLTSEEQTERCFIIENTNTISAVEETNQTDEDHKKYS 538
Query: 1724 SQTNRDSGVYSNEDENSGSKIGEEILRQ 1807
SQT++DSG YSNEDE+ GSK EE+L+Q
Sbjct: 539 SQTSQDSGNYSNEDESGGSKFSEELLQQ 566
>ref|XP_535581.2| PREDICTED: similar to interleukin 10 receptor, beta precursor
[Canis familiaris].
Length = 374
Score = 82.0 bits (201), Expect = 2e-15
Identities = 66/237 (27%), Positives = 101/237 (42%), Gaps = 4/237 (1%)
Frame = +2
Query: 131 RTMLGFLGATTLMLVAGAPWVLPAGGADLRSPENVVVSIIDDNFILKWKXXXXXXXXXXX 310
R++ LG LM G + P+NV + ++ IL+W+
Sbjct: 3 RSLRSLLGGCLLMSALGL----------VPPPKNVRMKSVNFKNILQWELPAFPKGTLTF 52
Query: 311 XADYQITGMDNWIKLPG-CQYVTSTECNFSSIKLKSVYEKIKLRIRAETGNSTSPWYEVE 487
A YQ ++ K C TEC+FSS+ S Y LR+RAE + S W +
Sbjct: 53 TAQYQ-----SYRKFQDLCTSTAFTECDFSSL---SKYGDHTLRVRAEFADEHSDWVNIT 104
Query: 488 PFIPFQEAQIGPPDVHLEAEDKAIIINLSPPGTKNSV-MWAMDS--SSFVYSLVIWKNSS 658
F P + IGPP + +EA ++ + P +N W M + +S+ Y++ WKN S
Sbjct: 105 -FCPVDDTMIGPPGMQVEALANSLHLRFLAPKIENEPETWTMRNIYNSWAYNVQYWKNGS 163
Query: 659 SLEERTKTVYARDKIHQLSPETTYCLKVKAGLRSPRKVGVYSPVYCINTTVKHHLPS 829
+ Y + + L P TTYC++V+ L K G +S C T PS
Sbjct: 164 DEKWPITCQYDFEVLRDLEPWTTYCVRVQGFLPERNKTGEWSKPVCEQTANDDTAPS 220
Score = 63.9 bits (154), Expect = 6e-10
Identities = 68/285 (23%), Positives = 126/285 (44%), Gaps = 11/285 (3%)
Frame = +2
Query: 794 CINTTVKHHLPSPENLEINAENRVYVLKWN---YTYENVTFQAQWLHAFLKKIPEDHSDK 964
C+ + +P P+N+ + + N +L+W + +TF AQ+ K
Sbjct: 12 CLLMSALGLVPPPKNVRMKSVNFKNILQWELPAFPKGTLTFTAQY----------QSYRK 61
Query: 965 WKQIPNCENVKTTHCVFPQNVFTKGIFFIRVQASNGNSTSLWSEEKRFNTEMQTILFPPV 1144
++ + C + T C F ++ G +RV+A + S W F T++ PP
Sbjct: 62 FQDL--CTSTAFTECDF-SSLSKYGDHTLRVRAEFADEHSDWVNIT-FCPVDDTMIGPPG 117
Query: 1145 INMKPINDASLRVGIGAPK---ESEDKSVNQLY-PLIYEVIFRENTSDTERDVLEKRTDF 1312
+ ++ + + SL + APK E E ++ +Y Y V + +N SD + + +
Sbjct: 118 MQVEALAN-SLHLRFLAPKIENEPETWTMRNIYNSWAYNVQYWKNGSDEKWPITCQYDFE 176
Query: 1313 TFSNLKPLTVYCVKARALIENDRWNRSSVFSDTVCEKTKPGSTSQAWLIAGILSAILLFP 1492
+L+P T YCV+ + + N++ +S VCE+T T+ +W +A +L+A +
Sbjct: 177 VLRDLEPWTTYCVRVQGFLPER--NKTGEWSKPVCEQTANDDTAPSWTVAIVLAASVCVA 234
Query: 1493 AVFYGVKVVSRCI----NYVFFPSSKPPSTIDEYFAEQPLKNLLL 1615
+ G + C+ +VF P + P + E F P N LL
Sbjct: 235 LLLLGCSALLWCLYKRTKHVFSPRNCLPQHLKE-FLGHPHHNTLL 278
>ref|XP_541119.2| PREDICTED: similar to interleukin 20 receptor, alpha [Canis
familiaris].
Length = 558
Score = 69.3 bits (168), Expect = 1e-11
Identities = 58/224 (25%), Positives = 95/224 (42%), Gaps = 10/224 (4%)
Frame = +2
Query: 164 LMLVAGAPW---VLPAGGADLRSPENVVVSIIDDNFILKWKXXXXXXXXXXXXA-DYQIT 331
L+L+A AP VL G L P N+ I+ IL+W Y I
Sbjct: 29 LLLLAAAPSGRAVLCISGG-LPKPTNITFLSINMKNILQWSPPEGLQGAEVTYTVQYFIY 87
Query: 332 GMDNWIKLPGCQYVTSTECNFSSIKLKSVYEKIKLRIRAETGNSTSPWYEVEPFIPFQEA 511
G W+ C+ + T C+ S ++ + +++A + S W E F PF E
Sbjct: 88 GQKKWLSKSECRNINRTCCDLS-VETSDYEHQYYAKVKAIWETNCSKWAETGRFYPFLET 146
Query: 512 QIGPPDVHLEAEDKAIIINLSPP------GTKNSVMWAMDSSSFVYSLVIWKNSSSLEER 673
QIGPP V L ++K+I I L+ P ++S+ S+ Y++ I+ S+
Sbjct: 147 QIGPPRVALTTDEKSISIVLTAPEKWKRSPEESSISMRQIYSNLKYNVSIYNTKSNRMWS 206
Query: 674 TKTVYARDKIHQLSPETTYCLKVKAGLRSPRKVGVYSPVYCINT 805
+ L P+T YC+ V++ + P ++ S C+ T
Sbjct: 207 QCVTNHTLVLVWLEPDTLYCILVESFVPGPPRLAQPSEKQCVRT 250
>ref|XP_853651.1| PREDICTED: similar to fibronectin type III domain containing 6 [Canis
familiaris].
Length = 353
Score = 59.3 bits (142), Expect = 1e-08
Identities = 66/296 (22%), Positives = 114/296 (38%), Gaps = 13/296 (4%)
Frame = +2
Query: 797 INTTVKHH-----LPSPENLEINAENRVYVLKWN-------YTYENVTFQAQWLHAFLKK 940
+ T++KH LP+P+NL + + N ++L W+ Y V +Q ++ ++
Sbjct: 65 VKTSLKHLYGVAVLPAPQNLSVQSTNMKHLLTWSPVIVPGEIIYYFVEYQGEYESLYMSH 124
Query: 941 IPEDHSDKWKQIPNCENVKTTHCVFPQNVFTKGIFFIRVQASNGNSTSLWSEEKRFNTEM 1120
I W C + C ++ + +RV+A+ G+ TS WS +
Sbjct: 125 I-------WIPSSWCSPTEGPACDITDDITATVPYNLRVRATLGSQTSAWSTLQHPFNRN 177
Query: 1121 QTILFPPVINMKPINDASLRVGIGAPKESEDKSVNQLYPLIYEVIFRENTSDTERDVLEK 1300
TIL PPV+ + + G + ED + + + RE + V+
Sbjct: 178 STILTPPVMEV-------TKDGFHLVIKLED--LGPQFEFLVAYWRREPDAKEHVKVVRS 228
Query: 1301 R-TDFTFSNLKPLTVYCVKARALIENDRWNRSSVFSDTVCEKTKPGSTSQAWLIAGILSA 1477
R ++P YCVK R ++ R S FS C K + + A +
Sbjct: 229 RGIPVHLETMEPGAAYCVKVRTFVK--AIGRHSPFSQAECVKVQGEALPLALALFAFFGF 286
Query: 1478 ILLFPAVFYGVKVVSRCINYVFFPSSKPPSTIDEYFAEQPLKNLLLSTSEEQTEIC 1645
L+ + V + R + Y P P T+ P K L+S +E+ E C
Sbjct: 287 TLMLVVMPLSVWKMGRLLRYSCCPVVVLPDTLK--ITNSPQK--LISCRKEEVEAC 338
>ref|XP_544863.2| PREDICTED: similar to interferon-gamma receptor beta chain
precursor [Canis familiaris].
Length = 363
Score = 53.5 bits (127), Expect = 8e-07
Identities = 58/246 (23%), Positives = 97/246 (39%), Gaps = 18/246 (7%)
Frame = +2
Query: 122 GRPRTMLGFLGATTLMLVAGAPWVLPAGGADLRSPENVVVSIIDDNFILKWKXXXXXXXX 301
G PR G TL +V PW + L +P N V + + +L W+
Sbjct: 34 GHPRK-----GTLTLAVV---PW---DSLSQLPAPRNPKVHLYNAERVLSWEPVSLSNDS 82
Query: 302 XXXX--ADYQITGMDNWIKLP------GCQYVTSTECNFSSIKLKSVYE---KIKLRIRA 448
Y+ W C +T+ EC+F+ + + LR+RA
Sbjct: 83 RPVVYQVQYKYASGSQWYDFSVDSIGVNCMNITTMECDFTPTSPSQEFLPHLNVSLRVRA 142
Query: 449 ETGNSTSPWYEVEPFIPFQEAQIGPPD-VHLEAEDKAIIINLSPPGTKNSVMWAMDSSSF 625
+ G+ S W V F + +GPP+ V + + +++I S P + S++F
Sbjct: 143 KVGDLVSTWVRVPWFQYLRNVTVGPPENVWVTPGEGSLVIRFSSPFDISP-----SSATF 197
Query: 626 VYSLVIWKNSSSLEERTKTVYARDKI--HQLSPETTYCLKVKAGL----RSPRKVGVYSP 787
+Y + W+ ++ K + + I + L P YCL+VKA L ++G S
Sbjct: 198 LYYVHYWEKGGI--QKVKGPFRSNSIVLNDLKPLREYCLQVKAQLVWTVSKLSRLGHLSN 255
Query: 788 VYCINT 805
V C T
Sbjct: 256 VSCYET 261
Score = 51.2 bits (121), Expect = 4e-06
Identities = 70/289 (24%), Positives = 109/289 (37%), Gaps = 25/289 (8%)
Frame = +2
Query: 821 LPSPENLEINAENRVYVLKWN-YTYEN----VTFQAQWLHAFLKKIPEDHSDKWKQIP-- 979
LP+P N +++ N VL W + N V +Q Q+ +A +W
Sbjct: 54 LPAPRNPKVHLYNAERVLSWEPVSLSNDSRPVVYQVQYKYA--------SGSQWYDFSVD 105
Query: 980 ----NCENVKTTHCVF----PQNVFTKGI-FFIRVQASNGNSTSLWSEEKRFNTEMQTIL 1132
NC N+ T C F P F + +RV+A G+ S W F +
Sbjct: 106 SIGVNCMNITTMECDFTPTSPSQEFLPHLNVSLRVRAKVGDLVSTWVRVPWFQYLRNVTV 165
Query: 1133 FPPVINMKPINDASLRVGIGAPKESEDKSVNQLYPLIYEVIFRENTSDTERDVLEKRTDF 1312
PP + SL + +P + S +Y V + E + +
Sbjct: 166 GPPENVWVTPGEGSLVIRFSSPFDISPSSAT----FLYYVHYWEKGGIQKVKGPFRSNSI 221
Query: 1313 TFSNLKPLTVYC--VKARALIENDRWNRSSVFSDTVCEKTKPGSTSQAWLI----AGILS 1474
++LKPL YC VKA+ + + +R S+ C +T +T++ I GI
Sbjct: 222 VLNDLKPLREYCLQVKAQLVWTVSKLSRLGHLSNVSCYETAADATTKLQQIIIIAVGIFL 281
Query: 1475 AIL-LFPAVFYGVKVVSRCINYVFFPSSKPPSTIDEYFAE--QPLKNLL 1612
+L L A F+ V I Y F P I+EY + QP+ L
Sbjct: 282 LLLALAGACFFLVLKYKGLIKYWFHSPPTIPLQIEEYLKDPSQPILEAL 330
>ref|XP_853473.1| PREDICTED: similar to Interleukin-10 receptor alpha chain precursor
(IL-10R-A) (IL-10R1) [Canis familiaris].
Length = 653
Score = 52.0 bits (123), Expect = 2e-06
Identities = 49/212 (23%), Positives = 83/212 (39%), Gaps = 8/212 (3%)
Frame = +2
Query: 206 GADLRSPENVVVSIIDDNFILKWKXXXXXXXXXXXXADYQITGMDNWIKLPGCQYVTSTE 385
G +L SP +V + IL W + G++ W ++P C
Sbjct: 104 GTELPSPSSVWFEAEFFSHILHWTPIPKPSNSTYYEVELLRYGLEPWKRIPSCNQTQVLF 163
Query: 386 CNFSSIKLKSVYEK-IKLRIRAETGNSTSPWYEVEPFIPFQEAQIGPPDVHLEAEDKAII 562
C+ + + L + + ++RA GN +S W E + V LE E+ I+
Sbjct: 164 CDLTMVTLDLYHNNGYRAKVRAVDGNQSSNWTLTNTRFSMDEVNLTVGSVKLEVENGIIL 223
Query: 563 INLSPPGTKNSVMWAMDSSSF----VYSLVIWKNSSSLEERTKTVYARDKIHQLSPE--- 721
+ PP + + S F Y + I K + TKTV + + LSP
Sbjct: 224 GKIQPPRPRIAPTGDTYESIFQHFREYKIEIRKVPGNY-TFTKTV--KHENFSLSPPGKL 280
Query: 722 TTYCLKVKAGLRSPRKVGVYSPVYCINTTVKH 817
+C+KVK + S G++S C+ T ++
Sbjct: 281 GNFCVKVKPSVSSRMNNGIWSKEECVVLTYQY 312
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 77,147,037
Number of extensions: 1924841
Number of successful extensions: 6420
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6387
Number of HSP's successfully gapped: 8
Length of query: 694
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 584
Effective length of database: 15,207,544
Effective search space: 8881205696
Effective search space used: 8881205696
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012753
(2082 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_998937.1| interferon alpha/beta receptor 1 precursor [Sus... 1064 0.0
Alignment gi|NP_998936.1| interleukin-10 receptor subunit beta [Sus scrof... 78 2e-14
Alignment gi|NP_001104728.1| interferon gamma receptor 2 [Sus scrofa]. 64 3e-10
Alignment gi|XP_003358614.1| PREDICTED: interleukin-20 receptor subunit b... 55 2e-07
Alignment gi|NP_001171378.1| interferon gamma receptor 1 [Sus scrofa]. 55 2e-07
>ref|NP_998937.1| interferon alpha/beta receptor 1 precursor [Sus scrofa].
Length = 560
Score = 1064 bits (2751), Expect = 0.0
Identities = 528/560 (94%), Positives = 528/560 (94%)
Frame = +2
Query: 137 MLGFLGATTLMLVAGAPWVLPAGGADLRSPENVVVSIIDDNFILKWKXXXXXXXXXXXXA 316
MLG LGATTLMLVAGAPWVLPAGGADLRSPENVVVSIIDDNFILKWK A
Sbjct: 1 MLGLLGATTLMLVAGAPWVLPAGGADLRSPENVVVSIIDDNFILKWKSSSESVSNVTFSA 60
Query: 317 DYQITGMDNWIKLPGCQYVTSTECNFSSIKLKSVYEKIKLRIRAETGNSTSPWYEVEPFI 496
DYQITGMDNWIKLPGCQYVTSTECNFSSIKLKSVYEK KLRIRAETGNSTSPWYEVEPFI
Sbjct: 61 DYQITGMDNWIKLPGCQYVTSTECNFSSIKLKSVYEKTKLRIRAETGNSTSPWYEVEPFI 120
Query: 497 PFQEAQIGPPDVHLEAEDKAIIINLSPPGTKNSVMWAMDSSSFVYSLVIWKNSSSLEERT 676
PFQEAQIGPPDVHLEAEDKAIIINLSPPGTKNSVMWAMDSSSFVYSLVIWKNSSSLEERT
Sbjct: 121 PFQEAQIGPPDVHLEAEDKAIIINLSPPGTKNSVMWAMDSSSFVYSLVIWKNSSSLEERT 180
Query: 677 KTVYARDKIHQLSPETTYCLKVKAGLRSPRKVGVYSPVYCINTTVKHHLPSPENLEINAE 856
KTVYARDKIHQLSPETTYCLKVKAGLRSPRKVGVYSPVYCINTTVKHHLPSPENLEINAE
Sbjct: 181 KTVYARDKIHQLSPETTYCLKVKAGLRSPRKVGVYSPVYCINTTVKHHLPSPENLEINAE 240
Query: 857 NRVYVLKWNYTYENVTFQAQWLHAFLKKIPEDHSDKWKQIPNCENVKTTHCVFPQNVFTK 1036
NRVYVLKWNYTYENVTFQAQWLHAFLKKIPEDHSDKWKQIPNCENVKTTHCVFPQNVFTK
Sbjct: 241 NRVYVLKWNYTYENVTFQAQWLHAFLKKIPEDHSDKWKQIPNCENVKTTHCVFPQNVFTK 300
Query: 1037 GIFFIRVQASNGNSTSLWSEEKRFNTEMQTILFPPVINMKPINDASLRVGIGAPKESEDK 1216
GIFFIRVQASNGNSTSLWSEEKRFNTEMQTILFPPVINMKPINDASLRVGIGAPKESEDK
Sbjct: 301 GIFFIRVQASNGNSTSLWSEEKRFNTEMQTILFPPVINMKPINDASLRVGIGAPKESEDK 360
Query: 1217 SVNQLYPLIYEVIFRENTSDTERDVLEKRTDFTFSNLKPLTVYCVKARALIENDRWNRSS 1396
SVNQLYPLIYEVIFRENTSDTERDVLEKRTDFTFSNLKPLTVYCVKARALIENDRWNRSS
Sbjct: 361 SVNQLYPLIYEVIFRENTSDTERDVLEKRTDFTFSNLKPLTVYCVKARALIENDRWNRSS 420
Query: 1397 VFSDTVCEKTKPGSTSQAWLIAGILSAILLFPAVFYGVKVVSRCINYVFFPSSKPPSTID 1576
VFSDTVCEKTKPGSTSQAWLIAGILSAILLFPAVFYGVKVVSRCINYVFFPSSKPPSTID
Sbjct: 421 VFSDTVCEKTKPGSTSQAWLIAGILSAILLFPAVFYGVKVVSRCINYVFFPSSKPPSTID 480
Query: 1577 EYFAEQPLKNLLLSTSEEQTEICFIVXXXXXXXXXXXXXXXXXXHSRCSSQTNRDSGVYS 1756
EYFAEQPLKNLLLSTSEEQTEICFIV HSRCSSQTNRDSGVYS
Sbjct: 481 EYFAEQPLKNLLLSTSEEQTEICFIVENTNTITTIEETDQIDDNHSRCSSQTNRDSGVYS 540
Query: 1757 NEDENSGSKIGEEILRQAAV 1816
NEDENSGSKIGEEILRQAAV
Sbjct: 541 NEDENSGSKIGEEILRQAAV 560
>ref|NP_998936.1| interleukin-10 receptor subunit beta [Sus scrofa].
Length = 362
Score = 78.2 bits (191), Expect = 2e-14
Identities = 65/236 (27%), Positives = 102/236 (43%), Gaps = 3/236 (1%)
Frame = +2
Query: 131 RTMLGFLGATTLMLVAGAPWVLPAGGADLRSPENVVVSIIDDNFILKWKXXXXXXXXXXX 310
R++ +LG +LV+ V+P PENV ++ ++ IL+W
Sbjct: 3 RSLRNWLGGC--LLVSALGMVVPP-------PENVRMNSVNFKNILQWDSPAFPQGDLTF 53
Query: 311 XADYQITGMDNWIKLPGCQYVTSTECNFSSIKLKSVYEKIKLRIRAETGNSTSPWYEVEP 490
A Y C + TEC+FSS+ S Y LR+RAE + S W +
Sbjct: 54 TAQYHSYRQFQ----DQCVSIILTECDFSSL---SKYGDHILRVRAEFADEHSDWINIT- 105
Query: 491 FIPFQEAQIGPPDVHLEAEDKAIIINLSPPGTKNSV-MWAMDS--SSFVYSLVIWKNSSS 661
F P + IGPP + +EA ++ + P +N W + + +S+ Y + WKN S
Sbjct: 106 FCPVDDTIIGPPGMQVEALANSLHMRFLAPKIENEPETWTVRNIYNSWAYHVQYWKNGSD 165
Query: 662 LEERTKTVYARDKIHQLSPETTYCLKVKAGLRSPRKVGVYSPVYCINTTVKHHLPS 829
+ Y + + L TTYC++V+A L K G +S C TT P+
Sbjct: 166 EKFAVTAQYDFEVLRNLESSTTYCVQVRAFLPDRNKTGEWSDPVCGQTTNDETTPT 221
Score = 77.4 bits (189), Expect = 3e-14
Identities = 79/278 (28%), Positives = 133/278 (47%), Gaps = 13/278 (4%)
Frame = +2
Query: 821 LPSPENLEINAENRVYVLKWN---YTYENVTFQAQWLHAFLKKIPEDHSDKWKQIPNCEN 991
+P PEN+ +N+ N +L+W+ + ++TF AQ+ HS + Q C +
Sbjct: 22 VPPPENVRMNSVNFKNILQWDSPAFPQGDLTFTAQY-----------HSYRQFQ-DQCVS 69
Query: 992 VKTTHCVFPQNVFTKGIFFIRVQASNGNSTSLWSEEKRFNTEMQTILFPPVINMKPINDA 1171
+ T C F ++ G +RV+A + S W F TI+ PP + ++ + +
Sbjct: 70 IILTECDF-SSLSKYGDHILRVRAEFADEHSDWINIT-FCPVDDTIIGPPGMQVEALAN- 126
Query: 1172 SLRVGIGAPK---ESEDKSVNQLY-PLIYEVIFRENTSDTERDVLEKRTDF-TFSNLKPL 1336
SL + APK E E +V +Y Y V + +N SD E+ + + DF NL+
Sbjct: 127 SLHMRFLAPKIENEPETWTVRNIYNSWAYHVQYWKNGSD-EKFAVTAQYDFEVLRNLESS 185
Query: 1337 TVYCVKARALIENDRWNRSSVFSDTVCEKTKPGSTSQAWLIAGILSA-ILLFPAVFYGVK 1513
T YCV+ RA + DR N++ +SD VC +T T+ W++A +L+A ++ + G
Sbjct: 186 TTYCVQVRAFLP-DR-NKTGEWSDPVCGQTTNDETTPTWIVACVLAASVVAAFLLLLGCF 243
Query: 1514 VVSRCI----NYVFFPSSKPPSTIDEYFAEQPLKNLLL 1615
++ RCI F P + P + E+ + LLL
Sbjct: 244 ILLRCIYKKTKNAFPPRNSLPQHLKEFLSHPHHSTLLL 281
>ref|NP_001104728.1| interferon gamma receptor 2 [Sus scrofa].
Length = 369
Score = 63.9 bits (154), Expect = 3e-10
Identities = 73/298 (24%), Positives = 119/298 (39%), Gaps = 25/298 (8%)
Frame = +2
Query: 821 LPSPENLEINAENRVYVLKWN-YTYEN----VTFQAQWLHAFLKKIPEDHSDKWKQIP-- 979
LP P+NL++ N L W+ T N V +Q Q+ ++ S W +
Sbjct: 34 LPPPQNLKVRLYNAQQALSWDPVTLSNDTRPVVYQVQYRYST--------SHNWYDVNKR 85
Query: 980 ----NCENVKTTHCVFPQNVFTKGI-----FFIRVQASNGNSTSLWSEEKRFNTEMQTIL 1132
+C N+ T C F N +KG +RV+A G+ S W F +
Sbjct: 86 DISVDCTNLSRTECDFTANSLSKGFPRQFNISLRVRAKVGDRVSPWVTAPWFEHYRNATI 145
Query: 1133 FPPVINMKPINDASLRVGIGAPKESEDKSVNQLYPLIYEVIFRENTSDTERDVLEKRTDF 1312
PP + SL + +P D + + Y V +RE + +
Sbjct: 146 GPPENIWVTPEEGSLIIRFSSPF---DVPASVAF-FSYYVYYREMAGIQQVTQPFRNNFI 201
Query: 1313 TFSNLKPLTVYC--VKARALIENDRWNRSSVFSDTVCEKTKPGSTS---QAWLIA--GIL 1471
T ++LKPL VYC VKA + + +RS S+ C +T +++ Q LIA L
Sbjct: 202 TLNDLKPLRVYCFQVKAELFLVKENISRSGHLSNISCSETTADASTKLQQVILIAVGTFL 261
Query: 1472 SAILLFPAVFYGVKVVSRCINYVFFPSSKPPSTIDEYFAE--QPLKNLLLSTSEEQTE 1639
+++ A + V + Y F + P I+EY + QP+ + L S + +
Sbjct: 262 LLLVVVGACLFLVLKFRGLVKYWFHSPPRIPVQIEEYLKDPAQPILDALDKDSSSRDD 319
Score = 58.5 bits (140), Expect = 1e-08
Identities = 52/215 (24%), Positives = 92/215 (42%), Gaps = 17/215 (7%)
Frame = +2
Query: 215 LRSPENVVVSIIDDNFILKWKXXXXXXXXXXXX--ADYQITGMDNWIKLP------GCQY 370
L P+N+ V + + L W Y+ + NW + C
Sbjct: 34 LPPPQNLKVRLYNAQQALSWDPVTLSNDTRPVVYQVQYRYSTSHNWYDVNKRDISVDCTN 93
Query: 371 VTSTECNFSSIKLKSVYEK---IKLRIRAETGNSTSPWYEVEPFIPFQEAQIGPPD-VHL 538
++ TEC+F++ L + + I LR+RA+ G+ SPW F ++ A IGPP+ + +
Sbjct: 94 LSRTECDFTANSLSKGFPRQFNISLRVRAKVGDRVSPWVTAPWFEHYRNATIGPPENIWV 153
Query: 539 EAEDKAIIINLSPPGTKNSVMWAMDSSSFVYSLVIWKNSSSLEERTKTVYAR-DKIHQLS 715
E+ ++II S P + S +F V ++ + +++ T+ ++ L
Sbjct: 154 TPEEGSLIIRFSSPFDVPA------SVAFFSYYVYYREMAGIQQVTQPFRNNFITLNDLK 207
Query: 716 PETTYCLKVKAGL----RSPRKVGVYSPVYCINTT 808
P YC +VKA L + + G S + C TT
Sbjct: 208 PLRVYCFQVKAELFLVKENISRSGHLSNISCSETT 242
>ref|XP_003358614.1| PREDICTED: interleukin-20 receptor subunit beta-like [Sus scrofa].
Length = 304
Score = 55.1 bits (131), Expect = 2e-07
Identities = 44/213 (20%), Positives = 80/213 (37%), Gaps = 8/213 (3%)
Frame = +2
Query: 185 PWVLPAGGADLRSPENVVVSIIDDNFILKWKXXXXXXXXXXXXADYQ-----ITGMDNWI 349
P +L G A L +P+N+ V + +L W +YQ + WI
Sbjct: 19 PCLLTDGVAVLPAPQNISVQSTNMKHVLTWSPVMVPEEIVYYSVEYQGEYESLYMSHIWI 78
Query: 350 KLPGCQYVTSTECNFSSIKLKSVYEKIKLRIRAETGNSTSPWYEVEPFIPFQEAQIGPPD 529
C T EC+ + +V LR+RA G+ TS W ++ + PP
Sbjct: 79 PSNWCSPTTGLECDITDDITATV--PYNLRVRATLGSQTSAWSTLKHPFNRNSTTLIPPG 136
Query: 530 VHLEAEDKAIIINLSPPGTKNSVMWAMDSSSFVYSLVIWKNSSSLEERTKTVYARD---K 700
+ + + ++I L G + F + + W+ +E K V
Sbjct: 137 MEVTKDGFHLVIKLEDLGPQ-----------FEFFVAYWRREPGAKEHVKVVRPGGIPMH 185
Query: 701 IHQLSPETTYCLKVKAGLRSPRKVGVYSPVYCI 799
+ + P TYC+K + +++ + +S C+
Sbjct: 186 LETMEPGATYCVKARTFVKAIGRYSAFSQAECV 218
>ref|NP_001171378.1| interferon gamma receptor 1 [Sus scrofa].
Length = 470
Score = 55.1 bits (131), Expect = 2e-07
Identities = 52/239 (21%), Positives = 94/239 (39%), Gaps = 16/239 (6%)
Frame = +2
Query: 821 LPSPENLEINAENRVYVLKWNYTYENVTFQAQWLHAFLKKIPEDHSDKWKQIPNCENVKT 1000
+P+P NL+I A N ++ W+Y W F ++ W I C
Sbjct: 29 VPTPTNLKIEAYNWNTIVSWDYP------PTLWSPVFTAQVKTYEDATW--IDACNTSDH 80
Query: 1001 THCVFPQNVFTKGIFFIRVQASNGNSTSLWSEEKRFNTEMQTILFPPVINMKPIND---- 1168
+ +FP + RV+A G S ++E K F Q PP + ++ D
Sbjct: 81 SCNIFPTMYSPSDPLWARVKARLGQQESAYAESKEFILCQQGKFGPPKLGIRKKEDQIIV 140
Query: 1169 ----ASLRVGIGAPKESEDKSVNQLYPLIYEVIFRENTSDTERDVLEKRTDFTFSNLKPL 1336
+ P +D N Y Y+V R N S+T + K D L
Sbjct: 141 DIFHPLITTNGNVPAVVDDDDDNNCYTFTYKVFVRINGSETTDKMYIKNEDDCNETQCFL 200
Query: 1337 TV--------YCVKARALIENDRWNRSSVFSDTVCEKTKPGSTSQAWLIAGILSAILLF 1489
++ YC+ A + +D W+ ++ S+ +C + ++++ + I++A++LF
Sbjct: 201 SIPVSSLNSEYCISAEGV--SDVWDVTTEKSEEICITSFDSASTENSVWIPIVTALVLF 257
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 47,436,139
Number of extensions: 1189136
Number of successful extensions: 3783
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3755
Number of HSP's successfully gapped: 7
Length of query: 694
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 588
Effective length of database: 8,704,850
Effective search space: 5118451800
Effective search space used: 5118451800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012753
(2082 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034638.2| interferon alpha/beta receptor 1 precursor [Mus... 469 e-132
Alignment gi|NP_032375.2| interleukin-10 receptor subunit beta [Mus muscu... 81 4e-15
Alignment gi|NP_032364.1| interferon gamma receptor 2 [Mus musculus]. 76 9e-14
Alignment gi|NP_766374.1| interleukin-20 receptor subunit alpha precursor... 69 2e-11
Alignment gi|NP_001028715.2| interleukin 20 receptor beta precursor [Mus ... 68 2e-11
>ref|NP_034638.2| interferon alpha/beta receptor 1 precursor [Mus musculus].
Length = 590
Score = 469 bits (1207), Expect = e-132
Identities = 257/562 (45%), Positives = 354/562 (62%), Gaps = 4/562 (0%)
Frame = +2
Query: 137 MLGFLGATTLMLVAGAPWVLP--AGGADLRSPENVVVSIIDDNFILKWKXXXXXXXXXXX 310
ML +GA L+LVAGAPWVLP AGG +L+ PEN+ V IIDDN+ LKW
Sbjct: 1 MLAVVGAAALVLVAGAPWVLPSAAGGENLKPPENIDVYIIDDNYTLKWSSHGESMGSVTF 60
Query: 311 XADYQITGMDNWIKLPGCQYVTSTECNFSSIKLKSVYEKIKLRIRAETGNSTSPWYEVEP 490
A+Y+ W+K+P CQ+ T+T+C FS + +VY K + R+RAE GNSTS W EV+P
Sbjct: 61 SAEYRTKDEAKWLKVPECQHTTTTKCEFSLLDT-NVYIKTQFRVRAEEGNSTSSWNEVDP 119
Query: 491 FIPFQEAQIGPPDVHLEAEDKAIIINLSPPGTKNSVMWAMDSSSFVYSLVIWKNSSSLEE 670
FIPF A + PP+V LEAEDKAI++++SPPG + MWA++ SF Y++ IW+ SSS ++
Sbjct: 120 FIPFYTAHMSPPEVRLEAEDKAILVHISPPGQDGN-MWALEKPSFSYTIRIWQKSSSDKK 178
Query: 671 RTKTVYARDKIHQLSPETTYCLKVKAGLRSPRKVGVYSPVYCINTTVKHHLPSPENLEIN 850
+ Y +KI +L PETTYCL+VKA S +K YS V CI+TTV + +P P NL+++
Sbjct: 179 TINSTYYVEKIPELLPETTYCLEVKAIHPSLKKHSNYSTVQCISTTVANKMPVPGNLQVD 238
Query: 851 AENRVYVLKWNYTYE-NVTFQAQWLHAFLKKIPEDHSDKWKQIPNCENVKTTHCVFPQNV 1027
A+ + YVLKW+Y +V F+AQWL + K SDKWK IP C NV+TTHCVF Q+
Sbjct: 239 AQGKSYVLKWDYIASADVLFRAQWLPGYSKSSSGSRSDKWKPIPTCANVQTTHCVFSQDT 298
Query: 1028 FTKGIFFIRVQASNGNSTSLWSEEKRFNTEMQTILFPPVINMKPINDASLRVGIGAPKES 1207
G FF+ VQAS GN TS WSEEK +++ + PPVI + ++D +L V + +
Sbjct: 299 VYTGTFFLHVQASEGNHTSFWSEEKFIDSQKHILPPPPVITVTAMSD-TLLVYVNCQDST 357
Query: 1208 EDKSVNQLYPLIYEVIFRENTSDTERDVLEKRTDFTFSNLKPLTVYCVKARALIENDRWN 1387
D L YE+IF ENTS+T+ + + +FT NL+PLTVYCV+AR L N
Sbjct: 358 CD-------GLNYEIIFWENTSNTKISMEKDGPEFTLKNLQPLTVYCVQARVLF-RALLN 409
Query: 1388 RSSVFSDTVCEKTKPGSTSQAWLIAGILSAILLFPAVFYGVKVVSRCINYVFFPSSKPPS 1567
++S FS+ +CEKT+PGS S W+I G L + V Y ++ V + + +V FP KPP
Sbjct: 410 KTSNFSEKLCEKTRPGSFSTIWIITG-LGVVFFSVMVLYALRSVWKYLCHVCFPPLKPPR 468
Query: 1568 TIDEYFAEQPLKNLLLSTSEEQTEICFIVXXXXXXXXXXXXXXXXXXHSRCSSQTNRDSG 1747
+IDE+F+E P KNL+L T+EE TE CFI+ + SSQT++DSG
Sbjct: 469 SIDEFFSEPPSKNLVLLTAEEHTERCFIIENTDTVAVEVKHAPEEDLR-KYSSQTSQDSG 527
Query: 1748 VYSNEDENS-GSKIGEEILRQA 1810
YSNE+E S G++ G+ +L +A
Sbjct: 528 NYSNEEEESVGTESGQAVLSKA 549
>ref|NP_032375.2| interleukin-10 receptor subunit beta [Mus musculus].
Length = 351
Score = 80.9 bits (198), Expect = 4e-15
Identities = 58/218 (26%), Positives = 104/218 (47%), Gaps = 5/218 (2%)
Frame = +2
Query: 191 VLPAGGADLRSPENVVVSIIDDNFILKWKXXXXXXXXXXXXADYQI--TGMDNWIKLPGC 364
++PA G + PE V ++ ++ IL+W+ A Y+ + D+ C
Sbjct: 16 LVPALGM-IPPPEKVRMNSVNFKNILQWEVPAFPKTNLTFTAQYESYRSFQDH------C 68
Query: 365 QYVTSTECNFSSIKLKSVYEKIKLRIRAETGNSTSPWYEVEPFIPFQEAQIGPPDVHLEA 544
+ ST+C+FS + S Y +R+RAE + S W V F P ++ IGPP++ +E+
Sbjct: 69 KRTASTQCDFSHL---SKYGDYTVRVRAELADEHSEWVNVT-FCPVEDTIIGPPEMQIES 124
Query: 545 EDKAIIINLSPPGTKNSV-MWAMDS--SSFVYSLVIWKNSSSLEERTKTVYARDKIHQLS 715
+++ + S P +N W + + S+ Y + WKN ++ + + + Y + + L
Sbjct: 125 LAESLHLRFSAPQIENEPETWTLKNIYDSWAYRVQYWKNGTNEKFQVVSPYDSEVLRNLE 184
Query: 716 PETTYCLKVKAGLRSPRKVGVYSPVYCINTTVKHHLPS 829
P TTYC++V+ L + G +S C T PS
Sbjct: 185 PWTTYCIQVQGFLLDQNRTGEWSEPICERTGNDEITPS 222
Score = 70.1 bits (170), Expect = 6e-12
Identities = 59/236 (25%), Positives = 112/236 (47%), Gaps = 9/236 (3%)
Frame = +2
Query: 821 LPSPENLEINAENRVYVLKWN---YTYENVTFQAQW--LHAFLKKIPEDHSDKWKQIPNC 985
+P PE + +N+ N +L+W + N+TF AQ+ +F +DH C
Sbjct: 23 IPPPEKVRMNSVNFKNILQWEVPAFPKTNLTFTAQYESYRSF-----QDH---------C 68
Query: 986 ENVKTTHCVFPQNVFTKGIFFIRVQASNGNSTSLWSEEKRFNTEMQTILFPPVINMKPIN 1165
+ +T C F ++ G + +RV+A + S W E TI+ PP + ++ +
Sbjct: 69 KRTASTQCDF-SHLSKYGDYTVRVRAELADEHSEWVNVTFCPVE-DTIIGPPEMQIESLA 126
Query: 1166 DASLRVGIGAPK---ESEDKSVNQLYPL-IYEVIFRENTSDTERDVLEKRTDFTFSNLKP 1333
+ SL + AP+ E E ++ +Y Y V + +N ++ + V+ NL+P
Sbjct: 127 E-SLHLRFSAPQIENEPETWTLKNIYDSWAYRVQYWKNGTNEKFQVVSPYDSEVLRNLEP 185
Query: 1334 LTVYCVKARALIENDRWNRSSVFSDTVCEKTKPGSTSQAWLIAGILSAILLFPAVF 1501
T YC++ + + + NR+ +S+ +CE+T + +W++A IL +L +F
Sbjct: 186 WTTYCIQVQGFLLDQ--NRTGEWSEPICERTGNDEITPSWIVAIILIVSVLVVFLF 239
>ref|NP_032364.1| interferon gamma receptor 2 [Mus musculus].
Length = 332
Score = 76.3 bits (186), Expect = 9e-14
Identities = 60/228 (26%), Positives = 105/228 (46%), Gaps = 13/228 (5%)
Frame = +2
Query: 164 LMLVAGAPWVLPAGGADLRSPENVVVSIIDDNFILKWKXXXXXXXXXXXXADYQITGMD- 340
L+ GA P + L +P N + + +D IL W+ + + +D
Sbjct: 12 LLCGLGAAASSPDSFSQLAAPLNPRLHLYNDEQILTWEPSPSSNDPRPVVYQVEYSFIDG 71
Query: 341 NWIKL--PGCQYVTSTECNFSS---IKLKSVYEKIKLRIRAETGNSTSPWYEVEPFIPFQ 505
+W +L P C +T T+C+ + +KL + LR+RA+ GN TS W +EPF ++
Sbjct: 72 SWHRLLEPNCTDITETKCDLTGGGRLKLFPHPFTVFLRVRAKRGNLTSKWVGLEPFQHYE 131
Query: 506 EAQIGPP-DVHLEAEDKAIIINLSPPGTKNSVMWAMDSSSFVYSLVIWKNSSSLEERTKT 682
+GPP ++ + +++I+ SPP ++F Y + W+ S + +E+ +
Sbjct: 132 NVTVGPPKNISVTPGKGSLVIHFSPP------FDVFHGATFQYLVHYWEKSETQQEQVEG 185
Query: 683 VYARDKI--HQLSPETTYCLKVKAGL----RSPRKVGVYSPVYCINTT 808
+ + I L P YCL+ +A L + R G+ S V C TT
Sbjct: 186 PFKSNSIVLGNLKPYRVYCLQTEAQLILKNKKIRPHGLLSNVSCHETT 233
Score = 50.4 bits (119), Expect = 5e-06
Identities = 69/284 (24%), Positives = 122/284 (42%), Gaps = 27/284 (9%)
Frame = +2
Query: 821 LPSPENLEINAENRVYVLKWNYTYEN-----VTFQAQWLHAFLKKIPEDHSDKWKQI--P 979
L +P N ++ N +L W + + V +Q ++ +F+ W ++ P
Sbjct: 29 LAAPLNPRLHLYNDEQILTWEPSPSSNDPRPVVYQVEY--SFI-------DGSWHRLLEP 79
Query: 980 NCENVKTTHC---------VFPQNVFTKGIFFIRVQASNGNSTSLWSEEKRF-NTEMQTI 1129
NC ++ T C +FP + FT F+RV+A GN TS W + F + E T+
Sbjct: 80 NCTDITETKCDLTGGGRLKLFP-HPFT---VFLRVRAKRGNLTSKWVGLEPFQHYENVTV 135
Query: 1130 LFPPVINMKPINDASLRVGIGAPKESEDKSVNQLYPLIYEVIFRENTSDTERDVLE---K 1300
P I++ P SL + P + + Q Y V + E S+T+++ +E K
Sbjct: 136 GPPKNISVTP-GKGSLVIHFSPPFDVFHGATFQ-----YLVHYWEK-SETQQEQVEGPFK 188
Query: 1301 RTDFTFSNLKPLTVYCV--KARALIENDRWNRSSVFSDTVCEKTKPGSTSQAWLI----A 1462
NLKP VYC+ +A+ +++N + + S+ C +T ++++ +
Sbjct: 189 SNSIVLGNLKPYRVYCLQTEAQLILKNKKIRPHGLLSNVSCHETTANASARLQQVILIPL 248
Query: 1463 GILSAIL-LFPAVFYGVKVVSRCINYVFFPSSKPPSTIDEYFAE 1591
GI + +L L A F + Y F P I+EY +
Sbjct: 249 GIFALLLGLTGACFTLFLKYQSRVKYWFQAPPNIPEQIEEYLKD 292
>ref|NP_766374.1| interleukin-20 receptor subunit alpha precursor [Mus musculus].
Length = 546
Score = 68.6 bits (166), Expect = 2e-11
Identities = 52/223 (23%), Positives = 90/223 (40%), Gaps = 7/223 (3%)
Frame = +2
Query: 158 TTLMLVAGAPWVLPAGGADLRSPENVVVSIIDDNFILKWKXXXXXXXXXXXXA-DYQITG 334
T L+L+A + +P L P N+ I+ +L W Y I G
Sbjct: 21 TLLLLLAASGRAVPCVFCGLPKPTNITFLSINMKNVLHWNPPESLHGVEVTYTVQYFIYG 80
Query: 335 MDNWIKLPGCQYVTSTECNFSSIKLKSVYEKIKLRIRAETGNSTSPWYEVEPFIPFQEAQ 514
W+ C + T C+ S ++ + +++A S W E E F PF E Q
Sbjct: 81 QKKWLNASKCGSINRTYCDLS-VETSDYEHQFYAKVKAIWEARCSEWAETERFYPFLETQ 139
Query: 515 IGPPDVHLEAEDKAIIINLSPP------GTKNSVMWAMDSSSFVYSLVIWKNSSSLEERT 676
+ PP+V L +K+I I L+ P ++V + Y++ ++ S
Sbjct: 140 VSPPEVALTTGEKSISIALTAPEKWKRNPQDHTVSMQQIYPNLKYNVSVYNTKSRRTWSQ 199
Query: 677 KTVYARDKIHQLSPETTYCLKVKAGLRSPRKVGVYSPVYCINT 805
+ + L P T YC+ V++ + P ++ + S CI+T
Sbjct: 200 CVTNSTLVLSWLEPNTLYCVHVESLVPGPPRLPMPSQKQCIST 242
Score = 54.3 bits (129), Expect = 4e-07
Identities = 61/264 (23%), Positives = 103/264 (39%), Gaps = 13/264 (4%)
Frame = +2
Query: 821 LPSPENLEINAENRVYVLKWNYTYE----NVTFQAQWLHAFLKKIPEDHSDKWKQIPNCE 988
LP P N+ + N VL WN VT+ Q+ KK W C
Sbjct: 40 LPKPTNITFLSINMKNVLHWNPPESLHGVEVTYTVQYFIYGQKK--------WLNASKCG 91
Query: 989 NVKTTHC-VFPQNVFTKGIFFIRVQASNGNSTSLWSEEKRFNTEMQTILFPPVINMKPIN 1165
++ T+C + + + F+ +V+A S W+E +RF ++T + PP + +
Sbjct: 92 SINRTYCDLSVETSDYEHQFYAKVKAIWEARCSEWAETERFYPFLETQVSPPEVAL-TTG 150
Query: 1166 DASLRVGIGAPK------ESEDKSVNQLYP-LIYEVIFRENTSDTERDVLEKRTDFTFSN 1324
+ S+ + + AP+ + S+ Q+YP L Y V S + S
Sbjct: 151 EKSISIALTAPEKWKRNPQDHTVSMQQIYPNLKYNVSVYNTKSRRTWSQCVTNSTLVLSW 210
Query: 1325 LKPLTVYCVKARALIENDRWNRSSVFSDTVCEKTKPGSTSQAWLIAGILSAILLFPAVFY 1504
L+P T+YCV +L+ R + S C T TS AW I + L + +
Sbjct: 211 LEPNTLYCVHVESLVPGP--PRLPMPSQKQCISTLEVQTS-AWKAKVIFWYVFLTSVIVF 267
Query: 1505 GVKVVSRCI-NYVFFPSSKPPSTI 1573
+ + Y+ K P+ +
Sbjct: 268 LFSAIGYLVYRYIHVGKEKHPANL 291
>ref|NP_001028715.2| interleukin 20 receptor beta precursor [Mus musculus].
Length = 308
Score = 68.2 bits (165), Expect = 2e-11
Identities = 64/286 (22%), Positives = 117/286 (40%), Gaps = 9/286 (3%)
Frame = +2
Query: 821 LPSPENLEINAENRVYVLKWNYTYEN-------VTFQAQWLHAFLKKIPEDHSDKWKQIP 979
LP+P+NL + + N ++L WN + V +Q ++ ++ I W
Sbjct: 30 LPAPQNLSVQSTNMKHLLMWNPVTQPGETVLYCVEYQGEYESLYMSHI-------WIPSS 82
Query: 980 NCENVKTTHCVFPQNVFTKGIFFIRVQASNGNSTSLWSEEKRFNTEMQTILFPPVINMKP 1159
C K+ C ++ + RV+A G+ TS WS + T+L PP +
Sbjct: 83 QCSPTKSLECDVTDDITATVPYNFRVKAMLGSQTSAWSNLEHPFNRNATVLTPPRME--- 139
Query: 1160 INDASLRVGIGAPKESEDKSVNQLYPLIYEVIFRENTSDTERDVLEKRTDFT--FSNLKP 1333
+ + L + I E ED + ++Y +R E + + D ++P
Sbjct: 140 VTEHGLHLVI----ELEDLGPQFEFLVVY---WRREPGAAEHVKMVRSGDIPVHLETMEP 192
Query: 1334 LTVYCVKARALIENDRWNRSSVFSDTVCEKTKPGSTSQAWLIAGILSAILLFPAVFYGVK 1513
+YCVKA+AL++ R S FS C + + S A + + +L+ V V
Sbjct: 193 GAMYCVKAQALVK--AIGRHSAFSQPTCVEMQGESLPLALALFAFVGFMLILVVVLLSVW 250
Query: 1514 VVSRCINYVFFPSSKPPSTIDEYFAEQPLKNLLLSTSEEQTEICFI 1651
+ + + Y P+ P T+ + Q L+S +E+ + C +
Sbjct: 251 KMGQLLRYSCCPAVVLPDTLKITSSSQK----LISCRKEEVDACAV 292
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 64,855,954
Number of extensions: 1619564
Number of successful extensions: 5151
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5118
Number of HSP's successfully gapped: 8
Length of query: 694
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 586
Effective length of database: 12,373,671
Effective search space: 7250971206
Effective search space used: 7250971206
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012753
(2082 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000620.2| interferon alpha/beta receptor 1 precursor [Hom... 700 0.0
Alignment gi|NP_000619.3| interleukin-10 receptor subunit beta precursor ... 85 2e-16
Alignment gi|NP_055247.2| interleukin-20 receptor subunit alpha precursor... 72 2e-12
Alignment gi|NP_005525.2| interferon gamma receptor 2 precursor [Homo sap... 52 2e-06
Alignment gi|NP_443194.1| interleukin-22 receptor subunit alpha-2 isoform... 52 3e-06
Alignment gi|NP_851826.1| interleukin-22 receptor subunit alpha-2 isoform... 52 3e-06
Alignment gi|NP_001984.1| tissue factor isoform 1 precursor [Homo sapiens]. 51 5e-06
>ref|NP_000620.2| interferon alpha/beta receptor 1 precursor [Homo sapiens].
Length = 557
Score = 700 bits (1807), Expect = 0.0
Identities = 353/556 (63%), Positives = 427/556 (76%), Gaps = 2/556 (0%)
Frame = +2
Query: 137 MLGFLGATTLMLVAGAPWVLPA--GGADLRSPENVVVSIIDDNFILKWKXXXXXXXXXXX 310
M+ LGATTL+LVA APWVL A GG +L+SP+ V V IIDDNFIL+W
Sbjct: 2 MVVLLGATTLVLVAVAPWVLSAAAGGKNLKSPQKVEVDIIDDNFILRWNRSDESVGNVTF 61
Query: 311 XADYQITGMDNWIKLPGCQYVTSTECNFSSIKLKSVYEKIKLRIRAETGNSTSPWYEVEP 490
DYQ TGMDNWIKL GCQ +TST+CNFSS+KL +VYE+IKLRIRAE N TS WYEV+
Sbjct: 62 SFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKL-NVYEEIKLRIRAEKEN-TSSWYEVDS 119
Query: 491 FIPFQEAQIGPPDVHLEAEDKAIIINLSPPGTKNSVMWAMDSSSFVYSLVIWKNSSSLEE 670
F PF++AQIGPP+VHLEAEDKAI+I++SP GTK+SVMWA+D SF YSLVIWKNSS +EE
Sbjct: 120 FTPFRKAQIGPPEVHLEAEDKAIVIHISP-GTKDSVMWALDGLSFTYSLVIWKNSSGVEE 178
Query: 671 RTKTVYARDKIHQLSPETTYCLKVKAGLRSPRKVGVYSPVYCINTTVKHHLPSPENLEIN 850
R + +Y+R KI++LSPETTYCLKVKA L + K+GVYSPV+CI TTV++ LP PEN+E++
Sbjct: 179 RIENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVS 238
Query: 851 AENRVYVLKWNYTYENVTFQAQWLHAFLKKIPEDHSDKWKQIPNCENVKTTHCVFPQNVF 1030
+N+ YVLKW+YTY N+TFQ QWLHAFLK+ P +H KWKQIP+CENVKTT CVFPQNVF
Sbjct: 239 VQNQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVF 298
Query: 1031 TKGIFFIRVQASNGNSTSLWSEEKRFNTEMQTILFPPVINMKPINDASLRVGIGAPKESE 1210
KGI+ +RVQAS+GN+TS WSEE +F+TE+Q L PPV N++ ++D S + IGAPK+S
Sbjct: 299 QKGIYLLRVQASDGNNTSFWSEEIKFDTEIQAFLLPPVFNIRSLSD-SFHIYIGAPKQSG 357
Query: 1211 DKSVNQLYPLIYEVIFRENTSDTERDVLEKRTDFTFSNLKPLTVYCVKARALIENDRWNR 1390
+ V Q YPLIYE+IF ENTS+ ER ++EK+TD T NLKPLTVYCVKARA +++ N+
Sbjct: 358 NTPVIQDYPLIYEIIFWENTSNAERKIIEKKTDVTVPNLKPLTVYCVKARAHTMDEKLNK 417
Query: 1391 SSVFSDTVCEKTKPGSTSQAWLIAGILSAILLFPAVFYGVKVVSRCINYVFFPSSKPPST 1570
SSVFSD VCEKTKPG+TS+ WLI GI A+ P V Y KV RCINYVFFPS KP S+
Sbjct: 418 SSVFSDAVCEKTKPGNTSKIWLIVGICIALFALPFVIYAAKVFLRCINYVFFPSLKPSSS 477
Query: 1571 IDEYFAEQPLKNLLLSTSEEQTEICFIVXXXXXXXXXXXXXXXXXXHSRCSSQTNRDSGV 1750
IDEYF+EQPLKNLLLSTSEEQ E CFI+ H + SSQT++DSG
Sbjct: 478 IDEYFSEQPLKNLLLSTSEEQIEKCFIIENISTIATVEETNQTDEDHKKYSSQTSQDSGN 537
Query: 1751 YSNEDENSGSKIGEEI 1798
YSNEDE S SK EE+
Sbjct: 538 YSNEDE-SESKTSEEL 552
>ref|NP_000619.3| interleukin-10 receptor subunit beta precursor [Homo sapiens].
Length = 325
Score = 85.1 bits (209), Expect = 2e-16
Identities = 60/205 (29%), Positives = 94/205 (45%), Gaps = 3/205 (1%)
Frame = +2
Query: 224 PENVVVSIIDDNFILKWKXXXXXXXXXXXXADYQITGMDNWIKLPGCQYVTSTECNFSSI 403
PENV ++ ++ IL+W+ A Y + I C T TEC+FSS+
Sbjct: 24 PENVRMNSVNFKNILQWESPAFAKGNLTFTAQY----LSYRIFQDKCMNTTLTECDFSSL 79
Query: 404 KLKSVYEKIKLRIRAETGNSTSPWYEVEPFIPFQEAQIGPPDVHLEAEDKAIIINLSPPG 583
S Y LR+RAE + S W + F P + IGPP + +E ++ + P
Sbjct: 80 ---SKYGDHTLRVRAEFADEHSDWVNIT-FCPVDDTIIGPPGMQVEVLADSLHMRFLAPK 135
Query: 584 TKNSV-MWAMDS--SSFVYSLVIWKNSSSLEERTKTVYARDKIHQLSPETTYCLKVKAGL 754
+N W M + +S+ Y++ WKN + + + Y + + L P TTYC++V+ L
Sbjct: 136 IENEYETWTMKNVYNSWTYNVQYWKNGTDEKFQITPQYDFEVLRNLEPWTTYCVQVRGFL 195
Query: 755 RSPRKVGVYSPVYCINTTVKHHLPS 829
K G +S C TT +PS
Sbjct: 196 PDRNKAGEWSEPVCEQTTHDETVPS 220
Score = 80.9 bits (198), Expect = 4e-15
Identities = 80/286 (27%), Positives = 130/286 (45%), Gaps = 12/286 (4%)
Frame = +2
Query: 794 CINTTVKHHLPSPENLEINAENRVYVLKWN---YTYENVTFQAQWLHAFLKKIPEDHSDK 964
C+ + +P PEN+ +N+ N +L+W + N+TF AQ+L +I +D
Sbjct: 12 CLLVSALGMVPPPENVRMNSVNFKNILQWESPAFAKGNLTFTAQYLSY---RIFQD---- 64
Query: 965 WKQIPNCENVKTTHCVFPQNVFTKGIFFIRVQASNGNSTSLWSEEKRFNTEMQTILFPPV 1144
C N T C F ++ G +RV+A + S W F TI+ PP
Sbjct: 65 -----KCMNTTLTECDF-SSLSKYGDHTLRVRAEFADEHSDWVNIT-FCPVDDTIIGPPG 117
Query: 1145 INMKPINDASLRVGIGAPK---ESEDKSVNQLY-PLIYEVIFRENTSDTERDVLEKRTDF 1312
+ ++ + D SL + APK E E ++ +Y Y V + +N +D + + +
Sbjct: 118 MQVEVLAD-SLHMRFLAPKIENEYETWTMKNVYNSWTYNVQYWKNGTDEKFQITPQYDFE 176
Query: 1313 TFSNLKPLTVYCVKARALIENDRWNRSSVFSDTVCEKTKPGSTSQAWLIAGILSA-ILLF 1489
NL+P T YCV+ R + DR N++ +S+ VCE+T T +W++A IL A + +
Sbjct: 177 VLRNLEPWTTYCVQVRGFLP-DR-NKAGEWSEPVCEQTTHDETVPSWMVAVILMASVFMV 234
Query: 1490 PAVFYGVKVVSRCI----NYVFFPSSKPPSTIDEYFAEQPLKNLLL 1615
G + C+ Y F P + P + E F P N LL
Sbjct: 235 CLALLGCFALLWCVYKKTKYAFSPRNSLPQHLKE-FLGHPHHNTLL 279
>ref|NP_055247.2| interleukin-20 receptor subunit alpha precursor [Homo sapiens].
Length = 553
Score = 72.4 bits (176), Expect = 2e-12
Identities = 64/241 (26%), Positives = 102/241 (42%), Gaps = 10/241 (4%)
Frame = +2
Query: 113 RAGGRPRTMLGFLGATTLMLVAGAPW--VLPAGGADLRSPENVVVSIIDDNFILKWKXXX 286
RA GRP L L+L+A APW +P L P N+ I+ +L+W
Sbjct: 2 RAPGRPALRPLPLPPLLLLLLA-APWGRAVPCVSGGLPKPANITFLSINMKNVLQWTPPE 60
Query: 287 XXXXXXXXXA-DYQITGMDNWIKLPGCQYVTSTECNFSSIKLKSVYEKIKLRIRAETGNS 463
Y I G W+ C+ + T C+ S+ + + +++A G
Sbjct: 61 GLQGVKVTYTVQYFIYGQKKWLNKSECRNINRTYCDLSA-ETSDYEHQYYAKVKAIWGTK 119
Query: 464 TSPWYEVEPFIPFQEAQIGPPDVHLEAEDKAIIINLSPPGT-KNSVMWAMDSSSFVYSLV 640
S W E F PF E QIGPP+V L ++K+I + L+ P K + S +YS +
Sbjct: 120 CSKWAESGRFYPFLETQIGPPEVALTTDEKSISVVLTAPEKWKRNPEDLPVSMQQIYSNL 179
Query: 641 IWKNSSSLEERTKTVYARDKIHQ------LSPETTYCLKVKAGLRSPRKVGVYSPVYCIN 802
+ N S L ++ +++ + L P T YC+ V++ + P + S C
Sbjct: 180 KY-NVSVLNTKSNRTWSQCVTNHTLVLTWLEPNTLYCVHVESFVPGPPRRAQPSEKQCAR 238
Query: 803 T 805
T
Sbjct: 239 T 239
Score = 54.3 bits (129), Expect = 4e-07
Identities = 59/269 (21%), Positives = 105/269 (39%), Gaps = 18/269 (6%)
Frame = +2
Query: 821 LPSPENLEINAENRVYVLKWN----YTYENVTFQAQWLHAFLKKIPEDHSDKWKQIPNCE 988
LP P N+ + N VL+W VT+ Q+ KK W C
Sbjct: 37 LPKPANITFLSINMKNVLQWTPPEGLQGVKVTYTVQYFIYGQKK--------WLNKSECR 88
Query: 989 NVKTTHC-VFPQNVFTKGIFFIRVQASNGNSTSLWSEEKRFNTEMQTILFPPVINMKPIN 1165
N+ T+C + + + ++ +V+A G S W+E RF ++T + PP + + +
Sbjct: 89 NINRTYCDLSAETSDYEHQYYAKVKAIWGTKCSKWAESGRFYPFLETQIGPPEVAL-TTD 147
Query: 1166 DASLRVGIGAPK------ESEDKSVNQLYP-LIYEVIFRENTSDTERDVLEKRTDFTFSN 1324
+ S+ V + AP+ E S+ Q+Y L Y V S+ +
Sbjct: 148 EKSISVVLTAPEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTKSNRTWSQCVTNHTLVLTW 207
Query: 1325 LKPLTVYCVKARALIENDRWNRSSVFSDTVCEKTKPGSTSQ------AWLIAGILSAILL 1486
L+P T+YCV + + R + S+ C +T +S+ W + + + L
Sbjct: 208 LEPNTLYCVHVESFVPGP--PRRAQPSEKQCARTLKDQSSEFKAKIIFWYVLPVSITVFL 265
Query: 1487 FPAVFYGVKVVSRCINYVFFPSSKPPSTI 1573
F + Y + Y+ K P+ +
Sbjct: 266 FSVMGYSI------YRYIHVGKEKHPANL 288
>ref|NP_005525.2| interferon gamma receptor 2 precursor [Homo sapiens].
Length = 337
Score = 52.0 bits (123), Expect = 2e-06
Identities = 39/156 (25%), Positives = 68/156 (43%), Gaps = 8/156 (5%)
Frame = +2
Query: 362 CQYVTSTECNFSSIKLKSVYE---KIKLRIRAETGNSTSPWYEVEPFIPFQEAQIGPPD- 529
C +T+TEC+F++ + + + LR+RAE G S W + F ++ +GPP+
Sbjct: 86 CTQITATECDFTAASPSAGFPMDFNVTLRLRAELGALHSAWVTMPWFQHYRNVTVGPPEN 145
Query: 530 VHLEAEDKAIIINLSPPGTKNSVMWAMDSSSFVYSLVIWKNSSSLEERTKTVYARDKIHQ 709
+ + + ++II S P A F Y + W+ + + +
Sbjct: 146 IEVTPGEGSLIIRFSSPFDIADTSTAF----FCYYVHYWEKGGIQQVKGPFRSNSISLDN 201
Query: 710 LSPETTYCLKVKAGLRSPR----KVGVYSPVYCINT 805
L P YCL+V+A L + +VG S + C T
Sbjct: 202 LKPSRVYCLQVQAQLLWNKSNIFRVGHLSNISCYET 237
Score = 51.2 bits (121), Expect = 4e-06
Identities = 71/314 (22%), Positives = 121/314 (38%), Gaps = 23/314 (7%)
Frame = +2
Query: 770 VGVYSPVYCINTTVKHHLPSPENLEINAENRVYVLKW-----NYTYENVTFQAQWLHAFL 934
+GV++ LP+P++ +I N VL W + + V +Q Q+ +
Sbjct: 13 LGVFAAAAAAPPDPLSQLPAPQHPKIRLYNAEQVLSWEPVALSNSTRPVVYQVQFKYTDS 72
Query: 935 KKIPEDHSDKWKQIPNCENVKTTHCVFPQNVFTKGI-----FFIRVQASNGNSTSLWSEE 1099
K D NC + T C F + G +R++A G S W
Sbjct: 73 KWFTADIMSIGV---NCTQITATECDFTAASPSAGFPMDFNVTLRLRAELGALHSAWVTM 129
Query: 1100 KRFNTEMQTILFPPV-INMKPINDASLRVGIGAPKESEDKSVNQLYPLIYEVIFRENTSD 1276
F + PP I + P + SL + +P + D S Y V + E
Sbjct: 130 PWFQHYRNVTVGPPENIEVTP-GEGSLIIRFSSPFDIADTSTAFF---CYYVHYWEKGGI 185
Query: 1277 TERDVLEKRTDFTFSNLKPLTVYCVKARALIENDRWNRSSVF-----SDTVCEKTKPGST 1441
+ + + NLKP VYC++ +A + WN+S++F S+ C +T ++
Sbjct: 186 QQVKGPFRSNSISLDNLKPSRVYCLQVQAQL---LWNKSNIFRVGHLSNISCYETMADAS 242
Query: 1442 SQAWLI----AGILSAI-LLFPAVFYGVKVVSRCINYVFFPSSKPPSTIDEYFAE--QPL 1600
++ + G S + +L A F+ V I Y F P I+EY + QP+
Sbjct: 243 TELQQVILISVGTFSLLSVLAGACFFLVLKYRGLIKYWFHTPPSIPLQIEEYLKDPTQPI 302
Query: 1601 KNLLLSTSEEQTEI 1642
L S + ++
Sbjct: 303 LEALDKDSSPKDDV 316
>ref|NP_443194.1| interleukin-22 receptor subunit alpha-2 isoform 1 [Homo sapiens].
Length = 263
Score = 51.6 bits (122), Expect = 3e-06
Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 8/140 (5%)
Frame = +2
Query: 962 KWKQIPNCENVKTTHC-VFPQNVFTKGIFFIRVQASNGNSTSLWSEEKRFNTEMQTILFP 1138
+WK +C + C + + + ++ RV+A++ S S WS RF +T + P
Sbjct: 103 QWKNKEDCWGTQELSCDLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDP 162
Query: 1139 PVINMKPINDASLRVGIGAP------KESEDKSVNQLYPLIYEVIFRENTSDTERDVLE- 1297
PV+N+ +N SL V + AP ++ ++ S+ Y L+Y V N+ + E+ V E
Sbjct: 163 PVMNITQVN-GSLLVILHAPNLPYRYQKEKNVSIEDYYELLYRVFIINNSLEKEQKVYEG 221
Query: 1298 KRTDFTFSNLKPLTVYCVKA 1357
L P + YCV A
Sbjct: 222 AHRAVEIEALTPHSSYCVVA 241
>ref|NP_851826.1| interleukin-22 receptor subunit alpha-2 isoform 2 [Homo sapiens].
Length = 231
Score = 51.6 bits (122), Expect = 3e-06
Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 8/140 (5%)
Frame = +2
Query: 962 KWKQIPNCENVKTTHC-VFPQNVFTKGIFFIRVQASNGNSTSLWSEEKRFNTEMQTILFP 1138
+WK +C + C + + + ++ RV+A++ S S WS RF +T + P
Sbjct: 71 QWKNKEDCWGTQELSCDLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDP 130
Query: 1139 PVINMKPINDASLRVGIGAP------KESEDKSVNQLYPLIYEVIFRENTSDTERDVLE- 1297
PV+N+ +N SL V + AP ++ ++ S+ Y L+Y V N+ + E+ V E
Sbjct: 131 PVMNITQVN-GSLLVILHAPNLPYRYQKEKNVSIEDYYELLYRVFIINNSLEKEQKVYEG 189
Query: 1298 KRTDFTFSNLKPLTVYCVKA 1357
L P + YCV A
Sbjct: 190 AHRAVEIEALTPHSSYCVVA 209
>ref|NP_001984.1| tissue factor isoform 1 precursor [Homo sapiens].
Length = 295
Score = 50.8 bits (120), Expect = 5e-06
Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 22/168 (13%)
Frame = +2
Query: 362 CQYVTSTECNFSSIKLKSVYEKIKLRIRA-------ETGNSTSPWYEVEP-FIPFQEAQI 517
C Y T TEC+ + +K V + R+ + TG++ P YE P F P+ E +
Sbjct: 81 CFYTTDTECDLTDEIVKDVKQTYLARVFSYPAGNVESTGSAGEPLYENSPEFTPYLETNL 140
Query: 518 GPPD----------VHLEAEDKAIIINLSPPGTKNSVMWAMD--SSSFVYSLVIWKNSSS 661
G P V++ ED+ ++ + N+ + D +Y+L WK+SSS
Sbjct: 141 GQPTIQSFEQVGTKVNVTVEDERTLVRRN-----NTFLSLRDVFGKDLIYTLYYWKSSSS 195
Query: 662 LEERTKTVYARDKIHQLSPETTYCLKVKAGL--RSPRKVGVYSPVYCI 799
++ KT + + + YC V+A + R+ + SPV C+
Sbjct: 196 GKKTAKT-NTNEFLIDVDKGENYCFSVQAVIPSRTVNRKSTDSPVECM 242
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 75,914,537
Number of extensions: 1900308
Number of successful extensions: 5987
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 5953
Number of HSP's successfully gapped: 10
Length of query: 694
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 584
Effective length of database: 14,671,124
Effective search space: 8567936416
Effective search space used: 8567936416
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-012753
(2082 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL895400.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 882 0.0
gb|GL893257.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 396 e-107
gb|GL894601.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 361 1e-96
gb|GL894468.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 305 5e-80
gb|GL894045.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 293 2e-76
gb|GL892856.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 254 2e-64
gb|GL892890.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 252 7e-64
gb|GL894523.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 232 6e-58
gb|GL893023.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 190 2e-45
gb|GL895100.1| Sus scrofa unplaced genomic scaffold chrU_scaffold37 107 2e-20
>gb|GL895400.1| Sus scrofa unplaced genomic scaffold chrU_scaffold397
Length = 1065
Score = 882 bits (445), Expect = 0.0
Identities = 493/507 (97%), Gaps = 3/507 (0%)
Strand = Plus / Plus
Query: 1578 agtatttcgctgaacagccactcaagaatctgcttctctccacctctgaagaacaaaccg 1637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 agtatttcgctgaacagccactcaagaatctgcttctctccacctctgaagaacaaaccg 124
Query: 1638 aaatatgtttcatcgttgaaaatacaaacactattactacaatagaagagactgatcaaa 1697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 aaatatgtttcatcgttgaaaatacaaacactattactacaatagaagagactgatcaaa 184
Query: 1698 ttgatgacaatcacagcagatgcagttctcaaacgaatcgggattcaggagtctattcga 1757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ttgatgacaatcacagcagatgcagttctcaaacgaatcgggattcaggagtctattcga 244
Query: 1758 atgaagatgaaaacagtggaagcaaaataggagaagaaattctgcgacaggcagccgtgt 1817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 atgaagatgaaaacagtggaagcaaaataggagaagaaattctgcgacaggcagccgtgt 304
Query: 1818 gaccagaacgctttaaaatcttgggaagtctatggaacttaacagcaggagcctgagctc 1877
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 305 gaccagaacgctttaaaatcttgggaagtctatggaacttaaaagcaggagcctgagctc 364
Query: 1878 cttgcttctctcagtaactcttaagaacgtatttgcttgtggcggaac-aaaaagcacct 1936
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 365 cttgcttctctcagtaactcttaagaacgtatttgcttgtggcggaacaaaaaagcacct 424
Query: 1937 tcagatcatcggtcctcaaaatacaggcaagcacttaactctttaaaaggaatctggnnn 1996
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tcagatcatcggtcctcaaaatacaggcaagcacttaactctttaaaaggaatctgg-aa 483
Query: 1997 nnnngttggctgtattcttttctgtagggaaagtcttggcc-acctgtcattggaccggc 2055
||| |||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 484 aagagtttgctgtattcttttctgtatggaaagtcttggccaacctgtcattggactggc 543
Query: 2056 cttggatgaaaggcattaaatcccgaa 2082
||||||||| |||||||||||||||||
Sbjct: 544 cttggatgagaggcattaaatcccgaa 570
>gb|GL893257.1| Sus scrofa unplaced genomic scaffold chrU_scaffold204
Length = 257
Score = 396 bits (200), Expect = e-107
Identities = 200/200 (100%)
Strand = Plus / Plus
Query: 925 tgcctttttaaaaaagattcctgaggaccattcagacaagtggaaacaaataccaaactg 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36 tgcctttttaaaaaagattcctgaggaccattcagacaagtggaaacaaataccaaactg 95
Query: 985 tgaaaatgtcaaaacgacccattgtgtctttcctcaaaatgttttcacgaaaggaatttt 1044
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 tgaaaatgtcaaaacgacccattgtgtctttcctcaaaatgttttcacgaaaggaatttt 155
Query: 1045 cttcatccgtgtccaagcatctaatggaaatagcacatctctttggtccgaagagaagag 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 cttcatccgtgtccaagcatctaatggaaatagcacatctctttggtccgaagagaagag 215
Query: 1105 atttaatactgaaatgcaaa 1124
||||||||||||||||||||
Sbjct: 216 atttaatactgaaatgcaaa 235
>gb|GL894601.1| Sus scrofa unplaced genomic scaffold chrU_scaffold325
Length = 566
Score = 361 bits (182), Expect = 1e-96
Identities = 182/182 (100%)
Strand = Plus / Plus
Query: 328 aacagggatggataattggataaagttgcctggatgtcaatatgttactagcactgaatg 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aacagggatggataattggataaagttgcctggatgtcaatatgttactagcactgaatg 319
Query: 388 caacttttcttccatcaagcttaaaagcgtgtatgaaaaaattaaattgcgtataagagc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 caacttttcttccatcaagcttaaaagcgtgtatgaaaaaattaaattgcgtataagagc 379
Query: 448 agaaacaggaaacagcacttctccgtggtatgaggttgagccgtttataccatttcaaga 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agaaacaggaaacagcacttctccgtggtatgaggttgagccgtttataccatttcaaga 439
Query: 508 ag 509
||
Sbjct: 440 ag 441
>gb|GL894468.1| Sus scrofa unplaced genomic scaffold chrU_scaffold313
Length = 496
Score = 305 bits (154), Expect = 5e-80
Identities = 154/154 (100%)
Strand = Plus / Minus
Query: 1281 agagagacgttctagagaagagaacggattttactttctctaacttgaaaccactgactg 1340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 agagagacgttctagagaagagaacggattttactttctctaacttgaaaccactgactg 362
Query: 1341 tgtattgtgtcaaagccagagcactcatcgagaatgacaggtggaatagaagcagtgttt 1400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgtattgtgtcaaagccagagcactcatcgagaatgacaggtggaatagaagcagtgttt 302
Query: 1401 ttagtgacactgtgtgcgagaaaaccaaaccagg 1434
||||||||||||||||||||||||||||||||||
Sbjct: 301 ttagtgacactgtgtgcgagaaaaccaaaccagg 268
>gb|GL894045.1| Sus scrofa unplaced genomic scaffold chrU_scaffold275
Length = 383
Score = 293 bits (148), Expect = 2e-76
Identities = 148/148 (100%)
Strand = Plus / Minus
Query: 1432 aggaagcacttcccaagcctggcttatagctggaattctctcggcgatacttttgttccc 1491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 aggaagcacttcccaagcctggcttatagctggaattctctcggcgatacttttgttccc 274
Query: 1492 tgctgttttttatggtgtgaaagtcgtctcgcgatgtatcaattatgtgttcttcccatc 1551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tgctgttttttatggtgtgaaagtcgtctcgcgatgtatcaattatgtgttcttcccatc 214
Query: 1552 aagtaaacctccttccactatagatgag 1579
||||||||||||||||||||||||||||
Sbjct: 213 aagtaaacctccttccactatagatgag 186
>gb|GL892856.1| Sus scrofa unplaced genomic scaffold chrU_scaffold168
Length = 207
Score = 254 bits (128), Expect = 2e-64
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 682 tgtttatgccagagataaaattcaccaactctcaccagagacaacttactgtttaaaagt 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtttatgccagagataaaattcaccaactctcaccagagacaacttactgtttaaaagt 60
Query: 742 taaagccggactccgttcgccaagaaaagtcggtgtctacagtccagtgtattgtataaa 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 taaagccggactccgttcgccaagaaaagtcggtgtctacagtccagtgtattgtataaa 120
Query: 802 taccacag 809
||||||||
Sbjct: 121 taccacag 128
>gb|GL892890.1| Sus scrofa unplaced genomic scaffold chrU_scaffold171
Length = 210
Score = 252 bits (127), Expect = 7e-64
Identities = 127/127 (100%)
Strand = Plus / Minus
Query: 201 cagggggtgcagatctcagatctcctgaaaatgtcgtggtctctatcattgatgacaact 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 cagggggtgcagatctcagatctcctgaaaatgtcgtggtctctatcattgatgacaact 135
Query: 261 tcatcctgaaatggaagagcagcagtgaatccgtcagcaatgtgactttttcagcagatt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 tcatcctgaaatggaagagcagcagtgaatccgtcagcaatgtgactttttcagcagatt 75
Query: 321 atcaaat 327
|||||||
Sbjct: 74 atcaaat 68
>gb|GL894523.1| Sus scrofa unplaced genomic scaffold chrU_scaffold318
Length = 520
Score = 232 bits (117), Expect = 6e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 808 agtgaaacatcacctgccttcaccagaaaatctagaaattaatgctgaaaaccgggtcta 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtgaaacatcacctgccttcaccagaaaatctagaaattaatgctgaaaaccgggtcta 320
Query: 868 tgttcttaaatggaattacacctatgaaaatgtgacttttcaagctcagtggctcca 924
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgttcttaaatggaattacacctatgaaaatgtgacttttcaagctcagtggctcca 377
>gb|GL893023.1| Sus scrofa unplaced genomic scaffold chrU_scaffold183
Length = 225
Score = 190 bits (96), Expect = 2e-45
Identities = 96/96 (100%)
Strand = Plus / Minus
Query: 1125 ctatcctgtttcctcccgtcatcaacatgaaacccataaatgatgcttcactgcgtgtcg 1184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ctatcctgtttcctcccgtcatcaacatgaaacccataaatgatgcttcactgcgtgtcg 37
Query: 1185 gtatcggtgctccgaaagaatctgaggacaagtctg 1220
||||||||||||||||||||||||||||||||||||
Sbjct: 36 gtatcggtgctccgaaagaatctgaggacaagtctg 1
>gb|GL895100.1| Sus scrofa unplaced genomic scaffold chrU_scaffold37
Length = 112
Score = 107 bits (54), Expect = 2e-20
Identities = 54/54 (100%)
Strand = Plus / Minus
Query: 1229 ctttacccactaatttatgaagttatttttagagaaaacacttcagatactgag 1282
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 ctttacccactaatttatgaagttatttttagagaaaacacttcagatactgag 59
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 69,816,765
Number of extensions: 378
Number of successful extensions: 378
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 376
Number of HSP's successfully gapped: 11
Length of query: 2082
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2060
Effective length of database: 2,808,408,574
Effective search space: 5785321662440
Effective search space used: 5785321662440
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)